AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0758150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758150 MtrunA17_Chr5g0404721 96.375 331 12 0 1 331 1 331 0.0 660
Msa0758150 MtrunA17_Chr8g0372601 83.228 316 53 0 15 330 15 330 0.0 560
Msa0758150 MtrunA17_Chr1g0155611 62.252 302 113 1 30 330 46 347 8.28e-132 379
Msa0758150 MtrunA17_Chr5g0400331 54.072 307 134 3 30 330 26 331 1.55e-112 330
Msa0758150 MtrunA17_Chr2g0320031 50.464 323 146 2 8 330 11 319 1.57e-112 329
Msa0758150 MtrunA17_Chr7g0258811 50.000 326 157 3 7 330 50 371 1.91e-112 331
Msa0758150 MtrunA17_Chr4g0013171 53.067 326 140 5 7 330 7 321 2.41e-112 328
Msa0758150 MtrunA17_Chr5g0438021 50.153 327 149 4 6 330 11 325 4.41e-112 328
Msa0758150 MtrunA17_Chr2g0320061 50.464 323 145 2 8 330 11 318 1.12e-111 327
Msa0758150 MtrunA17_Chr2g0320071 49.691 324 153 3 7 330 4 317 5.56e-111 325
Msa0758150 MtrunA17_Chr3g0114451 52.778 324 143 3 7 330 5 318 5.56e-111 325
Msa0758150 MtrunA17_Chr2g0320051 51.475 305 141 1 26 330 21 318 7.63e-111 325
Msa0758150 MtrunA17_Chr2g0292251 52.131 305 145 1 27 330 25 329 7.96e-110 323
Msa0758150 MtrunA17_Chr2g0292111 52.131 305 145 1 27 330 26 330 1.47e-109 323
Msa0758150 MtrunA17_Chr2g0292181 51.475 305 147 1 27 330 35 339 8.54e-109 321
Msa0758150 MtrunA17_Chr2g0292241 51.307 306 148 1 27 331 26 331 5.81e-108 319
Msa0758150 MtrunA17_Chr1g0175561 47.892 332 164 3 1 330 2 326 1.35e-107 317
Msa0758150 MtrunA17_Chr2g0291751 50.000 314 151 2 18 330 22 330 4.80e-107 317
Msa0758150 MtrunA17_Chr2g0320101 49.383 324 154 3 7 330 4 317 6.98e-107 315
Msa0758150 MtrunA17_Chr3g0106921 50.987 304 138 4 30 330 25 320 1.22e-106 314
Msa0758150 MtrunA17_Chr2g0299691 52.131 305 140 2 30 330 56 358 1.60e-106 315
Msa0758150 MtrunA17_Chr2g0292151 50.820 305 149 1 27 330 26 330 2.04e-106 315
Msa0758150 MtrunA17_Chr2g0292091 50.000 306 150 2 28 330 20 325 2.21e-106 314
Msa0758150 MtrunA17_Chr2g0292101 50.654 306 148 2 28 330 21 326 2.86e-106 314
Msa0758150 MtrunA17_Chr3g0129051 48.000 325 156 4 8 330 9 322 5.31e-106 313
Msa0758150 MtrunA17_Chr2g0292211 50.492 305 150 1 27 330 37 341 1.56e-105 313
Msa0758150 MtrunA17_Chr4g0013181 54.181 299 127 4 34 330 63 353 2.42e-105 312
Msa0758150 MtrunA17_Chr2g0320091 48.916 323 153 5 9 330 7 318 7.48e-105 310
Msa0758150 MtrunA17_Chr5g0432441 50.606 330 143 6 8 330 10 326 1.47e-104 309
Msa0758150 MtrunA17_Chr7g0244461 49.180 305 147 2 26 330 16 312 3.21e-104 308
Msa0758150 MtrunA17_Chr4g0043391 45.946 333 165 3 1 330 4 324 4.28e-104 308
Msa0758150 MtrunA17_Chr4g0070951 51.645 304 142 2 30 330 28 329 1.13e-103 307
Msa0758150 MtrunA17_Chr5g0402571 50.462 325 152 4 7 330 10 326 1.51e-103 306
Msa0758150 MtrunA17_Chr4g0068621 50.000 302 147 2 30 330 38 336 2.17e-103 306
Msa0758150 MtrunA17_Chr3g0129061 48.923 325 148 4 8 330 14 322 3.21e-103 305
Msa0758150 MtrunA17_Chr4g0038171 45.345 333 167 3 1 330 1 321 1.72e-102 303
Msa0758150 MtrunA17_Chr5g0432351 52.131 305 134 5 30 330 25 321 2.16e-102 303
Msa0758150 MtrunA17_Chr4g0038161 47.385 325 155 4 9 330 9 320 8.31e-102 302
Msa0758150 MtrunA17_Chr4g0038151 48.534 307 148 3 27 330 22 321 1.07e-101 301
Msa0758150 MtrunA17_Chr3g0129041 49.074 324 148 4 9 330 14 322 1.92e-101 301
Msa0758150 MtrunA17_Chr2g0292271 46.749 323 165 2 9 330 14 330 3.40e-101 301
Msa0758150 MtrunA17_Chr5g0432341 51.803 305 135 5 30 330 25 321 4.21e-101 300
Msa0758150 MtrunA17_Chr5g0402581 49.231 325 156 4 7 330 10 326 1.77e-100 299
Msa0758150 MtrunA17_Chr7g0224371 50.166 301 133 4 34 330 35 322 2.04e-100 298
Msa0758150 MtrunA17_Chr7g0244451 46.847 333 152 4 2 330 5 316 9.36e-100 296
Msa0758150 MtrunA17_Chr4g0013191 49.836 305 140 5 30 330 45 340 1.28e-98 295
Msa0758150 MtrunA17_Chr5g0432331 50.820 305 138 5 30 330 56 352 2.33e-98 294
Msa0758150 MtrunA17_Chr2g0292261 49.329 298 150 1 34 330 33 330 4.64e-98 293
Msa0758150 MtrunA17_Chr3g0106901 48.148 324 151 3 7 330 17 323 4.67e-97 290
Msa0758150 MtrunA17_Chr2g0292291 46.319 326 166 3 14 330 7 332 5.28e-97 291
Msa0758150 MtrunA17_Chr4g0013201 48.013 302 147 3 30 330 46 338 5.12e-96 288
Msa0758150 MtrunA17_Chr4g0013721 48.344 302 152 3 30 331 100 397 5.11e-95 288
Msa0758150 MtrunA17_Chr5g0421411 48.582 282 141 3 53 330 4 285 2.07e-94 282
Msa0758150 MtrunA17_Chr4g0013821 46.512 301 157 3 30 330 28 324 2.44e-93 281
Msa0758150 MtrunA17_Chr3g0107881 45.062 324 165 5 11 330 10 324 3.59e-93 280
Msa0758150 MtrunA17_Chr2g0322861 46.246 333 168 6 1 331 64 387 7.54e-93 281
Msa0758150 MtrunA17_Chr1g0213061 44.892 323 166 4 10 330 9 321 5.89e-92 277
Msa0758150 MtrunA17_Chr4g0024121 47.020 302 157 3 30 330 27 326 5.08e-89 270
Msa0758150 MtrunA17_Chr2g0279041 45.946 333 158 7 7 330 6 325 4.85e-87 264
Msa0758150 MtrunA17_Chr3g0128061 47.492 299 155 2 34 331 30 327 5.82e-87 264
Msa0758150 MtrunA17_Chr7g0268501 44.785 326 172 5 5 330 3 320 4.18e-86 262
Msa0758150 MtrunA17_Chr7g0268521 44.785 326 172 5 5 330 3 320 4.18e-86 262
Msa0758150 MtrunA17_Chr4g0076211 45.118 297 153 5 35 330 46 333 9.73e-83 254
Msa0758150 MtrunA17_Chr1g0194151 46.512 301 156 3 34 330 34 333 1.85e-82 253
Msa0758150 MtrunA17_Chr5g0405991 42.424 330 173 6 1 330 4 316 1.52e-81 250
Msa0758150 MtrunA17_Chr1g0164891 45.847 301 158 5 34 330 93 392 4.44e-81 251
Msa0758150 MtrunA17_Chr2g0296621 45.425 306 156 7 26 330 46 341 9.76e-81 249
Msa0758150 MtrunA17_Chr1g0204011 42.154 325 175 7 7 330 10 322 1.31e-80 248
Msa0758150 MtrunA17_Chr8g0371381 44.482 299 155 6 34 330 30 319 1.46e-80 248
Msa0758150 MtrunA17_Chr1g0194271 45.130 308 157 4 34 330 34 340 9.60e-80 246
Msa0758150 MtrunA17_Chr4g0063671 41.493 335 176 6 1 330 1 320 1.35e-78 243
Msa0758150 MtrunA17_Chr7g0254231 41.118 304 168 5 28 331 20 312 1.15e-76 237
Msa0758150 MtrunA17_Chr6g0460711 42.424 297 164 5 34 330 25 314 2.03e-76 237
Msa0758150 MtrunA17_Chr6g0477071 41.196 301 165 6 30 330 54 342 5.14e-76 237
Msa0758150 MtrunA17_Chr5g0432401 42.020 307 127 5 27 329 26 285 2.92e-75 233
Msa0758150 MtrunA17_Chr1g0188431 39.628 323 183 6 8 330 17 327 8.69e-75 233
Msa0758150 MtrunA17_Chr1g0181511 42.193 301 162 5 34 330 31 323 1.27e-74 233
Msa0758150 MtrunA17_Chr1g0157051 40.426 329 184 6 1 329 1 317 5.70e-74 231
Msa0758150 MtrunA17_Chr8g0364291 40.432 324 186 4 10 331 7 325 9.52e-74 230
Msa0758150 MtrunA17_Chr7g0254201 42.088 297 164 6 34 330 24 312 2.32e-73 229
Msa0758150 MtrunA17_Chr4g0046131 39.104 335 188 6 7 326 9 342 1.63e-71 225
Msa0758150 MtrunA17_Chr7g0225221 41.722 302 169 4 30 330 25 320 4.81e-71 223
Msa0758150 MtrunA17_Chr5g0401431 39.319 323 189 5 8 326 6 325 1.32e-70 222
Msa0758150 MtrunA17_Chr1g0181431 40.667 300 168 4 34 330 31 323 2.72e-70 221
Msa0758150 MtrunA17_Chr1g0148021 39.818 329 188 5 5 330 7 328 9.13e-70 220
Msa0758150 MtrunA17_Chr4g0075241 38.591 298 179 3 34 330 33 327 5.55e-69 218
Msa0758150 MtrunA17_Chr6g0467121 37.647 340 185 9 2 330 40 363 7.14e-69 219
Msa0758150 MtrunA17_Chr1g0181481 40.333 300 169 4 34 330 31 323 2.84e-68 216
Msa0758150 MtrunA17_Chr2g0278671 41.694 307 166 6 30 330 24 323 5.65e-68 215
Msa0758150 MtrunA17_Chr6g0467251 39.394 330 185 7 5 331 12 329 5.75e-68 216
Msa0758150 MtrunA17_Chr6g0467161 36.254 331 191 6 8 330 18 336 7.73e-68 216
Msa0758150 MtrunA17_Chr4g0072091 39.203 301 174 4 34 330 28 323 1.68e-67 214
Msa0758150 MtrunA17_Chr2g0316481 36.812 345 183 7 18 329 63 405 2.54e-67 216
Msa0758150 MtrunA17_Chr2g0316791 37.176 347 179 8 18 329 63 405 2.80e-67 216
Msa0758150 MtrunA17_Chr1g0197411 36.474 329 201 5 5 330 7 330 3.78e-67 214
Msa0758150 MtrunA17_Chr2g0279061 47.126 261 128 5 74 330 12 266 9.57e-67 210
Msa0758150 MtrunA17_Chr3g0136751 41.667 300 166 4 34 330 29 322 1.31e-66 212
Msa0758150 MtrunA17_Chr2g0316831 37.101 345 182 8 18 329 99 441 1.96e-66 215
Msa0758150 MtrunA17_Chr4g0053871 39.815 324 184 6 6 326 5 320 1.13e-65 209
Msa0758150 MtrunA17_Chr2g0329641 37.092 337 193 9 5 330 7 335 1.19e-65 210
Msa0758150 MtrunA17_Chr2g0316191 35.549 346 187 7 18 329 63 406 5.45e-65 210
Msa0758150 MtrunA17_Chr4g0074851 36.308 325 194 5 8 326 7 324 1.44e-63 204
Msa0758150 MtrunA17_Chr6g0451571 34.862 327 201 6 7 330 17 334 5.32e-63 203
Msa0758150 MtrunA17_Chr3g0114461 51.282 195 88 1 136 330 5 192 5.36e-60 191
Msa0758150 MtrunA17_Chr2g0311251 35.976 328 175 7 34 329 15 339 9.68e-60 195
Msa0758150 MtrunA17_Chr2g0311241 33.161 386 181 8 18 329 47 429 1.70e-59 197
Msa0758150 MtrunA17_Chr5g0413051 36.246 309 189 5 28 330 71 377 1.48e-58 193
Msa0758150 MtrunA17_Chr2g0292281 45.238 210 102 3 123 330 18 216 8.47e-51 169
Msa0758150 MtrunA17_Chr2g0316811 38.655 238 127 4 18 237 37 273 2.54e-47 162
Msa0758150 MtrunA17_Chr4g0004591 30.380 316 159 4 34 329 81 355 2.32e-41 147
Msa0758150 MtrunA17_Chr3g0114491 60.550 109 43 0 30 138 18 126 7.05e-41 139
Msa0758150 MtrunA17_Chr2g0316141 31.142 289 146 8 76 331 11 279 3.06e-37 134
Msa0758150 MtrunA17_Chr2g0316181 31.142 289 146 8 76 331 11 279 3.06e-37 134
Msa0758150 MtrunA17_Chr1g0181501 36.269 193 113 4 141 330 4 189 7.92e-33 120
Msa0758150 MtrunA17_Chr5g0432321 48.387 124 56 2 151 274 17 132 3.94e-29 108
Msa0758150 MtrunA17_Chr3g0104101 41.844 141 78 3 194 330 9 149 3.68e-26 101
Msa0758150 MtrunA17_Chr1g0181491 43.925 107 58 2 34 140 16 120 4.79e-22 90.5
Msa0758150 MtrunA17_Chr6g0468731 61.972 71 23 2 69 139 22 88 2.13e-21 87.0
Msa0758150 MtrunA17_Chr4g0013811 53.333 75 35 0 140 214 5 79 1.17e-19 82.0
Msa0758150 MtrunA17_Chr7g0254181 40.541 111 58 2 91 196 15 122 1.33e-18 81.6
Msa0758150 MtrunA17_Chr5g0432361 42.991 107 54 3 224 329 8 108 6.15e-18 78.2
Msa0758150 MtrunA17_Chr3g0137751 28.137 263 122 8 61 311 105 312 3.31e-17 80.9
Msa0758150 MtrunA17_Chr7g0254171 50.000 74 36 1 75 148 3 75 9.21e-17 75.9
Msa0758150 MtrunA17_Chr7g0268491 52.000 75 34 2 256 330 25 97 4.78e-16 72.8
Msa0758150 MtrunA17_Chr1g0196191 52.308 65 30 1 72 136 27 90 4.37e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0758150 AT5G66390.1 74.551 334 82 2 1 331 1 334 0.0 528
Msa0758150 AT4G36430.1 69.497 318 97 0 14 331 14 331 4.60e-170 476
Msa0758150 AT2G18150.1 67.372 331 102 1 7 331 7 337 3.12e-169 474
Msa0758150 AT2G18140.1 63.444 331 116 1 6 331 6 336 5.76e-157 443
Msa0758150 AT3G50990.1 63.804 326 113 1 11 331 17 342 2.18e-152 431
Msa0758150 AT1G44970.1 65.232 302 104 1 30 330 45 346 2.89e-140 401
Msa0758150 AT2G35380.1 53.896 308 133 3 30 330 30 335 2.69e-110 324
Msa0758150 AT5G06720.1 50.993 302 147 1 30 330 32 333 1.07e-109 323
Msa0758150 AT5G05340.1 48.860 307 147 3 26 330 26 324 7.83e-106 313
Msa0758150 AT1G14550.1 48.148 324 155 3 8 330 10 321 1.13e-104 310
Msa0758150 AT4G08770.1 50.164 305 149 2 30 331 24 328 1.34e-104 310
Msa0758150 AT5G19890.1 50.621 322 150 4 13 331 13 328 1.58e-104 309
Msa0758150 AT4G08780.1 50.654 306 146 3 30 331 24 328 2.12e-104 310
Msa0758150 AT1G49570.1 53.872 297 133 3 33 326 51 346 6.44e-104 308
Msa0758150 AT3G49110.1 48.882 313 157 2 22 331 25 337 1.66e-102 305
Msa0758150 AT3G32980.1 49.508 305 151 2 30 331 31 335 2.52e-102 305
Msa0758150 AT5G06730.1 47.020 302 159 1 30 330 33 334 1.28e-101 303
Msa0758150 AT5G58400.1 45.566 327 161 5 7 330 13 325 3.80e-101 301
Msa0758150 AT2G38390.1 47.712 306 158 2 27 330 28 333 5.24e-101 301
Msa0758150 AT4G16270.1 50.671 298 143 3 34 330 54 348 8.03e-100 298
Msa0758150 AT3G49120.1 49.180 305 152 2 30 331 32 336 3.79e-99 296
Msa0758150 AT2G38380.1 47.855 303 156 2 30 330 31 333 6.08e-97 291
Msa0758150 AT2G22420.1 48.173 301 152 3 30 330 23 319 7.35e-96 287
Msa0758150 AT5G58390.1 45.897 329 161 5 5 330 2 316 5.34e-95 285
Msa0758150 AT1G14540.1 44.136 324 166 2 7 330 7 315 1.18e-94 284
Msa0758150 AT1G68850.1 46.358 302 157 3 34 330 34 335 4.96e-94 283
Msa0758150 AT3G03670.1 43.519 324 175 3 7 330 6 321 1.51e-89 271
Msa0758150 AT5G19880.1 41.896 327 180 4 8 330 9 329 2.53e-86 263
Msa0758150 AT1G05260.1 42.857 329 183 4 5 331 1 326 4.28e-86 262
Msa0758150 AT4G11290.1 45.819 299 159 3 34 330 29 326 1.43e-85 261
Msa0758150 AT5G15180.1 46.128 297 157 3 34 330 36 329 6.07e-85 259
Msa0758150 AT5G64120.1 43.771 297 160 5 34 330 39 328 4.99e-84 257
Msa0758150 AT3G21770.1 44.737 304 159 4 27 326 26 324 4.33e-82 252
Msa0758150 AT5G17820.1 40.303 330 180 6 1 330 1 313 5.43e-81 249
Msa0758150 AT1G71695.1 42.183 339 174 9 5 330 10 339 2.05e-80 249
Msa0758150 AT5G17820.2 40.303 330 180 6 1 330 54 366 4.70e-80 248
Msa0758150 AT2G35380.2 50.602 249 114 3 89 330 1 247 1.31e-79 243
Msa0758150 AT5G42180.1 44.667 300 160 4 30 329 23 316 1.47e-79 245
Msa0758150 AT2G39040.1 44.444 315 165 6 23 330 39 350 9.20e-79 244
Msa0758150 AT3G01190.1 43.925 321 169 5 10 330 12 321 1.12e-78 243
Msa0758150 AT1G05240.1 43.434 297 159 5 34 326 30 321 1.15e-78 243
Msa0758150 AT1G05250.1 43.434 297 159 5 34 326 30 321 1.15e-78 243
Msa0758150 AT2G41480.1 44.371 302 157 5 34 330 33 328 1.65e-78 243
Msa0758150 AT5G51890.1 40.549 328 177 8 7 330 9 322 4.99e-77 239
Msa0758150 AT5G39580.1 43.960 298 159 6 34 330 29 319 1.26e-76 238
Msa0758150 AT1G30870.1 45.307 309 157 6 26 331 47 346 1.90e-76 238
Msa0758150 AT5G64100.1 44.147 299 157 5 34 330 41 331 2.35e-74 233
Msa0758150 AT4G26010.1 41.195 318 172 7 15 331 7 310 4.19e-72 226
Msa0758150 AT4G33870.1 36.607 336 176 4 29 329 67 400 8.26e-72 228
Msa0758150 AT4G26010.2 41.195 318 172 7 15 331 35 338 8.63e-72 226
Msa0758150 AT5G47000.1 37.920 327 193 5 7 331 13 331 2.21e-71 225
Msa0758150 AT5G64110.1 43.333 300 160 5 34 330 38 330 4.66e-71 224
Msa0758150 AT4G37520.1 39.474 304 180 3 30 330 27 329 1.38e-70 223
Msa0758150 AT2G37130.1 40.584 308 172 5 27 330 27 327 1.40e-70 223
Msa0758150 AT2G37130.2 40.864 301 167 5 34 330 3 296 2.49e-70 221
Msa0758150 AT4G37530.1 39.803 304 179 3 30 330 27 329 6.94e-70 221
Msa0758150 AT2G18980.1 38.739 333 191 5 1 330 1 323 1.41e-69 220
Msa0758150 AT4G33420.1 39.514 329 181 8 2 330 15 325 1.78e-69 220
Msa0758150 AT4G37520.2 39.145 304 178 4 30 330 27 326 6.19e-69 218
Msa0758150 AT5G14130.1 37.654 324 189 5 8 330 19 330 9.61e-69 218
Msa0758150 AT4G33420.2 39.514 329 181 8 2 330 62 372 1.03e-68 219
Msa0758150 AT3G28200.1 39.274 303 175 4 30 330 21 316 1.26e-68 217
Msa0758150 AT1G24110.1 39.344 305 179 5 30 331 22 323 3.48e-68 216
Msa0758150 AT4G30170.1 39.032 310 177 6 26 330 23 325 3.60e-68 216
Msa0758150 AT5G14130.2 37.654 324 189 5 8 330 60 371 3.81e-68 218
Msa0758150 AT4G31760.1 40.803 299 170 4 34 330 33 326 4.60e-68 216
Msa0758150 AT1G77100.1 40.594 303 163 8 34 330 28 319 5.02e-68 216
Msa0758150 AT2G24800.1 42.000 300 166 5 34 330 35 329 1.44e-67 215
Msa0758150 AT4G25980.1 38.411 302 176 5 34 330 30 326 1.08e-66 213
Msa0758150 AT2G34060.1 37.462 331 196 6 7 327 14 343 4.57e-66 212
Msa0758150 AT5G40150.1 37.785 307 183 4 26 330 28 328 9.15e-66 210
Msa0758150 AT1G34510.1 39.117 317 178 7 16 331 8 310 1.13e-65 209
Msa0758150 AT4G17690.1 37.954 303 180 4 30 330 26 322 2.51e-65 209
Msa0758150 AT4G21960.1 38.816 304 176 4 30 330 31 327 4.82e-65 208
Msa0758150 AT5G22410.1 37.202 336 191 11 2 331 5 326 2.19e-64 207
Msa0758150 AT5G67400.1 38.816 304 182 3 30 330 27 329 1.29e-63 205
Msa0758150 AT3G49960.1 38.000 300 182 3 34 330 31 329 2.56e-63 204
Msa0758150 AT2G43480.1 37.785 307 178 7 29 330 37 335 1.28e-59 194
Msa0758150 AT4G37530.2 40.562 249 145 2 34 279 31 279 2.52e-59 192
Msa0758150 AT3G17070.1 35.693 339 182 10 13 330 16 339 2.04e-58 192
Msa0758150 AT5G24070.1 33.923 339 204 7 5 330 4 335 2.46e-58 191
Msa0758150 AT4G25980.2 45.732 164 85 3 34 197 75 234 3.17e-44 153
Msa0758150 AT5G39580.2 46.784 171 86 3 34 204 29 194 2.53e-43 149
Msa0758150 AT3G17070.2 33.681 288 161 9 58 330 4 276 1.60e-41 146
Msa0758150 AT2G24800.2 46.626 163 83 1 34 196 35 193 9.26e-41 143
Msa0758150 AT3G42570.1 36.111 144 78 4 55 195 15 147 4.02e-15 72.0
Msa0758150 AT4G32320.1 26.599 297 143 10 29 311 86 321 1.19e-14 73.9

Find 83 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACCCCTTGATCCTGTTAA+AGG 0.173311 5_2:+13237283 None:intergenic
CTTGACAATCTCTTCAACTT+TGG 0.243603 5_2:+13238714 None:intergenic
AGTCTAGGACAAACAGATTT+TGG 0.271787 5_2:+13237497 None:intergenic
CAACTACTACAAGAACTTAT+TGG 0.285025 5_2:-13237449 Msa0758150:CDS
TAATAAGATGTTTCAAGAAT+TGG 0.295395 5_2:-13237058 Msa0758150:three_prime_UTR
CTGACTTGCCATTCCCAGTT+TGG 0.295882 5_2:+13237584 None:intergenic
ATGGTTTGGAATGTATTGTT+AGG 0.303652 5_2:+13237961 None:intergenic
GTTGATCTAGTTGCTCTATC+TGG 0.307619 5_2:-13237904 Msa0758150:intron
GGAAACATTACTCCTTTAAC+AGG 0.313337 5_2:-13237295 Msa0758150:CDS
TGTGTCCTGAGTATAAAATT+TGG 0.318039 5_2:-13237123 Msa0758150:three_prime_UTR
CTTAACTAAATTCAAGCTTA+AGG 0.333245 5_2:-13237938 Msa0758150:CDS
TGAATTTAGTTAAGATGGTT+TGG 0.336203 5_2:+13237947 None:intergenic
TTGACAATCTCTTCAACTTT+GGG 0.338379 5_2:+13238715 None:intergenic
CAAAGACTCTACAACCAAAC+TGG 0.339170 5_2:-13237598 Msa0758150:CDS
TTAACTAAATTCAAGCTTAA+GGG 0.348519 5_2:-13237937 Msa0758150:CDS
CAAATCCTCTAGCTGAATTA+CGG 0.358640 5_2:+13238260 None:intergenic
GAGTATAAAATTTGGGCTTT+TGG 0.362183 5_2:-13237115 Msa0758150:three_prime_UTR
GTGTCCTGAGTATAAAATTT+GGG 0.365686 5_2:-13237122 Msa0758150:three_prime_UTR
CGCACTCGGTGCCCAAGATC+TGG 0.377599 5_2:-13237526 Msa0758150:CDS
ACCAAGTTGGGATGTACCTT+TGG 0.377739 5_2:-13238040 Msa0758150:CDS
CCTCTAGCTGAATTACGGTT+TGG 0.384144 5_2:+13238265 None:intergenic
AAGCTTGAATTTAGTTAAGA+TGG 0.387881 5_2:+13237942 None:intergenic
GCAATTGAGCTGCATAGTTT+TGG 0.388025 5_2:+13237548 None:intergenic
ATGGGGACACTCTTTCTCTA+TGG 0.408307 5_2:+13238213 None:intergenic
TATCAGCACAAGAGACTGTA+TGG 0.408557 5_2:+13238194 None:intergenic
TTTGGTCTCCACCAGATCTT+GGG 0.428573 5_2:+13237515 None:intergenic
TCAGACTGGTGGACCAAGTT+GGG 0.428730 5_2:-13238052 Msa0758150:intron
TGCCAAGTCCATGGTTAAGA+TGG 0.429935 5_2:-13237317 Msa0758150:CDS
TGGTTTGGAATGTATTGTTA+GGG 0.440392 5_2:+13237962 None:intergenic
TCCCATCTTAACCATGGACT+TGG 0.441177 5_2:+13237315 None:intergenic
CCAAGTTGGGATGTACCTTT+GGG 0.443433 5_2:-13238039 Msa0758150:CDS
ACAGAATTTCATCAGAACTT+AGG 0.456756 5_2:+13237413 None:intergenic
CAGCAAGGAAGCAGCCATGC+GGG 0.463288 5_2:+13238660 None:intergenic
GTAGAGTCTTTGTCTAAAGC+TGG 0.469738 5_2:+13237609 None:intergenic
TTACTCCTTTAACAGGATCA+AGG 0.477963 5_2:-13237288 Msa0758150:CDS
TGGAATGTATTGTTAGGGGC+AGG 0.478296 5_2:+13237967 None:intergenic
GGGACACTCTTTCTCTATGG+TGG 0.490238 5_2:+13238216 None:intergenic
ATGCAGCTCAATTGCGCACT+CGG 0.490653 5_2:-13237540 Msa0758150:CDS
CCCAAAGGTACATCCCAACT+TGG 0.492802 5_2:+13238039 None:intergenic
TCTCTTGGTGCAAGCATAAG+TGG 0.493124 5_2:-13238006 Msa0758150:CDS
CAAGAACTTATTGGCCAACA+AGG 0.495886 5_2:-13237440 Msa0758150:CDS
CACGAATCATCGTAAAATTG+AGG 0.496099 5_2:+13238739 None:intergenic
CTCTACAACCAAACTGGGAA+TGG 0.498579 5_2:-13237592 Msa0758150:CDS
TTGGGAAGAAGAGATTCTCT+TGG 0.501308 5_2:-13238021 Msa0758150:CDS
AGAACTTAGGAGACCCTTGT+TGG 0.510984 5_2:+13237426 None:intergenic
TACTCCTTTAACAGGATCAA+GGG 0.516424 5_2:-13237287 Msa0758150:CDS
GGTGCACCGCGAATCTCCTA+TGG 0.523145 5_2:+13237630 None:intergenic
ATTCAATCCTTTCAGACTGG+TGG 0.533760 5_2:-13238063 Msa0758150:intron
AGCGACAGCCTTAGCAACTA+CGG 0.534152 5_2:+13238690 None:intergenic
TTCAGACTGGTGGACCAAGT+TGG 0.534896 5_2:-13238053 Msa0758150:intron
GCCAAGTCCATGGTTAAGAT+GGG 0.535394 5_2:-13237316 Msa0758150:CDS
TCAACAATTTGCCAAGTCCA+TGG 0.538478 5_2:-13237326 Msa0758150:CDS
TGTCAAGTCCGTAGTTGCTA+AGG 0.541793 5_2:-13238698 Msa0758150:CDS
CATCGTAAAATTGAGGGTAG+AGG 0.558315 5_2:+13238746 None:intergenic
ACGAATCATCGTAAAATTGA+GGG 0.561360 5_2:+13238740 None:intergenic
TTACCGGTGTGACAAAGTCT+AGG 0.570159 5_2:+13237482 None:intergenic
CCAAACCGTAATTCAGCTAG+AGG 0.570737 5_2:-13238265 Msa0758150:CDS
TTTGCAGGGTTGTGATGCAT+CGG 0.577809 5_2:-13238335 Msa0758150:intron
GAACAATCATCAGCGAAAAG+AGG 0.590852 5_2:-13238294 Msa0758150:CDS
AATGTTTCCCATCTTAACCA+TGG 0.593838 5_2:+13237309 None:intergenic
AGCAAGGAAGCAGCCATGCG+GGG 0.595766 5_2:+13238661 None:intergenic
ATACCTTGACAAAACAGTCA+TGG 0.599142 5_2:+13238626 None:intergenic
AATCAGAAAACGCTGCAGAA+AGG 0.603094 5_2:-13237260 Msa0758150:CDS
GTTATAGGTAGCCACACCAT+AGG 0.605653 5_2:-13237646 Msa0758150:intron
GCCACACCATAGGAGATTCG+CGG 0.611411 5_2:-13237636 Msa0758150:CDS
ATCAGCACAAGAGACTGTAT+GGG 0.616020 5_2:+13238195 None:intergenic
TGTCGCTAAAGAACCCCGCA+TGG 0.629260 5_2:-13238674 Msa0758150:CDS
ACCGCGAATCTCCTATGGTG+TGG 0.629403 5_2:+13237635 None:intergenic
AAAGACTCTACAACCAAACT+GGG 0.636762 5_2:-13237597 Msa0758150:CDS
ACTCGGTGCCCAAGATCTGG+TGG 0.639184 5_2:-13237523 Msa0758150:CDS
AGAGAATCTCTTCTTCCCAA+AGG 0.641536 5_2:+13238024 None:intergenic
TGTCCTAGACTTTGTCACAC+CGG 0.643380 5_2:-13237485 Msa0758150:CDS
GGACACAGCGACTATGCCAA+TGG 0.644492 5_2:+13237139 None:intergenic
ACTCCTTTAACAGGATCAAG+GGG 0.648428 5_2:-13237286 Msa0758150:CDS
ATGGAAATGTAGTCTCAGCA+AGG 0.653675 5_2:+13238645 None:intergenic
TCAGCAAGGAAGCAGCCATG+CGG 0.656575 5_2:+13238659 None:intergenic
AAATACTATCATTTCCACCA+TGG 0.660518 5_2:-13238914 Msa0758150:five_prime_UTR
GGTTTGGAATGTATTGTTAG+GGG 0.668824 5_2:+13237963 None:intergenic
AAGAACTTATTGGCCAACAA+GGG 0.679001 5_2:-13237439 Msa0758150:CDS
TCGGTGTTGCTAGATAGCAG+TGG 0.688736 5_2:-13238316 Msa0758150:CDS
TCAGCACAAGAGACTGTATG+GGG 0.717540 5_2:+13238196 None:intergenic
GGATTGGATGAATACCATGG+TGG 0.761315 5_2:+13238900 None:intergenic
ACTGGATTGGATGAATACCA+TGG 0.762767 5_2:+13238897 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAACAATGTTTAAAAATG+TGG - chr5_2:13237367-13237386 Msa0758150:CDS 20.0%
!!! TGTTATTTTTTAAAACCTTG+TGG - chr5_2:13237474-13237493 Msa0758150:CDS 20.0%
!!! ACTTGATATTTAACTTTTGA+TGG + chr5_2:13237872-13237891 None:intergenic 20.0%
!! TTAACTAAATTCAAGCTTAA+GGG - chr5_2:13238023-13238042 Msa0758150:CDS 20.0%
!! GAAGAAAATTGAGATAAATT+TGG + chr5_2:13238237-13238256 None:intergenic 20.0%
!!! AATTTTCTTCATTTGAGTTT+TGG - chr5_2:13238247-13238266 Msa0758150:CDS 20.0%
!! ACAAATTCTTGTAATGTTAT+AGG - chr5_2:13238299-13238318 Msa0758150:CDS 20.0%
!! TAATAAGATGTTTCAAGAAT+TGG - chr5_2:13238902-13238921 Msa0758150:five_prime_UTR 20.0%
!! GTAAACAATGTTTAAAAATG+TGG - chr5_2:13237367-13237386 Msa0758150:CDS 20.0%
!!! TGTTATTTTTTAAAACCTTG+TGG - chr5_2:13237474-13237493 Msa0758150:CDS 20.0%
!!! ACTTGATATTTAACTTTTGA+TGG + chr5_2:13237872-13237891 None:intergenic 20.0%
!! TTAACTAAATTCAAGCTTAA+GGG - chr5_2:13238023-13238042 Msa0758150:CDS 20.0%
!! GAAGAAAATTGAGATAAATT+TGG + chr5_2:13238237-13238256 None:intergenic 20.0%
!!! AATTTTCTTCATTTGAGTTT+TGG - chr5_2:13238247-13238266 Msa0758150:CDS 20.0%
!! ACAAATTCTTGTAATGTTAT+AGG - chr5_2:13238299-13238318 Msa0758150:CDS 20.0%
!! TAATAAGATGTTTCAAGAAT+TGG - chr5_2:13238902-13238921 Msa0758150:five_prime_UTR 20.0%
! TGATCTTGAAAGAAAAACAA+TGG - chr5_2:13237109-13237128 Msa0758150:three_prime_UTR 25.0%
! AATGTTTAAAAATGTGGTCA+TGG - chr5_2:13237373-13237392 Msa0758150:CDS 25.0%
! TGATCTATGAGTTGTATATT+GGG - chr5_2:13237537-13237556 Msa0758150:CDS 25.0%
! TGAATTTAGTTAAGATGGTT+TGG + chr5_2:13238016-13238035 None:intergenic 25.0%
! AAGCTTGAATTTAGTTAAGA+TGG + chr5_2:13238021-13238040 None:intergenic 25.0%
! CTTAACTAAATTCAAGCTTA+AGG - chr5_2:13238022-13238041 Msa0758150:CDS 25.0%
! AGATGAAATAGATTAGTACT+AGG + chr5_2:13238088-13238107 None:intergenic 25.0%
! TGATCTTGAAAGAAAAACAA+TGG - chr5_2:13237109-13237128 Msa0758150:three_prime_UTR 25.0%
! AATGTTTAAAAATGTGGTCA+TGG - chr5_2:13237373-13237392 Msa0758150:CDS 25.0%
! TGATCTATGAGTTGTATATT+GGG - chr5_2:13237537-13237556 Msa0758150:CDS 25.0%
! TGAATTTAGTTAAGATGGTT+TGG + chr5_2:13238016-13238035 None:intergenic 25.0%
! AAGCTTGAATTTAGTTAAGA+TGG + chr5_2:13238021-13238040 None:intergenic 25.0%
! CTTAACTAAATTCAAGCTTA+AGG - chr5_2:13238022-13238041 Msa0758150:CDS 25.0%
! AGATGAAATAGATTAGTACT+AGG + chr5_2:13238088-13238107 None:intergenic 25.0%
AAATACTATCATTTCCACCA+TGG - chr5_2:13237046-13237065 Msa0758150:three_prime_UTR 30.0%
! CAAAATGTTTTCAACTGGAT+TGG + chr5_2:13237079-13237098 None:intergenic 30.0%
! CAGAACAAAATGTTTTCAAC+TGG + chr5_2:13237084-13237103 None:intergenic 30.0%
! TTCTTTTTACAGTGACAGAA+GGG + chr5_2:13237182-13237201 None:intergenic 30.0%
! TTTCTTTTTACAGTGACAGA+AGG + chr5_2:13237183-13237202 None:intergenic 30.0%
CACTGTAAAAAGAAAGTTGA+TGG - chr5_2:13237188-13237207 Msa0758150:three_prime_UTR 30.0%
ACGAATCATCGTAAAATTGA+GGG + chr5_2:13237223-13237242 None:intergenic 30.0%
TTGACAATCTCTTCAACTTT+GGG + chr5_2:13237248-13237267 None:intergenic 30.0%
! TTTTATATATAACCGCGATG+TGG - chr5_2:13237404-13237423 Msa0758150:CDS 30.0%
CATAAAAAACCTTAACGATG+TGG - chr5_2:13237434-13237453 Msa0758150:CDS 30.0%
! ATTTTCTATTTGCATCCACA+AGG + chr5_2:13237492-13237511 None:intergenic 30.0%
GTGATCTATGAGTTGTATAT+TGG - chr5_2:13237536-13237555 Msa0758150:CDS 30.0%
!! ATGACAAAAGTTGATTTTGC+AGG - chr5_2:13237610-13237629 Msa0758150:CDS 30.0%
!! TGACAAAAGTTGATTTTGCA+GGG - chr5_2:13237611-13237630 Msa0758150:CDS 30.0%
!! CTTTTGATGGTCATTGATAA+GGG + chr5_2:13237859-13237878 None:intergenic 30.0%
!! ACTTTTGATGGTCATTGATA+AGG + chr5_2:13237860-13237879 None:intergenic 30.0%
AATATTCAATCCTTTCAGAC+TGG - chr5_2:13237894-13237913 Msa0758150:intron 30.0%
! TGGTTTGGAATGTATTGTTA+GGG + chr5_2:13238001-13238020 None:intergenic 30.0%
! ATGGTTTGGAATGTATTGTT+AGG + chr5_2:13238002-13238021 None:intergenic 30.0%
CAAGTATGTGTTGAAAACAA+TGG + chr5_2:13238111-13238130 None:intergenic 30.0%
! CATTGTTTTCAACACATACT+TGG - chr5_2:13238109-13238128 Msa0758150:intron 30.0%
! TAGTTGTTGTCGAATTTTAC+CGG + chr5_2:13238497-13238516 None:intergenic 30.0%
CAACTACTACAAGAACTTAT+TGG - chr5_2:13238511-13238530 Msa0758150:intron 30.0%
ACAGAATTTCATCAGAACTT+AGG + chr5_2:13238550-13238569 None:intergenic 30.0%
CCAATGGCTTCATAAAAAAA+TGG + chr5_2:13238808-13238827 None:intergenic 30.0%
!!! CCATTTTTTTATGAAGCCAT+TGG - chr5_2:13238805-13238824 Msa0758150:CDS 30.0%
TGTGTCCTGAGTATAAAATT+TGG - chr5_2:13238837-13238856 Msa0758150:exon 30.0%
GTGTCCTGAGTATAAAATTT+GGG - chr5_2:13238838-13238857 Msa0758150:exon 30.0%
! AAAGCCCAAATTTTATACTC+AGG + chr5_2:13238845-13238864 None:intergenic 30.0%
! GAGTATAAAATTTGGGCTTT+TGG - chr5_2:13238845-13238864 Msa0758150:exon 30.0%
AAATACTATCATTTCCACCA+TGG - chr5_2:13237046-13237065 Msa0758150:three_prime_UTR 30.0%
! CAAAATGTTTTCAACTGGAT+TGG + chr5_2:13237079-13237098 None:intergenic 30.0%
! CAGAACAAAATGTTTTCAAC+TGG + chr5_2:13237084-13237103 None:intergenic 30.0%
! TTCTTTTTACAGTGACAGAA+GGG + chr5_2:13237182-13237201 None:intergenic 30.0%
! TTTCTTTTTACAGTGACAGA+AGG + chr5_2:13237183-13237202 None:intergenic 30.0%
CACTGTAAAAAGAAAGTTGA+TGG - chr5_2:13237188-13237207 Msa0758150:three_prime_UTR 30.0%
ACGAATCATCGTAAAATTGA+GGG + chr5_2:13237223-13237242 None:intergenic 30.0%
TTGACAATCTCTTCAACTTT+GGG + chr5_2:13237248-13237267 None:intergenic 30.0%
! TTTTATATATAACCGCGATG+TGG - chr5_2:13237404-13237423 Msa0758150:CDS 30.0%
CATAAAAAACCTTAACGATG+TGG - chr5_2:13237434-13237453 Msa0758150:CDS 30.0%
! ATTTTCTATTTGCATCCACA+AGG + chr5_2:13237492-13237511 None:intergenic 30.0%
GTGATCTATGAGTTGTATAT+TGG - chr5_2:13237536-13237555 Msa0758150:CDS 30.0%
!! ATGACAAAAGTTGATTTTGC+AGG - chr5_2:13237610-13237629 Msa0758150:CDS 30.0%
!! TGACAAAAGTTGATTTTGCA+GGG - chr5_2:13237611-13237630 Msa0758150:CDS 30.0%
!! CTTTTGATGGTCATTGATAA+GGG + chr5_2:13237859-13237878 None:intergenic 30.0%
!! ACTTTTGATGGTCATTGATA+AGG + chr5_2:13237860-13237879 None:intergenic 30.0%
AATATTCAATCCTTTCAGAC+TGG - chr5_2:13237894-13237913 Msa0758150:intron 30.0%
! TGGTTTGGAATGTATTGTTA+GGG + chr5_2:13238001-13238020 None:intergenic 30.0%
! ATGGTTTGGAATGTATTGTT+AGG + chr5_2:13238002-13238021 None:intergenic 30.0%
CAAGTATGTGTTGAAAACAA+TGG + chr5_2:13238111-13238130 None:intergenic 30.0%
! CATTGTTTTCAACACATACT+TGG - chr5_2:13238109-13238128 Msa0758150:intron 30.0%
! TAGTTGTTGTCGAATTTTAC+CGG + chr5_2:13238497-13238516 None:intergenic 30.0%
CAACTACTACAAGAACTTAT+TGG - chr5_2:13238511-13238530 Msa0758150:intron 30.0%
ACAGAATTTCATCAGAACTT+AGG + chr5_2:13238550-13238569 None:intergenic 30.0%
CCAATGGCTTCATAAAAAAA+TGG + chr5_2:13238808-13238827 None:intergenic 30.0%
!!! CCATTTTTTTATGAAGCCAT+TGG - chr5_2:13238805-13238824 Msa0758150:CDS 30.0%
TGTGTCCTGAGTATAAAATT+TGG - chr5_2:13238837-13238856 Msa0758150:exon 30.0%
GTGTCCTGAGTATAAAATTT+GGG - chr5_2:13238838-13238857 Msa0758150:exon 30.0%
! AAAGCCCAAATTTTATACTC+AGG + chr5_2:13238845-13238864 None:intergenic 30.0%
! GAGTATAAAATTTGGGCTTT+TGG - chr5_2:13238845-13238864 Msa0758150:exon 30.0%
AGACTAGAAGAGAAAAAAGC+AGG + chr5_2:13237154-13237173 None:intergenic 35.0%
CACGAATCATCGTAAAATTG+AGG + chr5_2:13237224-13237243 None:intergenic 35.0%
CTTGACAATCTCTTCAACTT+TGG + chr5_2:13237249-13237268 None:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG - chr5_2:13237331-13237350 Msa0758150:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG + chr5_2:13237337-13237356 None:intergenic 35.0%
ATAACAAGTGACTGCAATTG+TGG + chr5_2:13237460-13237479 None:intergenic 35.0%
ATGAGTTGTATATTGGGTGT+TGG - chr5_2:13237543-13237562 Msa0758150:CDS 35.0%
CAAATCCTCTAGCTGAATTA+CGG + chr5_2:13237703-13237722 None:intergenic 35.0%
GCAATAGAGTAGAAAACAAG+AGG + chr5_2:13237837-13237856 None:intergenic 35.0%
! GGTTTGGAATGTATTGTTAG+GGG + chr5_2:13238000-13238019 None:intergenic 35.0%
AAAGACTCTACAACCAAACT+GGG - chr5_2:13238363-13238382 Msa0758150:intron 35.0%
!! AGTCTAGGACAAACAGATTT+TGG + chr5_2:13238466-13238485 None:intergenic 35.0%
AAGAACTTATTGGCCAACAA+GGG - chr5_2:13238521-13238540 Msa0758150:intron 35.0%
AATGTTTCCCATCTTAACCA+TGG + chr5_2:13238654-13238673 None:intergenic 35.0%
GGAAACATTACTCCTTTAAC+AGG - chr5_2:13238665-13238684 Msa0758150:CDS 35.0%
TTACTCCTTTAACAGGATCA+AGG - chr5_2:13238672-13238691 Msa0758150:CDS 35.0%
TACTCCTTTAACAGGATCAA+GGG - chr5_2:13238673-13238692 Msa0758150:CDS 35.0%
AGACTAGAAGAGAAAAAAGC+AGG + chr5_2:13237154-13237173 None:intergenic 35.0%
CACGAATCATCGTAAAATTG+AGG + chr5_2:13237224-13237243 None:intergenic 35.0%
CTTGACAATCTCTTCAACTT+TGG + chr5_2:13237249-13237268 None:intergenic 35.0%
! TTTCCATGACTGTTTTGTCA+AGG - chr5_2:13237331-13237350 Msa0758150:CDS 35.0%
ATACCTTGACAAAACAGTCA+TGG + chr5_2:13237337-13237356 None:intergenic 35.0%
ATAACAAGTGACTGCAATTG+TGG + chr5_2:13237460-13237479 None:intergenic 35.0%
ATGAGTTGTATATTGGGTGT+TGG - chr5_2:13237543-13237562 Msa0758150:CDS 35.0%
CAAATCCTCTAGCTGAATTA+CGG + chr5_2:13237703-13237722 None:intergenic 35.0%
GCAATAGAGTAGAAAACAAG+AGG + chr5_2:13237837-13237856 None:intergenic 35.0%
! GGTTTGGAATGTATTGTTAG+GGG + chr5_2:13238000-13238019 None:intergenic 35.0%
AAAGACTCTACAACCAAACT+GGG - chr5_2:13238363-13238382 Msa0758150:intron 35.0%
!! AGTCTAGGACAAACAGATTT+TGG + chr5_2:13238466-13238485 None:intergenic 35.0%
AAGAACTTATTGGCCAACAA+GGG - chr5_2:13238521-13238540 Msa0758150:intron 35.0%
AATGTTTCCCATCTTAACCA+TGG + chr5_2:13238654-13238673 None:intergenic 35.0%
GGAAACATTACTCCTTTAAC+AGG - chr5_2:13238665-13238684 Msa0758150:CDS 35.0%
TTACTCCTTTAACAGGATCA+AGG - chr5_2:13238672-13238691 Msa0758150:CDS 35.0%
TACTCCTTTAACAGGATCAA+GGG - chr5_2:13238673-13238692 Msa0758150:CDS 35.0%
! ACTGGATTGGATGAATACCA+TGG + chr5_2:13237066-13237085 None:intergenic 40.0%
CATCGTAAAATTGAGGGTAG+AGG + chr5_2:13237217-13237236 None:intergenic 40.0%
ATGGAAATGTAGTCTCAGCA+AGG + chr5_2:13237318-13237337 None:intergenic 40.0%
GAACAATCATCAGCGAAAAG+AGG - chr5_2:13237666-13237685 Msa0758150:intron 40.0%
ATCAGCACAAGAGACTGTAT+GGG + chr5_2:13237768-13237787 None:intergenic 40.0%
TATCAGCACAAGAGACTGTA+TGG + chr5_2:13237769-13237788 None:intergenic 40.0%
ATTCAATCCTTTCAGACTGG+TGG - chr5_2:13237897-13237916 Msa0758150:intron 40.0%
AGAGAATCTCTTCTTCCCAA+AGG + chr5_2:13237939-13237958 None:intergenic 40.0%
TTGGGAAGAAGAGATTCTCT+TGG - chr5_2:13237939-13237958 Msa0758150:CDS 40.0%
GTTGATCTAGTTGCTCTATC+TGG - chr5_2:13238056-13238075 Msa0758150:intron 40.0%
CTGCAACACAATCTATATCG+CGG + chr5_2:13238177-13238196 None:intergenic 40.0%
TTATGCCACTGATGCAACTA+CGG + chr5_2:13238279-13238298 None:intergenic 40.0%
! GTAGAGTCTTTGTCTAAAGC+TGG + chr5_2:13238354-13238373 None:intergenic 40.0%
CAAAGACTCTACAACCAAAC+TGG - chr5_2:13238362-13238381 Msa0758150:intron 40.0%
! GCAATTGAGCTGCATAGTTT+TGG + chr5_2:13238415-13238434 None:intergenic 40.0%
CAAGAACTTATTGGCCAACA+AGG - chr5_2:13238520-13238539 Msa0758150:intron 40.0%
TCAACAATTTGCCAAGTCCA+TGG - chr5_2:13238634-13238653 Msa0758150:CDS 40.0%
ACTCCTTTAACAGGATCAAG+GGG - chr5_2:13238674-13238693 Msa0758150:CDS 40.0%
AATCAGAAAACGCTGCAGAA+AGG - chr5_2:13238700-13238719 Msa0758150:CDS 40.0%
! ACTGGATTGGATGAATACCA+TGG + chr5_2:13237066-13237085 None:intergenic 40.0%
CATCGTAAAATTGAGGGTAG+AGG + chr5_2:13237217-13237236 None:intergenic 40.0%
ATGGAAATGTAGTCTCAGCA+AGG + chr5_2:13237318-13237337 None:intergenic 40.0%
GAACAATCATCAGCGAAAAG+AGG - chr5_2:13237666-13237685 Msa0758150:intron 40.0%
ATCAGCACAAGAGACTGTAT+GGG + chr5_2:13237768-13237787 None:intergenic 40.0%
TATCAGCACAAGAGACTGTA+TGG + chr5_2:13237769-13237788 None:intergenic 40.0%
ATTCAATCCTTTCAGACTGG+TGG - chr5_2:13237897-13237916 Msa0758150:intron 40.0%
AGAGAATCTCTTCTTCCCAA+AGG + chr5_2:13237939-13237958 None:intergenic 40.0%
TTGGGAAGAAGAGATTCTCT+TGG - chr5_2:13237939-13237958 Msa0758150:CDS 40.0%
GTTGATCTAGTTGCTCTATC+TGG - chr5_2:13238056-13238075 Msa0758150:intron 40.0%
CTGCAACACAATCTATATCG+CGG + chr5_2:13238177-13238196 None:intergenic 40.0%
TTATGCCACTGATGCAACTA+CGG + chr5_2:13238279-13238298 None:intergenic 40.0%
! GTAGAGTCTTTGTCTAAAGC+TGG + chr5_2:13238354-13238373 None:intergenic 40.0%
CAAAGACTCTACAACCAAAC+TGG - chr5_2:13238362-13238381 Msa0758150:intron 40.0%
! GCAATTGAGCTGCATAGTTT+TGG + chr5_2:13238415-13238434 None:intergenic 40.0%
CAAGAACTTATTGGCCAACA+AGG - chr5_2:13238520-13238539 Msa0758150:intron 40.0%
TCAACAATTTGCCAAGTCCA+TGG - chr5_2:13238634-13238653 Msa0758150:CDS 40.0%
ACTCCTTTAACAGGATCAAG+GGG - chr5_2:13238674-13238693 Msa0758150:CDS 40.0%
AATCAGAAAACGCTGCAGAA+AGG - chr5_2:13238700-13238719 Msa0758150:CDS 40.0%
GGATTGGATGAATACCATGG+TGG + chr5_2:13237063-13237082 None:intergenic 45.0%
TGTCAAGTCCGTAGTTGCTA+AGG - chr5_2:13237262-13237281 Msa0758150:CDS 45.0%
TTATGTGTCTGACCACATCG+CGG + chr5_2:13237419-13237438 None:intergenic 45.0%
CAATTGTGGCCACATCGTTA+AGG + chr5_2:13237446-13237465 None:intergenic 45.0%
TTTGCAGGGTTGTGATGCAT+CGG - chr5_2:13237625-13237644 Msa0758150:CDS 45.0%
CCTCTAGCTGAATTACGGTT+TGG + chr5_2:13237698-13237717 None:intergenic 45.0%
CCAAACCGTAATTCAGCTAG+AGG - chr5_2:13237695-13237714 Msa0758150:intron 45.0%
ATGGGGACACTCTTTCTCTA+TGG + chr5_2:13237750-13237769 None:intergenic 45.0%
TCAGCACAAGAGACTGTATG+GGG + chr5_2:13237767-13237786 None:intergenic 45.0%
! ACCAAGTTGGGATGTACCTT+TGG - chr5_2:13237920-13237939 Msa0758150:CDS 45.0%
! CCAAGTTGGGATGTACCTTT+GGG - chr5_2:13237921-13237940 Msa0758150:CDS 45.0%
! TCTCTTGGTGCAAGCATAAG+TGG - chr5_2:13237954-13237973 Msa0758150:CDS 45.0%
TGGAATGTATTGTTAGGGGC+AGG + chr5_2:13237996-13238015 None:intergenic 45.0%
TTCTTCCGTAGTTGCATCAG+TGG - chr5_2:13238271-13238290 Msa0758150:CDS 45.0%
GTTATAGGTAGCCACACCAT+AGG - chr5_2:13238314-13238333 Msa0758150:CDS 45.0%
CTCTACAACCAAACTGGGAA+TGG - chr5_2:13238368-13238387 Msa0758150:intron 45.0%
TTTGGTCTCCACCAGATCTT+GGG + chr5_2:13238448-13238467 None:intergenic 45.0%
! TTTTGGTCTCCACCAGATCT+TGG + chr5_2:13238449-13238468 None:intergenic 45.0%
TGTCCTAGACTTTGTCACAC+CGG - chr5_2:13238475-13238494 Msa0758150:intron 45.0%
TTACCGGTGTGACAAAGTCT+AGG + chr5_2:13238481-13238500 None:intergenic 45.0%
AGAACTTAGGAGACCCTTGT+TGG + chr5_2:13238537-13238556 None:intergenic 45.0%
TGCCAAGTCCATGGTTAAGA+TGG - chr5_2:13238643-13238662 Msa0758150:CDS 45.0%
GCCAAGTCCATGGTTAAGAT+GGG - chr5_2:13238644-13238663 Msa0758150:CDS 45.0%
TCCCATCTTAACCATGGACT+TGG + chr5_2:13238648-13238667 None:intergenic 45.0%
TCACCCCTTGATCCTGTTAA+AGG + chr5_2:13238680-13238699 None:intergenic 45.0%
GGATTGGATGAATACCATGG+TGG + chr5_2:13237063-13237082 None:intergenic 45.0%
TGTCAAGTCCGTAGTTGCTA+AGG - chr5_2:13237262-13237281 Msa0758150:CDS 45.0%
TTATGTGTCTGACCACATCG+CGG + chr5_2:13237419-13237438 None:intergenic 45.0%
CAATTGTGGCCACATCGTTA+AGG + chr5_2:13237446-13237465 None:intergenic 45.0%
TTTGCAGGGTTGTGATGCAT+CGG - chr5_2:13237625-13237644 Msa0758150:CDS 45.0%
CCTCTAGCTGAATTACGGTT+TGG + chr5_2:13237698-13237717 None:intergenic 45.0%
CCAAACCGTAATTCAGCTAG+AGG - chr5_2:13237695-13237714 Msa0758150:intron 45.0%
ATGGGGACACTCTTTCTCTA+TGG + chr5_2:13237750-13237769 None:intergenic 45.0%
TCAGCACAAGAGACTGTATG+GGG + chr5_2:13237767-13237786 None:intergenic 45.0%
! ACCAAGTTGGGATGTACCTT+TGG - chr5_2:13237920-13237939 Msa0758150:CDS 45.0%
! CCAAGTTGGGATGTACCTTT+GGG - chr5_2:13237921-13237940 Msa0758150:CDS 45.0%
! TCTCTTGGTGCAAGCATAAG+TGG - chr5_2:13237954-13237973 Msa0758150:CDS 45.0%
TGGAATGTATTGTTAGGGGC+AGG + chr5_2:13237996-13238015 None:intergenic 45.0%
TTCTTCCGTAGTTGCATCAG+TGG - chr5_2:13238271-13238290 Msa0758150:CDS 45.0%
GTTATAGGTAGCCACACCAT+AGG - chr5_2:13238314-13238333 Msa0758150:CDS 45.0%
CTCTACAACCAAACTGGGAA+TGG - chr5_2:13238368-13238387 Msa0758150:intron 45.0%
TTTGGTCTCCACCAGATCTT+GGG + chr5_2:13238448-13238467 None:intergenic 45.0%
! TTTTGGTCTCCACCAGATCT+TGG + chr5_2:13238449-13238468 None:intergenic 45.0%
TGTCCTAGACTTTGTCACAC+CGG - chr5_2:13238475-13238494 Msa0758150:intron 45.0%
TTACCGGTGTGACAAAGTCT+AGG + chr5_2:13238481-13238500 None:intergenic 45.0%
AGAACTTAGGAGACCCTTGT+TGG + chr5_2:13238537-13238556 None:intergenic 45.0%
TGCCAAGTCCATGGTTAAGA+TGG - chr5_2:13238643-13238662 Msa0758150:CDS 45.0%
GCCAAGTCCATGGTTAAGAT+GGG - chr5_2:13238644-13238663 Msa0758150:CDS 45.0%
TCCCATCTTAACCATGGACT+TGG + chr5_2:13238648-13238667 None:intergenic 45.0%
TCACCCCTTGATCCTGTTAA+AGG + chr5_2:13238680-13238699 None:intergenic 45.0%
AGCGACAGCCTTAGCAACTA+CGG + chr5_2:13237273-13237292 None:intergenic 50.0%
!! TCGGTGTTGCTAGATAGCAG+TGG - chr5_2:13237644-13237663 Msa0758150:intron 50.0%
GGGACACTCTTTCTCTATGG+TGG + chr5_2:13237747-13237766 None:intergenic 50.0%
ACTTGGTCCACCAGTCTGAA+AGG + chr5_2:13237907-13237926 None:intergenic 50.0%
! TTCAGACTGGTGGACCAAGT+TGG - chr5_2:13237907-13237926 Msa0758150:CDS 50.0%
! TCAGACTGGTGGACCAAGTT+GGG - chr5_2:13237908-13237927 Msa0758150:CDS 50.0%
! CCCAAAGGTACATCCCAACT+TGG + chr5_2:13237924-13237943 None:intergenic 50.0%
! CTGACTTGCCATTCCCAGTT+TGG + chr5_2:13238379-13238398 None:intergenic 50.0%
ATGCAGCTCAATTGCGCACT+CGG - chr5_2:13238420-13238439 Msa0758150:intron 50.0%
AGCGACAGCCTTAGCAACTA+CGG + chr5_2:13237273-13237292 None:intergenic 50.0%
!! TCGGTGTTGCTAGATAGCAG+TGG - chr5_2:13237644-13237663 Msa0758150:intron 50.0%
GGGACACTCTTTCTCTATGG+TGG + chr5_2:13237747-13237766 None:intergenic 50.0%
ACTTGGTCCACCAGTCTGAA+AGG + chr5_2:13237907-13237926 None:intergenic 50.0%
! TTCAGACTGGTGGACCAAGT+TGG - chr5_2:13237907-13237926 Msa0758150:CDS 50.0%
! TCAGACTGGTGGACCAAGTT+GGG - chr5_2:13237908-13237927 Msa0758150:CDS 50.0%
! CCCAAAGGTACATCCCAACT+TGG + chr5_2:13237924-13237943 None:intergenic 50.0%
! CTGACTTGCCATTCCCAGTT+TGG + chr5_2:13238379-13238398 None:intergenic 50.0%
ATGCAGCTCAATTGCGCACT+CGG - chr5_2:13238420-13238439 Msa0758150:intron 50.0%
TGTCGCTAAAGAACCCCGCA+TGG - chr5_2:13237286-13237305 Msa0758150:CDS 55.0%
TCAGCAAGGAAGCAGCCATG+CGG + chr5_2:13237304-13237323 None:intergenic 55.0%
GCCACACCATAGGAGATTCG+CGG - chr5_2:13238324-13238343 Msa0758150:CDS 55.0%
ACCGCGAATCTCCTATGGTG+TGG + chr5_2:13238328-13238347 None:intergenic 55.0%
GGACACAGCGACTATGCCAA+TGG + chr5_2:13238824-13238843 None:intergenic 55.0%
TGTCGCTAAAGAACCCCGCA+TGG - chr5_2:13237286-13237305 Msa0758150:CDS 55.0%
TCAGCAAGGAAGCAGCCATG+CGG + chr5_2:13237304-13237323 None:intergenic 55.0%
GCCACACCATAGGAGATTCG+CGG - chr5_2:13238324-13238343 Msa0758150:CDS 55.0%
ACCGCGAATCTCCTATGGTG+TGG + chr5_2:13238328-13238347 None:intergenic 55.0%
GGACACAGCGACTATGCCAA+TGG + chr5_2:13238824-13238843 None:intergenic 55.0%
AGCAAGGAAGCAGCCATGCG+GGG + chr5_2:13237302-13237321 None:intergenic 60.0%
CAGCAAGGAAGCAGCCATGC+GGG + chr5_2:13237303-13237322 None:intergenic 60.0%
GGTGCACCGCGAATCTCCTA+TGG + chr5_2:13238333-13238352 None:intergenic 60.0%
!! ACTCGGTGCCCAAGATCTGG+TGG - chr5_2:13238437-13238456 Msa0758150:intron 60.0%
AGCAAGGAAGCAGCCATGCG+GGG + chr5_2:13237302-13237321 None:intergenic 60.0%
CAGCAAGGAAGCAGCCATGC+GGG + chr5_2:13237303-13237322 None:intergenic 60.0%
GGTGCACCGCGAATCTCCTA+TGG + chr5_2:13238333-13238352 None:intergenic 60.0%
!! ACTCGGTGCCCAAGATCTGG+TGG - chr5_2:13238437-13238456 Msa0758150:intron 60.0%
!! CGCACTCGGTGCCCAAGATC+TGG - chr5_2:13238434-13238453 Msa0758150:intron 65.0%
!! CGCACTCGGTGCCCAAGATC+TGG - chr5_2:13238434-13238453 Msa0758150:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 13237013 13238969 13237013 ID=Msa0758150;Name=Msa0758150
chr5_2 mRNA 13237013 13238969 13237013 ID=Msa0758150-mRNA-1;Parent=Msa0758150;Name=Msa0758150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=115|1|1|1|1|1|4|236|331
chr5_2 exon 13237013 13237661 13237013 ID=Msa0758150-mRNA-1:exon:5951;Parent=Msa0758150-mRNA-1
chr5_2 exon 13237905 13238070 13237905 ID=Msa0758150-mRNA-1:exon:5950;Parent=Msa0758150-mRNA-1
chr5_2 exon 13238159 13238350 13238159 ID=Msa0758150-mRNA-1:exon:5949;Parent=Msa0758150-mRNA-1
chr5_2 exon 13238630 13238969 13238630 ID=Msa0758150-mRNA-1:exon:5948;Parent=Msa0758150-mRNA-1
chr5_2 five_prime_UTR 13238855 13238969 13238855 ID=Msa0758150-mRNA-1:five_prime_utr;Parent=Msa0758150-mRNA-1
chr5_2 CDS 13238630 13238854 13238630 ID=Msa0758150-mRNA-1:cds;Parent=Msa0758150-mRNA-1
chr5_2 CDS 13238159 13238350 13238159 ID=Msa0758150-mRNA-1:cds;Parent=Msa0758150-mRNA-1
chr5_2 CDS 13237905 13238070 13237905 ID=Msa0758150-mRNA-1:cds;Parent=Msa0758150-mRNA-1
chr5_2 CDS 13237249 13237661 13237249 ID=Msa0758150-mRNA-1:cds;Parent=Msa0758150-mRNA-1
chr5_2 three_prime_UTR 13237013 13237248 13237013 ID=Msa0758150-mRNA-1:three_prime_utr;Parent=Msa0758150-mRNA-1
Gene Sequence

>Msa0758150

ATGGTCAATTCTATAAACTTTCTCCTGCTTTTTTCTCTTCTAGTCTTTGCTCCCTTCTGTCACTGTAAAAAGAAAGTTGATGGTTACCTCTACCCTCAATTTTACGATGATTCGTGTCCCAAAGTTGAAGAGATTGTCAAGTCCGTAGTTGCTAAGGCTGTCGCTAAAGAACCCCGCATGGCTGCTTCCTTGCTGAGACTACATTTCCATGACTGTTTTGTCAAGGGTTGTGATGCATCGGTGTTGCTAGATAGCAGTGGAACAATCATCAGCGAAAAGAGGTCAAATCCAAACCGTAATTCAGCTAGAGGATTTGAAGTCATTGAAGAAATTAAATCCACCATAGAGAAAGAGTGTCCCCATACAGTCTCTTGTGCTGATATTTTGACTCTTGCTGCTAGAGATTCAACTGTTCTTACTGGTGGACCAAGTTGGGATGTACCTTTGGGAAGAAGAGATTCTCTTGGTGCAAGCATAAGTGGCTCAAACAACAACATTCCTGCCCCTAACAATACATTCCAAACCATCTTAACTAAATTCAAGCTTAAGGGACTTAACATTGTTGATCTAGTTGCTCTATCTGGTAGCCACACCATAGGAGATTCGCGGTGCACCAGCTTTAGACAAAGACTCTACAACCAAACTGGGAATGGCAAGTCAGATTTCACTCTTGACCAAAACTATGCAGCTCAATTGCGCACTCGGTGCCCAAGATCTGGTGGAGACCAAAATCTGTTTGTCCTAGACTTTGTCACACCGGTAAAATTCGACAACAACTACTACAAGAACTTATTGGCCAACAAGGGTCTCCTAAGTTCTGATGAAATTCTGTTGACAAAGAATCAAGTATCTGCAGATTTAGTGAAAAAGTATGCAGAAAGCAATGATCTTTTCTTTCAACAATTTGCCAAGTCCATGGTTAAGATGGGAAACATTACTCCTTTAACAGGATCAAGGGGTGAAATCAGAAAACGCTGCAGAAAGGTTAACAACTGA

Protein sequence

>Msa0758150

MVNSINFLLLFSLLVFAPFCHCKKKVDGYLYPQFYDDSCPKVEEIVKSVVAKAVAKEPRMAASLLRLHFHDCFVKGCDASVLLDSSGTIISEKRSNPNRNSARGFEVIEEIKSTIEKECPHTVSCADILTLAARDSTVLTGGPSWDVPLGRRDSLGASISGSNNNIPAPNNTFQTILTKFKLKGLNIVDLVALSGSHTIGDSRCTSFRQRLYNQTGNGKSDFTLDQNYAAQLRTRCPRSGGDQNLFVLDFVTPVKFDNNYYKNLLANKGLLSSDEILLTKNQVSADLVKKYAESNDLFFQQFAKSMVKMGNITPLTGSRGEIRKRCRKVNN*