Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676140 | XP_003605789.2 | 96.730 | 367 | 12 | 0 | 1 | 367 | 4 | 370 | 0.0 | 734 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676140 | A0A396I5A5 | 96.730 | 367 | 12 | 0 | 1 | 367 | 4 | 370 | 0.0 | 734 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004580 | Msa0676140 | 0.809856 | 1.538678e-50 | -8.615850e-47 |
| Msa0004590 | Msa0676140 | 0.813724 | 2.214381e-51 | -8.615850e-47 |
| Msa0025700 | Msa0676140 | 0.817306 | 3.530985e-52 | -8.615850e-47 |
| Msa0038010 | Msa0676140 | 0.800870 | 1.176692e-48 | -8.615850e-47 |
| Msa0043840 | Msa0676140 | 0.810347 | 1.205903e-50 | -8.615850e-47 |
| Msa0048950 | Msa0676140 | 0.853651 | 2.076219e-61 | -8.615850e-47 |
| Msa0059880 | Msa0676140 | 0.819953 | 8.860346e-53 | -8.615850e-47 |
| Msa0072030 | Msa0676140 | 0.800289 | 1.545199e-48 | -8.615850e-47 |
| Msa0090500 | Msa0676140 | 0.813562 | 2.403793e-51 | -8.615850e-47 |
| Msa0102920 | Msa0676140 | 0.806390 | 8.418941e-50 | -8.615850e-47 |
| Msa0603950 | Msa0676140 | 0.826108 | 3.251355e-54 | -8.615850e-47 |
| Msa0605410 | Msa0676140 | 0.805596 | 1.236964e-49 | -8.615850e-47 |
| Msa0605470 | Msa0676140 | 0.828361 | 9.385624e-55 | -8.615850e-47 |
| Msa0610190 | Msa0676140 | 0.801086 | 1.063062e-48 | -8.615850e-47 |
| Msa0623980 | Msa0676140 | 0.823574 | 1.287270e-53 | -8.615850e-47 |
| Msa0624050 | Msa0676140 | 0.938283 | 8.686794e-99 | -8.615850e-47 |
| Msa0624930 | Msa0676140 | 0.801905 | 7.220567e-49 | -8.615850e-47 |
| Msa0626980 | Msa0676140 | 0.817988 | 2.478459e-52 | -8.615850e-47 |
| Msa0627360 | Msa0676140 | 0.818614 | 1.788199e-52 | -8.615850e-47 |
| Msa0651090 | Msa0676140 | 0.814404 | 1.567142e-51 | -8.615850e-47 |
| Msa0655370 | Msa0676140 | 0.801645 | 8.167399e-49 | -8.615850e-47 |
| Msa0667600 | Msa0676140 | 0.804178 | 2.446805e-49 | -8.615850e-47 |
| Msa0668220 | Msa0676140 | 0.807257 | 5.522456e-50 | -8.615850e-47 |
| Msa0671400 | Msa0676140 | 0.814637 | 1.391995e-51 | -8.615850e-47 |
| Msa0673940 | Msa0676140 | 0.830488 | 2.855368e-55 | -8.615850e-47 |
| Msa0676140 | Msa0676190 | 0.979279 | 1.278022e-147 | -8.615850e-47 |
| Msa0676140 | Msa0676200 | 0.851479 | 8.643624e-61 | -8.615850e-47 |
| Msa0676140 | Msa0678620 | 0.839281 | 1.740685e-57 | -8.615850e-47 |
| Msa0676140 | Msa0684720 | 0.819975 | 8.754629e-53 | -8.615850e-47 |
| Msa0676140 | Msa0708020 | 0.806280 | 8.882101e-50 | -8.615850e-47 |
| Msa0676140 | Msa0716980 | 0.818202 | 2.217181e-52 | -8.615850e-47 |
| Msa0676140 | Msa0727480 | 0.807387 | 5.182265e-50 | -8.615850e-47 |
| Msa0676140 | Msa0735340 | 0.831442 | 1.665063e-55 | -8.615850e-47 |
| Msa0676140 | Msa0768670 | 0.810061 | 1.389831e-50 | -8.615850e-47 |
| Msa0676140 | Msa0768720 | 0.810979 | 8.806621e-51 | -8.615850e-47 |
| Msa0676140 | Msa0777210 | 0.816884 | 4.392108e-52 | -8.615850e-47 |
| Msa0676140 | Msa0791300 | 0.831737 | 1.408623e-55 | -8.615850e-47 |
| Msa0676140 | Msa0792410 | 0.801497 | 8.757986e-49 | -8.615850e-47 |
| Msa0676140 | Msa0804170 | 0.805966 | 1.034052e-49 | -8.615850e-47 |
| Msa0676140 | Msa0817100 | 0.812652 | 3.806365e-51 | -8.615850e-47 |
| Msa0676140 | Msa0847140 | 0.816980 | 4.180365e-52 | -8.615850e-47 |
| Msa0676140 | Msa0863840 | 0.806710 | 7.207674e-50 | -8.615850e-47 |
| Msa0676140 | Msa0871420 | 0.814834 | 1.258917e-51 | -8.615850e-47 |
| Msa0676140 | Msa0883640 | 0.843463 | 1.379859e-58 | -8.615850e-47 |
| Msa0676140 | Msa0898060 | 0.803800 | 2.932663e-49 | -8.615850e-47 |
| Msa0676140 | Msa0902340 | 0.830516 | 2.810452e-55 | -8.615850e-47 |
| Msa0676140 | Msa0910590 | 0.808086 | 3.680921e-50 | -8.615850e-47 |
| Msa0676140 | Msa0910830 | 0.839274 | 1.747395e-57 | -8.615850e-47 |
| Msa0676140 | Msa0931370 | 0.800200 | 1.610950e-48 | -8.615850e-47 |
| Msa0676140 | Msa0960090 | 0.845010 | 5.302082e-59 | -8.615850e-47 |
| Msa0676140 | Msa0973770 | 0.815679 | 8.168393e-52 | -8.615850e-47 |
| Msa0676140 | Msa0973890 | -0.802394 | 5.729387e-49 | -8.615850e-47 |
| Msa0676140 | Msa0985700 | 0.843936 | 1.031262e-58 | -8.615850e-47 |
| Msa0676140 | Msa1021620 | 0.823597 | 1.271406e-53 | -8.615850e-47 |
| Msa0676140 | Msa1036020 | 0.804428 | 2.170937e-49 | -8.615850e-47 |
| Msa0676140 | Msa1036590 | 0.800642 | 1.309431e-48 | -8.615850e-47 |
| Msa0676140 | Msa1061670 | 0.832392 | 9.702639e-56 | -8.615850e-47 |
| Msa0676140 | Msa1076830 | 0.820379 | 7.075168e-53 | -8.615850e-47 |
| Msa0676140 | Msa1076900 | 0.800470 | 1.419837e-48 | -8.615850e-47 |
| Msa0676140 | Msa1078300 | 0.828055 | 1.111890e-54 | -8.615850e-47 |
| Msa0676140 | Msa1085560 | 0.811104 | 8.273493e-51 | -8.615850e-47 |
| Msa0676140 | Msa1099640 | 0.800484 | 1.410242e-48 | -8.615850e-47 |
| Msa0676140 | Msa1106960 | 0.821242 | 4.480980e-53 | -8.615850e-47 |
| Msa0676140 | Msa1109880 | 0.807126 | 5.885537e-50 | -8.615850e-47 |
| Msa0676140 | Msa1109890 | 0.831823 | 1.341375e-55 | -8.615850e-47 |
| Msa0676140 | Msa1130770 | 0.827608 | 1.424276e-54 | -8.615850e-47 |
| Msa0676140 | Msa1149020 | 0.803274 | 3.769062e-49 | -8.615850e-47 |
| Msa0676140 | Msa1164240 | 0.803710 | 3.061033e-49 | -8.615850e-47 |
| Msa0676140 | Msa1170320 | 0.812501 | 4.107904e-51 | -8.615850e-47 |
| Msa0676140 | Msa1211160 | 0.806013 | 1.010696e-49 | -8.615850e-47 |
| Msa0676140 | Msa1211320 | 0.810853 | 9.373828e-51 | -8.615850e-47 |
| Msa0676140 | Msa1214960 | 0.808687 | 2.740719e-50 | -8.615850e-47 |
| Msa0676140 | Msa1220720 | 0.811676 | 6.214708e-51 | -8.615850e-47 |
| Msa0676140 | Msa1255710 | 0.800857 | 1.183768e-48 | -8.615850e-47 |
| Msa0676140 | Msa1265570 | 0.809429 | 1.900138e-50 | -8.615850e-47 |
| Msa0676140 | Msa1286420 | 0.809324 | 2.002011e-50 | -8.615850e-47 |
| Msa0676140 | Msa1288970 | -0.811395 | 7.152812e-51 | -8.615850e-47 |
| Msa0676140 | Msa1299310 | 0.807906 | 4.020440e-50 | -8.615850e-47 |
| Msa0676140 | Msa1323030 | 0.811562 | 6.579844e-51 | -8.615850e-47 |
| Msa0676140 | Msa1334670 | 0.808494 | 3.012512e-50 | -8.615850e-47 |
| Msa0676140 | Msa1357490 | 0.821833 | 3.272281e-53 | -8.615850e-47 |
| Msa0676140 | Msa1357860 | 0.804769 | 1.842814e-49 | -8.615850e-47 |
| Msa0676140 | Msa1362590 | 0.816161 | 6.379387e-52 | -8.615850e-47 |
| Msa0676140 | Msa1363690 | 0.806757 | 7.045687e-50 | -8.615850e-47 |
| Msa0676140 | Msa1365230 | 0.808414 | 3.133473e-50 | -8.615850e-47 |
| Msa0676140 | Msa1373560 | 0.818744 | 1.670589e-52 | -8.615850e-47 |
| Msa0676140 | Msa1376070 | 0.826998 | 1.993513e-54 | -8.615850e-47 |
| Msa0676140 | Msa1377460 | 0.805545 | 1.267594e-49 | -8.615850e-47 |
| Msa0676140 | Msa1377520 | 0.803691 | 3.089417e-49 | -8.615850e-47 |
| Msa0676140 | Msa1378400 | 0.942072 | 1.371392e-101 | -8.615850e-47 |
| Msa0676140 | Msa1378950 | 0.805643 | 1.209151e-49 | -8.615850e-47 |
| Msa0676140 | Msa1396550 | 0.803487 | 3.404696e-49 | -8.615850e-47 |
| Msa0676140 | Msa1407670 | 0.833051 | 6.658483e-56 | -8.615850e-47 |
| Msa0676140 | Msa1413020 | 0.808437 | 3.098895e-50 | -8.615850e-47 |
| Msa0676140 | Msa1417220 | 0.807190 | 5.705816e-50 | -8.615850e-47 |
| Msa0676140 | Msa1417950 | 0.813305 | 2.738147e-51 | -8.615850e-47 |
| Msa0676140 | Msa1420020 | 0.816587 | 5.120847e-52 | -8.615850e-47 |
| Msa0676140 | Msa1421120 | 0.834608 | 2.716506e-56 | -8.615850e-47 |
| Msa0676140 | Msa1421130 | 0.800904 | 1.157979e-48 | -8.615850e-47 |
| Msa0676140 | Msa1421540 | 0.819162 | 1.342458e-52 | -8.615850e-47 |
| Msa0676140 | Msa1434700 | 0.812341 | 4.450785e-51 | -8.615850e-47 |
| Msa0676140 | Msa1447900 | 0.816387 | 5.677644e-52 | -8.615850e-47 |
| Msa0676140 | Msa1449770 | 0.839298 | 1.722616e-57 | -8.615850e-47 |
| Msa0676140 | Msa1459610 | 0.801929 | 7.141479e-49 | -8.615850e-47 |
| Msa0676140 | Msa1462610 | 0.800240 | 1.581625e-48 | -8.615850e-47 |
| Msa0137970 | Msa0676140 | 0.819719 | 1.001772e-52 | -8.615850e-47 |
| Msa0147670 | Msa0676140 | 0.834274 | 3.295999e-56 | -8.615850e-47 |
| Msa0147680 | Msa0676140 | 0.818371 | 2.030147e-52 | -8.615850e-47 |
| Msa0150910 | Msa0676140 | 0.806401 | 8.372981e-50 | -8.615850e-47 |
| Msa0210790 | Msa0676140 | 0.809507 | 1.828920e-50 | -8.615850e-47 |
| Msa0210850 | Msa0676140 | 0.818741 | 1.673271e-52 | -8.615850e-47 |
| Msa0219210 | Msa0676140 | 0.802838 | 4.639642e-49 | -8.615850e-47 |
| Msa0235080 | Msa0676140 | 0.821216 | 4.542171e-53 | -8.615850e-47 |
| Msa0374130 | Msa0676140 | 0.810699 | 1.012103e-50 | -8.615850e-47 |
| Msa0444200 | Msa0676140 | 0.838777 | 2.350186e-57 | -8.615850e-47 |
| Msa0464160 | Msa0676140 | 0.806742 | 7.095043e-50 | -8.615850e-47 |
| Msa0469550 | Msa0676140 | 0.809752 | 1.620328e-50 | -8.615850e-47 |
| Msa0260980 | Msa0676140 | 0.813377 | 2.639425e-51 | -8.615850e-47 |
| Msa0273360 | Msa0676140 | 0.827368 | 1.625799e-54 | -8.615850e-47 |
| Msa0275570 | Msa0676140 | 0.800397 | 1.468861e-48 | -8.615850e-47 |
| Msa0278480 | Msa0676140 | 0.800587 | 1.343882e-48 | -8.615850e-47 |
| Msa0278940 | Msa0676140 | 0.805233 | 1.473754e-49 | -8.615850e-47 |
| Msa0298270 | Msa0676140 | 0.815142 | 1.075507e-51 | -8.615850e-47 |
| Msa0327890 | Msa0676140 | 0.816632 | 5.002930e-52 | -8.615850e-47 |
| Msa0333940 | Msa0676140 | 0.816936 | 4.277090e-52 | -8.615850e-47 |
| Msa0334050 | Msa0676140 | 0.816475 | 5.426310e-52 | -8.615850e-47 |
| Msa0336430 | Msa0676140 | 0.822217 | 2.665525e-53 | -8.615850e-47 |
| Msa0336460 | Msa0676140 | 0.805167 | 1.521247e-49 | -8.615850e-47 |
| Msa0336520 | Msa0676140 | 0.838274 | 3.169426e-57 | -8.615850e-47 |
| Msa0491760 | Msa0676140 | 0.834169 | 3.501354e-56 | -8.615850e-47 |
| Msa0491770 | Msa0676140 | 0.816023 | 6.848215e-52 | -8.615850e-47 |
| Msa0509630 | Msa0676140 | 0.811578 | 6.526660e-51 | -8.615850e-47 |
| Msa0515260 | Msa0676140 | 0.812061 | 5.124766e-51 | -8.615850e-47 |
| Msa0529360 | Msa0676140 | 0.807061 | 6.074684e-50 | -8.615850e-47 |
| Msa0530660 | Msa0676140 | 0.816806 | 4.573282e-52 | -8.615850e-47 |
| Msa0531080 | Msa0676140 | 0.801973 | 6.993441e-49 | -8.615850e-47 |
| Msa0548970 | Msa0676140 | 0.805188 | 1.506316e-49 | -8.615850e-47 |
| Msa0577050 | Msa0676140 | -0.801814 | 7.540307e-49 | -8.615850e-47 |
| Msa0584970 | Msa0676140 | 0.833299 | 5.774698e-56 | -8.615850e-47 |
| Msa0587180 | Msa0676140 | 0.835198 | 1.929564e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676140 | MtrunA17_Chr4g0019571 | 96.730 | 367 | 12 | 0 | 1 | 367 | 4 | 370 | 0.0 | 734 |
| Msa0676140 | MtrunA17_Chr4g0019601 | 87.193 | 367 | 47 | 0 | 1 | 367 | 4 | 370 | 0.0 | 677 |
| Msa0676140 | MtrunA17_Chr4g0019581 | 87.052 | 363 | 47 | 0 | 5 | 367 | 77 | 439 | 0.0 | 672 |
| Msa0676140 | MtrunA17_Chr3g0089391 | 81.199 | 367 | 69 | 0 | 1 | 367 | 1 | 367 | 0.0 | 614 |
| Msa0676140 | MtrunA17_Chr1g0149051 | 54.545 | 330 | 148 | 2 | 34 | 361 | 39 | 368 | 3.78e-131 | 380 |
| Msa0676140 | MtrunA17_Chr2g0332541 | 47.904 | 334 | 168 | 2 | 34 | 361 | 28 | 361 | 1.79e-111 | 330 |
| Msa0676140 | MtrunA17_Chr2g0286051 | 43.161 | 329 | 186 | 1 | 34 | 361 | 35 | 363 | 3.13e-96 | 291 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0676140 | AT3G08030.1 | 67.941 | 340 | 108 | 1 | 29 | 367 | 26 | 365 | 1.67e-175 | 493 |
| Msa0676140 | AT3G08030.2 | 68.731 | 323 | 100 | 1 | 46 | 367 | 1 | 323 | 3.78e-169 | 474 |
| Msa0676140 | AT2G41810.1 | 58.101 | 358 | 143 | 3 | 11 | 361 | 7 | 364 | 3.18e-150 | 429 |
| Msa0676140 | AT2G41800.1 | 60.241 | 332 | 131 | 1 | 34 | 364 | 36 | 367 | 4.87e-150 | 428 |
| Msa0676140 | AT5G11420.1 | 55.623 | 329 | 145 | 1 | 34 | 361 | 30 | 358 | 3.00e-135 | 390 |
| Msa0676140 | AT5G25460.1 | 52.210 | 362 | 171 | 2 | 1 | 361 | 1 | 361 | 7.88e-135 | 389 |
| Msa0676140 | AT4G32460.2 | 53.799 | 329 | 151 | 1 | 34 | 361 | 29 | 357 | 1.03e-131 | 381 |
| Msa0676140 | AT4G32460.1 | 53.799 | 329 | 151 | 1 | 34 | 361 | 29 | 357 | 1.03e-131 | 381 |
| Msa0676140 | AT4G32460.4 | 54.259 | 317 | 144 | 1 | 46 | 361 | 1 | 317 | 2.47e-129 | 374 |
| Msa0676140 | AT4G32460.3 | 54.259 | 317 | 144 | 1 | 46 | 361 | 1 | 317 | 2.47e-129 | 374 |
| Msa0676140 | AT1G80240.1 | 50.152 | 329 | 163 | 1 | 34 | 361 | 32 | 360 | 5.76e-114 | 336 |
| Msa0676140 | AT1G29980.2 | 42.308 | 338 | 185 | 2 | 34 | 361 | 7 | 344 | 1.94e-96 | 291 |
| Msa0676140 | AT1G29980.1 | 42.308 | 338 | 185 | 2 | 34 | 361 | 43 | 380 | 7.07e-96 | 291 |
| Msa0676140 | AT2G34510.1 | 42.515 | 334 | 186 | 2 | 34 | 361 | 43 | 376 | 5.04e-94 | 286 |
| Msa0676140 | AT2G34510.2 | 43.793 | 290 | 157 | 2 | 78 | 361 | 1 | 290 | 3.42e-84 | 258 |
| Msa0676140 | AT5G14150.2 | 27.733 | 375 | 232 | 12 | 11 | 367 | 8 | 361 | 8.51e-31 | 121 |
| Msa0676140 | AT5G14150.1 | 27.733 | 375 | 232 | 12 | 11 | 367 | 8 | 361 | 8.51e-31 | 121 |
Find 102 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTGTTGTGTTGAAAAT+AGG | 0.118027 | 4_4:-26348614 | None:intergenic |
| CTTTGAATCAATAAATTTAA+TGG | 0.130784 | 4_4:-26348708 | None:intergenic |
| GCCTATATTTGCAGATAATT+TGG | 0.140639 | 4_4:+26348559 | Msa0676140:intron |
| CTTAAAGTTTACTTCCAAAA+TGG | 0.175065 | 4_4:+26347092 | Msa0676140:intron |
| CTTGTTTCCTTTATGAATCT+TGG | 0.194424 | 4_4:-26347137 | None:intergenic |
| TCCTACTTGTGGTCCACTTT+TGG | 0.248583 | 4_4:+26347526 | Msa0676140:CDS |
| TCTCTTCAAAGTTCCCATTT+TGG | 0.257255 | 4_4:-26347106 | None:intergenic |
| TTCATATTGTAGACTTTGTT+TGG | 0.283032 | 4_4:-26348815 | None:intergenic |
| CATTTGTTGTGTTGAAAATA+GGG | 0.295242 | 4_4:-26348613 | None:intergenic |
| CATACAAGGATTGATGATAT+TGG | 0.295621 | 4_4:+26349019 | Msa0676140:CDS |
| TCCTTTATGAATCTTGGGTT+TGG | 0.305420 | 4_4:-26347131 | None:intergenic |
| CAATGGTATGCTCTAATATT+AGG | 0.315217 | 4_4:+26347329 | Msa0676140:CDS |
| CAGGTTTGACCTTGATGGTT+TGG | 0.315262 | 4_4:-26347304 | None:intergenic |
| AAAGTTCCTTTCAAATCTTT+AGG | 0.319577 | 4_4:+26348914 | Msa0676140:CDS |
| TAGACCATTGATTTCCCATT+TGG | 0.321175 | 4_4:-26347183 | None:intergenic |
| AATAAATTTAATGGCTTTGA+GGG | 0.322824 | 4_4:-26348699 | None:intergenic |
| CTTCTTGCATACCAGGGTTA+TGG | 0.328613 | 4_4:-26347502 | None:intergenic |
| TTGTTTCCTTTATGAATCTT+GGG | 0.332661 | 4_4:-26347136 | None:intergenic |
| CAATGGTGATGTTATTGCTT+GGG | 0.353561 | 4_4:+26347442 | Msa0676140:CDS |
| AAGAATTTCCAAGTGCCATT+TGG | 0.355884 | 4_4:+26348728 | Msa0676140:CDS |
| AGGTTTGACCTTGATGGTTT+GGG | 0.356574 | 4_4:-26347303 | None:intergenic |
| TTGACCAGGTTTGACCTTGA+TGG | 0.371778 | 4_4:-26347309 | None:intergenic |
| GACACAAGATCTTGTTGCTT+TGG | 0.386124 | 4_4:-26348650 | None:intergenic |
| GAAAACATTCACTTCCCAAA+TGG | 0.392506 | 4_4:+26347168 | Msa0676140:CDS |
| GGAGCAGTGGAGCTTGTTGC+AGG | 0.392515 | 4_4:+26348755 | Msa0676140:CDS |
| TTGTGTCACCACTCCCTGGC+TGG | 0.399232 | 4_4:+26348666 | Msa0676140:CDS |
| TTAAAGTTTACTTCCAAAAT+GGG | 0.399296 | 4_4:+26347093 | Msa0676140:intron |
| CAATAAATTTAATGGCTTTG+AGG | 0.405241 | 4_4:-26348700 | None:intergenic |
| CAAACACTTTATAGCCTCAA+TGG | 0.405480 | 4_4:+26347425 | Msa0676140:CDS |
| TGTTATTGCTTGGGGATTCA+AGG | 0.409886 | 4_4:+26347451 | Msa0676140:CDS |
| AACATTACCTTCTGGTGACC+TGG | 0.416189 | 4_4:-26346528 | None:intergenic |
| ATCTCAGTGCCTCCACAATC+TGG | 0.419190 | 4_4:+26347389 | Msa0676140:CDS |
| GCCAAACCCAAGATTCATAA+AGG | 0.423787 | 4_4:+26347130 | Msa0676140:CDS |
| TACAATATGAAATTCACAAT+TGG | 0.427534 | 4_4:+26348827 | Msa0676140:CDS |
| GACCTTGATGGTTTGGGAGA+TGG | 0.428706 | 4_4:-26347297 | None:intergenic |
| ATAAAGGAAACAAGACTCAT+TGG | 0.440193 | 4_4:+26347146 | Msa0676140:CDS |
| AGACCATTGATTTCCCATTT+GGG | 0.443676 | 4_4:-26347182 | None:intergenic |
| TTCCAAGTGCCATTTGGAAA+AGG | 0.444677 | 4_4:+26348734 | Msa0676140:CDS |
| AAAACATTCACTTCCCAAAT+GGG | 0.451562 | 4_4:+26347169 | Msa0676140:CDS |
| CATTGTTCATTACCTCTTGT+CGG | 0.452200 | 4_4:-26347584 | None:intergenic |
| ACAAGATCTTGTTGCTTTGG+AGG | 0.453040 | 4_4:-26348647 | None:intergenic |
| AAGAACATGCCTCCAGGTTG+TGG | 0.457371 | 4_4:-26347227 | None:intergenic |
| CCTTTCAAATCTTTAGGAAA+GGG | 0.458801 | 4_4:+26348920 | Msa0676140:CDS |
| GTAGGATCTTCTTGCATACC+AGG | 0.469875 | 4_4:-26347509 | None:intergenic |
| AGAAGGAGAGTCTAAGCAAC+AGG | 0.470064 | 4_4:-26349082 | None:intergenic |
| TTACCTCTTGTCGGCATCGG+AGG | 0.472016 | 4_4:-26347575 | None:intergenic |
| ATCTCTGGAGGTCCACAACC+TGG | 0.483993 | 4_4:+26347215 | Msa0676140:CDS |
| TCATTACCTCTTGTCGGCAT+CGG | 0.487489 | 4_4:-26347578 | None:intergenic |
| GCATGAACTCCATGTGACAC+TGG | 0.490852 | 4_4:-26347251 | None:intergenic |
| GGTCTAGTAGAATATATCTC+TGG | 0.497686 | 4_4:+26347200 | Msa0676140:CDS |
| ATGAAATTCACAATTGGAGA+TGG | 0.502014 | 4_4:+26348833 | Msa0676140:CDS |
| AATGGACCCTCTTCAAAGCC+AGG | 0.508731 | 4_4:-26348590 | None:intergenic |
| TCCTTTCAAATCTTTAGGAA+AGG | 0.509600 | 4_4:+26348919 | Msa0676140:CDS |
| AGTGGAGCTTGTTGCAGGTA+GGG | 0.513407 | 4_4:+26348760 | Msa0676140:CDS |
| AAGAAACCCTGGCTTTGAAG+AGG | 0.516304 | 4_4:+26348583 | Msa0676140:CDS |
| CAAACCATCAAGGTCAAACC+TGG | 0.519771 | 4_4:+26347305 | Msa0676140:CDS |
| TCAATAATCCAGCCAGGGAG+TGG | 0.521095 | 4_4:-26348674 | None:intergenic |
| AGGGATTCAATAATCCAGCC+AGG | 0.524844 | 4_4:-26348680 | None:intergenic |
| ATAGCTCTTTCTATCATACA+AGG | 0.527718 | 4_4:+26349005 | Msa0676140:CDS |
| GATAATTTGGTAAGAAACCC+TGG | 0.527834 | 4_4:+26348572 | Msa0676140:intron |
| GGAGTTCATGCAGTTAGACT+TGG | 0.527950 | 4_4:+26347263 | Msa0676140:CDS |
| TCAAGGTCAAACCTGGTCAA+TGG | 0.528995 | 4_4:+26347312 | Msa0676140:CDS |
| CCCTTTCCTAAAGATTTGAA+AGG | 0.532370 | 4_4:-26348920 | None:intergenic |
| AATGGTGATGTTATTGCTTG+GGG | 0.532837 | 4_4:+26347443 | Msa0676140:CDS |
| GCTATAACTTGATCAAGGAC+AGG | 0.534900 | 4_4:-26349055 | None:intergenic |
| CTTCCCAAATGGGAAATCAA+TGG | 0.542169 | 4_4:+26347179 | Msa0676140:CDS |
| GATCTTGTGTCACCACTCCC+TGG | 0.543570 | 4_4:+26348662 | Msa0676140:CDS |
| TACCTCTTGTCGGCATCGGA+GGG | 0.555604 | 4_4:-26347574 | None:intergenic |
| GTTGTGTTGAAAATAGGGAA+TGG | 0.558649 | 4_4:-26348608 | None:intergenic |
| CTCCATCTCCCAAACCATCA+AGG | 0.560309 | 4_4:+26347295 | Msa0676140:CDS |
| ATAGCAACAGCATCCAAAAG+TGG | 0.564034 | 4_4:-26347539 | None:intergenic |
| ACTGGGAAGAACATGCCTCC+AGG | 0.567603 | 4_4:-26347233 | None:intergenic |
| CTCTAATATTAGGAGCGTCT+AGG | 0.567931 | 4_4:+26347339 | Msa0676140:CDS |
| CATGAACTCCATGTGACACT+GGG | 0.571284 | 4_4:-26347250 | None:intergenic |
| GTGATGCTATAACTTGATCA+AGG | 0.574591 | 4_4:-26349060 | None:intergenic |
| ATTAGAGCATACCATTGACC+AGG | 0.578535 | 4_4:-26347323 | None:intergenic |
| TCAATGGTGATGTTATTGCT+TGG | 0.581184 | 4_4:+26347441 | Msa0676140:CDS |
| TACCCTCCGATGCCGACAAG+AGG | 0.581876 | 4_4:+26347572 | Msa0676140:CDS |
| ACATTACCTTCTGGTGACCT+GGG | 0.583918 | 4_4:-26346527 | None:intergenic |
| TGTTCTTAGAATTTGTGCAA+TGG | 0.591903 | 4_4:-26348789 | None:intergenic |
| CAGTGGAGCTTGTTGCAGGT+AGG | 0.597409 | 4_4:+26348759 | Msa0676140:CDS |
| AGGCTATAAAGTGTTTGCAA+AGG | 0.598543 | 4_4:-26347419 | None:intergenic |
| GCCATTTGGAAAAGGAGCAG+TGG | 0.599196 | 4_4:+26348742 | Msa0676140:CDS |
| CTTGATGGTTTGGGAGATGG+AGG | 0.600334 | 4_4:-26347294 | None:intergenic |
| ATGGACCCTCTTCAAAGCCA+GGG | 0.606005 | 4_4:-26348589 | None:intergenic |
| AGAAACCCTGGCTTTGAAGA+GGG | 0.606940 | 4_4:+26348584 | Msa0676140:CDS |
| TATTTGCTAATGTTCATCCC+AGG | 0.608084 | 4_4:+26346510 | Msa0676140:CDS |
| AAGCAATAACATCACCATTG+AGG | 0.621145 | 4_4:-26347439 | None:intergenic |
| ATGTTCTTCCCAGTGTCACA+TGG | 0.627696 | 4_4:+26347242 | Msa0676140:CDS |
| AAAGTTACATTCCATAACCC+TGG | 0.629174 | 4_4:+26347491 | Msa0676140:CDS |
| CTATAACTTGATCAAGGACA+GGG | 0.632443 | 4_4:-26349054 | None:intergenic |
| CTAGTAGAATATATCTCTGG+AGG | 0.635119 | 4_4:+26347203 | Msa0676140:CDS |
| TCCAAAAGTGGACCACAAGT+AGG | 0.642666 | 4_4:-26347527 | None:intergenic |
| TAGGATCTTCTTGCATACCA+GGG | 0.643241 | 4_4:-26347508 | None:intergenic |
| GATGATATTGGATCTATGTG+TGG | 0.643357 | 4_4:+26349031 | Msa0676140:CDS |
| AAAGGAACATCACCAGATTG+TGG | 0.644013 | 4_4:-26347401 | None:intergenic |
| TGGTTGTCATGGATCAATGA+TGG | 0.645175 | 4_4:+26348862 | Msa0676140:CDS |
| ATGCAAGAAGATCCTACTTG+TGG | 0.646402 | 4_4:+26347515 | Msa0676140:CDS |
| GTTCATCCCAGGTCACCAGA+AGG | 0.652959 | 4_4:+26346521 | Msa0676140:CDS |
| GGGATTCAATAATCCAGCCA+GGG | 0.660484 | 4_4:-26348679 | None:intergenic |
| TCTGGAGGTCCACAACCTGG+AGG | 0.689197 | 4_4:+26347218 | Msa0676140:CDS |
| GGAACATCACCAGATTGTGG+AGG | 0.701281 | 4_4:-26347398 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTCTTTTTTTTTTG+TGG | - | chr4_4:26348139-26348158 | None:intergenic | 10.0% |
| !! | GTTATGTACAAAAAATATAT+TGG | - | chr4_4:26347032-26347051 | None:intergenic | 15.0% |
| !!! | ATTAAGTGCTTAATTTTTAT+AGG | + | chr4_4:26348256-26348275 | Msa0676140:intron | 15.0% |
| !!! | CTTGATAATTTTTTGAAAAT+TGG | - | chr4_4:26348523-26348542 | None:intergenic | 15.0% |
| !! | CTTTGAATCAATAAATTTAA+TGG | - | chr4_4:26348711-26348730 | None:intergenic | 15.0% |
| !! | GTACAAAAAATATATTGGAA+AGG | - | chr4_4:26347027-26347046 | None:intergenic | 20.0% |
| !! | TAAGGGAAAAACAAAAAATA+GGG | - | chr4_4:26347076-26347095 | None:intergenic | 20.0% |
| !! | TTAAGGGAAAAACAAAAAAT+AGG | - | chr4_4:26347077-26347096 | None:intergenic | 20.0% |
| !!! | ATTTTGGAAGTAAACTTTAA+GGG | - | chr4_4:26347093-26347112 | None:intergenic | 20.0% |
| !! | TTAAAGTTTACTTCCAAAAT+GGG | + | chr4_4:26347093-26347112 | Msa0676140:intron | 20.0% |
| !! | CTAAATAATATTTCATGTAG+AGG | - | chr4_4:26347764-26347783 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTTTTTGTGG+TGG | - | chr4_4:26348136-26348155 | None:intergenic | 20.0% |
| !! | ATTTCCCTCAAAAAAAATAA+CGG | + | chr4_4:26348209-26348228 | Msa0676140:intron | 20.0% |
| !!! | AATTCCGTTATTTTTTTTGA+GGG | - | chr4_4:26348216-26348235 | None:intergenic | 20.0% |
| !!! | TAATTCCGTTATTTTTTTTG+AGG | - | chr4_4:26348217-26348236 | None:intergenic | 20.0% |
| !!! | TTAAGCACTTAATTTTCAAA+AGG | - | chr4_4:26348249-26348268 | None:intergenic | 20.0% |
| !!! | TAAATAGAGCAATTTTGAAT+TGG | - | chr4_4:26348380-26348399 | None:intergenic | 20.0% |
| !! | AATTCAAAATTGCTCTATTT+AGG | + | chr4_4:26348379-26348398 | Msa0676140:intron | 20.0% |
| !! | AATTAACCTATTTACTTTCT+TGG | + | chr4_4:26348469-26348488 | Msa0676140:intron | 20.0% |
| !! | ATTAACCTATTTACTTTCTT+GGG | + | chr4_4:26348470-26348489 | Msa0676140:intron | 20.0% |
| !!! | AATAAATTTAATGGCTTTGA+GGG | - | chr4_4:26348702-26348721 | None:intergenic | 20.0% |
| !! | TACAATATGAAATTCACAAT+TGG | + | chr4_4:26348827-26348846 | Msa0676140:CDS | 20.0% |
| ! | TACCAGTAACAAATATGAAT+TGG | - | chr4_4:26346568-26346587 | None:intergenic | 25.0% |
| ! | TTGTAAGTTTAGCAAAATCA+TGG | + | chr4_4:26346885-26346904 | Msa0676140:intron | 25.0% |
| ! | AATGTCTTGAATATTATGCT+TGG | - | chr4_4:26346999-26347018 | None:intergenic | 25.0% |
| ! | GATCAGAAATTCAGAATATA+AGG | - | chr4_4:26347054-26347073 | None:intergenic | 25.0% |
| !!! | CATTTTGGAAGTAAACTTTA+AGG | - | chr4_4:26347094-26347113 | None:intergenic | 25.0% |
| ! | CTTAAAGTTTACTTCCAAAA+TGG | + | chr4_4:26347092-26347111 | Msa0676140:intron | 25.0% |
| ! | TTGTTTCCTTTATGAATCTT+GGG | - | chr4_4:26347139-26347158 | None:intergenic | 25.0% |
| ! | TAATGTTGAATTGTTGTGAT+TGG | + | chr4_4:26347675-26347694 | Msa0676140:intron | 25.0% |
| ! | AATACTGTTGAAGATTATGA+TGG | + | chr4_4:26347860-26347879 | Msa0676140:intron | 25.0% |
| ! | ATACTGTTGAAGATTATGAT+GGG | + | chr4_4:26347861-26347880 | Msa0676140:intron | 25.0% |
| ! | AGTGATAAGTACAAAAAAAC+TGG | - | chr4_4:26347918-26347937 | None:intergenic | 25.0% |
| !!! | ACATGACCCATTTTTATATA+AGG | + | chr4_4:26348434-26348453 | Msa0676140:intron | 25.0% |
| ! | GTAGCTCCTTATATAAAAAT+GGG | - | chr4_4:26348443-26348462 | None:intergenic | 25.0% |
| ! | TGTAGCTCCTTATATAAAAA+TGG | - | chr4_4:26348444-26348463 | None:intergenic | 25.0% |
| ! | ACCAAATTATCTGCAAATAT+AGG | - | chr4_4:26348563-26348582 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTGTTGAAAATA+GGG | - | chr4_4:26348616-26348635 | None:intergenic | 25.0% |
| !! | CAATAAATTTAATGGCTTTG+AGG | - | chr4_4:26348703-26348722 | None:intergenic | 25.0% |
| ! | TTCATATTGTAGACTTTGTT+TGG | - | chr4_4:26348818-26348837 | None:intergenic | 25.0% |
| ! | AAAGTTCCTTTCAAATCTTT+AGG | + | chr4_4:26348914-26348933 | Msa0676140:CDS | 25.0% |
| ! | TGCCAATTCATATTTGTTAC+TGG | + | chr4_4:26346563-26346582 | Msa0676140:intron | 30.0% |
| CAATGTAATCAGATTTGTGA+CGG | - | chr4_4:26346765-26346784 | None:intergenic | 30.0% | |
| TAAGTTTAGCAAAATCATGG+TGG | + | chr4_4:26346888-26346907 | Msa0676140:intron | 30.0% | |
| ! | AGTTTTTGCCAAAATGATAG+TGG | + | chr4_4:26346941-26346960 | Msa0676140:intron | 30.0% |
| CTTGAATATTATGCTTGGAT+TGG | - | chr4_4:26346994-26347013 | None:intergenic | 30.0% | |
| CTTGTTTCCTTTATGAATCT+TGG | - | chr4_4:26347140-26347159 | None:intergenic | 30.0% | |
| ATAAAGGAAACAAGACTCAT+TGG | + | chr4_4:26347146-26347165 | Msa0676140:CDS | 30.0% | |
| AAAACATTCACTTCCCAAAT+GGG | + | chr4_4:26347169-26347188 | Msa0676140:CDS | 30.0% | |
| CAATGGTATGCTCTAATATT+AGG | + | chr4_4:26347329-26347348 | Msa0676140:CDS | 30.0% | |
| ATGAACAATGTCCATTTATC+TGG | + | chr4_4:26347597-26347616 | Msa0676140:intron | 30.0% | |
| CGAATAGAGTGTATTAACAT+TGG | + | chr4_4:26347823-26347842 | Msa0676140:intron | 30.0% | |
| ATAAGTACAAAAAAACTGGC+GGG | - | chr4_4:26347914-26347933 | None:intergenic | 30.0% | |
| GATAAGTACAAAAAAACTGG+CGG | - | chr4_4:26347915-26347934 | None:intergenic | 30.0% | |
| !!! | TCTTTTTTTTTTGTGGTGGT+CGG | - | chr4_4:26348132-26348151 | None:intergenic | 30.0% |
| GCCTATATTTGCAGATAATT+TGG | + | chr4_4:26348559-26348578 | Msa0676140:intron | 30.0% | |
| !! | CCATTTGTTGTGTTGAAAAT+AGG | - | chr4_4:26348617-26348636 | None:intergenic | 30.0% |
| ! | CCTATTTTCAACACAACAAA+TGG | + | chr4_4:26348614-26348633 | Msa0676140:CDS | 30.0% |
| TGTTCTTAGAATTTGTGCAA+TGG | - | chr4_4:26348792-26348811 | None:intergenic | 30.0% | |
| ATGAAATTCACAATTGGAGA+TGG | + | chr4_4:26348833-26348852 | Msa0676140:CDS | 30.0% | |
| ACAATTGGAGATGGAAAAAA+TGG | + | chr4_4:26348842-26348861 | Msa0676140:CDS | 30.0% | |
| ! | TCCTTTCAAATCTTTAGGAA+AGG | + | chr4_4:26348919-26348938 | Msa0676140:CDS | 30.0% |
| ! | CCTTTCAAATCTTTAGGAAA+GGG | + | chr4_4:26348920-26348939 | Msa0676140:CDS | 30.0% |
| ATAGCTCTTTCTATCATACA+AGG | + | chr4_4:26349005-26349024 | Msa0676140:CDS | 30.0% | |
| ! | CATACAAGGATTGATGATAT+TGG | + | chr4_4:26349019-26349038 | Msa0676140:CDS | 30.0% |
| ! | TATTTGCTAATGTTCATCCC+AGG | + | chr4_4:26346510-26346529 | Msa0676140:CDS | 35.0% |
| TAGAGTTGAACATTACCTTC+TGG | - | chr4_4:26346539-26346558 | None:intergenic | 35.0% | |
| ACACTTCATATCAGACATGT+CGG | + | chr4_4:26346719-26346738 | Msa0676140:intron | 35.0% | |
| ! | ACAGTGAACCACTATCATTT+TGG | - | chr4_4:26346952-26346971 | None:intergenic | 35.0% |
| ! | GAATATTATGCTTGGATTGG+AGG | - | chr4_4:26346991-26347010 | None:intergenic | 35.0% |
| ! | TCTCTTCAAAGTTCCCATTT+TGG | - | chr4_4:26347109-26347128 | None:intergenic | 35.0% |
| TCCTTTATGAATCTTGGGTT+TGG | - | chr4_4:26347134-26347153 | None:intergenic | 35.0% | |
| GAAAACATTCACTTCCCAAA+TGG | + | chr4_4:26347168-26347187 | Msa0676140:CDS | 35.0% | |
| !! | AGACCATTGATTTCCCATTT+GGG | - | chr4_4:26347185-26347204 | None:intergenic | 35.0% |
| !! | TAGACCATTGATTTCCCATT+TGG | - | chr4_4:26347186-26347205 | None:intergenic | 35.0% |
| GGTCTAGTAGAATATATCTC+TGG | + | chr4_4:26347200-26347219 | Msa0676140:CDS | 35.0% | |
| CTAGTAGAATATATCTCTGG+AGG | + | chr4_4:26347203-26347222 | Msa0676140:CDS | 35.0% | |
| ! | AGGCTATAAAGTGTTTGCAA+AGG | - | chr4_4:26347422-26347441 | None:intergenic | 35.0% |
| CAAACACTTTATAGCCTCAA+TGG | + | chr4_4:26347425-26347444 | Msa0676140:CDS | 35.0% | |
| AAGCAATAACATCACCATTG+AGG | - | chr4_4:26347442-26347461 | None:intergenic | 35.0% | |
| ! | TCAATGGTGATGTTATTGCT+TGG | + | chr4_4:26347441-26347460 | Msa0676140:CDS | 35.0% |
| ! | CAATGGTGATGTTATTGCTT+GGG | + | chr4_4:26347442-26347461 | Msa0676140:CDS | 35.0% |
| ! | AATGGTGATGTTATTGCTTG+GGG | + | chr4_4:26347443-26347462 | Msa0676140:CDS | 35.0% |
| AAAGTTACATTCCATAACCC+TGG | + | chr4_4:26347491-26347510 | Msa0676140:CDS | 35.0% | |
| CATTGTTCATTACCTCTTGT+CGG | - | chr4_4:26347587-26347606 | None:intergenic | 35.0% | |
| !! | ACAAGCTGATTTGTTGAGAT+TGG | - | chr4_4:26347652-26347671 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGTCG+GGG | - | chr4_4:26348130-26348149 | None:intergenic | 35.0% |
| !!! | CTTTTTTTTTTGTGGTGGTC+GGG | - | chr4_4:26348131-26348150 | None:intergenic | 35.0% |
| GACTTCCCAAGAAAGTAAAT+AGG | - | chr4_4:26348478-26348497 | None:intergenic | 35.0% | |
| GATAATTTGGTAAGAAACCC+TGG | + | chr4_4:26348572-26348591 | Msa0676140:intron | 35.0% | |
| GTTGTGTTGAAAATAGGGAA+TGG | - | chr4_4:26348611-26348630 | None:intergenic | 35.0% | |
| ! | AAGAATTTCCAAGTGCCATT+TGG | + | chr4_4:26348728-26348747 | Msa0676140:CDS | 35.0% |
| GATGGAAAAAATGGTTGTCA+TGG | + | chr4_4:26348851-26348870 | Msa0676140:CDS | 35.0% | |
| CCCTTTCCTAAAGATTTGAA+AGG | - | chr4_4:26348923-26348942 | None:intergenic | 35.0% | |
| GATGATATTGGATCTATGTG+TGG | + | chr4_4:26349031-26349050 | Msa0676140:CDS | 35.0% | |
| CTATAACTTGATCAAGGACA+GGG | - | chr4_4:26349057-26349076 | None:intergenic | 35.0% | |
| GTGATGCTATAACTTGATCA+AGG | - | chr4_4:26349063-26349082 | None:intergenic | 35.0% | |
| GCCAAACCCAAGATTCATAA+AGG | + | chr4_4:26347130-26347149 | Msa0676140:CDS | 40.0% | |
| CTTCCCAAATGGGAAATCAA+TGG | + | chr4_4:26347179-26347198 | Msa0676140:CDS | 40.0% | |
| ! | AGGTTTGACCTTGATGGTTT+GGG | - | chr4_4:26347306-26347325 | None:intergenic | 40.0% |
| ATTAGAGCATACCATTGACC+AGG | - | chr4_4:26347326-26347345 | None:intergenic | 40.0% | |
| !! | CTCTAATATTAGGAGCGTCT+AGG | + | chr4_4:26347339-26347358 | Msa0676140:CDS | 40.0% |
| AAAGGAACATCACCAGATTG+TGG | - | chr4_4:26347404-26347423 | None:intergenic | 40.0% | |
| TGTTATTGCTTGGGGATTCA+AGG | + | chr4_4:26347451-26347470 | Msa0676140:CDS | 40.0% | |
| TAGGATCTTCTTGCATACCA+GGG | - | chr4_4:26347511-26347530 | None:intergenic | 40.0% | |
| ATGCAAGAAGATCCTACTTG+TGG | + | chr4_4:26347515-26347534 | Msa0676140:CDS | 40.0% | |
| ATAGCAACAGCATCCAAAAG+TGG | - | chr4_4:26347542-26347561 | None:intergenic | 40.0% | |
| CTGCAGAGAATCCAGATAAA+TGG | - | chr4_4:26347611-26347630 | None:intergenic | 40.0% | |
| ATTCTCTGCAGTCATGCAAA+AGG | + | chr4_4:26347620-26347639 | Msa0676140:intron | 40.0% | |
| ! | TGAGCTTATCTCAGTTGGTA+AGG | + | chr4_4:26348091-26348110 | Msa0676140:intron | 40.0% |
| TTGCTTAACATGTGCCCTAA+GGG | + | chr4_4:26348402-26348421 | Msa0676140:intron | 40.0% | |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr4_4:26348419-26348438 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr4_4:26348420-26348439 | None:intergenic | 40.0% |
| !! | ACAAGATCTTGTTGCTTTGG+AGG | - | chr4_4:26348650-26348669 | None:intergenic | 40.0% |
| ! | GACACAAGATCTTGTTGCTT+TGG | - | chr4_4:26348653-26348672 | None:intergenic | 40.0% |
| !! | TTCCAAGTGCCATTTGGAAA+AGG | + | chr4_4:26348734-26348753 | Msa0676140:CDS | 40.0% |
| TGGTTGTCATGGATCAATGA+TGG | + | chr4_4:26348862-26348881 | Msa0676140:CDS | 40.0% | |
| GCTATAACTTGATCAAGGAC+AGG | - | chr4_4:26349058-26349077 | None:intergenic | 40.0% | |
| ACATTACCTTCTGGTGACCT+GGG | - | chr4_4:26346530-26346549 | None:intergenic | 45.0% | |
| AACATTACCTTCTGGTGACC+TGG | - | chr4_4:26346531-26346550 | None:intergenic | 45.0% | |
| ! | ATGAAGTGTTCGTGCTACAG+AGG | - | chr4_4:26346708-26346727 | None:intergenic | 45.0% |
| ATGTTCTTCCCAGTGTCACA+TGG | + | chr4_4:26347242-26347261 | Msa0676140:CDS | 45.0% | |
| CATGAACTCCATGTGACACT+GGG | - | chr4_4:26347253-26347272 | None:intergenic | 45.0% | |
| GGAGTTCATGCAGTTAGACT+TGG | + | chr4_4:26347263-26347282 | Msa0676140:CDS | 45.0% | |
| ! | CAGGTTTGACCTTGATGGTT+TGG | - | chr4_4:26347307-26347326 | None:intergenic | 45.0% |
| CAAACCATCAAGGTCAAACC+TGG | + | chr4_4:26347305-26347324 | Msa0676140:CDS | 45.0% | |
| TTGACCAGGTTTGACCTTGA+TGG | - | chr4_4:26347312-26347331 | None:intergenic | 45.0% | |
| TCAAGGTCAAACCTGGTCAA+TGG | + | chr4_4:26347312-26347331 | Msa0676140:CDS | 45.0% | |
| CTTCTTGCATACCAGGGTTA+TGG | - | chr4_4:26347505-26347524 | None:intergenic | 45.0% | |
| GTAGGATCTTCTTGCATACC+AGG | - | chr4_4:26347512-26347531 | None:intergenic | 45.0% | |
| ! | TCCTACTTGTGGTCCACTTT+TGG | + | chr4_4:26347526-26347545 | Msa0676140:CDS | 45.0% |
| TCCAAAAGTGGACCACAAGT+AGG | - | chr4_4:26347530-26347549 | None:intergenic | 45.0% | |
| TCATTACCTCTTGTCGGCAT+CGG | - | chr4_4:26347581-26347600 | None:intergenic | 45.0% | |
| CCAACTGAGATAAGCTCATG+AGG | - | chr4_4:26348089-26348108 | None:intergenic | 45.0% | |
| CCTCATGAGCTTATCTCAGT+TGG | + | chr4_4:26348086-26348105 | Msa0676140:intron | 45.0% | |
| GTTGCTTAACATGTGCCCTA+AGG | + | chr4_4:26348401-26348420 | Msa0676140:intron | 45.0% | |
| !! | AAGAAACCCTGGCTTTGAAG+AGG | + | chr4_4:26348583-26348602 | Msa0676140:CDS | 45.0% |
| !! | AGAAACCCTGGCTTTGAAGA+GGG | + | chr4_4:26348584-26348603 | Msa0676140:CDS | 45.0% |
| GGGATTCAATAATCCAGCCA+GGG | - | chr4_4:26348682-26348701 | None:intergenic | 45.0% | |
| AGGGATTCAATAATCCAGCC+AGG | - | chr4_4:26348683-26348702 | None:intergenic | 45.0% | |
| ! | CTCCTTTTCCAAATGGCACT+TGG | - | chr4_4:26348739-26348758 | None:intergenic | 45.0% |
| ! | TCCACTGCTCCTTTTCCAAA+TGG | - | chr4_4:26348746-26348765 | None:intergenic | 45.0% |
| AGAAGGAGAGTCTAAGCAAC+AGG | - | chr4_4:26349085-26349104 | None:intergenic | 45.0% | |
| !!! | TATTTTTTTCAAATTATTAT+TGG | + | chr4_4:26346793-26346812 | Msa0676140:intron | 5.0% |
| !! | AAAAAAATAATAAATAGTTA+AGG | + | chr4_4:26348039-26348058 | Msa0676140:intron | 5.0% |
| !! | AAAAAATAATAAATAGTTAA+GGG | + | chr4_4:26348040-26348059 | Msa0676140:intron | 5.0% |
| AGACATGTCAGTGTCGTGTC+TGG | + | chr4_4:26346819-26346838 | Msa0676140:intron | 50.0% | |
| AAGAACATGCCTCCAGGTTG+TGG | - | chr4_4:26347230-26347249 | None:intergenic | 50.0% | |
| GCATGAACTCCATGTGACAC+TGG | - | chr4_4:26347254-26347273 | None:intergenic | 50.0% | |
| ! | CTTGATGGTTTGGGAGATGG+AGG | - | chr4_4:26347297-26347316 | None:intergenic | 50.0% |
| CTCCATCTCCCAAACCATCA+AGG | + | chr4_4:26347295-26347314 | Msa0676140:CDS | 50.0% | |
| ! | GACCTTGATGGTTTGGGAGA+TGG | - | chr4_4:26347300-26347319 | None:intergenic | 50.0% |
| ATCTCAGTGCCTCCACAATC+TGG | + | chr4_4:26347389-26347408 | Msa0676140:CDS | 50.0% | |
| GGAACATCACCAGATTGTGG+AGG | - | chr4_4:26347401-26347420 | None:intergenic | 50.0% | |
| ATGGACCCTCTTCAAAGCCA+GGG | - | chr4_4:26348592-26348611 | None:intergenic | 50.0% | |
| AATGGACCCTCTTCAAAGCC+AGG | - | chr4_4:26348593-26348612 | None:intergenic | 50.0% | |
| TCAATAATCCAGCCAGGGAG+TGG | - | chr4_4:26348677-26348696 | None:intergenic | 50.0% | |
| GCCATTTGGAAAAGGAGCAG+TGG | + | chr4_4:26348742-26348761 | Msa0676140:CDS | 50.0% | |
| !! | AGTGGAGCTTGTTGCAGGTA+GGG | + | chr4_4:26348760-26348779 | Msa0676140:CDS | 50.0% |
| GTTCATCCCAGGTCACCAGA+AGG | + | chr4_4:26346521-26346540 | Msa0676140:CDS | 55.0% | |
| ! | ATCTCTGGAGGTCCACAACC+TGG | + | chr4_4:26347215-26347234 | Msa0676140:CDS | 55.0% |
| ACTGGGAAGAACATGCCTCC+AGG | - | chr4_4:26347236-26347255 | None:intergenic | 55.0% | |
| ! | TACCTCTTGTCGGCATCGGA+GGG | - | chr4_4:26347577-26347596 | None:intergenic | 55.0% |
| ! | TTACCTCTTGTCGGCATCGG+AGG | - | chr4_4:26347578-26347597 | None:intergenic | 55.0% |
| GATCTTGTGTCACCACTCCC+TGG | + | chr4_4:26348662-26348681 | Msa0676140:CDS | 55.0% | |
| !! | CAGTGGAGCTTGTTGCAGGT+AGG | + | chr4_4:26348759-26348778 | Msa0676140:CDS | 55.0% |
| TCTGGAGGTCCACAACCTGG+AGG | + | chr4_4:26347218-26347237 | Msa0676140:CDS | 60.0% | |
| TACCCTCCGATGCCGACAAG+AGG | + | chr4_4:26347572-26347591 | Msa0676140:CDS | 60.0% | |
| TTGTGTCACCACTCCCTGGC+TGG | + | chr4_4:26348666-26348685 | Msa0676140:CDS | 60.0% | |
| !! | GGAGCAGTGGAGCTTGTTGC+AGG | + | chr4_4:26348755-26348774 | Msa0676140:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 26346455 | 26349104 | 26346455 | ID=Msa0676140;Name=Msa0676140 |
| chr4_4 | mRNA | 26346455 | 26349104 | 26346455 | ID=Msa0676140-mRNA-1;Parent=Msa0676140;Name=Msa0676140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.5|0.33|1|1|1|3|11|367 |
| chr4_4 | exon | 26346455 | 26346542 | 26346455 | ID=Msa0676140-mRNA-1:exon:7028;Parent=Msa0676140-mRNA-1 |
| chr4_4 | exon | 26347099 | 26347593 | 26347099 | ID=Msa0676140-mRNA-1:exon:7029;Parent=Msa0676140-mRNA-1 |
| chr4_4 | exon | 26348573 | 26349104 | 26348573 | ID=Msa0676140-mRNA-1:exon:7030;Parent=Msa0676140-mRNA-1 |
| chr4_4 | CDS | 26346455 | 26346542 | 26346455 | ID=Msa0676140-mRNA-1:cds;Parent=Msa0676140-mRNA-1 |
| chr4_4 | CDS | 26347099 | 26347593 | 26347099 | ID=Msa0676140-mRNA-1:cds;Parent=Msa0676140-mRNA-1 |
| chr4_4 | CDS | 26348573 | 26349093 | 26348573 | ID=Msa0676140-mRNA-1:cds;Parent=Msa0676140-mRNA-1 |
| chr4_4 | three_prime_UTR | 26349094 | 26349104 | 26349094 | ID=Msa0676140-mRNA-1:three_prime_utr;Parent=Msa0676140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
