Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901470 | XP_003620882.1 | 90.643 | 513 | 47 | 1 | 1 | 513 | 1 | 512 | 0.0 | 873 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901470 | G7KJ82 | 90.643 | 513 | 47 | 1 | 1 | 513 | 1 | 512 | 0.0 | 873 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043660 | Msa0901470 | 0.812842 | 3.458712e-51 | -8.615850e-47 |
| Msa0047160 | Msa0901470 | 0.802297 | 5.998471e-49 | -8.615850e-47 |
| Msa0076780 | Msa0901470 | 0.807592 | 4.688421e-50 | -8.615850e-47 |
| Msa0115130 | Msa0901470 | 0.807636 | 4.589186e-50 | -8.615850e-47 |
| Msa0605000 | Msa0901470 | 0.840239 | 9.801012e-58 | -8.615850e-47 |
| Msa0619210 | Msa0901470 | 0.807510 | 4.880949e-50 | -8.615850e-47 |
| Msa0685140 | Msa0901470 | 0.828890 | 6.988633e-55 | -8.615850e-47 |
| Msa0709040 | Msa0901470 | 0.828937 | 6.807894e-55 | -8.615850e-47 |
| Msa0719420 | Msa0901470 | 0.821451 | 4.010564e-53 | -8.615850e-47 |
| Msa0763330 | Msa0901470 | 0.807464 | 4.991497e-50 | -8.615850e-47 |
| Msa0772480 | Msa0901470 | 0.826353 | 2.842680e-54 | -8.615850e-47 |
| Msa0789680 | Msa0901470 | 0.820474 | 6.730237e-53 | -8.615850e-47 |
| Msa0798440 | Msa0901470 | 0.828202 | 1.024949e-54 | -8.615850e-47 |
| Msa0802410 | Msa0901470 | 0.822120 | 2.807528e-53 | -8.615850e-47 |
| Msa0830540 | Msa0901470 | 0.801653 | 8.133464e-49 | -8.615850e-47 |
| Msa0137550 | Msa0901470 | 0.812287 | 4.574192e-51 | -8.615850e-47 |
| Msa0146770 | Msa0901470 | 0.818417 | 1.982050e-52 | -8.615850e-47 |
| Msa0189300 | Msa0901470 | 0.804538 | 2.058574e-49 | -8.615850e-47 |
| Msa0231660 | Msa0901470 | 0.825356 | 4.901104e-54 | -8.615850e-47 |
| Msa0489410 | Msa0901470 | 0.811224 | 7.791943e-51 | -8.615850e-47 |
| Msa0542090 | Msa0901470 | 0.810446 | 1.147821e-50 | -8.615850e-47 |
| Msa0542130 | Msa0901470 | 0.817812 | 2.715923e-52 | -8.615850e-47 |
| Msa0554290 | Msa0901470 | 0.831343 | 1.761993e-55 | -8.615850e-47 |
| Msa0581280 | Msa0901470 | 0.812102 | 5.020630e-51 | -8.615850e-47 |
| Msa0901470 | Msa0925770 | 0.860791 | 1.614345e-63 | -8.615850e-47 |
| Msa0901470 | Msa0945440 | 0.828236 | 1.005819e-54 | -8.615850e-47 |
| Msa0901470 | Msa1001370 | 0.861750 | 8.237754e-64 | -8.615850e-47 |
| Msa0901470 | Msa1197320 | 0.815671 | 8.202775e-52 | -8.615850e-47 |
| Msa0901470 | Msa1209200 | 0.801700 | 7.957568e-49 | -8.615850e-47 |
| Msa0901470 | Msa1209260 | 0.808158 | 3.552853e-50 | -8.615850e-47 |
| Msa0901470 | Msa1265630 | 0.803737 | 3.021552e-49 | -8.615850e-47 |
| Msa0901470 | Msa1331710 | 0.803021 | 4.252121e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901470 | MtrunA17_Chr6g0488071 | 90.643 | 513 | 47 | 1 | 1 | 513 | 1 | 512 | 0.0 | 873 |
| Msa0901470 | MtrunA17_Chr6g0488141 | 77.432 | 514 | 46 | 4 | 1 | 513 | 1 | 445 | 0.0 | 706 |
| Msa0901470 | MtrunA17_Chr6g0488291 | 90.545 | 275 | 24 | 1 | 1 | 273 | 1 | 275 | 1.78e-162 | 462 |
| Msa0901470 | MtrunA17_Chr1g0151731 | 32.921 | 404 | 240 | 8 | 14 | 397 | 14 | 406 | 1.23e-56 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0901470 | AT5G11780.1 | 28.283 | 495 | 286 | 17 | 18 | 483 | 21 | 475 | 3.88e-43 | 160 |
Find 102 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCATGGAAATCACAAATT+TGG | 0.169385 | 6_1:+98157883 | Msa0901470:exon |
| TAAGCATCTGAATCTGAATT+TGG | 0.212727 | 6_1:-98160527 | None:intergenic |
| AGACTTTCATGTTGGTTATT+TGG | 0.219723 | 6_1:+98158489 | Msa0901470:CDS |
| GTCTATTCTGCAATCAAATT+TGG | 0.229642 | 6_1:+98158064 | Msa0901470:CDS |
| GGTTGCAGAAAATCTCTTAA+AGG | 0.230767 | 6_1:+98158085 | Msa0901470:CDS |
| AGGCAGGCTGTAACAAATTT+TGG | 0.231723 | 6_1:+98160697 | Msa0901470:three_prime_UTR |
| TGAATGATTTGGCTCGTCTT+TGG | 0.239540 | 6_1:+98158374 | Msa0901470:CDS |
| AGAAAATTCAGGGGATTCTT+TGG | 0.242463 | 6_1:-98157975 | None:intergenic |
| GAATGATTTGGCTCGTCTTT+GGG | 0.283844 | 6_1:+98158375 | Msa0901470:CDS |
| TGAGGATCCATTTGCCTTGC+CGG | 0.285447 | 6_1:-98160000 | None:intergenic |
| GCTTGTTCAGCTTCTGTTAG+TGG | 0.286482 | 6_1:+98158160 | Msa0901470:CDS |
| TCTTTGGTTGATATGATTCT+TGG | 0.304559 | 6_1:+98158289 | Msa0901470:CDS |
| AATTATTTGTGAAGGTAAAT+TGG | 0.321645 | 6_1:-98159940 | None:intergenic |
| GTCCCACCTTTGACAGGAAC+AGG | 0.338931 | 6_1:-98160458 | None:intergenic |
| ACCTTCACAAATAATTAAAC+TGG | 0.339310 | 6_1:+98159947 | Msa0901470:CDS |
| TATGATACATAGTGTGGTTA+AGG | 0.342249 | 6_1:+98158219 | Msa0901470:CDS |
| ATCAAAAGATGGGTCAAGTT+TGG | 0.348170 | 6_1:-98158032 | None:intergenic |
| AGACGGAGATACGAGGGTTT+TGG | 0.348813 | 6_1:-98157856 | None:intergenic |
| TCAATGGAATCAGAAAATTC+AGG | 0.351995 | 6_1:-98157986 | None:intergenic |
| ATGTGGCTGTAGAGTATCTT+AGG | 0.354901 | 6_1:+98159760 | Msa0901470:CDS |
| AATTTCTGAAGAGAAAGATT+TGG | 0.357567 | 6_1:+98158336 | Msa0901470:CDS |
| AGGAACAGTTTGAATTGAAA+AGG | 0.358615 | 6_1:+98158239 | Msa0901470:CDS |
| AATGAAGGAAGTGAAATCTT+TGG | 0.369502 | 6_1:+98158273 | Msa0901470:CDS |
| GGGAATGGAAAAGGGTGAAT+TGG | 0.370113 | 6_1:+98158567 | Msa0901470:CDS |
| TTTGCCTCTGAACTCAATAC+TGG | 0.387425 | 6_1:+98159387 | Msa0901470:CDS |
| GAAAATTCAGGGGATTCTTT+GGG | 0.388993 | 6_1:-98157974 | None:intergenic |
| CCGGCTGCTGGTACTTTAGA+TGG | 0.394377 | 6_1:+98160227 | Msa0901470:CDS |
| CTTTGGTTGATATGATTCTT+GGG | 0.402702 | 6_1:+98158290 | Msa0901470:CDS |
| TTTGTTTGATGCTGTACTAT+TGG | 0.406192 | 6_1:+98159665 | Msa0901470:CDS |
| ATGTCTTGACATTTCACAAC+TGG | 0.411923 | 6_1:+98160199 | Msa0901470:CDS |
| GGAACAGTTTGAATTGAAAA+GGG | 0.418531 | 6_1:+98158240 | Msa0901470:CDS |
| CGTCACTAATCAATTTACTT+TGG | 0.425766 | 6_1:-98160322 | None:intergenic |
| GAAAATGCCGGCAAGGCAAA+TGG | 0.429113 | 6_1:+98159993 | Msa0901470:CDS |
| TACATGATGGGAGGTCTTAG+AGG | 0.431045 | 6_1:+98160599 | Msa0901470:three_prime_UTR |
| TATCTCCGTCTTTGTTCTCA+TGG | 0.439243 | 6_1:+98157868 | Msa0901470:exon |
| TTTCATGTTGGTTATTTGGC+TGG | 0.443028 | 6_1:+98158493 | Msa0901470:CDS |
| CACATGTGTAATAATCAATC+TGG | 0.443588 | 6_1:-98159742 | None:intergenic |
| CATGACAAAATTTAAATATG+AGG | 0.444705 | 6_1:-98160642 | None:intergenic |
| GATGTTTGTGGTTGGATTTG+TGG | 0.446199 | 6_1:+98158463 | Msa0901470:CDS |
| AATGAAAGTCGAAAACGAAA+AGG | 0.455565 | 6_1:+98160383 | Msa0901470:CDS |
| TGAGTAGTGATGTTTGTGGT+TGG | 0.458478 | 6_1:+98158455 | Msa0901470:CDS |
| CAGTTCATGTAATGCATCAA+TGG | 0.462532 | 6_1:-98158002 | None:intergenic |
| TGAAGAGAAAGATTTGGATC+TGG | 0.467629 | 6_1:+98158342 | Msa0901470:CDS |
| CAACTGGAGCCACCGGCTGC+TGG | 0.468422 | 6_1:+98160215 | Msa0901470:CDS |
| AGCCAACACTCCAACTCTTA+AGG | 0.469350 | 6_1:-98158597 | None:intergenic |
| TTTGGCTGGTGCTGTTATGA+TGG | 0.474617 | 6_1:+98158507 | Msa0901470:CDS |
| TGGAAATGTGCCTTAAGAGT+TGG | 0.477292 | 6_1:+98158587 | Msa0901470:CDS |
| AAGGGAGAAGAAAGTAATGA+AGG | 0.479840 | 6_1:+98158258 | Msa0901470:CDS |
| TACAATCAGAGGTTCTTATG+AGG | 0.479898 | 6_1:+98159347 | Msa0901470:intron |
| TAGAATCATCTCTTATAGTA+AGG | 0.480176 | 6_1:+98159905 | Msa0901470:CDS |
| TTTGATATGGGAATGGAAAA+GGG | 0.481409 | 6_1:+98158559 | Msa0901470:CDS |
| TTGCTGCACCTTGAGAATCT+AGG | 0.490715 | 6_1:+98160131 | Msa0901470:CDS |
| ACCAGTTTAATTATTTGTGA+AGG | 0.491766 | 6_1:-98159948 | None:intergenic |
| CGACGATGATGATGCAAATG+AGG | 0.494007 | 6_1:+98158408 | Msa0901470:CDS |
| ACCCACATCACATCAAAAGA+TGG | 0.500998 | 6_1:-98158043 | None:intergenic |
| AGAAGAAAATGCAGGTGAGG+AGG | 0.502653 | 6_1:+98160295 | Msa0901470:CDS |
| CAAAACCCTGTTCCTGTCAA+AGG | 0.504636 | 6_1:+98160452 | Msa0901470:CDS |
| CAATGGAATCAGAAAATTCA+GGG | 0.509780 | 6_1:-98157985 | None:intergenic |
| TACTTACTTATAAGTGCTCT+CGG | 0.514235 | 6_1:-98160023 | None:intergenic |
| ACAAATTTGGTTCCTCATGT+TGG | 0.514732 | 6_1:+98157896 | Msa0901470:CDS |
| GCTGAAGTCCCACCTTTGAC+AGG | 0.517501 | 6_1:-98160464 | None:intergenic |
| TGCACTAAATCATCAAGCAC+AGG | 0.519280 | 6_1:-98160674 | None:intergenic |
| GTTTGATGCTGTACTATTGG+TGG | 0.526853 | 6_1:+98159668 | Msa0901470:CDS |
| CATTTCACAACTGGAGCCAC+CGG | 0.534822 | 6_1:+98160208 | Msa0901470:CDS |
| GCTGCGCAAACTATGAAGTC+GGG | 0.536847 | 6_1:+98160356 | Msa0901470:CDS |
| CTTGTGAGTAGTGATGTTTG+TGG | 0.538129 | 6_1:+98158451 | Msa0901470:CDS |
| ATGAAAGTCGAAAACGAAAA+GGG | 0.541860 | 6_1:+98160384 | Msa0901470:CDS |
| AAGTGATGAGAGTGAAGTGC+AGG | 0.542405 | 6_1:+98160502 | Msa0901470:CDS |
| AGCTGCGCAAACTATGAAGT+CGG | 0.544016 | 6_1:+98160355 | Msa0901470:CDS |
| TTGATGATTTAGTGCAAGGC+AGG | 0.549968 | 6_1:+98160681 | Msa0901470:three_prime_UTR |
| AAACTGGTTTCAAACCAGAA+TGG | 0.551672 | 6_1:+98159963 | Msa0901470:CDS |
| TGTAATAATCAATCTGGTCA+AGG | 0.552695 | 6_1:-98159736 | None:intergenic |
| AACCCTGTTCCTGTCAAAGG+TGG | 0.555661 | 6_1:+98160455 | Msa0901470:CDS |
| AGAAGAAGAAAATGCAGGTG+AGG | 0.561665 | 6_1:+98160292 | Msa0901470:CDS |
| GACGATGATGATGCAAATGA+GGG | 0.566547 | 6_1:+98158409 | Msa0901470:CDS |
| TTCTGATAGAATTTCTTGCA+TGG | 0.570840 | 6_1:-98157948 | None:intergenic |
| AATGGTATCGAGGAAAATGC+CGG | 0.571295 | 6_1:+98159981 | Msa0901470:CDS |
| TGTGGTATAGACTTTCATGT+TGG | 0.585968 | 6_1:+98158481 | Msa0901470:CDS |
| TAATCAATCTGGTCAAGGCA+AGG | 0.590904 | 6_1:-98159731 | None:intergenic |
| CCCACATCACATCAAAAGAT+GGG | 0.595174 | 6_1:-98158042 | None:intergenic |
| GTTGGAGAAGAAGAAAATGC+AGG | 0.595872 | 6_1:+98160287 | Msa0901470:CDS |
| CTCTAATTCCTAGATTCTCA+AGG | 0.598093 | 6_1:-98160139 | None:intergenic |
| ACCCTGTTCCTGTCAAAGGT+GGG | 0.599711 | 6_1:+98160456 | Msa0901470:CDS |
| CCATCTAAAGTACCAGCAGC+CGG | 0.601460 | 6_1:-98160227 | None:intergenic |
| TGCCTTAAGAGTTGGAGTGT+TGG | 0.602128 | 6_1:+98158595 | Msa0901470:CDS |
| GATTTCCATGAGAACAAAGA+CGG | 0.608393 | 6_1:-98157873 | None:intergenic |
| GTGCTTGATGATTTAGTGCA+AGG | 0.616276 | 6_1:+98160677 | Msa0901470:three_prime_UTR |
| TCCCACCTTTGACAGGAACA+GGG | 0.625909 | 6_1:-98160457 | None:intergenic |
| GATGGTAAGATAACAGATGA+CGG | 0.628077 | 6_1:+98160245 | Msa0901470:CDS |
| TATCGAGGAAAATGCCGGCA+AGG | 0.638104 | 6_1:+98159986 | Msa0901470:CDS |
| CAAACATCACTACTCACAAG+AGG | 0.646663 | 6_1:-98158448 | None:intergenic |
| TTCAAACCAGAATGGTATCG+AGG | 0.654461 | 6_1:+98159971 | Msa0901470:CDS |
| CAGATTGATTATTACACATG+TGG | 0.657009 | 6_1:+98159743 | Msa0901470:CDS |
| AGAACAAAGACGGAGATACG+AGG | 0.665893 | 6_1:-98157863 | None:intergenic |
| AATGGAATCAGAAAATTCAG+GGG | 0.669442 | 6_1:-98157984 | None:intergenic |
| GCACTAAATCATCAAGCACA+GGG | 0.672051 | 6_1:-98160673 | None:intergenic |
| CTAACCAGTATTGAGTTCAG+AGG | 0.672560 | 6_1:-98159391 | None:intergenic |
| ACTTATAAGTGCTCTCGGTG+AGG | 0.679393 | 6_1:-98160018 | None:intergenic |
| GAACAAAGACGGAGATACGA+GGG | 0.683687 | 6_1:-98157862 | None:intergenic |
| AGGCAGTGAGAAGTTACATG+TGG | 0.701511 | 6_1:+98160619 | Msa0901470:three_prime_UTR |
| TCTAAAGTACCAGCAGCCGG+TGG | 0.704066 | 6_1:-98160224 | None:intergenic |
| ACGATGATGATGCAAATGAG+GGG | 0.709607 | 6_1:+98158410 | Msa0901470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAAGTATGTTTAATT+TGG | - | chr6_1:98159260-98159279 | None:intergenic | 10.0% |
| !! | ACTAATATCCATAAAAATAA+TGG | - | chr6_1:98159500-98159519 | None:intergenic | 15.0% |
| !!! | TTGTGTTTGTTTTTTGATAT+GGG | + | chr6_1:98158547-98158566 | Msa0901470:CDS | 20.0% |
| !!! | TTTAAGGTAAAATATGTAGT+AGG | - | chr6_1:98158983-98159002 | None:intergenic | 20.0% |
| !!! | TTAGTTATTGACTTATTGTA+TGG | + | chr6_1:98159792-98159811 | Msa0901470:intron | 20.0% |
| !! | AATTATTTGTGAAGGTAAAT+TGG | - | chr6_1:98159943-98159962 | None:intergenic | 20.0% |
| !! | TTTCATAATTCATTCTAGAT+TGG | + | chr6_1:98160108-98160127 | Msa0901470:intron | 20.0% |
| !!! | ATGTTTTTACAATTACATGA+TGG | + | chr6_1:98160586-98160605 | Msa0901470:three_prime_UTR | 20.0% |
| !!! | TGTTTTTACAATTACATGAT+GGG | + | chr6_1:98160587-98160606 | Msa0901470:three_prime_UTR | 20.0% |
| !! | CATGACAAAATTTAAATATG+AGG | - | chr6_1:98160645-98160664 | None:intergenic | 20.0% |
| ! | CTATGTATCATAAAAACAAC+AGG | - | chr6_1:98158211-98158230 | None:intergenic | 25.0% |
| !!! | TGTTTTTATGATACATAGTG+TGG | + | chr6_1:98158213-98158232 | Msa0901470:CDS | 25.0% |
| !! | AATTTCTGAAGAGAAAGATT+TGG | + | chr6_1:98158336-98158355 | Msa0901470:CDS | 25.0% |
| !!! | GTTGTGTTTGTTTTTTGATA+TGG | + | chr6_1:98158546-98158565 | Msa0901470:CDS | 25.0% |
| !!! | TTTGTTTTTTGATATGGGAA+TGG | + | chr6_1:98158552-98158571 | Msa0901470:CDS | 25.0% |
| !!! | TTTCAGAATGTGTACTTTTT+GGG | + | chr6_1:98158631-98158650 | Msa0901470:CDS | 25.0% |
| !! | TCAATGTTTCATAGGTTTTA+AGG | - | chr6_1:98158716-98158735 | None:intergenic | 25.0% |
| ! | GTTGAATGTAACTATATCTT+TGG | + | chr6_1:98158783-98158802 | Msa0901470:intron | 25.0% |
| !! | TAAAACTTTTATCTGGATGA+TGG | + | chr6_1:98158891-98158910 | Msa0901470:intron | 25.0% |
| !!! | ATCAGTGTTTCATAGTTTTA+AGG | - | chr6_1:98158999-98159018 | None:intergenic | 25.0% |
| !! | ACATAGCTTAACTTTTTATC+TGG | + | chr6_1:98159088-98159107 | Msa0901470:intron | 25.0% |
| !! | TTAACTTTTTATCTGGATGA+GGG | + | chr6_1:98159095-98159114 | Msa0901470:intron | 25.0% |
| !! | TTTTGCTAAAAGCTATACTT+TGG | - | chr6_1:98159187-98159206 | None:intergenic | 25.0% |
| !! | TTTATCTTTTGTACAATCAG+AGG | + | chr6_1:98159336-98159355 | Msa0901470:intron | 25.0% |
| ! | CAGATATGGAATAAATAACA+AGG | - | chr6_1:98159425-98159444 | None:intergenic | 25.0% |
| !! | TTAGACATTTTTGCAATACA+CGG | - | chr6_1:98159475-98159494 | None:intergenic | 25.0% |
| !!! | GTCTAACACCATTATTTTTA+TGG | + | chr6_1:98159489-98159508 | Msa0901470:intron | 25.0% |
| ! | TGAAGCATAATTTCTGTTAA+TGG | + | chr6_1:98159857-98159876 | Msa0901470:intron | 25.0% |
| ! | TAGAATCATCTCTTATAGTA+AGG | + | chr6_1:98159905-98159924 | Msa0901470:CDS | 25.0% |
| ! | ACCTTCACAAATAATTAAAC+TGG | + | chr6_1:98159947-98159966 | Msa0901470:CDS | 25.0% |
| ! | ACCAGTTTAATTATTTGTGA+AGG | - | chr6_1:98159951-98159970 | None:intergenic | 25.0% |
| !! | TTTTGTTCTTCCAATATCTA+TGG | + | chr6_1:98160048-98160067 | Msa0901470:intron | 25.0% |
| !!! | ATTTCTGAAACCATAGATAT+TGG | - | chr6_1:98160061-98160080 | None:intergenic | 25.0% |
| ! | AATATCTATGGTTTCAGAAA+TGG | + | chr6_1:98160060-98160079 | Msa0901470:intron | 25.0% |
| TCTCATGGAAATCACAAATT+TGG | + | chr6_1:98157883-98157902 | Msa0901470:exon | 30.0% | |
| TTCTGATAGAATTTCTTGCA+TGG | - | chr6_1:98157951-98157970 | None:intergenic | 30.0% | |
| AATGGAATCAGAAAATTCAG+GGG | - | chr6_1:98157987-98158006 | None:intergenic | 30.0% | |
| CAATGGAATCAGAAAATTCA+GGG | - | chr6_1:98157988-98158007 | None:intergenic | 30.0% | |
| TCAATGGAATCAGAAAATTC+AGG | - | chr6_1:98157989-98158008 | None:intergenic | 30.0% | |
| GTCTATTCTGCAATCAAATT+TGG | + | chr6_1:98158064-98158083 | Msa0901470:CDS | 30.0% | |
| TATGATACATAGTGTGGTTA+AGG | + | chr6_1:98158219-98158238 | Msa0901470:CDS | 30.0% | |
| AGGAACAGTTTGAATTGAAA+AGG | + | chr6_1:98158239-98158258 | Msa0901470:CDS | 30.0% | |
| GGAACAGTTTGAATTGAAAA+GGG | + | chr6_1:98158240-98158259 | Msa0901470:CDS | 30.0% | |
| AATGAAGGAAGTGAAATCTT+TGG | + | chr6_1:98158273-98158292 | Msa0901470:CDS | 30.0% | |
| ! | TCTTTGGTTGATATGATTCT+TGG | + | chr6_1:98158289-98158308 | Msa0901470:CDS | 30.0% |
| ! | CTTTGGTTGATATGATTCTT+GGG | + | chr6_1:98158290-98158309 | Msa0901470:CDS | 30.0% |
| !! | GGTTTTGTCTTTGAATGATT+TGG | + | chr6_1:98158363-98158382 | Msa0901470:CDS | 30.0% |
| ! | AGACTTTCATGTTGGTTATT+TGG | + | chr6_1:98158489-98158508 | Msa0901470:CDS | 30.0% |
| ! | TTTTGATATGGGAATGGAAA+AGG | + | chr6_1:98158558-98158577 | Msa0901470:CDS | 30.0% |
| TTTGATATGGGAATGGAAAA+GGG | + | chr6_1:98158559-98158578 | Msa0901470:CDS | 30.0% | |
| ! | CTTTCAGAATGTGTACTTTT+TGG | + | chr6_1:98158630-98158649 | Msa0901470:CDS | 30.0% |
| !!! | GGTGAGGTTTATTTTGTTTT+TGG | + | chr6_1:98158652-98158671 | Msa0901470:intron | 30.0% |
| TGTCAGTATCAATGTTTCAT+AGG | - | chr6_1:98158724-98158743 | None:intergenic | 30.0% | |
| CTTCACATTGAATGTACATT+CGG | - | chr6_1:98158853-98158872 | None:intergenic | 30.0% | |
| GTACATTCAATGTGAAGTAA+TGG | + | chr6_1:98158856-98158875 | Msa0901470:intron | 30.0% | |
| ! | CATGGCTTAAAACTTTTATC+TGG | + | chr6_1:98158884-98158903 | Msa0901470:intron | 30.0% |
| ! | ATTCCATTCAATGCACTTTT+TGG | + | chr6_1:98158918-98158937 | Msa0901470:intron | 30.0% |
| !! | TTCCATTCAATGCACTTTTT+GGG | + | chr6_1:98158919-98158938 | Msa0901470:intron | 30.0% |
| ! | CTTAACTTTTTATCTGGATG+AGG | + | chr6_1:98159094-98159113 | Msa0901470:intron | 30.0% |
| ! | TTAATTTGGTCTGTCTGAAT+TGG | - | chr6_1:98159246-98159265 | None:intergenic | 30.0% |
| ! | GTGTTGTTCTTTGTTTAATG+TGG | + | chr6_1:98159312-98159331 | Msa0901470:intron | 30.0% |
| ! | TAGACATTTTTGCAATACAC+GGG | - | chr6_1:98159474-98159493 | None:intergenic | 30.0% |
| ! | CCAAATGTTAACAGCTTTAA+TGG | - | chr6_1:98159599-98159618 | None:intergenic | 30.0% |
| CCATTAAAGCTGTTAACATT+TGG | + | chr6_1:98159596-98159615 | Msa0901470:intron | 30.0% | |
| TTTGTTTGATGCTGTACTAT+TGG | + | chr6_1:98159665-98159684 | Msa0901470:CDS | 30.0% | |
| TGTAATAATCAATCTGGTCA+AGG | - | chr6_1:98159739-98159758 | None:intergenic | 30.0% | |
| CACATGTGTAATAATCAATC+TGG | - | chr6_1:98159745-98159764 | None:intergenic | 30.0% | |
| CAGATTGATTATTACACATG+TGG | + | chr6_1:98159743-98159762 | Msa0901470:CDS | 30.0% | |
| TTCTGTTAATGGTTTGATGT+AGG | + | chr6_1:98159868-98159887 | Msa0901470:intron | 30.0% | |
| TCTGTTAATGGTTTGATGTA+GGG | + | chr6_1:98159869-98159888 | Msa0901470:intron | 30.0% | |
| TACTTACTTATAAGTGCTCT+CGG | - | chr6_1:98160026-98160045 | None:intergenic | 30.0% | |
| ! | TCTAGGAATTAGAGTTTTTG+AGG | + | chr6_1:98160148-98160167 | Msa0901470:CDS | 30.0% |
| CAACATTGTCAACGTAAAAA+AGG | - | chr6_1:98160271-98160290 | None:intergenic | 30.0% | |
| !!! | CTTTTTTACGTTGACAATGT+TGG | + | chr6_1:98160269-98160288 | Msa0901470:CDS | 30.0% |
| CGTCACTAATCAATTTACTT+TGG | - | chr6_1:98160325-98160344 | None:intergenic | 30.0% | |
| AATGAAAGTCGAAAACGAAA+AGG | + | chr6_1:98160383-98160402 | Msa0901470:CDS | 30.0% | |
| ATGAAAGTCGAAAACGAAAA+GGG | + | chr6_1:98160384-98160403 | Msa0901470:CDS | 30.0% | |
| TAAGCATCTGAATCTGAATT+TGG | - | chr6_1:98160530-98160549 | None:intergenic | 30.0% | |
| !! | TTTTACAATTACATGATGGG+AGG | + | chr6_1:98160590-98160609 | Msa0901470:three_prime_UTR | 30.0% |
| !!! | ATACGAGGGTTTTGGTTTTT+TGG | - | chr6_1:98157851-98157870 | None:intergenic | 35.0% |
| GATTTCCATGAGAACAAAGA+CGG | - | chr6_1:98157876-98157895 | None:intergenic | 35.0% | |
| ! | ACAAATTTGGTTCCTCATGT+TGG | + | chr6_1:98157896-98157915 | Msa0901470:CDS | 35.0% |
| GAAAATTCAGGGGATTCTTT+GGG | - | chr6_1:98157977-98157996 | None:intergenic | 35.0% | |
| AGAAAATTCAGGGGATTCTT+TGG | - | chr6_1:98157978-98157997 | None:intergenic | 35.0% | |
| CAGTTCATGTAATGCATCAA+TGG | - | chr6_1:98158005-98158024 | None:intergenic | 35.0% | |
| ATCAAAAGATGGGTCAAGTT+TGG | - | chr6_1:98158035-98158054 | None:intergenic | 35.0% | |
| GGTTGCAGAAAATCTCTTAA+AGG | + | chr6_1:98158085-98158104 | Msa0901470:CDS | 35.0% | |
| AAGGGAGAAGAAAGTAATGA+AGG | + | chr6_1:98158258-98158277 | Msa0901470:CDS | 35.0% | |
| TGAAGAGAAAGATTTGGATC+TGG | + | chr6_1:98158342-98158361 | Msa0901470:CDS | 35.0% | |
| TGTGGTATAGACTTTCATGT+TGG | + | chr6_1:98158481-98158500 | Msa0901470:CDS | 35.0% | |
| ! | TTTCATGTTGGTTATTTGGC+TGG | + | chr6_1:98158493-98158512 | Msa0901470:CDS | 35.0% |
| TGTGAAGTAATGGTATTGCA+TGG | + | chr6_1:98158866-98158885 | Msa0901470:intron | 35.0% | |
| ATACCAACAATTCACACCAA+AGG | - | chr6_1:98159067-98159086 | None:intergenic | 35.0% | |
| !! | TGAGTTTGTTAAAATCACCG+CGG | + | chr6_1:98159147-98159166 | Msa0901470:intron | 35.0% |
| ! | TAGCTTTTAGCAAAATCACG+AGG | + | chr6_1:98159192-98159211 | Msa0901470:intron | 35.0% |
| TACAATCAGAGGTTCTTATG+AGG | + | chr6_1:98159347-98159366 | Msa0901470:intron | 35.0% | |
| ! | AAACTGGTTTCAAACCAGAA+TGG | + | chr6_1:98159963-98159982 | Msa0901470:CDS | 35.0% |
| CTCTAATTCCTAGATTCTCA+AGG | - | chr6_1:98160142-98160161 | None:intergenic | 35.0% | |
| ATGTCTTGACATTTCACAAC+TGG | + | chr6_1:98160199-98160218 | Msa0901470:CDS | 35.0% | |
| GATGGTAAGATAACAGATGA+CGG | + | chr6_1:98160245-98160264 | Msa0901470:CDS | 35.0% | |
| TATCTCCGTCTTTGTTCTCA+TGG | + | chr6_1:98157868-98157887 | Msa0901470:exon | 40.0% | |
| ! | GTGTAGTTTTCACCAACATG+AGG | - | chr6_1:98157911-98157930 | None:intergenic | 40.0% |
| !! | CATGGTGTTTTTCAGCTTCA+GGG | - | chr6_1:98157933-98157952 | None:intergenic | 40.0% |
| ! | ACCCATCTTTTGATGTGATG+TGG | + | chr6_1:98158041-98158060 | Msa0901470:CDS | 40.0% |
| CCCACATCACATCAAAAGAT+GGG | - | chr6_1:98158045-98158064 | None:intergenic | 40.0% | |
| ! | CCCATCTTTTGATGTGATGT+GGG | + | chr6_1:98158042-98158061 | Msa0901470:CDS | 40.0% |
| ACCCACATCACATCAAAAGA+TGG | - | chr6_1:98158046-98158065 | None:intergenic | 40.0% | |
| ! | TGAATGATTTGGCTCGTCTT+TGG | + | chr6_1:98158374-98158393 | Msa0901470:CDS | 40.0% |
| ! | GAATGATTTGGCTCGTCTTT+GGG | + | chr6_1:98158375-98158394 | Msa0901470:CDS | 40.0% |
| ! | GACGATGATGATGCAAATGA+GGG | + | chr6_1:98158409-98158428 | Msa0901470:CDS | 40.0% |
| ! | ACGATGATGATGCAAATGAG+GGG | + | chr6_1:98158410-98158429 | Msa0901470:CDS | 40.0% |
| CAAACATCACTACTCACAAG+AGG | - | chr6_1:98158451-98158470 | None:intergenic | 40.0% | |
| CTTGTGAGTAGTGATGTTTG+TGG | + | chr6_1:98158451-98158470 | Msa0901470:CDS | 40.0% | |
| TGAGTAGTGATGTTTGTGGT+TGG | + | chr6_1:98158455-98158474 | Msa0901470:CDS | 40.0% | |
| GATGTTTGTGGTTGGATTTG+TGG | + | chr6_1:98158463-98158482 | Msa0901470:CDS | 40.0% | |
| TGGAAATGTGCCTTAAGAGT+TGG | + | chr6_1:98158587-98158606 | Msa0901470:CDS | 40.0% | |
| !!! | GAATGTGTACTTTTTGGGTG+AGG | + | chr6_1:98158636-98158655 | Msa0901470:intron | 40.0% |
| TATCTTTGGATGTGTCGTGT+CGG | + | chr6_1:98158797-98158816 | Msa0901470:intron | 40.0% | |
| TGTACGTCATTGACACACAT+CGG | + | chr6_1:98158823-98158842 | Msa0901470:intron | 40.0% | |
| ! | CACCCAAAAAGTGCATTGAA+TGG | - | chr6_1:98158924-98158943 | None:intergenic | 40.0% |
| !!! | TTCAATGCACTTTTTGGGTG+AGG | + | chr6_1:98158924-98158943 | Msa0901470:intron | 40.0% |
| ! | ATTCACACCAAAGGCATATC+CGG | - | chr6_1:98159058-98159077 | None:intergenic | 40.0% |
| ! | ATGCCTTTGGTGTGAATTGT+TGG | + | chr6_1:98159061-98159080 | Msa0901470:intron | 40.0% |
| GGATGAATTCACTGTATGCT+TGG | + | chr6_1:98159116-98159135 | Msa0901470:intron | 40.0% | |
| TCACTGTATGCTTGGATTGA+CGG | + | chr6_1:98159124-98159143 | Msa0901470:intron | 40.0% | |
| ATTTGGTCTGTCTGAATTGG+CGG | - | chr6_1:98159243-98159262 | None:intergenic | 40.0% | |
| TTTGCCTCTGAACTCAATAC+TGG | + | chr6_1:98159387-98159406 | Msa0901470:CDS | 40.0% | |
| ! | CTAACCAGTATTGAGTTCAG+AGG | - | chr6_1:98159394-98159413 | None:intergenic | 40.0% |
| CTGTGATTACACTGCAGATA+TGG | - | chr6_1:98159439-98159458 | None:intergenic | 40.0% | |
| GTTTGATGCTGTACTATTGG+TGG | + | chr6_1:98159668-98159687 | Msa0901470:CDS | 40.0% | |
| ! | GGCAAGGCTTTTTATGTTCT+TGG | - | chr6_1:98159718-98159737 | None:intergenic | 40.0% |
| TAATCAATCTGGTCAAGGCA+AGG | - | chr6_1:98159734-98159753 | None:intergenic | 40.0% | |
| ! | ATGTGGCTGTAGAGTATCTT+AGG | + | chr6_1:98159760-98159779 | Msa0901470:CDS | 40.0% |
| TTCAAACCAGAATGGTATCG+AGG | + | chr6_1:98159971-98159990 | Msa0901470:CDS | 40.0% | |
| ! | CATTTTCCTCGATACCATTC+TGG | - | chr6_1:98159980-98159999 | None:intergenic | 40.0% |
| ! | AATGGTATCGAGGAAAATGC+CGG | + | chr6_1:98159981-98160000 | Msa0901470:CDS | 40.0% |
| GGTTTCAGAAATGGTACTCA+AGG | + | chr6_1:98160069-98160088 | Msa0901470:intron | 40.0% | |
| AAATGGTACTCAAGGAAGCA+CGG | + | chr6_1:98160077-98160096 | Msa0901470:intron | 40.0% | |
| GTTGGAGAAGAAGAAAATGC+AGG | + | chr6_1:98160287-98160306 | Msa0901470:CDS | 40.0% | |
| AGAAGAAGAAAATGCAGGTG+AGG | + | chr6_1:98160292-98160311 | Msa0901470:CDS | 40.0% | |
| GCACTAAATCATCAAGCACA+GGG | - | chr6_1:98160676-98160695 | None:intergenic | 40.0% | |
| TGCACTAAATCATCAAGCAC+AGG | - | chr6_1:98160677-98160696 | None:intergenic | 40.0% | |
| ! | GTGCTTGATGATTTAGTGCA+AGG | + | chr6_1:98160677-98160696 | Msa0901470:three_prime_UTR | 40.0% |
| ! | TTGATGATTTAGTGCAAGGC+AGG | + | chr6_1:98160681-98160700 | Msa0901470:three_prime_UTR | 40.0% |
| ! | AGGCAGGCTGTAACAAATTT+TGG | + | chr6_1:98160697-98160716 | Msa0901470:three_prime_UTR | 40.0% |
| GAACAAAGACGGAGATACGA+GGG | - | chr6_1:98157865-98157884 | None:intergenic | 45.0% | |
| AGAACAAAGACGGAGATACG+AGG | - | chr6_1:98157866-98157885 | None:intergenic | 45.0% | |
| !! | GCATGGTGTTTTTCAGCTTC+AGG | - | chr6_1:98157934-98157953 | None:intergenic | 45.0% |
| GCTTGTTCAGCTTCTGTTAG+TGG | + | chr6_1:98158160-98158179 | Msa0901470:CDS | 45.0% | |
| ! | CGACGATGATGATGCAAATG+AGG | + | chr6_1:98158408-98158427 | Msa0901470:CDS | 45.0% |
| !! | TTTGGCTGGTGCTGTTATGA+TGG | + | chr6_1:98158507-98158526 | Msa0901470:CDS | 45.0% |
| GGGAATGGAAAAGGGTGAAT+TGG | + | chr6_1:98158567-98158586 | Msa0901470:CDS | 45.0% | |
| TGCCTTAAGAGTTGGAGTGT+TGG | + | chr6_1:98158595-98158614 | Msa0901470:CDS | 45.0% | |
| AGCCAACACTCCAACTCTTA+AGG | - | chr6_1:98158600-98158619 | None:intergenic | 45.0% | |
| TCATGGAATACGTGTGGTGT+AGG | - | chr6_1:98159029-98159048 | None:intergenic | 45.0% | |
| TACACGTCATGGAATACGTG+TGG | - | chr6_1:98159035-98159054 | None:intergenic | 45.0% | |
| ACGTATTCCATGACGTGTAC+CGG | + | chr6_1:98159036-98159055 | Msa0901470:intron | 45.0% | |
| GTCTGAATTGGCGGTGAAAT+TGG | - | chr6_1:98159234-98159253 | None:intergenic | 45.0% | |
| ACTTATAAGTGCTCTCGGTG+AGG | - | chr6_1:98160021-98160040 | None:intergenic | 45.0% | |
| TTGCTGCACCTTGAGAATCT+AGG | + | chr6_1:98160131-98160150 | Msa0901470:CDS | 45.0% | |
| AGAAGAAAATGCAGGTGAGG+AGG | + | chr6_1:98160295-98160314 | Msa0901470:CDS | 45.0% | |
| AGCTGCGCAAACTATGAAGT+CGG | + | chr6_1:98160355-98160374 | Msa0901470:CDS | 45.0% | |
| CAAAACCCTGTTCCTGTCAA+AGG | + | chr6_1:98160452-98160471 | Msa0901470:CDS | 45.0% | |
| AAGTGATGAGAGTGAAGTGC+AGG | + | chr6_1:98160502-98160521 | Msa0901470:CDS | 45.0% | |
| ! | TACATGATGGGAGGTCTTAG+AGG | + | chr6_1:98160599-98160618 | Msa0901470:three_prime_UTR | 45.0% |
| AGGCAGTGAGAAGTTACATG+TGG | + | chr6_1:98160619-98160638 | Msa0901470:three_prime_UTR | 45.0% | |
| ! | AGACGGAGATACGAGGGTTT+TGG | - | chr6_1:98157859-98157878 | None:intergenic | 50.0% |
| ACGTGTACCGGATATGCCTT+TGG | + | chr6_1:98159048-98159067 | Msa0901470:intron | 50.0% | |
| ! | TGGAGCATCACAAAACACCG+CGG | - | chr6_1:98159167-98159186 | None:intergenic | 50.0% |
| TATCGAGGAAAATGCCGGCA+AGG | + | chr6_1:98159986-98160005 | Msa0901470:CDS | 50.0% | |
| GAAAATGCCGGCAAGGCAAA+TGG | + | chr6_1:98159993-98160012 | Msa0901470:CDS | 50.0% | |
| TGAGGATCCATTTGCCTTGC+CGG | - | chr6_1:98160003-98160022 | None:intergenic | 50.0% | |
| CATTTCACAACTGGAGCCAC+CGG | + | chr6_1:98160208-98160227 | Msa0901470:CDS | 50.0% | |
| ! | CCATCTAAAGTACCAGCAGC+CGG | - | chr6_1:98160230-98160249 | None:intergenic | 50.0% |
| GCTGCGCAAACTATGAAGTC+GGG | + | chr6_1:98160356-98160375 | Msa0901470:CDS | 50.0% | |
| AACCCTGTTCCTGTCAAAGG+TGG | + | chr6_1:98160455-98160474 | Msa0901470:CDS | 50.0% | |
| ACCCTGTTCCTGTCAAAGGT+GGG | + | chr6_1:98160456-98160475 | Msa0901470:CDS | 50.0% | |
| TCCCACCTTTGACAGGAACA+GGG | - | chr6_1:98160460-98160479 | None:intergenic | 50.0% | |
| CTTTGGATGTGTCGTGTCGG+TGG | + | chr6_1:98158800-98158819 | Msa0901470:intron | 55.0% | |
| GGCATATCCGGTACACGTCA+TGG | - | chr6_1:98159046-98159065 | None:intergenic | 55.0% | |
| ! | TCTAAAGTACCAGCAGCCGG+TGG | - | chr6_1:98160227-98160246 | None:intergenic | 55.0% |
| CCGGCTGCTGGTACTTTAGA+TGG | + | chr6_1:98160227-98160246 | Msa0901470:CDS | 55.0% | |
| GTCCCACCTTTGACAGGAAC+AGG | - | chr6_1:98160461-98160480 | None:intergenic | 55.0% | |
| GCTGAAGTCCCACCTTTGAC+AGG | - | chr6_1:98160467-98160486 | None:intergenic | 55.0% | |
| ! | CAACTGGAGCCACCGGCTGC+TGG | + | chr6_1:98160215-98160234 | Msa0901470:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 98157826 | 98160765 | 98157826 | ID=Msa0901470;Name=Msa0901470 |
| chr6_1 | mRNA | 98157826 | 98160765 | 98157826 | ID=Msa0901470-mRNA-1;Parent=Msa0901470;Name=Msa0901470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=61|1|1|1|1|1|5|215|513 |
| chr6_1 | exon | 98157826 | 98158652 | 98157826 | ID=Msa0901470-mRNA-1:exon:17217;Parent=Msa0901470-mRNA-1 |
| chr6_1 | exon | 98159356 | 98159408 | 98159356 | ID=Msa0901470-mRNA-1:exon:17218;Parent=Msa0901470-mRNA-1 |
| chr6_1 | exon | 98159633 | 98159781 | 98159633 | ID=Msa0901470-mRNA-1:exon:17219;Parent=Msa0901470-mRNA-1 |
| chr6_1 | exon | 98159890 | 98160038 | 98159890 | ID=Msa0901470-mRNA-1:exon:17220;Parent=Msa0901470-mRNA-1 |
| chr6_1 | exon | 98160126 | 98160765 | 98160126 | ID=Msa0901470-mRNA-1:exon:17221;Parent=Msa0901470-mRNA-1 |
| chr6_1 | five_prime_UTR | 98157826 | 98157886 | 98157826 | ID=Msa0901470-mRNA-1:five_prime_utr;Parent=Msa0901470-mRNA-1 |
| chr6_1 | CDS | 98157887 | 98158652 | 98157887 | ID=Msa0901470-mRNA-1:cds;Parent=Msa0901470-mRNA-1 |
| chr6_1 | CDS | 98159356 | 98159408 | 98159356 | ID=Msa0901470-mRNA-1:cds;Parent=Msa0901470-mRNA-1 |
| chr6_1 | CDS | 98159633 | 98159781 | 98159633 | ID=Msa0901470-mRNA-1:cds;Parent=Msa0901470-mRNA-1 |
| chr6_1 | CDS | 98159890 | 98160038 | 98159890 | ID=Msa0901470-mRNA-1:cds;Parent=Msa0901470-mRNA-1 |
| chr6_1 | CDS | 98160126 | 98160550 | 98160126 | ID=Msa0901470-mRNA-1:cds;Parent=Msa0901470-mRNA-1 |
| chr6_1 | three_prime_UTR | 98160551 | 98160765 | 98160551 | ID=Msa0901470-mRNA-1:three_prime_utr;Parent=Msa0901470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
