Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0130970 | sp|Q6BDA0|ELF6_ARATH | 52.280 | 943 | 363 | 20 | 1 | 921 | 1 | 878 | 0.0 | 922 |
Msa0130970 | sp|Q6BDA0|ELF6_ARATH | 56.650 | 203 | 82 | 3 | 1282 | 1478 | 1137 | 1339 | 6.10e-66 | 249 |
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000550 | Msa0130970 | -0.815278 | 1.003397e-51 | -8.615850e-47 |
Msa0003300 | Msa0130970 | 0.807916 | 4.000009e-50 | -8.615850e-47 |
Msa0006110 | Msa0130970 | 0.844795 | 6.060419e-59 | -8.615850e-47 |
Msa0014710 | Msa0130970 | 0.825173 | 5.414079e-54 | -8.615850e-47 |
Msa0015390 | Msa0130970 | 0.822095 | 2.844673e-53 | -8.615850e-47 |
Msa0015400 | Msa0130970 | 0.813030 | 3.146413e-51 | -8.615850e-47 |
Msa0017510 | Msa0130970 | 0.818349 | 2.053061e-52 | -8.615850e-47 |
Msa0021210 | Msa0130970 | 0.800483 | 1.411016e-48 | -8.615850e-47 |
Msa0026430 | Msa0130970 | 0.813659 | 2.287991e-51 | -8.615850e-47 |
Msa0029850 | Msa0130970 | 0.835544 | 1.577667e-56 | -8.615850e-47 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0130970 | MtrunA17_Chr1g0199511 | 95.087 | 1486 | 64 | 4 | 1 | 1482 | 1 | 1481 | 0.0 | 2929 |
Msa0130970 | MtrunA17_Chr3g0116441 | 45.669 | 381 | 169 | 7 | 292 | 635 | 173 | 552 | 2.25e-99 | 352 |
Msa0130970 | MtrunA17_Chr3g0116441 | 52.326 | 172 | 58 | 2 | 1332 | 1479 | 1397 | 1568 | 8.74e-50 | 194 |
Msa0130970 | MtrunA17_Chr3g0116441 | 43.147 | 197 | 71 | 3 | 3 | 197 | 5 | 162 | 3.80e-39 | 160 |
Msa0130970 | MtrunA17_Chr3g0116441 | 36.800 | 125 | 75 | 3 | 704 | 825 | 766 | 889 | 1.23e-15 | 83.2 |
Msa0130970 | MtrunA17_Chr5g0410721 | 50.532 | 188 | 89 | 1 | 291 | 474 | 233 | 420 | 2.67e-57 | 214 |
Msa0130970 | MtrunA17_Chr1g0164731 | 45.213 | 188 | 99 | 1 | 291 | 474 | 189 | 376 | 1.29e-50 | 189 |
Msa0130970 | MtrunA17_Chr1g0164761 | 44.785 | 163 | 86 | 1 | 316 | 474 | 159 | 321 | 4.53e-45 | 172 |
Msa0130970 | MtrunA17_Chr2g0303101 | 40.426 | 235 | 136 | 3 | 295 | 528 | 264 | 495 | 2.97e-43 | 172 |
Msa0130970 | MtrunA17_Chr8g0380981 | 39.381 | 226 | 117 | 3 | 272 | 492 | 239 | 449 | 6.22e-41 | 165 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0130970 | AT5G04240.1 | 52.280 | 943 | 363 | 20 | 1 | 921 | 1 | 878 | 0.0 | 922 |
Msa0130970 | AT5G04240.1 | 56.650 | 203 | 82 | 3 | 1282 | 1478 | 1137 | 1339 | 6.20e-67 | 249 |
Msa0130970 | AT3G48430.1 | 47.154 | 369 | 156 | 8 | 297 | 635 | 206 | 565 | 3.02e-96 | 340 |
Msa0130970 | AT3G48430.1 | 63.717 | 113 | 41 | 0 | 1367 | 1479 | 1243 | 1355 | 1.23e-46 | 184 |
Msa0130970 | AT3G48430.1 | 46.032 | 189 | 79 | 4 | 9 | 194 | 13 | 181 | 9.14e-34 | 142 |
Msa0130970 | AT3G48430.1 | 34.286 | 140 | 87 | 4 | 704 | 840 | 737 | 874 | 5.96e-15 | 81.3 |
Msa0130970 | AT5G46910.2 | 47.317 | 205 | 103 | 2 | 275 | 474 | 230 | 434 | 5.92e-56 | 207 |
Msa0130970 | AT5G46910.1 | 47.317 | 205 | 103 | 2 | 275 | 474 | 230 | 434 | 9.22e-56 | 209 |
Msa0130970 | AT3G48430.2 | 63.717 | 113 | 41 | 0 | 1367 | 1479 | 884 | 996 | 3.98e-47 | 185 |
Msa0130970 | AT3G48430.2 | 33.023 | 215 | 105 | 8 | 451 | 635 | 1 | 206 | 8.00e-19 | 93.6 |
Find 349 sgRNAs with CRISPR-Local
Find 627 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACCCTAAATTGGGGATT+TGG | 0.264931 | 1_3:+61466386 | None:intergenic |
AAAATGCAGCATAGAGAACC+AGG | 0.603432 | 1_3:-61459480 | Msa0130970:CDS |
AAACACGATTCTGCATGACT+TGG | 0.518199 | 1_3:+61465516 | None:intergenic |
AAACCCTAAATTGGGGATTT+GGG | 0.267181 | 1_3:+61466387 | None:intergenic |
AAACGAGAATATAACTAATG+AGG | 0.562704 | 1_3:-61458844 | Msa0130970:CDS |
AAAGAGGAAAATGGAAGACA+CGG | 0.580046 | 1_3:-61458490 | Msa0130970:CDS |
AAAGATGAGAGTAACAAACA+AGG | 0.723432 | 1_3:-61457588 | Msa0130970:three_prime_UTR |
AAAGCAAAGGCATAATTTCC+AGG | 0.424207 | 1_3:+61465168 | None:intergenic |
AAAGGACTGATTATAAGAGT+AGG | 0.515773 | 1_3:-61465620 | Msa0130970:CDS |
AAAGGCATAATTTCCAGGAA+CGG | 0.617478 | 1_3:+61465173 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
AAATTGGGAATACTATGATG+AGG | + | chr1_3:61457590-61457609 | None:intergenic | 30.0% | |
AGTATTCCCAATTTCTTCAA+AGG | - | chr1_3:61457596-61457615 | Msa0130970:three_prime_UTR | 30.0% | |
TTAGCATACTCCACATAAAT+AGG | + | chr1_3:61458311-61458330 | None:intergenic | 30.0% | |
AAAGGACTGATTATAAGAGT+AGG | - | chr1_3:61458399-61458418 | Msa0130970:CDS | 30.0% | |
AAGGACTGATTATAAGAGTA+GGG | - | chr1_3:61458400-61458419 | Msa0130970:CDS | 30.0% | |
CAACATACCAATGTATATCA+TGG | + | chr1_3:61458741-61458760 | None:intergenic | 30.0% | |
TCCAAGGATGATAAAGTAAT+TGG | - | chr1_3:61459195-61459214 | Msa0130970:CDS | 30.0% | |
TAAGAATGTGTGAATTCTCT+TGG | - | chr1_3:61459286-61459305 | Msa0130970:CDS | 30.0% | |
TATTCTTAGAAATCGTGGTT+GGG | + | chr1_3:61459815-61459834 | None:intergenic | 30.0% | |
ATAGGTATTCTTAGAAATCG+TGG | + | chr1_3:61459820-61459839 | None:intergenic | 30.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_3 | gene | 61457470 | 61466571 | 61457470 | ID=Msa0130970;Name=Msa0130970 |
chr1_3 | mRNA | 61457470 | 61466571 | 61457470 | ID=Msa0130970-mRNA-1;Parent=Msa0130970;Name=Msa0130970-mRNA-1;_AED=0.01;_eAED=0.01;_QI=301|0.83|0.85|1|1|1|7|469|1482 |
chr1_3 | exon | 61457470 | 61460193 | 61457470 | ID=Msa0130970-mRNA-1:exon:20407;Parent=Msa0130970-mRNA-1 |
chr1_3 | exon | 61460705 | 61460896 | 61460705 | ID=Msa0130970-mRNA-1:exon:20406;Parent=Msa0130970-mRNA-1 |
chr1_3 | exon | 61461561 | 61462111 | 61461561 | ID=Msa0130970-mRNA-1:exon:20405;Parent=Msa0130970-mRNA-1 |
chr1_3 | exon | 61462590 | 61462740 | 61462590 | ID=Msa0130970-mRNA-1:exon:20404;Parent=Msa0130970-mRNA-1 |
chr1_3 | exon | 61463589 | 61463656 | 61463589 | ID=Msa0130970-mRNA-1:exon:20403;Parent=Msa0130970-mRNA-1 |
chr1_3 | exon | 61463824 | 61463902 | 61463824 | ID=Msa0130970-mRNA-1:exon:20402;Parent=Msa0130970-mRNA-1 |
chr1_3 | exon | 61465118 | 61466571 | 61465118 | ID=Msa0130970-mRNA-1:exon:20401;Parent=Msa0130970-mRNA-1 |
chr1_3 | five_prime_UTR | 61466271 | 61466571 | 61466271 | ID=Msa0130970-mRNA-1:five_prime_utr;Parent=Msa0130970-mRNA-1 |
chr1_3 | CDS | 61465118 | 61466270 | 61465118 | ID=Msa0130970-mRNA-1:cds;Parent=Msa0130970-mRNA-1 |
chr1_3 | CDS | 61463824 | 61463902 | 61463824 | ID=Msa0130970-mRNA-1:cds;Parent=Msa0130970-mRNA-1 |
chr1_3 | CDS | 61463589 | 61463656 | 61463589 | ID=Msa0130970-mRNA-1:cds;Parent=Msa0130970-mRNA-1 |
chr1_3 | CDS | 61462590 | 61462740 | 61462590 | ID=Msa0130970-mRNA-1:cds;Parent=Msa0130970-mRNA-1 |
chr1_3 | CDS | 61461561 | 61462111 | 61461561 | ID=Msa0130970-mRNA-1:cds;Parent=Msa0130970-mRNA-1 |
chr1_3 | CDS | 61460705 | 61460896 | 61460705 | ID=Msa0130970-mRNA-1:cds;Parent=Msa0130970-mRNA-1 |
chr1_3 | CDS | 61457939 | 61460193 | 61457939 | ID=Msa0130970-mRNA-1:cds;Parent=Msa0130970-mRNA-1 |
chr1_3 | three_prime_UTR | 61457470 | 61457938 | 61457470 | ID=Msa0130970-mRNA-1:three_prime_utr;Parent=Msa0130970-mRNA-1 |
Gene Sequence |
>Msa0130970 ATGGGTAATGCTGAAATCCCCAATTGGCTTGAAGGGTTGCCACTGGCACCTGAATTTCGACCAACTGATACTGAATTTTCCGACCCAATTGCTTATATCTCAAAGATTGAGCAGAAAGCTGGTAAATTTGGGATATGTAAGATTATCCCACCATTGCCCAAGCCTTCAAAAAAATATGTTTTTTCTAATTTGAATAAGTCCCTTTTGAAGCGGCCTGAATTGGGGCCAGATATTAGTTCTTTGGGTGCTGGTAATTCTTGGAAAACGGGTTCTGGGGATAGTAGTAATGATGGAGTGTCGCGGGCCGTGTTTACTACAAGGCAACAGGAAGTGGGACAAAATGTCAAAAAAACTAAAGGGGTTGTTCAGAAGTCAATGGCATGTGTCCATAAGCAAGTTTGGCAAAGTGGAGAAGTTTATACAATTGAACAGTTTGAGTCTAAATCGAAGACTTTTGCCAGAAGCGTTTTGGGTACGGCGAAGGATGTTTCTCCATTGGTTGTAGAGGCCATGTTTTGGAAGGCAGCTTCAGAGAAGCCTATTTATGTGGAGTATGCTAATGACGTGCCTGGTTCGGCGTTTGGAGAATCACAGGGTCAATTTTATCGTAGTCATCGAAGGCAACGGAAAAGGACTGATTATAAGAGTAGGGTAGATAGCTCTGTTTGTAAAGAAACTGAAATGGGTGGTGTAAATGATACACAAAATAATGAGTCTAAAGGCGTTCCTTCCCCAAGTCATGCAGAATCGTGTTTAGAGACGTCTAAATCAGCTATGACTTTGTCAACATCTACACCAAATGAGGCTTCACAGCCTTCTAAGGAGATGATTTCAGATGCTGACAATGATATGCAAGGCACTGCTGGTTGGAAGCTTTCAAATAGTCCTTGGAATCTGCAAGTTATTCCTCGTGCTTCAGGCTCACTAACACGTTTCATGCCAGATGATATTCCTGGTGTTACTTCACCCATGATATACATTGGTATGTTGTTTAGTTGGTTTGCCTGGCATGTAGAGGATCATGAACTTCACAGCTTGAATTTTCTTCACACTGGCTCATCAAAGACTTGGTACTCCGTTCCTGGAAATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACAGAGGGTTATGGTGGTGATGTTGATCAATTAGCTGCTTTGAAACTTTTGGGCGAAAAAACTACTCTTTTATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGCTGCAGGTTAGTACAGAATCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCACGGTTTTAACTGTGGGGAGGCTGCTAACTTTGGGACTCCACAATGGCTTGGCATAGCTAAAGAAGCTGCAGTGCGTAGAGCTACAATGAATCATCTTCCTATGCTCTCCCATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCAAGTGTGCCAAGAACACTATTACCTGGTGTGCGCAGTTCTCGTCTGAGAGACCGTCAGAAAGAAGAAAGAGAGATTCTAGTAAAACAGGCTTTTATAGAAGATATGCTGCACGAAAACAAGCTGCTATCCATTCTTCTTGGAAAAGAAGCTACTAAAGAAGTTGTTTTATGGAATGTTGATTTACTACCAGATTCTGGCAAATATCGCCAGTTGTCTGATTTAGCTTCTACTTCTGGAACCTATATGGCGGACATGTCAAATGATAATATTAGTTCTGCTGATAAGAGTAGCCATTGTCTGCTCGATGAGATGAGTTTGTACATGGAGAATCTGACTGATTCAGATGTTGGCTATGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGTTTGTGTGGGTTGTGGAATACTTGGTTTTCCATTTATGACATTAATACAACCAACTGAGAAATTGATAATGGAACTTCCTGATAATCATCTAGTTGAAGATTCCTCTCTGAACTCTGTTGGCTCCCTTCATAGTGCAGTCTCAAGTGCAGTCTCAAGGGATCTTTCTGTTTCTGAACTTGCTTCTGCAAAGGATTTGCCGGATCAGTCATTGAACGAGTGCAATAAATGTTGGAACACCTCCAGTACATTTTTGAAGCCACGGATTTTCTGCTTGGAGCATGCTGTTCAGGTTGTGGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTATCCGAAAATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGATACAAAGTGCTTTTGATTATAACGAGGTTCCAATGGATATTGCATCCCCAGAAAATTTGGCTTTGATAGATCTGGCAATTGATGGTAAAGAACTTGATGAATGTGAAGATTGGACATCTAAACTAGGTCTTAATCTGCGGTTTTGTGTCAATAATATAAACAAATCTCCATGTAAACAAGTTCCTTTTACGCTAGCATTGGGGATGCAGTTCTATGATAAACGTCCTGGTTTATCTTTAAATTGGCATTCACAGAAAGCTCGATCTAAAAGGTCAAATCGTTTAGCTCAGTCTAAACCTGACAACATTCAGAGAATGAAGGATGATCAATTGCAGGAAAGAATTGATGGCTCCACTGCTGAAAAGAAACTGCTTCAATATTCAAGGAGAAAATTCAAGCCAAAGCAAAGTTGTTTCTCTGTAGCAAGCACGGTCTGTGAATCCCATGAGAAGTCCAAAAATGTGTCAGCTGTTTTGAGTGCGGAGCATTATAAATTTGTTTCTAAAGATGAGCTTGACACAGACAATTTCAGGAGTGATTGTGCATTGTCACGTGGCTCTGCTTCTGCTGCAATGACTCCATTGCATAATGAAATCCAGAATGCTGAAGCTCCCACTAGTATGAGTTTGAATACTAGTGTCTCGGAAAAATGCAGCATAGAGAACCAGGATTGTCAGAACAATAAATATTCTGGCTCACTTACAAATGGAATAGACAAAAATGTCGATGTGTTTGGAAACAACCAAATTACTGAAGCCATTGGTAGCAAGTGTGATAACTTAGATTTAGATGGTGAAGGGTATCAAGAACATCAGTCTGCATGCAAAAGCAACAGTGAAGCTGTTTTATCTACTGCTTCATTGGTAAACCAAACTGCTCTCGCTACTGTGGATGGAAGTTTTGAAAGTCCAATTAATAACCAGGCCGAAGAAAGGGTTAGCAATTCTATGTCATTGAAAGAGACAACTGAGGGAGAAAGTAAGTCTTTGACTGAAATGGACGAGGAACCTCTAAATGATGATAAAGAAATGAGTGAACATGCTCCTACTGCAGACGTTTGTGAAGTTCCAAGAGAGCTTTATGCTTCTGCAAACTTCCATAATACAGTAAACTTGGATGCTGAGATGCAGCAAGAACGACAAGTTGGAGAAAGTGGCGAACAGGAAATAATTCAGTCCACTCATATTTCCACAAAACAATTGTGTGAATCTACAAGTGGGGAATATGCAGAGGGATTGCACGATGAAGTGATTTTGGAGTCTTCAAAGCAGAGTCTGGTCCAAAACGAGAATATAACTAATGAGGAACATGTATCTAGTTATGTTGCAAAAGGCGACAATAGAAGTATAACCATATCAGAAATAGGATGTTCTGAAGTTTCAGCAGAAACCTGTCCCAAAGAAGACTCATGTATTCAATTTGTTTCGAATACTGAAAAGAAAATGGAAATCCAACCCATTACTAGAGTTGATGAGGAACTCTCTACATCAATCCAGGAATGTTCTCAAACCGAGAAAAAGACGGGTGGCAGAGAAAATGTAAATGGAAGTGAAGTTGATTTGTCACAAGATGATGGGGAGCTGGAAAGCTGTGAGTTGACTACAGAAGTTCCCAGATCAAATGCTGGGAAGAAAAAAAAGAGGAAAATGGAAGACACGGAAAAAAACCAATTTGATTGCTATGACTTTATAAGAAGTCCGTGTGAGAGGCTGAGGCCAAGAACTGAGAAGATTGCTACAGGCAAAAGTGTAGGGGACAACAGCCAAAATGAGGAGGAAAATCCAGTAGCTAAAAGGACACGGAAACCTGCCGAAGCTTCAGTTCCTCGCAAGGATAAAAAATCCAATGTTAAAAGGCCGCATAAGTGTGACCTTGATAATTGCCGTATGAGTTTCACCACCAAGGCTGAGTTACAGTTGCACAAACGTAACCTTTGCCCACATGAAGGGTGCGGTAAGAAATTCAGTTCCCACAAATACGCATTGATTCACCAGCGTGTTCATGAGGATGATAGGCCCTTTAAATGCACATGGAAAGGTTGTTCCATGTCATTCAAGTGGTCATGGGCTAGGACAGAGCATCTAAGGGTGCATACTGGGGAGAAGCCTTATCAATGTAAGGTTGAGGGCTGCGGTCTTTCTTTCAGGTTCATATCAGATTTTAGCAGGCACAGGCGGAAAACAGGACACTACGTGAAATCTCCTGCTTGA |
Protein sequence |
>Msa0130970 MGNAEIPNWLEGLPLAPEFRPTDTEFSDPIAYISKIEQKAGKFGICKIIPPLPKPSKKYVFSNLNKSLLKRPELGPDISSLGAGNSWKTGSGDSSNDGVSRAVFTTRQQEVGQNVKKTKGVVQKSMACVHKQVWQSGEVYTIEQFESKSKTFARSVLGTAKDVSPLVVEAMFWKAASEKPIYVEYANDVPGSAFGESQGQFYRSHRRQRKRTDYKSRVDSSVCKETEMGGVNDTQNNESKGVPSPSHAESCLETSKSAMTLSTSTPNEASQPSKEMISDADNDMQGTAGWKLSNSPWNLQVIPRASGSLTRFMPDDIPGVTSPMIYIGMLFSWFAWHVEDHELHSLNFLHTGSSKTWYSVPGNYAFAFEEVIRTEGYGGDVDQLAALKLLGEKTTLLSPEVVVASGIPCCRLVQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLGIAKEAAVRRATMNHLPMLSHQQLLYLLTMSFISSVPRTLLPGVRSSRLRDRQKEEREILVKQAFIEDMLHENKLLSILLGKEATKEVVLWNVDLLPDSGKYRQLSDLASTSGTYMADMSNDNISSADKSSHCLLDEMSLYMENLTDSDVGYDDLPCHFQTDSGALVCVGCGILGFPFMTLIQPTEKLIMELPDNHLVEDSSLNSVGSLHSAVSSAVSRDLSVSELASAKDLPDQSLNECNKCWNTSSTFLKPRIFCLEHAVQVVEMLQSKGGANVLIICHSDYPKIKAHARAVAEEIQSAFDYNEVPMDIASPENLALIDLAIDGKELDECEDWTSKLGLNLRFCVNNINKSPCKQVPFTLALGMQFYDKRPGLSLNWHSQKARSKRSNRLAQSKPDNIQRMKDDQLQERIDGSTAEKKLLQYSRRKFKPKQSCFSVASTVCESHEKSKNVSAVLSAEHYKFVSKDELDTDNFRSDCALSRGSASAAMTPLHNEIQNAEAPTSMSLNTSVSEKCSIENQDCQNNKYSGSLTNGIDKNVDVFGNNQITEAIGSKCDNLDLDGEGYQEHQSACKSNSEAVLSTASLVNQTALATVDGSFESPINNQAEERVSNSMSLKETTEGESKSLTEMDEEPLNDDKEMSEHAPTADVCEVPRELYASANFHNTVNLDAEMQQERQVGESGEQEIIQSTHISTKQLCESTSGEYAEGLHDEVILESSKQSLVQNENITNEEHVSSYVAKGDNRSITISEIGCSEVSAETCPKEDSCIQFVSNTEKKMEIQPITRVDEELSTSIQECSQTEKKTGGRENVNGSEVDLSQDDGELESCELTTEVPRSNAGKKKKRKMEDTEKNQFDCYDFIRSPCERLRPRTEKIATGKSVGDNSQNEEENPVAKRTRKPAEASVPRKDKKSNVKRPHKCDLDNCRMSFTTKAELQLHKRNLCPHEGCGKKFSSHKYALIHQRVHEDDRPFKCTWKGCSMSFKWSWARTEHLRVHTGEKPYQCKVEGCGLSFRFISDFSRHRRKTGHYVKSPA* |