Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1001370 | XP_003620882.1 | 91.423 | 513 | 43 | 1 | 1 | 513 | 1 | 512 | 0.0 | 879 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1001370 | G7KJ82 | 91.423 | 513 | 43 | 1 | 1 | 513 | 1 | 512 | 0.0 | 879 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0043660 | Msa1001370 | 0.808973 | 2.379855e-50 | -8.615850e-47 |
Msa0047160 | Msa1001370 | 0.818524 | 1.874297e-52 | -8.615850e-47 |
Msa0054440 | Msa1001370 | 0.801992 | 6.931073e-49 | -8.615850e-47 |
Msa0076780 | Msa1001370 | 0.814042 | 1.884404e-51 | -8.615850e-47 |
Msa0094470 | Msa1001370 | 0.810700 | 1.011585e-50 | -8.615850e-47 |
Msa0115130 | Msa1001370 | 0.819773 | 9.739947e-53 | -8.615850e-47 |
Msa0605000 | Msa1001370 | 0.843040 | 1.788867e-58 | -8.615850e-47 |
Msa0609000 | Msa1001370 | 0.825138 | 5.520863e-54 | -8.615850e-47 |
Msa0618930 | Msa1001370 | 0.821333 | 4.269133e-53 | -8.615850e-47 |
Msa0619210 | Msa1001370 | 0.803867 | 2.839844e-49 | -8.615850e-47 |
Msa0685140 | Msa1001370 | 0.836600 | 8.510752e-57 | -8.615850e-47 |
Msa0709040 | Msa1001370 | 0.813935 | 1.989209e-51 | -8.615850e-47 |
Msa0715650 | Msa1001370 | 0.807233 | 5.586533e-50 | -8.615850e-47 |
Msa0719420 | Msa1001370 | 0.841145 | 5.673980e-58 | -8.615850e-47 |
Msa0753140 | Msa1001370 | 0.820648 | 6.138069e-53 | -8.615850e-47 |
Msa0763330 | Msa1001370 | 0.807037 | 6.147902e-50 | -8.615850e-47 |
Msa0772480 | Msa1001370 | 0.828860 | 7.109608e-55 | -8.615850e-47 |
Msa0789680 | Msa1001370 | 0.838926 | 2.150759e-57 | -8.615850e-47 |
Msa0798440 | Msa1001370 | 0.824341 | 8.509170e-54 | -8.615850e-47 |
Msa0802410 | Msa1001370 | 0.836510 | 8.972537e-57 | -8.615850e-47 |
Msa0830540 | Msa1001370 | 0.821624 | 3.657425e-53 | -8.615850e-47 |
Msa0839200 | Msa1001370 | 0.809473 | 1.859864e-50 | -8.615850e-47 |
Msa0137550 | Msa1001370 | 0.804199 | 2.422020e-49 | -8.615850e-47 |
Msa0146770 | Msa1001370 | 0.845927 | 2.991876e-59 | -8.615850e-47 |
Msa0165950 | Msa1001370 | 0.807053 | 6.098774e-50 | -8.615850e-47 |
Msa0189300 | Msa1001370 | 0.812326 | 4.485523e-51 | -8.615850e-47 |
Msa0231660 | Msa1001370 | 0.824425 | 8.127629e-54 | -8.615850e-47 |
Msa0387910 | Msa1001370 | 0.806719 | 7.176557e-50 | -8.615850e-47 |
Msa0421260 | Msa1001370 | 0.815149 | 1.071875e-51 | -8.615850e-47 |
Msa1001350 | Msa1001370 | 0.802864 | 4.583387e-49 | -8.615850e-47 |
Msa1001370 | Msa1126850 | 0.813505 | 2.474011e-51 | -8.615850e-47 |
Msa1001370 | Msa1197320 | 0.823230 | 1.548775e-53 | -8.615850e-47 |
Msa1001370 | Msa1209260 | 0.817260 | 3.615945e-52 | -8.615850e-47 |
Msa1001370 | Msa1214120 | 0.806985 | 6.303269e-50 | -8.615850e-47 |
Msa1001370 | Msa1265630 | 0.817168 | 3.793483e-52 | -8.615850e-47 |
Msa1001370 | Msa1331710 | 0.827700 | 1.353829e-54 | -8.615850e-47 |
Msa1001370 | Msa1359970 | 0.816808 | 4.569182e-52 | -8.615850e-47 |
Msa0241470 | Msa1001370 | 0.803959 | 2.718234e-49 | -8.615850e-47 |
Msa0489410 | Msa1001370 | 0.801194 | 1.010000e-48 | -8.615850e-47 |
Msa0511490 | Msa1001370 | 0.800038 | 1.738400e-48 | -8.615850e-47 |
Msa0542090 | Msa1001370 | 0.812835 | 3.471729e-51 | -8.615850e-47 |
Msa0542130 | Msa1001370 | 0.820262 | 7.525313e-53 | -8.615850e-47 |
Msa0581280 | Msa1001370 | 0.802967 | 4.362559e-49 | -8.615850e-47 |
Msa0859180 | Msa1001370 | 0.803899 | 2.796568e-49 | -8.615850e-47 |
Msa0901450 | Msa1001370 | 0.819845 | 9.376814e-53 | -8.615850e-47 |
Msa0901470 | Msa1001370 | 0.861750 | 8.237754e-64 | -8.615850e-47 |
Msa0925770 | Msa1001370 | 0.845399 | 4.162201e-59 | -8.615850e-47 |
Msa0945440 | Msa1001370 | 0.831402 | 1.703520e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1001370 | MtrunA17_Chr6g0488071 | 91.423 | 513 | 43 | 1 | 1 | 513 | 1 | 512 | 0.0 | 879 |
Msa1001370 | MtrunA17_Chr6g0488141 | 77.821 | 514 | 44 | 4 | 1 | 513 | 1 | 445 | 0.0 | 707 |
Msa1001370 | MtrunA17_Chr6g0488291 | 90.545 | 275 | 24 | 1 | 1 | 273 | 1 | 275 | 4.17e-163 | 464 |
Msa1001370 | MtrunA17_Chr1g0151731 | 32.673 | 404 | 241 | 8 | 14 | 397 | 14 | 406 | 4.15e-55 | 193 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1001370 | AT5G11780.1 | 29.360 | 453 | 255 | 14 | 53 | 478 | 57 | 471 | 3.02e-43 | 160 |
Find 104 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCATGGAAATCACAAATT+TGG | 0.169385 | 6_4:+85149557 | Msa1001370:exon |
TAAGCATCTGAATCTGAATT+TGG | 0.212727 | 6_4:-85152234 | None:intergenic |
AGACTTTCATGTTGGTTATT+TGG | 0.219723 | 6_4:+85150163 | Msa1001370:CDS |
GTCTATTCTGCAATCAAATT+TGG | 0.229642 | 6_4:+85149738 | Msa1001370:CDS |
GGTTGCAGAAAATCTCTTAA+AGG | 0.230767 | 6_4:+85149759 | Msa1001370:CDS |
AGACAGGCTGTAACAAATTT+TGG | 0.231771 | 6_4:+85152403 | Msa1001370:three_prime_UTR |
TGAATGATTTGGCTCGTCTT+TGG | 0.239540 | 6_4:+85150048 | Msa1001370:CDS |
AGAAAATTCAGGGGATTCTT+TGG | 0.242463 | 6_4:-85149649 | None:intergenic |
ATTACATGATGGGAGGTCTT+AGG | 0.259763 | 6_4:+85152303 | Msa1001370:three_prime_UTR |
GAATGATTTGGCTCGTCTTT+GGG | 0.283844 | 6_4:+85150049 | Msa1001370:CDS |
TGAGGATCCATTTGCCTTGC+CGG | 0.285447 | 6_4:-85151707 | None:intergenic |
GCTTGTTCAGCTTCTGTTAG+TGG | 0.286482 | 6_4:+85149834 | Msa1001370:CDS |
TCTTTGGTTGATATGATTCT+TGG | 0.304559 | 6_4:+85149963 | Msa1001370:CDS |
AATTATTTGTGAAGGTAAAT+TGG | 0.321645 | 6_4:-85151647 | None:intergenic |
ACCTTCACAAATAATTAAAC+TGG | 0.339310 | 6_4:+85151654 | Msa1001370:CDS |
TATGATACATAGTGTGGTTA+AGG | 0.342249 | 6_4:+85149893 | Msa1001370:CDS |
ATCAAAAGATGGGTCAAGTT+TGG | 0.348170 | 6_4:-85149706 | None:intergenic |
AGACGGAGATACGAGGGTTT+TGG | 0.348813 | 6_4:-85149530 | None:intergenic |
ATGTGGCTGTAGAGTATCTT+AGG | 0.354901 | 6_4:+85151467 | Msa1001370:CDS |
TCAATGGAATGAGAAAATTC+AGG | 0.355310 | 6_4:-85149660 | None:intergenic |
TGAAGAGAAAGATTTGGATT+TGG | 0.356237 | 6_4:+85150016 | Msa1001370:CDS |
AATTTCTGAAGAGAAAGATT+TGG | 0.357567 | 6_4:+85150010 | Msa1001370:CDS |
AGGAACAGTTTGAATTGAAA+AGG | 0.358615 | 6_4:+85149913 | Msa1001370:CDS |
AATGAAGGAAGTGAAATCTT+TGG | 0.369502 | 6_4:+85149947 | Msa1001370:CDS |
GGGAATGGAAAAGGGTGAAT+TGG | 0.370113 | 6_4:+85150241 | Msa1001370:CDS |
TTTATTTGATGCTGTACTAT+TGG | 0.385927 | 6_4:+85151372 | Msa1001370:CDS |
TTTGCCTCTGAACTCAATAC+TGG | 0.387425 | 6_4:+85151094 | Msa1001370:CDS |
CCGGCTGCTGGTACTTTAGA+TGG | 0.394377 | 6_4:+85151934 | Msa1001370:CDS |
CTTTGGTTGATATGATTCTT+GGG | 0.402702 | 6_4:+85149964 | Msa1001370:CDS |
GAAAATTCAGGGGATTCTTT+GGG | 0.405005 | 6_4:-85149648 | None:intergenic |
ATGTCTTGACATTTCACAAC+TGG | 0.411923 | 6_4:+85151906 | Msa1001370:CDS |
GGAACAGTTTGAATTGAAAA+GGG | 0.418531 | 6_4:+85149914 | Msa1001370:CDS |
TTACATGATGGGAGGTCTTA+GGG | 0.423417 | 6_4:+85152304 | Msa1001370:three_prime_UTR |
GAAAATGCCGGCAAGGCAAA+TGG | 0.429113 | 6_4:+85151700 | Msa1001370:CDS |
TATCTCCGTCTTTGTTCTCA+TGG | 0.439243 | 6_4:+85149542 | Msa1001370:exon |
TTTCATGTTGGTTATTTGGC+TGG | 0.443028 | 6_4:+85150167 | Msa1001370:CDS |
CACATGTGTAATAATCAATC+TGG | 0.443588 | 6_4:-85151449 | None:intergenic |
CATGACAAAATTTAAATATG+AGG | 0.444705 | 6_4:-85152348 | None:intergenic |
CAGTTCATGTGATGCATCAA+TGG | 0.445537 | 6_4:-85149676 | None:intergenic |
GATGTTTGTGGTTGGATTTG+TGG | 0.446199 | 6_4:+85150137 | Msa1001370:CDS |
TGAGTAGTGATGTTTGTGGT+TGG | 0.458478 | 6_4:+85150129 | Msa1001370:CDS |
CAACTGGAGCCACCGGCTGC+TGG | 0.468422 | 6_4:+85151922 | Msa1001370:CDS |
AGCCAACACTCCAACTCTTA+AGG | 0.469350 | 6_4:-85150271 | None:intergenic |
TTTGGCTGGTGCTGTTATGA+TGG | 0.474617 | 6_4:+85150181 | Msa1001370:CDS |
TGGAAATGTGCCTTAAGAGT+TGG | 0.477292 | 6_4:+85150261 | Msa1001370:CDS |
CATGCTTTGCAATTACATGA+TGG | 0.478224 | 6_4:+85152292 | Msa1001370:three_prime_UTR |
AAGGGAGAAGAAAGTAATGA+AGG | 0.479840 | 6_4:+85149932 | Msa1001370:CDS |
TACAATCAGAGGTTCTTATG+AGG | 0.479898 | 6_4:+85151054 | Msa1001370:intron |
TAGAATCATCTCTTATAGTA+AGG | 0.480176 | 6_4:+85151612 | Msa1001370:CDS |
TTTGATATGGGAATGGAAAA+GGG | 0.481409 | 6_4:+85150233 | Msa1001370:CDS |
CGTCACTAATCAATGTGCTT+TGG | 0.488336 | 6_4:-85152029 | None:intergenic |
TTGCTGCACCTTGAGAATCT+AGG | 0.490715 | 6_4:+85151838 | Msa1001370:CDS |
ACCAGTTTAATTATTTGTGA+AGG | 0.491766 | 6_4:-85151655 | None:intergenic |
CGACGATGATGATGCAAATG+AGG | 0.494007 | 6_4:+85150082 | Msa1001370:CDS |
CGTTGACAATGTTGGAGAAG+AGG | 0.496608 | 6_4:+85151984 | Msa1001370:CDS |
ATTTGATGCTGTACTATTGG+TGG | 0.496812 | 6_4:+85151375 | Msa1001370:CDS |
ACCCACATCACATCAAAAGA+TGG | 0.500998 | 6_4:-85149717 | None:intergenic |
CAATGGAATGAGAAAATTCA+GGG | 0.509336 | 6_4:-85149659 | None:intergenic |
AGGTAAAAGCAATGGAAAGA+AGG | 0.510015 | 6_4:+85152110 | Msa1001370:CDS |
CAAAAGTCTGTTCCTGTCAA+AGG | 0.510853 | 6_4:+85152159 | Msa1001370:CDS |
TACTTACTTATAAGTGCTCT+CGG | 0.514235 | 6_4:-85151730 | None:intergenic |
ACAAATTTGGTTCCTCATGT+TGG | 0.514732 | 6_4:+85149570 | Msa1001370:CDS |
GCTGAAGTCCCACCTTTGAC+AGG | 0.517501 | 6_4:-85152171 | None:intergenic |
TGCACTAAATCATCAAGCAC+AGG | 0.519690 | 6_4:-85152380 | None:intergenic |
AACGAAAGTCGAAAACGAAA+AGG | 0.522293 | 6_4:+85152090 | Msa1001370:CDS |
ATGCTTTGCAATTACATGAT+GGG | 0.526795 | 6_4:+85152293 | Msa1001370:three_prime_UTR |
CATTTCACAACTGGAGCCAC+CGG | 0.534822 | 6_4:+85151915 | Msa1001370:CDS |
CTTGTGAGTAGTGATGTTTG+TGG | 0.538129 | 6_4:+85150125 | Msa1001370:CDS |
AAGTGATGAGAGTGAAGTGC+AGG | 0.542405 | 6_4:+85152209 | Msa1001370:CDS |
AAACGAAAAGGTAAAAGCAA+TGG | 0.543735 | 6_4:+85152102 | Msa1001370:CDS |
AAACTGGTTTCAAACCAGAA+TGG | 0.551672 | 6_4:+85151670 | Msa1001370:CDS |
TGTAATAATCAATCTGGTCA+AGG | 0.552695 | 6_4:-85151443 | None:intergenic |
AAGTCTGTTCCTGTCAAAGG+TGG | 0.555882 | 6_4:+85152162 | Msa1001370:CDS |
TTGATGATTTAGTGCAAGAC+AGG | 0.559554 | 6_4:+85152387 | Msa1001370:three_prime_UTR |
GACGATGATGATGCAAATGA+GGG | 0.566547 | 6_4:+85150083 | Msa1001370:CDS |
TTCTGATAGAATTTCTTGCA+TGG | 0.570840 | 6_4:-85149622 | None:intergenic |
AATGGTATCGAGGAAAATGC+CGG | 0.571295 | 6_4:+85151688 | Msa1001370:CDS |
TGTGGTATAGACTTTCATGT+TGG | 0.585968 | 6_4:+85150155 | Msa1001370:CDS |
TAATCAATCTGGTCAAGGCA+AGG | 0.590904 | 6_4:-85151438 | None:intergenic |
CCCACATCACATCAAAAGAT+GGG | 0.595174 | 6_4:-85149716 | None:intergenic |
GTTGGAGAAGAGGAAAATGC+AGG | 0.597539 | 6_4:+85151994 | Msa1001370:CDS |
CTCTAATTCCTAGATTCTCA+AGG | 0.598093 | 6_4:-85151846 | None:intergenic |
CCATCTAAAGTACCAGCAGC+CGG | 0.601460 | 6_4:-85151934 | None:intergenic |
TGCCTTAAGAGTTGGAGTGT+TGG | 0.602128 | 6_4:+85150269 | Msa1001370:CDS |
GATTTCCATGAGAACAAAGA+CGG | 0.608393 | 6_4:-85149547 | None:intergenic |
AGTCTGTTCCTGTCAAAGGT+GGG | 0.608701 | 6_4:+85152163 | Msa1001370:CDS |
TACATGATGGGAGGTCTTAG+GGG | 0.617121 | 6_4:+85152305 | Msa1001370:three_prime_UTR |
AGAAGAGGAAAATGCAGGCG+AGG | 0.620669 | 6_4:+85151999 | Msa1001370:CDS |
AGAGGAAAATGCAGGCGAGG+AGG | 0.627324 | 6_4:+85152002 | Msa1001370:CDS |
GATGGTAAGATAACAGATGA+CGG | 0.628077 | 6_4:+85151952 | Msa1001370:CDS |
TATCGAGGAAAATGCCGGCA+AGG | 0.638104 | 6_4:+85151693 | Msa1001370:CDS |
CTTTGCAATTACATGATGGG+AGG | 0.641020 | 6_4:+85152296 | Msa1001370:three_prime_UTR |
CAAACATCACTACTCACAAG+AGG | 0.646663 | 6_4:-85150122 | None:intergenic |
TTCAAACCAGAATGGTATCG+AGG | 0.654461 | 6_4:+85151678 | Msa1001370:CDS |
CAGATTGATTATTACACATG+TGG | 0.657009 | 6_4:+85151450 | Msa1001370:CDS |
AGAACAAAGACGGAGATACG+AGG | 0.665893 | 6_4:-85149537 | None:intergenic |
CTAACCAGTATTGAGTTCAG+AGG | 0.672560 | 6_4:-85151098 | None:intergenic |
ACTTATAAGTGCTCTCGGTG+AGG | 0.679393 | 6_4:-85151725 | None:intergenic |
GAACAAAGACGGAGATACGA+GGG | 0.683687 | 6_4:-85149536 | None:intergenic |
GCACTAAATCATCAAGCACA+GGG | 0.684590 | 6_4:-85152379 | None:intergenic |
AATGGAATGAGAAAATTCAG+GGG | 0.687354 | 6_4:-85149658 | None:intergenic |
GGGCAGTGAGAAGTTACATG+TGG | 0.701511 | 6_4:+85152325 | Msa1001370:three_prime_UTR |
TCTAAAGTACCAGCAGCCGG+TGG | 0.704066 | 6_4:-85151931 | None:intergenic |
ACGATGATGATGCAAATGAG+GGG | 0.709607 | 6_4:+85150084 | Msa1001370:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATAAGTATGTTTAATT+TGG | - | chr6_4:85150967-85150986 | None:intergenic | 10.0% |
!! | ACTAATATCCATAAAAATAA+TGG | - | chr6_4:85151207-85151226 | None:intergenic | 15.0% |
!!! | TTGTGTTTGTTTTTTGATAT+GGG | + | chr6_4:85150221-85150240 | Msa1001370:CDS | 20.0% |
!!! | TTTAAGGTAAAATATGTAGT+AGG | - | chr6_4:85150657-85150676 | None:intergenic | 20.0% |
!! | ACATTATCTCAAATTATCAT+CGG | - | chr6_4:85150724-85150743 | None:intergenic | 20.0% |
!!! | TTAGTTATTGACTTATTGTA+TGG | + | chr6_4:85151499-85151518 | Msa1001370:intron | 20.0% |
!! | AATTATTTGTGAAGGTAAAT+TGG | - | chr6_4:85151650-85151669 | None:intergenic | 20.0% |
!!! | TTTTGTTCTTCTAATATCTA+TGG | + | chr6_4:85151755-85151774 | Msa1001370:intron | 20.0% |
!! | TTTCATAATTCATTCTAGAT+TGG | + | chr6_4:85151815-85151834 | Msa1001370:intron | 20.0% |
!! | CATGACAAAATTTAAATATG+AGG | - | chr6_4:85152351-85152370 | None:intergenic | 20.0% |
! | CTATGTATCATAAAAACAAC+AGG | - | chr6_4:85149885-85149904 | None:intergenic | 25.0% |
!!! | TGTTTTTATGATACATAGTG+TGG | + | chr6_4:85149887-85149906 | Msa1001370:CDS | 25.0% |
!! | AATTTCTGAAGAGAAAGATT+TGG | + | chr6_4:85150010-85150029 | Msa1001370:CDS | 25.0% |
!!! | GTTGTGTTTGTTTTTTGATA+TGG | + | chr6_4:85150220-85150239 | Msa1001370:CDS | 25.0% |
!!! | TTTGTTTTTTGATATGGGAA+TGG | + | chr6_4:85150226-85150245 | Msa1001370:CDS | 25.0% |
!!! | TTTCAGAATGTGTACTTTTT+GGG | + | chr6_4:85150305-85150324 | Msa1001370:CDS | 25.0% |
!! | TCAATGTTTCATAGGTTTTA+GGG | - | chr6_4:85150390-85150409 | None:intergenic | 25.0% |
!! | ATCAATGTTTCATAGGTTTT+AGG | - | chr6_4:85150391-85150410 | None:intergenic | 25.0% |
! | GTTGAATGTAACTATATCTT+TGG | + | chr6_4:85150457-85150476 | Msa1001370:intron | 25.0% |
!! | CATAGCTTAAAACTTTTATC+TGG | + | chr6_4:85150558-85150577 | Msa1001370:intron | 25.0% |
!! | TAAAACTTTTATCTGGATGA+TGG | + | chr6_4:85150565-85150584 | Msa1001370:intron | 25.0% |
!!! | ATCAGTGTTTCATAGTTTTA+AGG | - | chr6_4:85150673-85150692 | None:intergenic | 25.0% |
!! | ACATAGCTTAACTTTTTATC+TGG | + | chr6_4:85150795-85150814 | Msa1001370:intron | 25.0% |
!! | TTAACTTTTTATCTGGATGA+GGG | + | chr6_4:85150802-85150821 | Msa1001370:intron | 25.0% |
!! | TTTTGCTAAAAGCTATACTT+TGG | - | chr6_4:85150894-85150913 | None:intergenic | 25.0% |
!! | ATGTTGTTCTTTGTTTAATG+TGG | + | chr6_4:85151019-85151038 | Msa1001370:intron | 25.0% |
!! | TTTATCTTTTGTACAATCAG+AGG | + | chr6_4:85151043-85151062 | Msa1001370:intron | 25.0% |
! | CAGATATGGAATAAATAACA+AGG | - | chr6_4:85151132-85151151 | None:intergenic | 25.0% |
!! | TTAGACATTTTTGCAATACA+CGG | - | chr6_4:85151182-85151201 | None:intergenic | 25.0% |
!!! | GTCTAACACCATTATTTTTA+TGG | + | chr6_4:85151196-85151215 | Msa1001370:intron | 25.0% |
! | TTTATTTGATGCTGTACTAT+TGG | + | chr6_4:85151372-85151391 | Msa1001370:CDS | 25.0% |
! | TGAAGCATAATTTCTGTTAA+TGG | + | chr6_4:85151564-85151583 | Msa1001370:intron | 25.0% |
! | TAGAATCATCTCTTATAGTA+AGG | + | chr6_4:85151612-85151631 | Msa1001370:CDS | 25.0% |
! | ACCTTCACAAATAATTAAAC+TGG | + | chr6_4:85151654-85151673 | Msa1001370:CDS | 25.0% |
! | ACCAGTTTAATTATTTGTGA+AGG | - | chr6_4:85151658-85151677 | None:intergenic | 25.0% |
! | AATATCTATGGTTTCAGAAA+TGG | + | chr6_4:85151767-85151786 | Msa1001370:intron | 25.0% |
TCTCATGGAAATCACAAATT+TGG | + | chr6_4:85149557-85149576 | Msa1001370:exon | 30.0% | |
TTCTGATAGAATTTCTTGCA+TGG | - | chr6_4:85149625-85149644 | None:intergenic | 30.0% | |
AATGGAATGAGAAAATTCAG+GGG | - | chr6_4:85149661-85149680 | None:intergenic | 30.0% | |
CAATGGAATGAGAAAATTCA+GGG | - | chr6_4:85149662-85149681 | None:intergenic | 30.0% | |
TCAATGGAATGAGAAAATTC+AGG | - | chr6_4:85149663-85149682 | None:intergenic | 30.0% | |
GTCTATTCTGCAATCAAATT+TGG | + | chr6_4:85149738-85149757 | Msa1001370:CDS | 30.0% | |
TATGATACATAGTGTGGTTA+AGG | + | chr6_4:85149893-85149912 | Msa1001370:CDS | 30.0% | |
AGGAACAGTTTGAATTGAAA+AGG | + | chr6_4:85149913-85149932 | Msa1001370:CDS | 30.0% | |
GGAACAGTTTGAATTGAAAA+GGG | + | chr6_4:85149914-85149933 | Msa1001370:CDS | 30.0% | |
AATGAAGGAAGTGAAATCTT+TGG | + | chr6_4:85149947-85149966 | Msa1001370:CDS | 30.0% | |
! | TCTTTGGTTGATATGATTCT+TGG | + | chr6_4:85149963-85149982 | Msa1001370:CDS | 30.0% |
! | CTTTGGTTGATATGATTCTT+GGG | + | chr6_4:85149964-85149983 | Msa1001370:CDS | 30.0% |
TGAAGAGAAAGATTTGGATT+TGG | + | chr6_4:85150016-85150035 | Msa1001370:CDS | 30.0% | |
!! | GGTTTTGTCTTTGAATGATT+TGG | + | chr6_4:85150037-85150056 | Msa1001370:CDS | 30.0% |
! | AGACTTTCATGTTGGTTATT+TGG | + | chr6_4:85150163-85150182 | Msa1001370:CDS | 30.0% |
! | TTTTGATATGGGAATGGAAA+AGG | + | chr6_4:85150232-85150251 | Msa1001370:CDS | 30.0% |
TTTGATATGGGAATGGAAAA+GGG | + | chr6_4:85150233-85150252 | Msa1001370:CDS | 30.0% | |
! | CTTTCAGAATGTGTACTTTT+TGG | + | chr6_4:85150304-85150323 | Msa1001370:CDS | 30.0% |
!!! | GGTGAGGTTTATTTTGTTTT+TGG | + | chr6_4:85150326-85150345 | Msa1001370:intron | 30.0% |
TGTCAGTATCAATGTTTCAT+AGG | - | chr6_4:85150398-85150417 | None:intergenic | 30.0% | |
CTTCACATTGAATGTACATT+CGG | - | chr6_4:85150527-85150546 | None:intergenic | 30.0% | |
GTACATTCAATGTGAAGTAA+TGG | + | chr6_4:85150530-85150549 | Msa1001370:intron | 30.0% | |
! | ATTCCATTCAATGCACTTTT+TGG | + | chr6_4:85150592-85150611 | Msa1001370:intron | 30.0% |
!! | TTCCATTCAATGCACTTTTT+GGG | + | chr6_4:85150593-85150612 | Msa1001370:intron | 30.0% |
! | CTTAACTTTTTATCTGGATG+AGG | + | chr6_4:85150801-85150820 | Msa1001370:intron | 30.0% |
! | TAGCTTTTAGCAAAATCACA+AGG | + | chr6_4:85150899-85150918 | Msa1001370:intron | 30.0% |
! | TTAATTTGGTCTGTCTGAAT+TGG | - | chr6_4:85150953-85150972 | None:intergenic | 30.0% |
! | TAGACATTTTTGCAATACAC+GGG | - | chr6_4:85151181-85151200 | None:intergenic | 30.0% |
! | CCAAATGTTAACAGCTTTAA+TGG | - | chr6_4:85151306-85151325 | None:intergenic | 30.0% |
CCATTAAAGCTGTTAACATT+TGG | + | chr6_4:85151303-85151322 | Msa1001370:intron | 30.0% | |
TGTAATAATCAATCTGGTCA+AGG | - | chr6_4:85151446-85151465 | None:intergenic | 30.0% | |
CACATGTGTAATAATCAATC+TGG | - | chr6_4:85151452-85151471 | None:intergenic | 30.0% | |
CAGATTGATTATTACACATG+TGG | + | chr6_4:85151450-85151469 | Msa1001370:CDS | 30.0% | |
TTCTGTTAATGGTTTGATGT+AGG | + | chr6_4:85151575-85151594 | Msa1001370:intron | 30.0% | |
TCTGTTAATGGTTTGATGTA+GGG | + | chr6_4:85151576-85151595 | Msa1001370:intron | 30.0% | |
TACTTACTTATAAGTGCTCT+CGG | - | chr6_4:85151733-85151752 | None:intergenic | 30.0% | |
! | TCTAGGAATTAGAGTTTTTG+AGG | + | chr6_4:85151855-85151874 | Msa1001370:CDS | 30.0% |
CAACATTGTCAACGTAAAAA+AGG | - | chr6_4:85151978-85151997 | None:intergenic | 30.0% | |
!!! | CTTTTTTACGTTGACAATGT+TGG | + | chr6_4:85151976-85151995 | Msa1001370:CDS | 30.0% |
AAACGAAAAGGTAAAAGCAA+TGG | + | chr6_4:85152102-85152121 | Msa1001370:CDS | 30.0% | |
TAAGCATCTGAATCTGAATT+TGG | - | chr6_4:85152237-85152256 | None:intergenic | 30.0% | |
ATGCTTTGCAATTACATGAT+GGG | + | chr6_4:85152293-85152312 | Msa1001370:three_prime_UTR | 30.0% | |
!!! | ATACGAGGGTTTTGGTTTTT+TGG | - | chr6_4:85149525-85149544 | None:intergenic | 35.0% |
GATTTCCATGAGAACAAAGA+CGG | - | chr6_4:85149550-85149569 | None:intergenic | 35.0% | |
! | ACAAATTTGGTTCCTCATGT+TGG | + | chr6_4:85149570-85149589 | Msa1001370:CDS | 35.0% |
GAAAATTCAGGGGATTCTTT+GGG | - | chr6_4:85149651-85149670 | None:intergenic | 35.0% | |
AGAAAATTCAGGGGATTCTT+TGG | - | chr6_4:85149652-85149671 | None:intergenic | 35.0% | |
ATCAAAAGATGGGTCAAGTT+TGG | - | chr6_4:85149709-85149728 | None:intergenic | 35.0% | |
GGTTGCAGAAAATCTCTTAA+AGG | + | chr6_4:85149759-85149778 | Msa1001370:CDS | 35.0% | |
AAGGGAGAAGAAAGTAATGA+AGG | + | chr6_4:85149932-85149951 | Msa1001370:CDS | 35.0% | |
TGTGGTATAGACTTTCATGT+TGG | + | chr6_4:85150155-85150174 | Msa1001370:CDS | 35.0% | |
! | TTTCATGTTGGTTATTTGGC+TGG | + | chr6_4:85150167-85150186 | Msa1001370:CDS | 35.0% |
ATACCAACAATTCACACCAA+AGG | - | chr6_4:85150774-85150793 | None:intergenic | 35.0% | |
!! | TGAGTTTGTTAAAATCACCG+TGG | + | chr6_4:85150854-85150873 | Msa1001370:intron | 35.0% |
TACAATCAGAGGTTCTTATG+AGG | + | chr6_4:85151054-85151073 | Msa1001370:intron | 35.0% | |
ATTTGATGCTGTACTATTGG+TGG | + | chr6_4:85151375-85151394 | Msa1001370:CDS | 35.0% | |
! | AAACTGGTTTCAAACCAGAA+TGG | + | chr6_4:85151670-85151689 | Msa1001370:CDS | 35.0% |
CTCTAATTCCTAGATTCTCA+AGG | - | chr6_4:85151849-85151868 | None:intergenic | 35.0% | |
ATGTCTTGACATTTCACAAC+TGG | + | chr6_4:85151906-85151925 | Msa1001370:CDS | 35.0% | |
GATGGTAAGATAACAGATGA+CGG | + | chr6_4:85151952-85151971 | Msa1001370:CDS | 35.0% | |
AACGAAAGTCGAAAACGAAA+AGG | + | chr6_4:85152090-85152109 | Msa1001370:CDS | 35.0% | |
AGGTAAAAGCAATGGAAAGA+AGG | + | chr6_4:85152110-85152129 | Msa1001370:CDS | 35.0% | |
CATGCTTTGCAATTACATGA+TGG | + | chr6_4:85152292-85152311 | Msa1001370:three_prime_UTR | 35.0% | |
! | TTGATGATTTAGTGCAAGAC+AGG | + | chr6_4:85152387-85152406 | Msa1001370:three_prime_UTR | 35.0% |
! | AGACAGGCTGTAACAAATTT+TGG | + | chr6_4:85152403-85152422 | Msa1001370:three_prime_UTR | 35.0% |
TATCTCCGTCTTTGTTCTCA+TGG | + | chr6_4:85149542-85149561 | Msa1001370:exon | 40.0% | |
! | GTGTAGTTTTCACCAACATG+AGG | - | chr6_4:85149585-85149604 | None:intergenic | 40.0% |
!! | CATGGTGTTTTTCAGCTTCA+GGG | - | chr6_4:85149607-85149626 | None:intergenic | 40.0% |
CAGTTCATGTGATGCATCAA+TGG | - | chr6_4:85149679-85149698 | None:intergenic | 40.0% | |
! | ACCCATCTTTTGATGTGATG+TGG | + | chr6_4:85149715-85149734 | Msa1001370:CDS | 40.0% |
CCCACATCACATCAAAAGAT+GGG | - | chr6_4:85149719-85149738 | None:intergenic | 40.0% | |
! | CCCATCTTTTGATGTGATGT+GGG | + | chr6_4:85149716-85149735 | Msa1001370:CDS | 40.0% |
ACCCACATCACATCAAAAGA+TGG | - | chr6_4:85149720-85149739 | None:intergenic | 40.0% | |
! | TGAATGATTTGGCTCGTCTT+TGG | + | chr6_4:85150048-85150067 | Msa1001370:CDS | 40.0% |
! | GAATGATTTGGCTCGTCTTT+GGG | + | chr6_4:85150049-85150068 | Msa1001370:CDS | 40.0% |
! | GACGATGATGATGCAAATGA+GGG | + | chr6_4:85150083-85150102 | Msa1001370:CDS | 40.0% |
! | ACGATGATGATGCAAATGAG+GGG | + | chr6_4:85150084-85150103 | Msa1001370:CDS | 40.0% |
CAAACATCACTACTCACAAG+AGG | - | chr6_4:85150125-85150144 | None:intergenic | 40.0% | |
CTTGTGAGTAGTGATGTTTG+TGG | + | chr6_4:85150125-85150144 | Msa1001370:CDS | 40.0% | |
TGAGTAGTGATGTTTGTGGT+TGG | + | chr6_4:85150129-85150148 | Msa1001370:CDS | 40.0% | |
GATGTTTGTGGTTGGATTTG+TGG | + | chr6_4:85150137-85150156 | Msa1001370:CDS | 40.0% | |
TGGAAATGTGCCTTAAGAGT+TGG | + | chr6_4:85150261-85150280 | Msa1001370:CDS | 40.0% | |
!!! | GAATGTGTACTTTTTGGGTG+AGG | + | chr6_4:85150310-85150329 | Msa1001370:intron | 40.0% |
TATCTTTGGATGTGTCGTGT+CGG | + | chr6_4:85150471-85150490 | Msa1001370:intron | 40.0% | |
! | CACCCAAAAAGTGCATTGAA+TGG | - | chr6_4:85150598-85150617 | None:intergenic | 40.0% |
!!! | TTCAATGCACTTTTTGGGTG+AGG | + | chr6_4:85150598-85150617 | Msa1001370:intron | 40.0% |
ATCATCGGTCTTAATACGTG+TGG | - | chr6_4:85150709-85150728 | None:intergenic | 40.0% | |
! | ATTCACACCAAAGGCATATC+CGG | - | chr6_4:85150765-85150784 | None:intergenic | 40.0% |
! | ATGCCTTTGGTGTGAATTGT+TGG | + | chr6_4:85150768-85150787 | Msa1001370:intron | 40.0% |
GGATGAATTCACTGTATGCT+TGG | + | chr6_4:85150823-85150842 | Msa1001370:intron | 40.0% | |
TCACTGTATGCTTGGATTGA+CGG | + | chr6_4:85150831-85150850 | Msa1001370:intron | 40.0% | |
ATTTGGTCTGTCTGAATTGG+CGG | - | chr6_4:85150950-85150969 | None:intergenic | 40.0% | |
TTTGCCTCTGAACTCAATAC+TGG | + | chr6_4:85151094-85151113 | Msa1001370:CDS | 40.0% | |
! | CTAACCAGTATTGAGTTCAG+AGG | - | chr6_4:85151101-85151120 | None:intergenic | 40.0% |
CTGTGATTACACTGCAGATA+TGG | - | chr6_4:85151146-85151165 | None:intergenic | 40.0% | |
! | GGCAAGGCTTTTTATGTTCT+TGG | - | chr6_4:85151425-85151444 | None:intergenic | 40.0% |
TAATCAATCTGGTCAAGGCA+AGG | - | chr6_4:85151441-85151460 | None:intergenic | 40.0% | |
! | ATGTGGCTGTAGAGTATCTT+AGG | + | chr6_4:85151467-85151486 | Msa1001370:CDS | 40.0% |
TTCAAACCAGAATGGTATCG+AGG | + | chr6_4:85151678-85151697 | Msa1001370:CDS | 40.0% | |
! | CATTTTCCTCGATACCATTC+TGG | - | chr6_4:85151687-85151706 | None:intergenic | 40.0% |
! | AATGGTATCGAGGAAAATGC+CGG | + | chr6_4:85151688-85151707 | Msa1001370:CDS | 40.0% |
GGTTTCAGAAATGGTACTCA+AGG | + | chr6_4:85151776-85151795 | Msa1001370:intron | 40.0% | |
AAATGGTACTCAAGGAAGCA+CGG | + | chr6_4:85151784-85151803 | Msa1001370:intron | 40.0% | |
CGTCACTAATCAATGTGCTT+TGG | - | chr6_4:85152032-85152051 | None:intergenic | 40.0% | |
!! | CTTTTGAGTAAGGTCGTACT+TGG | - | chr6_4:85152145-85152164 | None:intergenic | 40.0% |
!! | CAGGAACAGACTTTTGAGTA+AGG | - | chr6_4:85152155-85152174 | None:intergenic | 40.0% |
CAAAAGTCTGTTCCTGTCAA+AGG | + | chr6_4:85152159-85152178 | Msa1001370:CDS | 40.0% | |
! | CTTTGCAATTACATGATGGG+AGG | + | chr6_4:85152296-85152315 | Msa1001370:three_prime_UTR | 40.0% |
! | ATTACATGATGGGAGGTCTT+AGG | + | chr6_4:85152303-85152322 | Msa1001370:three_prime_UTR | 40.0% |
! | TTACATGATGGGAGGTCTTA+GGG | + | chr6_4:85152304-85152323 | Msa1001370:three_prime_UTR | 40.0% |
GCACTAAATCATCAAGCACA+GGG | - | chr6_4:85152382-85152401 | None:intergenic | 40.0% | |
TGCACTAAATCATCAAGCAC+AGG | - | chr6_4:85152383-85152402 | None:intergenic | 40.0% | |
GAACAAAGACGGAGATACGA+GGG | - | chr6_4:85149539-85149558 | None:intergenic | 45.0% | |
AGAACAAAGACGGAGATACG+AGG | - | chr6_4:85149540-85149559 | None:intergenic | 45.0% | |
!! | GCATGGTGTTTTTCAGCTTC+AGG | - | chr6_4:85149608-85149627 | None:intergenic | 45.0% |
GCTTGTTCAGCTTCTGTTAG+TGG | + | chr6_4:85149834-85149853 | Msa1001370:CDS | 45.0% | |
! | CGACGATGATGATGCAAATG+AGG | + | chr6_4:85150082-85150101 | Msa1001370:CDS | 45.0% |
!! | TTTGGCTGGTGCTGTTATGA+TGG | + | chr6_4:85150181-85150200 | Msa1001370:CDS | 45.0% |
GGGAATGGAAAAGGGTGAAT+TGG | + | chr6_4:85150241-85150260 | Msa1001370:CDS | 45.0% | |
TGCCTTAAGAGTTGGAGTGT+TGG | + | chr6_4:85150269-85150288 | Msa1001370:CDS | 45.0% | |
AGCCAACACTCCAACTCTTA+AGG | - | chr6_4:85150274-85150293 | None:intergenic | 45.0% | |
TGTACGTCATCGACACACAT+CGG | + | chr6_4:85150497-85150516 | Msa1001370:intron | 45.0% | |
GGTCTTAATACGTGTGGAGT+AGG | - | chr6_4:85150703-85150722 | None:intergenic | 45.0% | |
TATCGATCCATGACGTGTAC+CGG | + | chr6_4:85150743-85150762 | Msa1001370:intron | 45.0% | |
! | TGGAGCATCACAAAACACCA+CGG | - | chr6_4:85150874-85150893 | None:intergenic | 45.0% |
GTCTGAATTGGCGGTGAAAT+TGG | - | chr6_4:85150941-85150960 | None:intergenic | 45.0% | |
ACTTATAAGTGCTCTCGGTG+AGG | - | chr6_4:85151728-85151747 | None:intergenic | 45.0% | |
TTGCTGCACCTTGAGAATCT+AGG | + | chr6_4:85151838-85151857 | Msa1001370:CDS | 45.0% | |
CGTTGACAATGTTGGAGAAG+AGG | + | chr6_4:85151984-85152003 | Msa1001370:CDS | 45.0% | |
GTTGGAGAAGAGGAAAATGC+AGG | + | chr6_4:85151994-85152013 | Msa1001370:CDS | 45.0% | |
AAGTCTGTTCCTGTCAAAGG+TGG | + | chr6_4:85152162-85152181 | Msa1001370:CDS | 45.0% | |
AGTCTGTTCCTGTCAAAGGT+GGG | + | chr6_4:85152163-85152182 | Msa1001370:CDS | 45.0% | |
AAGTGATGAGAGTGAAGTGC+AGG | + | chr6_4:85152209-85152228 | Msa1001370:CDS | 45.0% | |
! | TACATGATGGGAGGTCTTAG+GGG | + | chr6_4:85152305-85152324 | Msa1001370:three_prime_UTR | 45.0% |
! | AGACGGAGATACGAGGGTTT+TGG | - | chr6_4:85149533-85149552 | None:intergenic | 50.0% |
ACGTGTACCGGATATGCCTT+TGG | + | chr6_4:85150755-85150774 | Msa1001370:intron | 50.0% | |
TATCGAGGAAAATGCCGGCA+AGG | + | chr6_4:85151693-85151712 | Msa1001370:CDS | 50.0% | |
GAAAATGCCGGCAAGGCAAA+TGG | + | chr6_4:85151700-85151719 | Msa1001370:CDS | 50.0% | |
TGAGGATCCATTTGCCTTGC+CGG | - | chr6_4:85151710-85151729 | None:intergenic | 50.0% | |
CATTTCACAACTGGAGCCAC+CGG | + | chr6_4:85151915-85151934 | Msa1001370:CDS | 50.0% | |
! | CCATCTAAAGTACCAGCAGC+CGG | - | chr6_4:85151937-85151956 | None:intergenic | 50.0% |
AGAAGAGGAAAATGCAGGCG+AGG | + | chr6_4:85151999-85152018 | Msa1001370:CDS | 50.0% | |
GGGCAGTGAGAAGTTACATG+TGG | + | chr6_4:85152325-85152344 | Msa1001370:three_prime_UTR | 50.0% | |
CTTTGGATGTGTCGTGTCGG+TGG | + | chr6_4:85150474-85150493 | Msa1001370:intron | 55.0% | |
GGCATATCCGGTACACGTCA+TGG | - | chr6_4:85150753-85150772 | None:intergenic | 55.0% | |
! | TCTAAAGTACCAGCAGCCGG+TGG | - | chr6_4:85151934-85151953 | None:intergenic | 55.0% |
CCGGCTGCTGGTACTTTAGA+TGG | + | chr6_4:85151934-85151953 | Msa1001370:CDS | 55.0% | |
AGAGGAAAATGCAGGCGAGG+AGG | + | chr6_4:85152002-85152021 | Msa1001370:CDS | 55.0% | |
GCTGAAGTCCCACCTTTGAC+AGG | - | chr6_4:85152174-85152193 | None:intergenic | 55.0% | |
! | CAACTGGAGCCACCGGCTGC+TGG | + | chr6_4:85151922-85151941 | Msa1001370:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 85149499 | 85152471 | 85149499 | ID=Msa1001370;Name=Msa1001370 |
chr6_4 | mRNA | 85149499 | 85152471 | 85149499 | ID=Msa1001370-mRNA-1;Parent=Msa1001370;Name=Msa1001370-mRNA-1;_AED=0.30;_eAED=0.30;_QI=62|1|1|1|1|1|5|214|513 |
chr6_4 | exon | 85149499 | 85150326 | 85149499 | ID=Msa1001370-mRNA-1:exon:16647;Parent=Msa1001370-mRNA-1 |
chr6_4 | exon | 85151063 | 85151115 | 85151063 | ID=Msa1001370-mRNA-1:exon:16648;Parent=Msa1001370-mRNA-1 |
chr6_4 | exon | 85151340 | 85151488 | 85151340 | ID=Msa1001370-mRNA-1:exon:16649;Parent=Msa1001370-mRNA-1 |
chr6_4 | exon | 85151597 | 85151745 | 85151597 | ID=Msa1001370-mRNA-1:exon:16650;Parent=Msa1001370-mRNA-1 |
chr6_4 | exon | 85151833 | 85152471 | 85151833 | ID=Msa1001370-mRNA-1:exon:16651;Parent=Msa1001370-mRNA-1 |
chr6_4 | five_prime_UTR | 85149499 | 85149560 | 85149499 | ID=Msa1001370-mRNA-1:five_prime_utr;Parent=Msa1001370-mRNA-1 |
chr6_4 | CDS | 85149561 | 85150326 | 85149561 | ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1 |
chr6_4 | CDS | 85151063 | 85151115 | 85151063 | ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1 |
chr6_4 | CDS | 85151340 | 85151488 | 85151340 | ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1 |
chr6_4 | CDS | 85151597 | 85151745 | 85151597 | ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1 |
chr6_4 | CDS | 85151833 | 85152257 | 85151833 | ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1 |
chr6_4 | three_prime_UTR | 85152258 | 85152471 | 85152258 | ID=Msa1001370-mRNA-1:three_prime_utr;Parent=Msa1001370-mRNA-1 |
Gene Sequence |
Protein sequence |