AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1001370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001370 MtrunA17_Chr6g0488071 91.423 513 43 1 1 513 1 512 0.0 879
Msa1001370 MtrunA17_Chr6g0488141 77.821 514 44 4 1 513 1 445 0.0 707
Msa1001370 MtrunA17_Chr6g0488291 90.545 275 24 1 1 273 1 275 4.17e-163 464
Msa1001370 MtrunA17_Chr1g0151731 32.673 404 241 8 14 397 14 406 4.15e-55 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001370 AT5G11780.1 29.360 453 255 14 53 478 57 471 3.02e-43 160

Find 104 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATGGAAATCACAAATT+TGG 0.169385 6_4:+85149557 Msa1001370:exon
TAAGCATCTGAATCTGAATT+TGG 0.212727 6_4:-85152234 None:intergenic
AGACTTTCATGTTGGTTATT+TGG 0.219723 6_4:+85150163 Msa1001370:CDS
GTCTATTCTGCAATCAAATT+TGG 0.229642 6_4:+85149738 Msa1001370:CDS
GGTTGCAGAAAATCTCTTAA+AGG 0.230767 6_4:+85149759 Msa1001370:CDS
AGACAGGCTGTAACAAATTT+TGG 0.231771 6_4:+85152403 Msa1001370:three_prime_UTR
TGAATGATTTGGCTCGTCTT+TGG 0.239540 6_4:+85150048 Msa1001370:CDS
AGAAAATTCAGGGGATTCTT+TGG 0.242463 6_4:-85149649 None:intergenic
ATTACATGATGGGAGGTCTT+AGG 0.259763 6_4:+85152303 Msa1001370:three_prime_UTR
GAATGATTTGGCTCGTCTTT+GGG 0.283844 6_4:+85150049 Msa1001370:CDS
TGAGGATCCATTTGCCTTGC+CGG 0.285447 6_4:-85151707 None:intergenic
GCTTGTTCAGCTTCTGTTAG+TGG 0.286482 6_4:+85149834 Msa1001370:CDS
TCTTTGGTTGATATGATTCT+TGG 0.304559 6_4:+85149963 Msa1001370:CDS
AATTATTTGTGAAGGTAAAT+TGG 0.321645 6_4:-85151647 None:intergenic
ACCTTCACAAATAATTAAAC+TGG 0.339310 6_4:+85151654 Msa1001370:CDS
TATGATACATAGTGTGGTTA+AGG 0.342249 6_4:+85149893 Msa1001370:CDS
ATCAAAAGATGGGTCAAGTT+TGG 0.348170 6_4:-85149706 None:intergenic
AGACGGAGATACGAGGGTTT+TGG 0.348813 6_4:-85149530 None:intergenic
ATGTGGCTGTAGAGTATCTT+AGG 0.354901 6_4:+85151467 Msa1001370:CDS
TCAATGGAATGAGAAAATTC+AGG 0.355310 6_4:-85149660 None:intergenic
TGAAGAGAAAGATTTGGATT+TGG 0.356237 6_4:+85150016 Msa1001370:CDS
AATTTCTGAAGAGAAAGATT+TGG 0.357567 6_4:+85150010 Msa1001370:CDS
AGGAACAGTTTGAATTGAAA+AGG 0.358615 6_4:+85149913 Msa1001370:CDS
AATGAAGGAAGTGAAATCTT+TGG 0.369502 6_4:+85149947 Msa1001370:CDS
GGGAATGGAAAAGGGTGAAT+TGG 0.370113 6_4:+85150241 Msa1001370:CDS
TTTATTTGATGCTGTACTAT+TGG 0.385927 6_4:+85151372 Msa1001370:CDS
TTTGCCTCTGAACTCAATAC+TGG 0.387425 6_4:+85151094 Msa1001370:CDS
CCGGCTGCTGGTACTTTAGA+TGG 0.394377 6_4:+85151934 Msa1001370:CDS
CTTTGGTTGATATGATTCTT+GGG 0.402702 6_4:+85149964 Msa1001370:CDS
GAAAATTCAGGGGATTCTTT+GGG 0.405005 6_4:-85149648 None:intergenic
ATGTCTTGACATTTCACAAC+TGG 0.411923 6_4:+85151906 Msa1001370:CDS
GGAACAGTTTGAATTGAAAA+GGG 0.418531 6_4:+85149914 Msa1001370:CDS
TTACATGATGGGAGGTCTTA+GGG 0.423417 6_4:+85152304 Msa1001370:three_prime_UTR
GAAAATGCCGGCAAGGCAAA+TGG 0.429113 6_4:+85151700 Msa1001370:CDS
TATCTCCGTCTTTGTTCTCA+TGG 0.439243 6_4:+85149542 Msa1001370:exon
TTTCATGTTGGTTATTTGGC+TGG 0.443028 6_4:+85150167 Msa1001370:CDS
CACATGTGTAATAATCAATC+TGG 0.443588 6_4:-85151449 None:intergenic
CATGACAAAATTTAAATATG+AGG 0.444705 6_4:-85152348 None:intergenic
CAGTTCATGTGATGCATCAA+TGG 0.445537 6_4:-85149676 None:intergenic
GATGTTTGTGGTTGGATTTG+TGG 0.446199 6_4:+85150137 Msa1001370:CDS
TGAGTAGTGATGTTTGTGGT+TGG 0.458478 6_4:+85150129 Msa1001370:CDS
CAACTGGAGCCACCGGCTGC+TGG 0.468422 6_4:+85151922 Msa1001370:CDS
AGCCAACACTCCAACTCTTA+AGG 0.469350 6_4:-85150271 None:intergenic
TTTGGCTGGTGCTGTTATGA+TGG 0.474617 6_4:+85150181 Msa1001370:CDS
TGGAAATGTGCCTTAAGAGT+TGG 0.477292 6_4:+85150261 Msa1001370:CDS
CATGCTTTGCAATTACATGA+TGG 0.478224 6_4:+85152292 Msa1001370:three_prime_UTR
AAGGGAGAAGAAAGTAATGA+AGG 0.479840 6_4:+85149932 Msa1001370:CDS
TACAATCAGAGGTTCTTATG+AGG 0.479898 6_4:+85151054 Msa1001370:intron
TAGAATCATCTCTTATAGTA+AGG 0.480176 6_4:+85151612 Msa1001370:CDS
TTTGATATGGGAATGGAAAA+GGG 0.481409 6_4:+85150233 Msa1001370:CDS
CGTCACTAATCAATGTGCTT+TGG 0.488336 6_4:-85152029 None:intergenic
TTGCTGCACCTTGAGAATCT+AGG 0.490715 6_4:+85151838 Msa1001370:CDS
ACCAGTTTAATTATTTGTGA+AGG 0.491766 6_4:-85151655 None:intergenic
CGACGATGATGATGCAAATG+AGG 0.494007 6_4:+85150082 Msa1001370:CDS
CGTTGACAATGTTGGAGAAG+AGG 0.496608 6_4:+85151984 Msa1001370:CDS
ATTTGATGCTGTACTATTGG+TGG 0.496812 6_4:+85151375 Msa1001370:CDS
ACCCACATCACATCAAAAGA+TGG 0.500998 6_4:-85149717 None:intergenic
CAATGGAATGAGAAAATTCA+GGG 0.509336 6_4:-85149659 None:intergenic
AGGTAAAAGCAATGGAAAGA+AGG 0.510015 6_4:+85152110 Msa1001370:CDS
CAAAAGTCTGTTCCTGTCAA+AGG 0.510853 6_4:+85152159 Msa1001370:CDS
TACTTACTTATAAGTGCTCT+CGG 0.514235 6_4:-85151730 None:intergenic
ACAAATTTGGTTCCTCATGT+TGG 0.514732 6_4:+85149570 Msa1001370:CDS
GCTGAAGTCCCACCTTTGAC+AGG 0.517501 6_4:-85152171 None:intergenic
TGCACTAAATCATCAAGCAC+AGG 0.519690 6_4:-85152380 None:intergenic
AACGAAAGTCGAAAACGAAA+AGG 0.522293 6_4:+85152090 Msa1001370:CDS
ATGCTTTGCAATTACATGAT+GGG 0.526795 6_4:+85152293 Msa1001370:three_prime_UTR
CATTTCACAACTGGAGCCAC+CGG 0.534822 6_4:+85151915 Msa1001370:CDS
CTTGTGAGTAGTGATGTTTG+TGG 0.538129 6_4:+85150125 Msa1001370:CDS
AAGTGATGAGAGTGAAGTGC+AGG 0.542405 6_4:+85152209 Msa1001370:CDS
AAACGAAAAGGTAAAAGCAA+TGG 0.543735 6_4:+85152102 Msa1001370:CDS
AAACTGGTTTCAAACCAGAA+TGG 0.551672 6_4:+85151670 Msa1001370:CDS
TGTAATAATCAATCTGGTCA+AGG 0.552695 6_4:-85151443 None:intergenic
AAGTCTGTTCCTGTCAAAGG+TGG 0.555882 6_4:+85152162 Msa1001370:CDS
TTGATGATTTAGTGCAAGAC+AGG 0.559554 6_4:+85152387 Msa1001370:three_prime_UTR
GACGATGATGATGCAAATGA+GGG 0.566547 6_4:+85150083 Msa1001370:CDS
TTCTGATAGAATTTCTTGCA+TGG 0.570840 6_4:-85149622 None:intergenic
AATGGTATCGAGGAAAATGC+CGG 0.571295 6_4:+85151688 Msa1001370:CDS
TGTGGTATAGACTTTCATGT+TGG 0.585968 6_4:+85150155 Msa1001370:CDS
TAATCAATCTGGTCAAGGCA+AGG 0.590904 6_4:-85151438 None:intergenic
CCCACATCACATCAAAAGAT+GGG 0.595174 6_4:-85149716 None:intergenic
GTTGGAGAAGAGGAAAATGC+AGG 0.597539 6_4:+85151994 Msa1001370:CDS
CTCTAATTCCTAGATTCTCA+AGG 0.598093 6_4:-85151846 None:intergenic
CCATCTAAAGTACCAGCAGC+CGG 0.601460 6_4:-85151934 None:intergenic
TGCCTTAAGAGTTGGAGTGT+TGG 0.602128 6_4:+85150269 Msa1001370:CDS
GATTTCCATGAGAACAAAGA+CGG 0.608393 6_4:-85149547 None:intergenic
AGTCTGTTCCTGTCAAAGGT+GGG 0.608701 6_4:+85152163 Msa1001370:CDS
TACATGATGGGAGGTCTTAG+GGG 0.617121 6_4:+85152305 Msa1001370:three_prime_UTR
AGAAGAGGAAAATGCAGGCG+AGG 0.620669 6_4:+85151999 Msa1001370:CDS
AGAGGAAAATGCAGGCGAGG+AGG 0.627324 6_4:+85152002 Msa1001370:CDS
GATGGTAAGATAACAGATGA+CGG 0.628077 6_4:+85151952 Msa1001370:CDS
TATCGAGGAAAATGCCGGCA+AGG 0.638104 6_4:+85151693 Msa1001370:CDS
CTTTGCAATTACATGATGGG+AGG 0.641020 6_4:+85152296 Msa1001370:three_prime_UTR
CAAACATCACTACTCACAAG+AGG 0.646663 6_4:-85150122 None:intergenic
TTCAAACCAGAATGGTATCG+AGG 0.654461 6_4:+85151678 Msa1001370:CDS
CAGATTGATTATTACACATG+TGG 0.657009 6_4:+85151450 Msa1001370:CDS
AGAACAAAGACGGAGATACG+AGG 0.665893 6_4:-85149537 None:intergenic
CTAACCAGTATTGAGTTCAG+AGG 0.672560 6_4:-85151098 None:intergenic
ACTTATAAGTGCTCTCGGTG+AGG 0.679393 6_4:-85151725 None:intergenic
GAACAAAGACGGAGATACGA+GGG 0.683687 6_4:-85149536 None:intergenic
GCACTAAATCATCAAGCACA+GGG 0.684590 6_4:-85152379 None:intergenic
AATGGAATGAGAAAATTCAG+GGG 0.687354 6_4:-85149658 None:intergenic
GGGCAGTGAGAAGTTACATG+TGG 0.701511 6_4:+85152325 Msa1001370:three_prime_UTR
TCTAAAGTACCAGCAGCCGG+TGG 0.704066 6_4:-85151931 None:intergenic
ACGATGATGATGCAAATGAG+GGG 0.709607 6_4:+85150084 Msa1001370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAGTATGTTTAATT+TGG - chr6_4:85150967-85150986 None:intergenic 10.0%
!! ACTAATATCCATAAAAATAA+TGG - chr6_4:85151207-85151226 None:intergenic 15.0%
!!! TTGTGTTTGTTTTTTGATAT+GGG + chr6_4:85150221-85150240 Msa1001370:CDS 20.0%
!!! TTTAAGGTAAAATATGTAGT+AGG - chr6_4:85150657-85150676 None:intergenic 20.0%
!! ACATTATCTCAAATTATCAT+CGG - chr6_4:85150724-85150743 None:intergenic 20.0%
!!! TTAGTTATTGACTTATTGTA+TGG + chr6_4:85151499-85151518 Msa1001370:intron 20.0%
!! AATTATTTGTGAAGGTAAAT+TGG - chr6_4:85151650-85151669 None:intergenic 20.0%
!!! TTTTGTTCTTCTAATATCTA+TGG + chr6_4:85151755-85151774 Msa1001370:intron 20.0%
!! TTTCATAATTCATTCTAGAT+TGG + chr6_4:85151815-85151834 Msa1001370:intron 20.0%
!! CATGACAAAATTTAAATATG+AGG - chr6_4:85152351-85152370 None:intergenic 20.0%
! CTATGTATCATAAAAACAAC+AGG - chr6_4:85149885-85149904 None:intergenic 25.0%
!!! TGTTTTTATGATACATAGTG+TGG + chr6_4:85149887-85149906 Msa1001370:CDS 25.0%
!! AATTTCTGAAGAGAAAGATT+TGG + chr6_4:85150010-85150029 Msa1001370:CDS 25.0%
!!! GTTGTGTTTGTTTTTTGATA+TGG + chr6_4:85150220-85150239 Msa1001370:CDS 25.0%
!!! TTTGTTTTTTGATATGGGAA+TGG + chr6_4:85150226-85150245 Msa1001370:CDS 25.0%
!!! TTTCAGAATGTGTACTTTTT+GGG + chr6_4:85150305-85150324 Msa1001370:CDS 25.0%
!! TCAATGTTTCATAGGTTTTA+GGG - chr6_4:85150390-85150409 None:intergenic 25.0%
!! ATCAATGTTTCATAGGTTTT+AGG - chr6_4:85150391-85150410 None:intergenic 25.0%
! GTTGAATGTAACTATATCTT+TGG + chr6_4:85150457-85150476 Msa1001370:intron 25.0%
!! CATAGCTTAAAACTTTTATC+TGG + chr6_4:85150558-85150577 Msa1001370:intron 25.0%
!! TAAAACTTTTATCTGGATGA+TGG + chr6_4:85150565-85150584 Msa1001370:intron 25.0%
!!! ATCAGTGTTTCATAGTTTTA+AGG - chr6_4:85150673-85150692 None:intergenic 25.0%
!! ACATAGCTTAACTTTTTATC+TGG + chr6_4:85150795-85150814 Msa1001370:intron 25.0%
!! TTAACTTTTTATCTGGATGA+GGG + chr6_4:85150802-85150821 Msa1001370:intron 25.0%
!! TTTTGCTAAAAGCTATACTT+TGG - chr6_4:85150894-85150913 None:intergenic 25.0%
!! ATGTTGTTCTTTGTTTAATG+TGG + chr6_4:85151019-85151038 Msa1001370:intron 25.0%
!! TTTATCTTTTGTACAATCAG+AGG + chr6_4:85151043-85151062 Msa1001370:intron 25.0%
! CAGATATGGAATAAATAACA+AGG - chr6_4:85151132-85151151 None:intergenic 25.0%
!! TTAGACATTTTTGCAATACA+CGG - chr6_4:85151182-85151201 None:intergenic 25.0%
!!! GTCTAACACCATTATTTTTA+TGG + chr6_4:85151196-85151215 Msa1001370:intron 25.0%
! TTTATTTGATGCTGTACTAT+TGG + chr6_4:85151372-85151391 Msa1001370:CDS 25.0%
! TGAAGCATAATTTCTGTTAA+TGG + chr6_4:85151564-85151583 Msa1001370:intron 25.0%
! TAGAATCATCTCTTATAGTA+AGG + chr6_4:85151612-85151631 Msa1001370:CDS 25.0%
! ACCTTCACAAATAATTAAAC+TGG + chr6_4:85151654-85151673 Msa1001370:CDS 25.0%
! ACCAGTTTAATTATTTGTGA+AGG - chr6_4:85151658-85151677 None:intergenic 25.0%
! AATATCTATGGTTTCAGAAA+TGG + chr6_4:85151767-85151786 Msa1001370:intron 25.0%
TCTCATGGAAATCACAAATT+TGG + chr6_4:85149557-85149576 Msa1001370:exon 30.0%
TTCTGATAGAATTTCTTGCA+TGG - chr6_4:85149625-85149644 None:intergenic 30.0%
AATGGAATGAGAAAATTCAG+GGG - chr6_4:85149661-85149680 None:intergenic 30.0%
CAATGGAATGAGAAAATTCA+GGG - chr6_4:85149662-85149681 None:intergenic 30.0%
TCAATGGAATGAGAAAATTC+AGG - chr6_4:85149663-85149682 None:intergenic 30.0%
GTCTATTCTGCAATCAAATT+TGG + chr6_4:85149738-85149757 Msa1001370:CDS 30.0%
TATGATACATAGTGTGGTTA+AGG + chr6_4:85149893-85149912 Msa1001370:CDS 30.0%
AGGAACAGTTTGAATTGAAA+AGG + chr6_4:85149913-85149932 Msa1001370:CDS 30.0%
GGAACAGTTTGAATTGAAAA+GGG + chr6_4:85149914-85149933 Msa1001370:CDS 30.0%
AATGAAGGAAGTGAAATCTT+TGG + chr6_4:85149947-85149966 Msa1001370:CDS 30.0%
! TCTTTGGTTGATATGATTCT+TGG + chr6_4:85149963-85149982 Msa1001370:CDS 30.0%
! CTTTGGTTGATATGATTCTT+GGG + chr6_4:85149964-85149983 Msa1001370:CDS 30.0%
TGAAGAGAAAGATTTGGATT+TGG + chr6_4:85150016-85150035 Msa1001370:CDS 30.0%
!! GGTTTTGTCTTTGAATGATT+TGG + chr6_4:85150037-85150056 Msa1001370:CDS 30.0%
! AGACTTTCATGTTGGTTATT+TGG + chr6_4:85150163-85150182 Msa1001370:CDS 30.0%
! TTTTGATATGGGAATGGAAA+AGG + chr6_4:85150232-85150251 Msa1001370:CDS 30.0%
TTTGATATGGGAATGGAAAA+GGG + chr6_4:85150233-85150252 Msa1001370:CDS 30.0%
! CTTTCAGAATGTGTACTTTT+TGG + chr6_4:85150304-85150323 Msa1001370:CDS 30.0%
!!! GGTGAGGTTTATTTTGTTTT+TGG + chr6_4:85150326-85150345 Msa1001370:intron 30.0%
TGTCAGTATCAATGTTTCAT+AGG - chr6_4:85150398-85150417 None:intergenic 30.0%
CTTCACATTGAATGTACATT+CGG - chr6_4:85150527-85150546 None:intergenic 30.0%
GTACATTCAATGTGAAGTAA+TGG + chr6_4:85150530-85150549 Msa1001370:intron 30.0%
! ATTCCATTCAATGCACTTTT+TGG + chr6_4:85150592-85150611 Msa1001370:intron 30.0%
!! TTCCATTCAATGCACTTTTT+GGG + chr6_4:85150593-85150612 Msa1001370:intron 30.0%
! CTTAACTTTTTATCTGGATG+AGG + chr6_4:85150801-85150820 Msa1001370:intron 30.0%
! TAGCTTTTAGCAAAATCACA+AGG + chr6_4:85150899-85150918 Msa1001370:intron 30.0%
! TTAATTTGGTCTGTCTGAAT+TGG - chr6_4:85150953-85150972 None:intergenic 30.0%
! TAGACATTTTTGCAATACAC+GGG - chr6_4:85151181-85151200 None:intergenic 30.0%
! CCAAATGTTAACAGCTTTAA+TGG - chr6_4:85151306-85151325 None:intergenic 30.0%
CCATTAAAGCTGTTAACATT+TGG + chr6_4:85151303-85151322 Msa1001370:intron 30.0%
TGTAATAATCAATCTGGTCA+AGG - chr6_4:85151446-85151465 None:intergenic 30.0%
CACATGTGTAATAATCAATC+TGG - chr6_4:85151452-85151471 None:intergenic 30.0%
CAGATTGATTATTACACATG+TGG + chr6_4:85151450-85151469 Msa1001370:CDS 30.0%
TTCTGTTAATGGTTTGATGT+AGG + chr6_4:85151575-85151594 Msa1001370:intron 30.0%
TCTGTTAATGGTTTGATGTA+GGG + chr6_4:85151576-85151595 Msa1001370:intron 30.0%
TACTTACTTATAAGTGCTCT+CGG - chr6_4:85151733-85151752 None:intergenic 30.0%
! TCTAGGAATTAGAGTTTTTG+AGG + chr6_4:85151855-85151874 Msa1001370:CDS 30.0%
CAACATTGTCAACGTAAAAA+AGG - chr6_4:85151978-85151997 None:intergenic 30.0%
!!! CTTTTTTACGTTGACAATGT+TGG + chr6_4:85151976-85151995 Msa1001370:CDS 30.0%
AAACGAAAAGGTAAAAGCAA+TGG + chr6_4:85152102-85152121 Msa1001370:CDS 30.0%
TAAGCATCTGAATCTGAATT+TGG - chr6_4:85152237-85152256 None:intergenic 30.0%
ATGCTTTGCAATTACATGAT+GGG + chr6_4:85152293-85152312 Msa1001370:three_prime_UTR 30.0%
!!! ATACGAGGGTTTTGGTTTTT+TGG - chr6_4:85149525-85149544 None:intergenic 35.0%
GATTTCCATGAGAACAAAGA+CGG - chr6_4:85149550-85149569 None:intergenic 35.0%
! ACAAATTTGGTTCCTCATGT+TGG + chr6_4:85149570-85149589 Msa1001370:CDS 35.0%
GAAAATTCAGGGGATTCTTT+GGG - chr6_4:85149651-85149670 None:intergenic 35.0%
AGAAAATTCAGGGGATTCTT+TGG - chr6_4:85149652-85149671 None:intergenic 35.0%
ATCAAAAGATGGGTCAAGTT+TGG - chr6_4:85149709-85149728 None:intergenic 35.0%
GGTTGCAGAAAATCTCTTAA+AGG + chr6_4:85149759-85149778 Msa1001370:CDS 35.0%
AAGGGAGAAGAAAGTAATGA+AGG + chr6_4:85149932-85149951 Msa1001370:CDS 35.0%
TGTGGTATAGACTTTCATGT+TGG + chr6_4:85150155-85150174 Msa1001370:CDS 35.0%
! TTTCATGTTGGTTATTTGGC+TGG + chr6_4:85150167-85150186 Msa1001370:CDS 35.0%
ATACCAACAATTCACACCAA+AGG - chr6_4:85150774-85150793 None:intergenic 35.0%
!! TGAGTTTGTTAAAATCACCG+TGG + chr6_4:85150854-85150873 Msa1001370:intron 35.0%
TACAATCAGAGGTTCTTATG+AGG + chr6_4:85151054-85151073 Msa1001370:intron 35.0%
ATTTGATGCTGTACTATTGG+TGG + chr6_4:85151375-85151394 Msa1001370:CDS 35.0%
! AAACTGGTTTCAAACCAGAA+TGG + chr6_4:85151670-85151689 Msa1001370:CDS 35.0%
CTCTAATTCCTAGATTCTCA+AGG - chr6_4:85151849-85151868 None:intergenic 35.0%
ATGTCTTGACATTTCACAAC+TGG + chr6_4:85151906-85151925 Msa1001370:CDS 35.0%
GATGGTAAGATAACAGATGA+CGG + chr6_4:85151952-85151971 Msa1001370:CDS 35.0%
AACGAAAGTCGAAAACGAAA+AGG + chr6_4:85152090-85152109 Msa1001370:CDS 35.0%
AGGTAAAAGCAATGGAAAGA+AGG + chr6_4:85152110-85152129 Msa1001370:CDS 35.0%
CATGCTTTGCAATTACATGA+TGG + chr6_4:85152292-85152311 Msa1001370:three_prime_UTR 35.0%
! TTGATGATTTAGTGCAAGAC+AGG + chr6_4:85152387-85152406 Msa1001370:three_prime_UTR 35.0%
! AGACAGGCTGTAACAAATTT+TGG + chr6_4:85152403-85152422 Msa1001370:three_prime_UTR 35.0%
TATCTCCGTCTTTGTTCTCA+TGG + chr6_4:85149542-85149561 Msa1001370:exon 40.0%
! GTGTAGTTTTCACCAACATG+AGG - chr6_4:85149585-85149604 None:intergenic 40.0%
!! CATGGTGTTTTTCAGCTTCA+GGG - chr6_4:85149607-85149626 None:intergenic 40.0%
CAGTTCATGTGATGCATCAA+TGG - chr6_4:85149679-85149698 None:intergenic 40.0%
! ACCCATCTTTTGATGTGATG+TGG + chr6_4:85149715-85149734 Msa1001370:CDS 40.0%
CCCACATCACATCAAAAGAT+GGG - chr6_4:85149719-85149738 None:intergenic 40.0%
! CCCATCTTTTGATGTGATGT+GGG + chr6_4:85149716-85149735 Msa1001370:CDS 40.0%
ACCCACATCACATCAAAAGA+TGG - chr6_4:85149720-85149739 None:intergenic 40.0%
! TGAATGATTTGGCTCGTCTT+TGG + chr6_4:85150048-85150067 Msa1001370:CDS 40.0%
! GAATGATTTGGCTCGTCTTT+GGG + chr6_4:85150049-85150068 Msa1001370:CDS 40.0%
! GACGATGATGATGCAAATGA+GGG + chr6_4:85150083-85150102 Msa1001370:CDS 40.0%
! ACGATGATGATGCAAATGAG+GGG + chr6_4:85150084-85150103 Msa1001370:CDS 40.0%
CAAACATCACTACTCACAAG+AGG - chr6_4:85150125-85150144 None:intergenic 40.0%
CTTGTGAGTAGTGATGTTTG+TGG + chr6_4:85150125-85150144 Msa1001370:CDS 40.0%
TGAGTAGTGATGTTTGTGGT+TGG + chr6_4:85150129-85150148 Msa1001370:CDS 40.0%
GATGTTTGTGGTTGGATTTG+TGG + chr6_4:85150137-85150156 Msa1001370:CDS 40.0%
TGGAAATGTGCCTTAAGAGT+TGG + chr6_4:85150261-85150280 Msa1001370:CDS 40.0%
!!! GAATGTGTACTTTTTGGGTG+AGG + chr6_4:85150310-85150329 Msa1001370:intron 40.0%
TATCTTTGGATGTGTCGTGT+CGG + chr6_4:85150471-85150490 Msa1001370:intron 40.0%
! CACCCAAAAAGTGCATTGAA+TGG - chr6_4:85150598-85150617 None:intergenic 40.0%
!!! TTCAATGCACTTTTTGGGTG+AGG + chr6_4:85150598-85150617 Msa1001370:intron 40.0%
ATCATCGGTCTTAATACGTG+TGG - chr6_4:85150709-85150728 None:intergenic 40.0%
! ATTCACACCAAAGGCATATC+CGG - chr6_4:85150765-85150784 None:intergenic 40.0%
! ATGCCTTTGGTGTGAATTGT+TGG + chr6_4:85150768-85150787 Msa1001370:intron 40.0%
GGATGAATTCACTGTATGCT+TGG + chr6_4:85150823-85150842 Msa1001370:intron 40.0%
TCACTGTATGCTTGGATTGA+CGG + chr6_4:85150831-85150850 Msa1001370:intron 40.0%
ATTTGGTCTGTCTGAATTGG+CGG - chr6_4:85150950-85150969 None:intergenic 40.0%
TTTGCCTCTGAACTCAATAC+TGG + chr6_4:85151094-85151113 Msa1001370:CDS 40.0%
! CTAACCAGTATTGAGTTCAG+AGG - chr6_4:85151101-85151120 None:intergenic 40.0%
CTGTGATTACACTGCAGATA+TGG - chr6_4:85151146-85151165 None:intergenic 40.0%
! GGCAAGGCTTTTTATGTTCT+TGG - chr6_4:85151425-85151444 None:intergenic 40.0%
TAATCAATCTGGTCAAGGCA+AGG - chr6_4:85151441-85151460 None:intergenic 40.0%
! ATGTGGCTGTAGAGTATCTT+AGG + chr6_4:85151467-85151486 Msa1001370:CDS 40.0%
TTCAAACCAGAATGGTATCG+AGG + chr6_4:85151678-85151697 Msa1001370:CDS 40.0%
! CATTTTCCTCGATACCATTC+TGG - chr6_4:85151687-85151706 None:intergenic 40.0%
! AATGGTATCGAGGAAAATGC+CGG + chr6_4:85151688-85151707 Msa1001370:CDS 40.0%
GGTTTCAGAAATGGTACTCA+AGG + chr6_4:85151776-85151795 Msa1001370:intron 40.0%
AAATGGTACTCAAGGAAGCA+CGG + chr6_4:85151784-85151803 Msa1001370:intron 40.0%
CGTCACTAATCAATGTGCTT+TGG - chr6_4:85152032-85152051 None:intergenic 40.0%
!! CTTTTGAGTAAGGTCGTACT+TGG - chr6_4:85152145-85152164 None:intergenic 40.0%
!! CAGGAACAGACTTTTGAGTA+AGG - chr6_4:85152155-85152174 None:intergenic 40.0%
CAAAAGTCTGTTCCTGTCAA+AGG + chr6_4:85152159-85152178 Msa1001370:CDS 40.0%
! CTTTGCAATTACATGATGGG+AGG + chr6_4:85152296-85152315 Msa1001370:three_prime_UTR 40.0%
! ATTACATGATGGGAGGTCTT+AGG + chr6_4:85152303-85152322 Msa1001370:three_prime_UTR 40.0%
! TTACATGATGGGAGGTCTTA+GGG + chr6_4:85152304-85152323 Msa1001370:three_prime_UTR 40.0%
GCACTAAATCATCAAGCACA+GGG - chr6_4:85152382-85152401 None:intergenic 40.0%
TGCACTAAATCATCAAGCAC+AGG - chr6_4:85152383-85152402 None:intergenic 40.0%
GAACAAAGACGGAGATACGA+GGG - chr6_4:85149539-85149558 None:intergenic 45.0%
AGAACAAAGACGGAGATACG+AGG - chr6_4:85149540-85149559 None:intergenic 45.0%
!! GCATGGTGTTTTTCAGCTTC+AGG - chr6_4:85149608-85149627 None:intergenic 45.0%
GCTTGTTCAGCTTCTGTTAG+TGG + chr6_4:85149834-85149853 Msa1001370:CDS 45.0%
! CGACGATGATGATGCAAATG+AGG + chr6_4:85150082-85150101 Msa1001370:CDS 45.0%
!! TTTGGCTGGTGCTGTTATGA+TGG + chr6_4:85150181-85150200 Msa1001370:CDS 45.0%
GGGAATGGAAAAGGGTGAAT+TGG + chr6_4:85150241-85150260 Msa1001370:CDS 45.0%
TGCCTTAAGAGTTGGAGTGT+TGG + chr6_4:85150269-85150288 Msa1001370:CDS 45.0%
AGCCAACACTCCAACTCTTA+AGG - chr6_4:85150274-85150293 None:intergenic 45.0%
TGTACGTCATCGACACACAT+CGG + chr6_4:85150497-85150516 Msa1001370:intron 45.0%
GGTCTTAATACGTGTGGAGT+AGG - chr6_4:85150703-85150722 None:intergenic 45.0%
TATCGATCCATGACGTGTAC+CGG + chr6_4:85150743-85150762 Msa1001370:intron 45.0%
! TGGAGCATCACAAAACACCA+CGG - chr6_4:85150874-85150893 None:intergenic 45.0%
GTCTGAATTGGCGGTGAAAT+TGG - chr6_4:85150941-85150960 None:intergenic 45.0%
ACTTATAAGTGCTCTCGGTG+AGG - chr6_4:85151728-85151747 None:intergenic 45.0%
TTGCTGCACCTTGAGAATCT+AGG + chr6_4:85151838-85151857 Msa1001370:CDS 45.0%
CGTTGACAATGTTGGAGAAG+AGG + chr6_4:85151984-85152003 Msa1001370:CDS 45.0%
GTTGGAGAAGAGGAAAATGC+AGG + chr6_4:85151994-85152013 Msa1001370:CDS 45.0%
AAGTCTGTTCCTGTCAAAGG+TGG + chr6_4:85152162-85152181 Msa1001370:CDS 45.0%
AGTCTGTTCCTGTCAAAGGT+GGG + chr6_4:85152163-85152182 Msa1001370:CDS 45.0%
AAGTGATGAGAGTGAAGTGC+AGG + chr6_4:85152209-85152228 Msa1001370:CDS 45.0%
! TACATGATGGGAGGTCTTAG+GGG + chr6_4:85152305-85152324 Msa1001370:three_prime_UTR 45.0%
! AGACGGAGATACGAGGGTTT+TGG - chr6_4:85149533-85149552 None:intergenic 50.0%
ACGTGTACCGGATATGCCTT+TGG + chr6_4:85150755-85150774 Msa1001370:intron 50.0%
TATCGAGGAAAATGCCGGCA+AGG + chr6_4:85151693-85151712 Msa1001370:CDS 50.0%
GAAAATGCCGGCAAGGCAAA+TGG + chr6_4:85151700-85151719 Msa1001370:CDS 50.0%
TGAGGATCCATTTGCCTTGC+CGG - chr6_4:85151710-85151729 None:intergenic 50.0%
CATTTCACAACTGGAGCCAC+CGG + chr6_4:85151915-85151934 Msa1001370:CDS 50.0%
! CCATCTAAAGTACCAGCAGC+CGG - chr6_4:85151937-85151956 None:intergenic 50.0%
AGAAGAGGAAAATGCAGGCG+AGG + chr6_4:85151999-85152018 Msa1001370:CDS 50.0%
GGGCAGTGAGAAGTTACATG+TGG + chr6_4:85152325-85152344 Msa1001370:three_prime_UTR 50.0%
CTTTGGATGTGTCGTGTCGG+TGG + chr6_4:85150474-85150493 Msa1001370:intron 55.0%
GGCATATCCGGTACACGTCA+TGG - chr6_4:85150753-85150772 None:intergenic 55.0%
! TCTAAAGTACCAGCAGCCGG+TGG - chr6_4:85151934-85151953 None:intergenic 55.0%
CCGGCTGCTGGTACTTTAGA+TGG + chr6_4:85151934-85151953 Msa1001370:CDS 55.0%
AGAGGAAAATGCAGGCGAGG+AGG + chr6_4:85152002-85152021 Msa1001370:CDS 55.0%
GCTGAAGTCCCACCTTTGAC+AGG - chr6_4:85152174-85152193 None:intergenic 55.0%
! CAACTGGAGCCACCGGCTGC+TGG + chr6_4:85151922-85151941 Msa1001370:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 85149499 85152471 85149499 ID=Msa1001370;Name=Msa1001370
chr6_4 mRNA 85149499 85152471 85149499 ID=Msa1001370-mRNA-1;Parent=Msa1001370;Name=Msa1001370-mRNA-1;_AED=0.30;_eAED=0.30;_QI=62|1|1|1|1|1|5|214|513
chr6_4 exon 85149499 85150326 85149499 ID=Msa1001370-mRNA-1:exon:16647;Parent=Msa1001370-mRNA-1
chr6_4 exon 85151063 85151115 85151063 ID=Msa1001370-mRNA-1:exon:16648;Parent=Msa1001370-mRNA-1
chr6_4 exon 85151340 85151488 85151340 ID=Msa1001370-mRNA-1:exon:16649;Parent=Msa1001370-mRNA-1
chr6_4 exon 85151597 85151745 85151597 ID=Msa1001370-mRNA-1:exon:16650;Parent=Msa1001370-mRNA-1
chr6_4 exon 85151833 85152471 85151833 ID=Msa1001370-mRNA-1:exon:16651;Parent=Msa1001370-mRNA-1
chr6_4 five_prime_UTR 85149499 85149560 85149499 ID=Msa1001370-mRNA-1:five_prime_utr;Parent=Msa1001370-mRNA-1
chr6_4 CDS 85149561 85150326 85149561 ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1
chr6_4 CDS 85151063 85151115 85151063 ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1
chr6_4 CDS 85151340 85151488 85151340 ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1
chr6_4 CDS 85151597 85151745 85151597 ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1
chr6_4 CDS 85151833 85152257 85151833 ID=Msa1001370-mRNA-1:cds;Parent=Msa1001370-mRNA-1
chr6_4 three_prime_UTR 85152258 85152471 85152258 ID=Msa1001370-mRNA-1:three_prime_utr;Parent=Msa1001370-mRNA-1
Gene Sequence

>Msa1001370

ATGGAAATCACAAATTTGGTTCCTCATGTTGGTGAAAACTACACCCTGAAGCTGAAAAACACCATGCAAGAAATTCTATCAGAACTTCCCAAAGAATCCCCTGAATTTTCTCATTCCATTGATGCATCACATGAACTGATGCTAACCAAACTTGACCCATCTTTTGATGTGATGTGGGTCTATTCTGCAATCAAATTTGGTTGCAGAAAATCTCTTAAAGGTGATAACTTGCAACAAATTTCAGCTGCAAAAGCACTTTTTCAGCTGATTTCTGCTTGTTCAGCTTCTGTTAGTGGTTCAAAGAGTATTGCTTTACTTGCTCCTGTTGTTTTTATGATACATAGTGTGGTTAAGGAACAGTTTGAATTGAAAAGGGAGAAGAAAGTAATGAAGGAAGTGAAATCTTTGGTTGATATGATTCTTGGGTTTATGAGTATATGTTGTAGTAAAATTTCTGAAGAGAAAGATTTGGATTTGGTTTTGTCTTTGAATGATTTGGCTCGTCTTTGGGTCGTTGACGACGACGATGATGATGCAAATGAGGGGTTTGAAACTTTGTTGCCTCTTGTGAGTAGTGATGTTTGTGGTTGGATTTGTGGTATAGACTTTCATGTTGGTTATTTGGCTGGTGCTGTTATGATGGAAGTGTTTTTGCTTAAGTTGTGTTTGTTTTTTGATATGGGAATGGAAAAGGGTGAATTGGAAATGTGCCTTAAGAGTTGGAGTGTTGGCTCAATTTCTAGCTTTCAGAATGTGTACTTTTTGGAGGTTCTTATGAGGACAGCATTAGAGACATCTTTGCCTCTGAACTCAATACTGAAAGCTAAAGATGAATTTCTATTAAAGAAAGTTTTATTTGATGCTGTACTATTGGTGGAGTACTCTTTTATCTATGAAAATGCCAAGAACATAAAAAGCCTTGCCTTGACCAGATTGATTATTACACATGTGGCTGTAGAGTATCTTAGGGAATTTGATCAGAATAGAATCATCTCTTATAGTAAGGCATTTTCTTCTTCCAATTTACCTTCACAAATAATTAAACTGGTTTCAAACCAGAATGGTATCGAGGAAAATGCCGGCAAGGCAAATGGATCCTCACCGAGAGCACTTATAAATTGGTTGCTGCACCTTGAGAATCTAGGAATTAGAGTTTTTGAGGACGATACTTTGAAAAGTCATGCTACGTCATGTCTTGACATTTCACAACTGGAGCCACCGGCTGCTGGTACTTTAGATGGTAAGATAACAGATGACGGCCTTTTTTACGTTGACAATGTTGGAGAAGAGGAAAATGCAGGCGAGGAGGATGACCAAAGCACATTGATTAGTGACGCGTTTGTAGCAGCTGCGCAAACTATGAAGTCAAGTGATAACGAAAGTCGAAAACGAAAAGGTAAAAGCAATGGAAAGAAGGTTAAATTTGCCAAGTACGACCTTACTCAAAAGTCTGTTCCTGTCAAAGGTGGGACTTCAGCTTCAAATGATAGTTCAAGTGATGAGAGTGAAGTGCAGGATCCAAATTCAGATTCAGATGCTTAA

Protein sequence

>Msa1001370

MEITNLVPHVGENYTLKLKNTMQEILSELPKESPEFSHSIDASHELMLTKLDPSFDVMWVYSAIKFGCRKSLKGDNLQQISAAKALFQLISACSASVSGSKSIALLAPVVFMIHSVVKEQFELKREKKVMKEVKSLVDMILGFMSICCSKISEEKDLDLVLSLNDLARLWVVDDDDDDANEGFETLLPLVSSDVCGWICGIDFHVGYLAGAVMMEVFLLKLCLFFDMGMEKGELEMCLKSWSVGSISSFQNVYFLEVLMRTALETSLPLNSILKAKDEFLLKKVLFDAVLLVEYSFIYENAKNIKSLALTRLIITHVAVEYLREFDQNRIISYSKAFSSSNLPSQIIKLVSNQNGIEENAGKANGSSPRALINWLLHLENLGIRVFEDDTLKSHATSCLDISQLEPPAAGTLDGKITDDGLFYVDNVGEEENAGEEDDQSTLISDAFVAAAQTMKSSDNESRKRKGKSNGKKVKFAKYDLTQKSVPVKGGTSASNDSSSDESEVQDPNSDSDA*