AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1163820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163820 MtrunA17_Chr7g0261221 97.765 179 4 0 1 179 1 179 5.08e-125 349
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1163820 AT2G44820.2 58.268 127 50 2 24 149 20 144 2.69e-36 125
Msa1163820 AT2G44820.1 58.268 127 50 2 24 149 39 163 3.21e-36 125

Find 75 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTAGAGATGAGGTTGAAAT+TGG 0.201280 7_4:+55229127 None:intergenic
ACGTTATTCAACTTCTTTAT+AGG 0.212149 7_4:-55223139 Msa1163820:three_prime_UTR
CGTATGATTCTAGGACGTTT+TGG 0.217863 7_4:-55223461 Msa1163820:CDS
ATTGGTCGTGCCACACTTAA+AGG 0.224539 7_4:+55223650 None:intergenic
TTTCATTTGTGTTAACAAAA+AGG 0.242565 7_4:+55222986 None:intergenic
TGCTTATTGTTATGTTCTCT+TGG 0.258679 7_4:+55224240 None:intergenic
AACACAGGCAGTGATGATTT+TGG 0.268752 7_4:+55229056 None:intergenic
CAACTGGAAACATGATAAAA+AGG 0.272902 7_4:-55223249 Msa1163820:CDS
AAGAGAAAATACTGAAGTTT+TGG 0.276418 7_4:+55224178 None:intergenic
GCCTTTCAGCGTATGATTCT+AGG 0.290954 7_4:-55223470 Msa1163820:intron
TGAACAACAAAAGGAGGAAT+AGG 0.325431 7_4:-55228815 Msa1163820:five_prime_UTR
CTGTATGATCTTTATAAATC+TGG 0.342433 7_4:-55223172 Msa1163820:three_prime_UTR
AATGGACATCAGGAAGATTA+TGG 0.351249 7_4:-55224208 Msa1163820:CDS
GAACTAATGCACGAAATAGA+TGG 0.358945 7_4:-55223028 Msa1163820:three_prime_UTR
GGAAGGGGAAGCGACTGGTC+AGG 0.378735 7_4:+55228932 None:intergenic
TTATAGCAAACTCGCGTTTG+AGG 0.379144 7_4:-55229013 Msa1163820:five_prime_UTR
AATGAGAACTAGAGGATAGA+TGG 0.399091 7_4:+55228853 None:intergenic
CCAGTGTCATGACCTCTTGT+GGG 0.400870 7_4:+55223308 None:intergenic
AGAGAAAGAGAGAGCATTGA+AGG 0.406638 7_4:-55229102 Msa1163820:five_prime_UTR
CACTGCCTGTGTTGTTGCAT+TGG 0.419073 7_4:-55229046 Msa1163820:five_prime_UTR
AGGAAAATGAAATGGACATC+AGG 0.425149 7_4:-55224218 Msa1163820:CDS
TTATTGTTATGTTCTCTTGG+AGG 0.434023 7_4:+55224243 None:intergenic
GAACAACAAAAGGAGGAATA+GGG 0.437611 7_4:-55228814 Msa1163820:five_prime_UTR
AACTTCAAACCTCTGTCCTC+TGG 0.439918 7_4:+55223389 None:intergenic
TGCCTGTGTTGTTGCATTGG+AGG 0.443561 7_4:-55229043 Msa1163820:five_prime_UTR
GACATGGAAAGAGCGCAAAA+AGG 0.445441 7_4:-55223839 Msa1163820:CDS
TCAATGCTCTCTCTTTCTCT+AGG 0.445760 7_4:+55229105 None:intergenic
CAATAAGCAGGAAAATGAAA+TGG 0.447339 7_4:-55224226 Msa1163820:CDS
GGTTGTTTCCCTTGGTGGGA+AGG 0.454986 7_4:-55223803 Msa1163820:intron
GATAGGAAGGTTGTTTCCCT+TGG 0.461391 7_4:-55223811 Msa1163820:CDS
TTAGAGATGAGGTTGAAATT+GGG 0.465999 7_4:+55229128 None:intergenic
TCCAGTGTCATGACCTCTTG+TGG 0.466337 7_4:+55223307 None:intergenic
ACTAGAGGATAGATGGATGT+TGG 0.474704 7_4:+55228860 None:intergenic
GAAGGGGAAGCGACTGGTCA+GGG 0.487527 7_4:+55228933 None:intergenic
GGTTGAAATTGGGCTTCAAA+AGG 0.487898 7_4:+55229138 None:intergenic
AACTAATGCACGAAATAGAT+GGG 0.488096 7_4:-55223027 Msa1163820:three_prime_UTR
GTGTGGCGGCGGCTGAGAGA+TGG 0.495623 7_4:+55228904 None:intergenic
GTGACTAGTGTGTGTGGCGG+CGG 0.498056 7_4:+55228893 None:intergenic
ATAGATGGATGTTGGATTGG+TGG 0.502454 7_4:+55228868 None:intergenic
AGGTAATCTTTGATTCTTGA+GGG 0.502643 7_4:+55223670 None:intergenic
CTGAGAGATGGAGGTTGGAA+GGG 0.507687 7_4:+55228916 None:intergenic
AGGATAGATGGATGTTGGAT+TGG 0.508202 7_4:+55228865 None:intergenic
AATAGGGAAAACGAAATTGA+AGG 0.509739 7_4:-55228798 Msa1163820:intron
GCTGAGAGATGGAGGTTGGA+AGG 0.517895 7_4:+55228915 None:intergenic
TGAGAGATGGAGGTTGGAAG+GGG 0.517966 7_4:+55228917 None:intergenic
AAGAAACAAGCTCACGGACG+TGG 0.521086 7_4:-55224267 Msa1163820:CDS
AAGGTAATCTTTGATTCTTG+AGG 0.525330 7_4:+55223669 None:intergenic
GGAAGGTTGTTTCCCTTGGT+GGG 0.530525 7_4:-55223807 Msa1163820:CDS
ATCAAATAAATGAGAACTAG+AGG 0.533664 7_4:+55228845 None:intergenic
AAGAGAACATAACAATAAGC+AGG 0.534086 7_4:-55224238 Msa1163820:CDS
CTTTCTCTAGGTTAGAGATG+AGG 0.535468 7_4:+55229117 None:intergenic
AGGAAGGTTGTTTCCCTTGG+TGG 0.540449 7_4:-55223808 Msa1163820:CDS
TTCTATTGAACAACAAAAGG+AGG 0.543428 7_4:-55228821 Msa1163820:five_prime_UTR
GGCGGCTGAGAGATGGAGGT+TGG 0.560293 7_4:+55228911 None:intergenic
TAAAGAAGTTGAATAACGTA+AGG 0.562313 7_4:+55223143 None:intergenic
GATGGATGTTGGATTGGTGG+TGG 0.585879 7_4:+55228871 None:intergenic
AGGTTGGAAGGGGAAGCGAC+TGG 0.591488 7_4:+55228927 None:intergenic
TTGAAGTCAACACCCACAAG+AGG 0.593893 7_4:-55223320 Msa1163820:CDS
TCAAAGATTACCTTTAAGTG+TGG 0.597312 7_4:-55223660 Msa1163820:CDS
GGTAATCTTTGATTCTTGAG+GGG 0.603282 7_4:+55223671 None:intergenic
AAGGGGAAGCGACTGGTCAG+GGG 0.616975 7_4:+55228934 None:intergenic
CCCACAAGAGGTCATGACAC+TGG 0.620094 7_4:-55223308 Msa1163820:CDS
TAGGCAACTCGCATATGACA+TGG 0.625414 7_4:-55223855 Msa1163820:CDS
AGACCTCACCTTCCCACCAA+GGG 0.627792 7_4:+55223795 None:intergenic
TGGCGGCGGCTGAGAGATGG+AGG 0.631330 7_4:+55228907 None:intergenic
GCGTTTGAGGCTACGAAACG+CGG 0.639783 7_4:-55229000 Msa1163820:five_prime_UTR
AGAGGTTTGAAGTTAAGTGA+AGG 0.641153 7_4:-55223380 Msa1163820:CDS
ATCCTCCAATGCAACAACAC+AGG 0.641863 7_4:+55229041 None:intergenic
TACAAGAAGAAACAAGCTCA+CGG 0.651983 7_4:-55224273 Msa1163820:CDS
GTGGTGACTAGTGTGTGTGG+CGG 0.658560 7_4:+55228890 None:intergenic
TAGACCTCACCTTCCCACCA+AGG 0.660546 7_4:+55223794 None:intergenic
ACTAATGCACGAAATAGATG+GGG 0.669882 7_4:-55223026 Msa1163820:three_prime_UTR
AGCTGGAAAACACAAACCAG+AGG 0.689560 7_4:-55223405 Msa1163820:CDS
GTGGTGGTGACTAGTGTGTG+TGG 0.710488 7_4:+55228887 None:intergenic
AAACACAAACCAGAGGACAG+AGG 0.717192 7_4:-55223398 Msa1163820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTTATTTATAATAAA+AGG + chr7_4:55225503-55225522 None:intergenic 0.0%
!! TATTATTTATTTATAATAAA+AGG + chr7_4:55225503-55225522 None:intergenic 0.0%
!!! TTTTTTTTTATTTTAAACCA+AGG - chr7_4:55224215-55224234 Msa1163820:CDS 10.0%
!! ATTGTAAGATAATAAAAATT+AGG + chr7_4:55225058-55225077 None:intergenic 10.0%
!! TATGTATATTATTTAGATTT+AGG - chr7_4:55226861-55226880 Msa1163820:intron 10.0%
!!! TCATTTCATTATTTTAAATT+TGG - chr7_4:55228177-55228196 Msa1163820:intron 10.0%
!!! CATTTCATTATTTTAAATTT+GGG - chr7_4:55228178-55228197 Msa1163820:intron 10.0%
!!! ATTTCATTATTTTAAATTTG+GGG - chr7_4:55228179-55228198 Msa1163820:intron 10.0%
!!! TAATAATTGTTGCTTAATAT+TGG - chr7_4:55223559-55223578 Msa1163820:intron 15.0%
!!! TTTTTGTTTTTATGAAATAG+CGG + chr7_4:55223900-55223919 None:intergenic 15.0%
!! AAACAAAAACAACAAAAATA+AGG - chr7_4:55223911-55223930 Msa1163820:intron 15.0%
!! TTGTTAAACAAAAAAATAAC+AGG - chr7_4:55224088-55224107 Msa1163820:intron 15.0%
!!! AATGATTTTTTCATCAAAAA+TGG - chr7_4:55224654-55224673 Msa1163820:intron 15.0%
!! TAAAAAAAATCCAAAACAAA+CGG - chr7_4:55224729-55224748 Msa1163820:intron 15.0%
!!! TTTTTATTATCTTACAATCA+AGG - chr7_4:55225060-55225079 Msa1163820:intron 15.0%
!! TTTATTTATAATAAAAGGCA+AGG + chr7_4:55225498-55225517 None:intergenic 15.0%
!! TGTGTTTGTTTAAAAAATAA+AGG + chr7_4:55225535-55225554 None:intergenic 15.0%
!! TTTATTTATAATAAAAGGCA+AGG + chr7_4:55225498-55225517 None:intergenic 15.0%
!!! TACTGTTTTTGTAAAATAAA+AGG + chr7_4:55225614-55225633 None:intergenic 15.0%
!!! TACTATATTAGTTTATGTTT+TGG - chr7_4:55226024-55226043 Msa1163820:intron 15.0%
!! TACTACAATATACAATATAT+AGG + chr7_4:55226170-55226189 None:intergenic 15.0%
!!! TGATTTTATGCTTTATTATT+GGG + chr7_4:55227363-55227382 None:intergenic 15.0%
!!! ATTTTCTATTGAACAACAAA+AGG - chr7_4:55223318-55223337 Msa1163820:CDS 20.0%
!! TTTCTCTTAAAATGAAATAG+CGG - chr7_4:55224250-55224269 Msa1163820:CDS 20.0%
!! AGATTTCCATTTGATTATTA+TGG - chr7_4:55224420-55224439 Msa1163820:intron 20.0%
!! GATTTCCATTTGATTATTAT+GGG - chr7_4:55224421-55224440 Msa1163820:intron 20.0%
!! CAAACACTACAAATATAAAA+AGG - chr7_4:55224697-55224716 Msa1163820:intron 20.0%
!! AAAAAAAATCCAAAACAAAC+GGG - chr7_4:55224730-55224749 Msa1163820:intron 20.0%
!!! TGATTTATAAGAAGGTATTT+CGG + chr7_4:55225434-55225453 None:intergenic 20.0%
!! AAAGTAAGTGATTTATAAGA+AGG + chr7_4:55225442-55225461 None:intergenic 20.0%
!! TTGTTTAAAAAATAAAGGCA+AGG + chr7_4:55225530-55225549 None:intergenic 20.0%
!!! TTTTTGTAAAATAAAAGGCA+AGG + chr7_4:55225609-55225628 None:intergenic 20.0%
!!! TAAAGTTTAGTTCTGTTATT+TGG - chr7_4:55225938-55225957 Msa1163820:intron 20.0%
!! CTAATATAGTATATGAAGTT+TGG + chr7_4:55226015-55226034 None:intergenic 20.0%
!!! TATGTTTTGGATGAATTAAT+TGG - chr7_4:55226037-55226056 Msa1163820:intron 20.0%
!!! TAATATTTTGAGCATACAAA+TGG + chr7_4:55226502-55226521 None:intergenic 20.0%
!! TATTATTATGCAAAGTTGTA+TGG - chr7_4:55226517-55226536 Msa1163820:intron 20.0%
!! TTGTTATGTTATGTATTGTT+AGG - chr7_4:55226808-55226827 Msa1163820:intron 20.0%
!! TTGAATACACTAAACTAATA+AGG + chr7_4:55226924-55226943 None:intergenic 20.0%
!!! ATTTTATCCATAATTTCTCT+GGG + chr7_4:55227031-55227050 None:intergenic 20.0%
!! AGAAATTATGGATAAAATCT+TGG - chr7_4:55227033-55227052 Msa1163820:intron 20.0%
!! GAAATTATGGATAAAATCTT+GGG - chr7_4:55227034-55227053 Msa1163820:intron 20.0%
!! AAATTATGGATAAAATCTTG+GGG - chr7_4:55227035-55227054 Msa1163820:intron 20.0%
!! TATAAGATTGATATTGAATG+CGG - chr7_4:55227061-55227080 Msa1163820:intron 20.0%
!!! GTGATTTTATGCTTTATTAT+TGG + chr7_4:55227364-55227383 None:intergenic 20.0%
!! TAAAGGAAAAAAATCAACTT+AGG + chr7_4:55227589-55227608 None:intergenic 20.0%
!! AAATGAATGATTTAAAAGCT+TGG + chr7_4:55227740-55227759 None:intergenic 20.0%
!!! TTTCAATTTTCAGTTACTAT+GGG - chr7_4:55227839-55227858 Msa1163820:intron 20.0%
!! TGTTGGAGTTAAATAATTTA+TGG - chr7_4:55228202-55228221 Msa1163820:intron 20.0%
!!! TGTTACCTTCTTTTTTATAA+TGG - chr7_4:55228244-55228263 Msa1163820:intron 20.0%
!! CAAAAATAGAACAAGATAAA+AGG + chr7_4:55229049-55229068 None:intergenic 20.0%
!!! TTCTATTTTTGTTTGTATAC+TGG - chr7_4:55229058-55229077 Msa1163820:five_prime_UTR 20.0%
! ATCAAATAAATGAGAACTAG+AGG + chr7_4:55223300-55223319 None:intergenic 25.0%
! CAATTAGATAAGAAGAGATA+AGG + chr7_4:55223387-55223406 None:intergenic 25.0%
!!! CTTGTTTTAGTGAAAATAAG+TGG - chr7_4:55223662-55223681 Msa1163820:CDS 25.0%
!! GTTTTATATGAACAAAACAG+AGG - chr7_4:55223955-55223974 Msa1163820:intron 25.0%
! AACTAGAACAAAAAAGTAAC+AGG - chr7_4:55224048-55224067 Msa1163820:intron 25.0%
! AGAAAATACAAAATTGTCCT+TGG + chr7_4:55224235-55224254 None:intergenic 25.0%
!! CACTTGAGAAAAATAGATTT+TGG - chr7_4:55224593-55224612 Msa1163820:intron 25.0%
!! TGAAATAGCTTTTCATTTTG+AGG - chr7_4:55224626-55224645 Msa1163820:intron 25.0%
!! TATTCGCATTTTTATCATGT+TGG - chr7_4:55224808-55224827 Msa1163820:intron 25.0%
!! ATTCGCATTTTTATCATGTT+GGG - chr7_4:55224809-55224828 Msa1163820:intron 25.0%
! TAATGAGTTATGTTGTGAAA+AGG - chr7_4:55224989-55225008 Msa1163820:intron 25.0%
! TAGAAATCTTATCTCTTGTT+TGG - chr7_4:55225393-55225412 Msa1163820:intron 25.0%
!! AGAAATCTTATCTCTTGTTT+GGG - chr7_4:55225394-55225413 Msa1163820:intron 25.0%
! TATTTGGATGAAATTTAGAC+AGG - chr7_4:55225954-55225973 Msa1163820:intron 25.0%
! AATATGGAAAATAGTACATG+AGG + chr7_4:55226101-55226120 None:intergenic 25.0%
!! ATGTACTATTTTCCATATTC+TGG - chr7_4:55226102-55226121 Msa1163820:intron 25.0%
! AATAAATGCGTAAACAGATT+AGG - chr7_4:55226249-55226268 Msa1163820:intron 25.0%
! ACCAAGAATATAAGTTGTTA+AGG - chr7_4:55226284-55226303 Msa1163820:intron 25.0%
! CCAAGAATATAAGTTGTTAA+GGG - chr7_4:55226285-55226304 Msa1163820:intron 25.0%
!! TCTTGATTTTCTTCTTAACA+TGG + chr7_4:55226454-55226473 None:intergenic 25.0%
! ATTAATGCAACAATCATAAG+AGG + chr7_4:55226545-55226564 None:intergenic 25.0%
! GATCTGAAAACAATAACAAT+GGG + chr7_4:55226666-55226685 None:intergenic 25.0%
! TGATCTGAAAACAATAACAA+TGG + chr7_4:55226667-55226686 None:intergenic 25.0%
! GGAATATTGTAAATTGATAC+CGG + chr7_4:55227010-55227029 None:intergenic 25.0%
!! GATTTTATCCATAATTTCTC+TGG + chr7_4:55227032-55227051 None:intergenic 25.0%
! TTGAATATAGTAGAAGCAAA+AGG + chr7_4:55227311-55227330 None:intergenic 25.0%
!! TATGCTTTATTATTGGGATT+TGG + chr7_4:55227357-55227376 None:intergenic 25.0%
!!! CTCATTTTTACAATAGTGTA+GGG + chr7_4:55227457-55227476 None:intergenic 25.0%
!!! TCTCATTTTTACAATAGTGT+AGG + chr7_4:55227458-55227477 None:intergenic 25.0%
! ACACTATTGTAAAAATGAGA+AGG - chr7_4:55227458-55227477 Msa1163820:intron 25.0%
! CACTATTGTAAAAATGAGAA+GGG - chr7_4:55227459-55227478 Msa1163820:intron 25.0%
! ACTATTGTAAAAATGAGAAG+GGG - chr7_4:55227460-55227479 Msa1163820:intron 25.0%
! CTATTCAACTACTAGATTAA+AGG + chr7_4:55227606-55227625 None:intergenic 25.0%
!!! CTTATTTCTATTTAGTCAAG+AGG - chr7_4:55227676-55227695 Msa1163820:intron 25.0%
!!! CAAGTTTTGTTTTTGTTTGT+GGG - chr7_4:55227794-55227813 Msa1163820:intron 25.0%
!! CTTTCAATTTTCAGTTACTA+TGG - chr7_4:55227838-55227857 Msa1163820:intron 25.0%
!! AAGAGAAAATACTGAAGTTT+TGG + chr7_4:55227967-55227986 None:intergenic 25.0%
! TGATAAGAACGAATTTGAAT+TGG - chr7_4:55228123-55228142 Msa1163820:intron 25.0%
!!! TTATTTTAAATTTGGGGTGT+TGG - chr7_4:55228185-55228204 Msa1163820:intron 25.0%
! AGTAGCCATTATAAAAAAGA+AGG + chr7_4:55228252-55228271 None:intergenic 25.0%
! TACTCATTGCAATATATCTT+AGG - chr7_4:55228268-55228287 Msa1163820:intron 25.0%
!!! TGTTTTTGTTTCTTCATCAT+TGG + chr7_4:55228513-55228532 None:intergenic 25.0%
! TGATAGAATTAATTACCTCT+TGG + chr7_4:55228554-55228573 None:intergenic 25.0%
! TGTTGTACAAACAAATAAAG+AGG + chr7_4:55228581-55228600 None:intergenic 25.0%
! AGGAATTATAAGAAAGTAAG+TGG + chr7_4:55228601-55228620 None:intergenic 25.0%
! GGAAAAAATATGTCAAATAC+AGG - chr7_4:55228855-55228874 Msa1163820:five_prime_UTR 25.0%
! TCAAATACAGGAAAAAGAAA+AGG - chr7_4:55228867-55228886 Msa1163820:five_prime_UTR 25.0%
! AACTGGAAACATGATAAAAA+GGG - chr7_4:55228894-55228913 Msa1163820:five_prime_UTR 25.0%
! CTGTATGATCTTTATAAATC+TGG - chr7_4:55228970-55228989 Msa1163820:five_prime_UTR 25.0%
! TAAAGAAGTTGAATAACGTA+AGG + chr7_4:55229002-55229021 None:intergenic 25.0%
! ACGTTATTCAACTTCTTTAT+AGG - chr7_4:55229003-55229022 Msa1163820:five_prime_UTR 25.0%
TTAGAGATGAGGTTGAAATT+GGG + chr7_4:55223017-55223036 None:intergenic 30.0%
TTCTATTGAACAACAAAAGG+AGG - chr7_4:55223321-55223340 Msa1163820:CDS 30.0%
AATAGGGAAAACGAAATTGA+AGG - chr7_4:55223344-55223363 Msa1163820:CDS 30.0%
! AAATAAGTGGTTTGAGACTT+AGG - chr7_4:55223675-55223694 Msa1163820:intron 30.0%
ATCTTACTAGCATTAAACTG+AGG - chr7_4:55223726-55223745 Msa1163820:intron 30.0%
GTTGCCATATTAGTTAATAG+CGG - chr7_4:55223827-55223846 Msa1163820:CDS 30.0%
CTATCCGCTATTAACTAATA+TGG + chr7_4:55223834-55223853 None:intergenic 30.0%
GTTTAACAATCTCAAAACTC+TGG + chr7_4:55224077-55224096 None:intergenic 30.0%
! GTAAATTTTCCTCTACTTTG+TGG + chr7_4:55224129-55224148 None:intergenic 30.0%
ATTGAATTACTTCATGAGCA+TGG - chr7_4:55224935-55224954 Msa1163820:intron 30.0%
!!! TTTTTGCCATTTTTATGGTC+AGG - chr7_4:55225169-55225188 Msa1163820:intron 30.0%
AAGAAGAGAAACACTGTATA+AGG - chr7_4:55225275-55225294 Msa1163820:intron 30.0%
AGAAGAGAAACACTGTATAA+GGG - chr7_4:55225276-55225295 Msa1163820:intron 30.0%
TATAAGGGAAGATGTAATCA+AGG - chr7_4:55225291-55225310 Msa1163820:intron 30.0%
!! TAAGAAGGTATTTCGGTATT+GGG + chr7_4:55225427-55225446 None:intergenic 30.0%
!! ATAAGAAGGTATTTCGGTAT+TGG + chr7_4:55225428-55225447 None:intergenic 30.0%
TAAAGTTGGGAAATGTAACA+CGG + chr7_4:55225789-55225808 None:intergenic 30.0%
CAATAGAGTGATAGAAATTG+AGG - chr7_4:55225867-55225886 Msa1163820:intron 30.0%
!!! GGTTTTAAATAGACGAAGAA+TGG - chr7_4:55226058-55226077 Msa1163820:intron 30.0%
! ACTATTTTCCATATTCTGGA+TGG - chr7_4:55226106-55226125 Msa1163820:intron 30.0%
CCCTTAACAACTTATATTCT+TGG + chr7_4:55226288-55226307 None:intergenic 30.0%
TGTTGCATTAATGTTAGTGT+TGG - chr7_4:55226553-55226572 Msa1163820:intron 30.0%
TTAGACTGTATCTGATGATT+AGG - chr7_4:55226588-55226607 Msa1163820:intron 30.0%
TCCATAACAGAGTTATTCAT+CGG + chr7_4:55226714-55226733 None:intergenic 30.0%
TGGTTTAAGCTTGTAACTAA+AGG - chr7_4:55226954-55226973 Msa1163820:intron 30.0%
CAATATTCCCAGAGAAATTA+TGG - chr7_4:55227021-55227040 Msa1163820:intron 30.0%
! ATAGGTCACTATTAGTTTAG+TGG - chr7_4:55227098-55227117 Msa1163820:intron 30.0%
ACTATTAGTAATGTGGCAAA+TGG - chr7_4:55227191-55227210 Msa1163820:intron 30.0%
ATGAGTCATAAGGTTCAAAA+GGG + chr7_4:55227228-55227247 None:intergenic 30.0%
AATGAGTCATAAGGTTCAAA+AGG + chr7_4:55227229-55227248 None:intergenic 30.0%
! TGAACCTTATGACTCATTTT+AGG - chr7_4:55227231-55227250 Msa1163820:intron 30.0%
! GAACCTTATGACTCATTTTA+GGG - chr7_4:55227232-55227251 Msa1163820:intron 30.0%
CAAGATAGAAGTTCAAAAGA+TGG + chr7_4:55227279-55227298 None:intergenic 30.0%
! GGAAAATTCTAAAAACTGAC+TGG + chr7_4:55227336-55227355 None:intergenic 30.0%
CTATTGTAAAAATGAGAAGG+GGG - chr7_4:55227461-55227480 Msa1163820:intron 30.0%
!! TGGCACATTATTTCACTTTT+AGG - chr7_4:55227555-55227574 Msa1163820:intron 30.0%
!! GGCACATTATTTCACTTTTA+GGG - chr7_4:55227556-55227575 Msa1163820:intron 30.0%
TGTTGTATGTATCTATCACA+TGG - chr7_4:55227626-55227645 Msa1163820:intron 30.0%
CCACAAACAAAAACAAAACT+TGG + chr7_4:55227796-55227815 None:intergenic 30.0%
!!! CCAAGTTTTGTTTTTGTTTG+TGG - chr7_4:55227793-55227812 Msa1163820:intron 30.0%
TTATTGTTATGTTCTCTTGG+AGG + chr7_4:55227902-55227921 None:intergenic 30.0%
TGCTTATTGTTATGTTCTCT+TGG + chr7_4:55227905-55227924 None:intergenic 30.0%
AAGAGAACATAACAATAAGC+AGG - chr7_4:55227904-55227923 Msa1163820:intron 30.0%
CAATAAGCAGGAAAATGAAA+TGG - chr7_4:55227916-55227935 Msa1163820:intron 30.0%
AAAAAAGAAGGTAACAAACC+AGG + chr7_4:55228240-55228259 None:intergenic 30.0%
TATCGTGTTCTATTTGCAAA+TGG - chr7_4:55228393-55228412 Msa1163820:intron 30.0%
AGGTAATCTTTGATTCTTGA+GGG + chr7_4:55228475-55228494 None:intergenic 30.0%
AAGGTAATCTTTGATTCTTG+AGG + chr7_4:55228476-55228495 None:intergenic 30.0%
TCAAAGATTACCTTTAAGTG+TGG - chr7_4:55228482-55228501 Msa1163820:intron 30.0%
TGATGAAGAAACAAAAACAG+AGG - chr7_4:55228514-55228533 Msa1163820:intron 30.0%
GATGAAGAAACAAAAACAGA+GGG - chr7_4:55228515-55228534 Msa1163820:intron 30.0%
GTACAAACAAATAAAGAGGA+GGG + chr7_4:55228577-55228596 None:intergenic 30.0%
TGTACAAACAAATAAAGAGG+AGG + chr7_4:55228578-55228597 None:intergenic 30.0%
AAGTAAGTGGTACGTATATA+AGG + chr7_4:55228621-55228640 None:intergenic 30.0%
! AGTGAAGGTCGATTTAAAAA+TGG - chr7_4:55228777-55228796 Msa1163820:intron 30.0%
AATACAGGAAAAAGAAAAGG+AGG - chr7_4:55228870-55228889 Msa1163820:five_prime_UTR 30.0%
CAACTGGAAACATGATAAAA+AGG - chr7_4:55228893-55228912 Msa1163820:five_prime_UTR 30.0%
AACTAATGCACGAAATAGAT+GGG - chr7_4:55229115-55229134 Msa1163820:five_prime_UTR 30.0%
GTTAGAGATGAGGTTGAAAT+TGG + chr7_4:55223018-55223037 None:intergenic 35.0%
AATGAGAACTAGAGGATAGA+TGG + chr7_4:55223292-55223311 None:intergenic 35.0%
TGAACAACAAAAGGAGGAAT+AGG - chr7_4:55223327-55223346 Msa1163820:CDS 35.0%
GAACAACAAAAGGAGGAATA+GGG - chr7_4:55223328-55223347 Msa1163820:CDS 35.0%
! TATCCCGCTATAGCATTTTT+GGG + chr7_4:55223861-55223880 None:intergenic 35.0%
TAGAGGAAAATTTACAGCAG+AGG - chr7_4:55224134-55224153 Msa1163820:intron 35.0%
ACGCACCCATAATAATCAAA+TGG + chr7_4:55224429-55224448 None:intergenic 35.0%
TATTATGGGTGCGTTTGTTT+CGG - chr7_4:55224435-55224454 Msa1163820:intron 35.0%
ATTCCTTCCTATAGGCTTAT+TGG + chr7_4:55224900-55224919 None:intergenic 35.0%
TGAAGTCAATTCCTTCCTAT+AGG + chr7_4:55224908-55224927 None:intergenic 35.0%
!! GAAAAGGATTAGCTCAACTT+AGG - chr7_4:55225005-55225024 Msa1163820:intron 35.0%
!! GGATTGTTTAGCTCTAAAGA+AGG - chr7_4:55225026-55225045 Msa1163820:intron 35.0%
!!! GGTCGTTTTTGCCATTTTTA+TGG - chr7_4:55225164-55225183 Msa1163820:intron 35.0%
AACATAAGGAAAAAACGTGC+TGG - chr7_4:55225211-55225230 Msa1163820:intron 35.0%
ACATAAGGAAAAAACGTGCT+GGG - chr7_4:55225212-55225231 Msa1163820:intron 35.0%
! TTACAACTTTTCCCTTGAGT+GGG - chr7_4:55225753-55225772 Msa1163820:intron 35.0%
AGTTCTTACATAGGTTCGAT+CGG + chr7_4:55225826-55225845 None:intergenic 35.0%
CTATTGTAAGCAATGTAGTC+AGG + chr7_4:55225853-55225872 None:intergenic 35.0%
GGTACTTATCAGATGAAGAA+TGG - chr7_4:55225975-55225994 Msa1163820:intron 35.0%
TGGAAAATAGTACATGAGGT+AGG + chr7_4:55226097-55226116 None:intergenic 35.0%
ACAGGTTAATAGACGAACAA+TGG - chr7_4:55226133-55226152 Msa1163820:intron 35.0%
TCAAAAGACAAATGCGACTT+GGG + chr7_4:55226319-55226338 None:intergenic 35.0%
TTAAATGTGAGCAGAAGAGT+CGG - chr7_4:55226361-55226380 Msa1163820:intron 35.0%
TATCCAACTTATTCACCTGT+CGG + chr7_4:55226413-55226432 None:intergenic 35.0%
TCTTCTTAACATGGATAAGC+CGG + chr7_4:55226445-55226464 None:intergenic 35.0%
AAACAATAACAATGGGAGTG+AGG + chr7_4:55226659-55226678 None:intergenic 35.0%
AACACGTACACATAGGTAAA+AGG - chr7_4:55226686-55226705 Msa1163820:intron 35.0%
! TTTTCGAACTACTTCGAGAT+AGG - chr7_4:55226834-55226853 Msa1163820:intron 35.0%
AAGGTAGCTCAAGTTTACTT+GGG + chr7_4:55226905-55226924 None:intergenic 35.0%
TAAGGTAGCTCAAGTTTACT+TGG + chr7_4:55226906-55226925 None:intergenic 35.0%
GTGTATTCAAATTCCAACAG+TGG - chr7_4:55226934-55226953 Msa1163820:intron 35.0%
TTACAAGCTTAAACCACTGT+TGG + chr7_4:55226950-55226969 None:intergenic 35.0%
TAACTAAAGGCTGAAATTGC+TGG - chr7_4:55226967-55226986 Msa1163820:intron 35.0%
! ACTATTAGTTTAGTGGTGGA+TGG - chr7_4:55227105-55227124 Msa1163820:intron 35.0%
GGTACAGTAATGGTTTGAAT+TGG - chr7_4:55227126-55227145 Msa1163820:intron 35.0%
ATGGTTTGAATTGGAGTTGA+TGG - chr7_4:55227135-55227154 Msa1163820:intron 35.0%
ACTGGTCACTATTAGTAATG+TGG - chr7_4:55227184-55227203 Msa1163820:intron 35.0%
AGACCCTAAAATGAGTCATA+AGG + chr7_4:55227238-55227257 None:intergenic 35.0%
ATAGTAGAAGCAAAAGGCAA+AGG + chr7_4:55227305-55227324 None:intergenic 35.0%
AAACACATCAGAAGAGCAAA+TGG + chr7_4:55227766-55227785 None:intergenic 35.0%
TTGAAAGAGAGAAGACGTAA+GGG + chr7_4:55227825-55227844 None:intergenic 35.0%
ATTGAAAGAGAGAAGACGTA+AGG + chr7_4:55227826-55227845 None:intergenic 35.0%
TACAAGAAGAAACAAGCTCA+CGG - chr7_4:55227869-55227888 Msa1163820:intron 35.0%
AGGAAAATGAAATGGACATC+AGG - chr7_4:55227924-55227943 Msa1163820:intron 35.0%
AATGGACATCAGGAAGATTA+TGG - chr7_4:55227934-55227953 Msa1163820:intron 35.0%
AGAAGATAGACAACATTCAG+TGG + chr7_4:55228015-55228034 None:intergenic 35.0%
TTATGGTAAGCATATTCACC+TGG - chr7_4:55228219-55228238 Msa1163820:intron 35.0%
CAAAAAGGTTGAAGATAGGA+AGG - chr7_4:55228318-55228337 Msa1163820:intron 35.0%
TGAATAAGAGCAGATGAACA+CGG + chr7_4:55228450-55228469 None:intergenic 35.0%
GGTAATCTTTGATTCTTGAG+GGG + chr7_4:55228474-55228493 None:intergenic 35.0%
!!! GTATGATTCTAGGACGTTTT+GGG - chr7_4:55228682-55228701 Msa1163820:intron 35.0%
!!! TATGATTCTAGGACGTTTTG+GGG - chr7_4:55228683-55228702 Msa1163820:intron 35.0%
! AGAGGTTTGAAGTTAAGTGA+AGG - chr7_4:55228762-55228781 Msa1163820:intron 35.0%
TGGAAACATGATAAAAAGGG+TGG - chr7_4:55228897-55228916 Msa1163820:five_prime_UTR 35.0%
AAACATGATAAAAAGGGTGG+TGG - chr7_4:55228900-55228919 Msa1163820:five_prime_UTR 35.0%
!!! GACCTTCTTTTTTTGACGTT+TGG - chr7_4:55229086-55229105 Msa1163820:five_prime_UTR 35.0%
CACCAAACGTCAAAAAAAGA+AGG + chr7_4:55229091-55229110 None:intergenic 35.0%
GAACTAATGCACGAAATAGA+TGG - chr7_4:55229114-55229133 Msa1163820:five_prime_UTR 35.0%
ACTAATGCACGAAATAGATG+GGG - chr7_4:55229116-55229135 Msa1163820:five_prime_UTR 35.0%
GGTTGAAATTGGGCTTCAAA+AGG + chr7_4:55223007-55223026 None:intergenic 40.0%
CTTTCTCTAGGTTAGAGATG+AGG + chr7_4:55223028-55223047 None:intergenic 40.0%
TCAATGCTCTCTCTTTCTCT+AGG + chr7_4:55223040-55223059 None:intergenic 40.0%
!! AGAGAAAGAGAGAGCATTGA+AGG - chr7_4:55223040-55223059 Msa1163820:three_prime_UTR 40.0%
! AACACAGGCAGTGATGATTT+TGG + chr7_4:55223089-55223108 None:intergenic 40.0%
TTATAGCAAACTCGCGTTTG+AGG - chr7_4:55223129-55223148 Msa1163820:three_prime_UTR 40.0%
! ATAGATGGATGTTGGATTGG+TGG + chr7_4:55223277-55223296 None:intergenic 40.0%
AGGATAGATGGATGTTGGAT+TGG + chr7_4:55223280-55223299 None:intergenic 40.0%
ACTAGAGGATAGATGGATGT+TGG + chr7_4:55223285-55223304 None:intergenic 40.0%
GTTAGCTACGTTGTGAATTG+CGG + chr7_4:55223499-55223518 None:intergenic 40.0%
! GGTTTGAGACTTAGGTTAGA+TGG - chr7_4:55223683-55223702 Msa1163820:intron 40.0%
ACTAGCATTAAACTGAGGAG+AGG - chr7_4:55223731-55223750 Msa1163820:intron 40.0%
! GAGAGGTGAGTTTTTCTGAT+TGG - chr7_4:55223748-55223767 Msa1163820:intron 40.0%
TTGTTGAAGTGTGTGTACTG+TGG + chr7_4:55223782-55223801 None:intergenic 40.0%
GTCTGCTTCCATTAGTAGAA+TGG - chr7_4:55223803-55223822 Msa1163820:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG + chr7_4:55223860-55223879 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG + chr7_4:55223862-55223881 None:intergenic 40.0%
! CAGAAACAGAGAGAGCATAA+TGG - chr7_4:55223999-55224018 Msa1163820:intron 40.0%
! AGAGAGAGCATAATGGAGTT+TGG - chr7_4:55224006-55224025 Msa1163820:intron 40.0%
CTACAATCTACAGACCCTAT+GGG + chr7_4:55224756-55224775 None:intergenic 40.0%
TCTACAATCTACAGACCCTA+TGG + chr7_4:55224757-55224776 None:intergenic 40.0%
CATGAGCATGGTATGATAGT+AGG - chr7_4:55224947-55224966 Msa1163820:intron 40.0%
ATCTTACAATCAAGGTAGCC+AGG - chr7_4:55225068-55225087 Msa1163820:intron 40.0%
CTCGATCCTGACCATAAAAA+TGG + chr7_4:55225178-55225197 None:intergenic 40.0%
GTTTCTGCAGCAGAAACATA+AGG - chr7_4:55225197-55225216 Msa1163820:intron 40.0%
!!! TCTTTTATTTTGACCCGACC+TGG + chr7_4:55225247-55225266 None:intergenic 40.0%
!!! CTTGTTTTCTGTTTCTGCTG+CGG - chr7_4:55225324-55225343 Msa1163820:intron 40.0%
GAAGAGGACTCAGTCAAATT+AGG - chr7_4:55225361-55225380 Msa1163820:intron 40.0%
! TTATCTCTTGTTTGGGCCTA+AGG - chr7_4:55225401-55225420 Msa1163820:intron 40.0%
! GTTACAACTTTTCCCTTGAG+TGG - chr7_4:55225752-55225771 Msa1163820:intron 40.0%
TCAGGAACGAGTTCTTACAT+AGG + chr7_4:55225835-55225854 None:intergenic 40.0%
CTGTCAATCCATCCAGAATA+TGG + chr7_4:55226117-55226136 None:intergenic 40.0%
!! CATATTCTGGATGGATTGAC+AGG - chr7_4:55226115-55226134 Msa1163820:intron 40.0%
GTCAAAAGACAAATGCGACT+TGG + chr7_4:55226320-55226339 None:intergenic 40.0%
TTTATTACAGCCTTACCGAC+AGG - chr7_4:55226395-55226414 Msa1163820:intron 40.0%
AACTTATTCACCTGTCGGTA+AGG + chr7_4:55226408-55226427 None:intergenic 40.0%
TTACCGACAGGTGAATAAGT+TGG - chr7_4:55226407-55226426 Msa1163820:intron 40.0%
GTGAGGTCTACTTATTTCAG+TGG + chr7_4:55226642-55226661 None:intergenic 40.0%
TCAGATCAACACGTACACAT+AGG - chr7_4:55226679-55226698 Msa1163820:intron 40.0%
GCCGATGAATAACTCTGTTA+TGG - chr7_4:55226710-55226729 Msa1163820:intron 40.0%
! GGTCACTATTAGTTTAGTGG+TGG - chr7_4:55227101-55227120 Msa1163820:intron 40.0%
!! GTTTGAATTGGAGTTGATGG+TGG - chr7_4:55227138-55227157 Msa1163820:intron 40.0%
CCAAGTATTTCGACATCGAT+CGG + chr7_4:55227538-55227557 None:intergenic 40.0%
GTCGTAGTACATGTATGAAG+AGG - chr7_4:55227713-55227732 Msa1163820:intron 40.0%
TGAAAGAGAGAAGACGTAAG+GGG + chr7_4:55227824-55227843 None:intergenic 40.0%
AGCGCAAAAAGGTTGAAGAT+AGG - chr7_4:55228314-55228333 Msa1163820:intron 40.0%
GAAGAAACAAAAACAGAGGG+AGG - chr7_4:55228518-55228537 Msa1163820:intron 40.0%
GCACAAGTGGTACGTATATA+AGG + chr7_4:55228654-55228673 None:intergenic 40.0%
TCCTAGAATCATACGCTGAA+AGG + chr7_4:55228676-55228695 None:intergenic 40.0%
!!! CGTATGATTCTAGGACGTTT+TGG - chr7_4:55228681-55228700 Msa1163820:intron 40.0%
!!! ATGATTCTAGGACGTTTTGG+GGG - chr7_4:55228684-55228703 Msa1163820:intron 40.0%
GAAAAAGAAAAGGAGGCAAC+TGG - chr7_4:55228877-55228896 Msa1163820:five_prime_UTR 40.0%
! TAAAAAGGGTGGTGGTAAGA+AGG - chr7_4:55228908-55228927 Msa1163820:five_prime_UTR 40.0%
ATCCTCCAATGCAACAACAC+AGG + chr7_4:55223104-55223123 None:intergenic 45.0%
TGGCAACGCCATTCTACTAA+TGG + chr7_4:55223814-55223833 None:intergenic 45.0%
CAGCCCCAAAAATGCTATAG+CGG - chr7_4:55223854-55223873 Msa1163820:CDS 45.0%
AGCCCCAAAAATGCTATAGC+GGG - chr7_4:55223855-55223874 Msa1163820:CDS 45.0%
TAGCAAACGCCACAAAGTAG+AGG - chr7_4:55224117-55224136 Msa1163820:intron 45.0%
ACAGAACAGCTGAAAAGCAG+AGG - chr7_4:55224169-55224188 Msa1163820:intron 45.0%
ACGCCCATAGTAGTCAATAG+CGG + chr7_4:55224376-55224395 None:intergenic 45.0%
! ATCAAGGTCGTAGCTCGTTT+TGG + chr7_4:55225141-55225160 None:intergenic 45.0%
! GTATTTCGGTATTGGGCCTT+AGG + chr7_4:55225420-55225439 None:intergenic 45.0%
GTTCGTAAGAACCCACTCAA+GGG + chr7_4:55225767-55225786 None:intergenic 45.0%
TGGTGAAGGGACGTAAAGTT+GGG + chr7_4:55225802-55225821 None:intergenic 45.0%
!! TGTCAACTGCTGATTCTGAC+AGG - chr7_4:55226192-55226211 Msa1163820:intron 45.0%
AAGTTGGATATCCTCACGTC+CGG - chr7_4:55226423-55226442 Msa1163820:intron 45.0%
! GCGGTTGATGTTAGAGTGAT+AGG - chr7_4:55227080-55227099 Msa1163820:intron 45.0%
!! AGTGGTGGATGGTACAGTAA+TGG - chr7_4:55227116-55227135 Msa1163820:intron 45.0%
!! GAGTTGATGGTGGTTGAATG+TGG - chr7_4:55227148-55227167 Msa1163820:intron 45.0%
!! TGATGGTGGTTGAATGTGGT+TGG - chr7_4:55227152-55227171 Msa1163820:intron 45.0%
!! TGTGGTTGGTGTTGAGTAAC+TGG - chr7_4:55227166-55227185 Msa1163820:intron 45.0%
CCGATCGATGTCGAAATACT+TGG - chr7_4:55227535-55227554 Msa1163820:intron 45.0%
TAGGCAACTCGCATATGACA+TGG - chr7_4:55228287-55228306 Msa1163820:intron 45.0%
! GACATGGAAAGAGCGCAAAA+AGG - chr7_4:55228303-55228322 Msa1163820:intron 45.0%
! GATAGGAAGGTTGTTTCCCT+TGG - chr7_4:55228331-55228350 Msa1163820:intron 45.0%
ATTGGTCGTGCCACACTTAA+AGG + chr7_4:55228495-55228514 None:intergenic 45.0%
GGAGGAAAAAATGCTCCAAG+AGG - chr7_4:55228536-55228555 Msa1163820:intron 45.0%
GCCTTTCAGCGTATGATTCT+AGG - chr7_4:55228672-55228691 Msa1163820:intron 45.0%
AGCAGCAGTAAAAAACCAGC+TGG - chr7_4:55228720-55228739 Msa1163820:intron 45.0%
!! TCTGGTTTGTGTTTTCCAGC+TGG + chr7_4:55228738-55228757 None:intergenic 45.0%
AGCTGGAAAACACAAACCAG+AGG - chr7_4:55228737-55228756 Msa1163820:intron 45.0%
AAACACAAACCAGAGGACAG+AGG - chr7_4:55228744-55228763 Msa1163820:intron 45.0%
AACTTCAAACCTCTGTCCTC+TGG + chr7_4:55228756-55228775 None:intergenic 45.0%
TTGAAGTCAACACCCACAAG+AGG - chr7_4:55228822-55228841 Msa1163820:five_prime_UTR 45.0%
!! ATTATTAAAATCAAAATTAT+TGG - chr7_4:55223606-55223625 Msa1163820:intron 5.0%
!! TTAAAATAAAAAAAAAACAA+GGG + chr7_4:55224211-55224230 None:intergenic 5.0%
!!! TTTAAAATAAAAAAAAAACA+AGG + chr7_4:55224212-55224231 None:intergenic 5.0%
! CACTGCCTGTGTTGTTGCAT+TGG - chr7_4:55223096-55223115 Msa1163820:three_prime_UTR 50.0%
! TGCCTGTGTTGTTGCATTGG+AGG - chr7_4:55223099-55223118 Msa1163820:three_prime_UTR 50.0%
TGAGAGATGGAGGTTGGAAG+GGG + chr7_4:55223228-55223247 None:intergenic 50.0%
CTGAGAGATGGAGGTTGGAA+GGG + chr7_4:55223229-55223248 None:intergenic 50.0%
!! GATGGATGTTGGATTGGTGG+TGG + chr7_4:55223274-55223293 None:intergenic 50.0%
! AACGCTTCGTAGCGGTTTTG+CGG + chr7_4:55224283-55224302 None:intergenic 50.0%
TATCTCACACCGCAACGCTA+TGG - chr7_4:55224310-55224329 Msa1163820:intron 50.0%
! CGGCCGCTATTGACTACTAT+GGG - chr7_4:55224370-55224389 Msa1163820:intron 50.0%
! TACTATGGGCGTTGCAGCTT+CGG - chr7_4:55224384-55224403 Msa1163820:intron 50.0%
TCCAAAACAAACGGGCCCAT+AGG - chr7_4:55224738-55224757 Msa1163820:intron 50.0%
CCAAAACAAACGGGCCCATA+GGG - chr7_4:55224739-55224758 Msa1163820:intron 50.0%
CGGCCAATAAGCCTATAGGA+AGG - chr7_4:55224894-55224913 Msa1163820:intron 50.0%
!! AGGTCGTAGCTCGTTTTGGT+GGG + chr7_4:55225137-55225156 None:intergenic 50.0%
! AAGGTCGTAGCTCGTTTTGG+TGG + chr7_4:55225138-55225157 None:intergenic 50.0%
AACGAGCTACGACCTTGATC+TGG - chr7_4:55225142-55225161 Msa1163820:intron 50.0%
ACGAGCTACGACCTTGATCT+GGG - chr7_4:55225143-55225162 Msa1163820:intron 50.0%
GGCAAAAACGACCCAGATCA+AGG + chr7_4:55225157-55225176 None:intergenic 50.0%
GGTTCGTAAGAACCCACTCA+AGG + chr7_4:55225768-55225787 None:intergenic 50.0%
CTGGTGAAGGGACGTAAAGT+TGG + chr7_4:55225803-55225822 None:intergenic 50.0%
CTTACATAGGTTCGATCGGC+TGG + chr7_4:55225822-55225841 None:intergenic 50.0%
TGTGAGCAGAAGAGTCGGAA+AGG - chr7_4:55226366-55226385 Msa1163820:intron 50.0%
! CAGAAGAGTCGGAAAGGTAC+TGG - chr7_4:55226372-55226391 Msa1163820:intron 50.0%
AAGAAACAAGCTCACGGACG+TGG - chr7_4:55227875-55227894 Msa1163820:intron 50.0%
! AGGAAGGTTGTTTCCCTTGG+TGG - chr7_4:55228334-55228353 Msa1163820:intron 50.0%
! GGAAGGTTGTTTCCCTTGGT+GGG - chr7_4:55228335-55228354 Msa1163820:intron 50.0%
! CATACGCTGAAAGGCACAAG+TGG + chr7_4:55228667-55228686 None:intergenic 50.0%
!!! TCTAGGACGTTTTGGGGGAA+AGG - chr7_4:55228689-55228708 Msa1163820:intron 50.0%
CCAGTGTCATGACCTCTTGT+GGG + chr7_4:55228837-55228856 None:intergenic 50.0%
TCCAGTGTCATGACCTCTTG+TGG + chr7_4:55228838-55228857 None:intergenic 50.0%
! GCGTTTGAGGCTACGAAACG+CGG - chr7_4:55223142-55223161 Msa1163820:three_prime_UTR 55.0%
GCTGAGAGATGGAGGTTGGA+AGG + chr7_4:55223230-55223249 None:intergenic 55.0%
GTGGTGACTAGTGTGTGTGG+CGG + chr7_4:55223255-55223274 None:intergenic 55.0%
! GTGGTGGTGACTAGTGTGTG+TGG + chr7_4:55223258-55223277 None:intergenic 55.0%
AGCGTTGCGGTGTGAGATAG+CGG + chr7_4:55224309-55224328 None:intergenic 55.0%
CGCAACAAGCCATAGCGTTG+CGG + chr7_4:55224322-55224341 None:intergenic 55.0%
! GCGGCCGCTATTGACTACTA+TGG - chr7_4:55224369-55224388 Msa1163820:intron 55.0%
! CCCTATGGGCCCGTTTGTTT+TGG + chr7_4:55224742-55224761 None:intergenic 55.0%
GTGTGTGTGTGTGCATGCTG+CGG - chr7_4:55224874-55224893 Msa1163820:intron 55.0%
GCTGCGGCCAATAAGCCTAT+AGG - chr7_4:55224890-55224909 Msa1163820:intron 55.0%
ATCGTGCGATCCTACGTGCT+GGG + chr7_4:55225101-55225120 None:intergenic 55.0%
!! GGTCGTAGCTCGTTTTGGTG+GGG + chr7_4:55225136-55225155 None:intergenic 55.0%
CTGGGCTCTACAAACCAGGT+CGG - chr7_4:55225230-55225249 Msa1163820:intron 55.0%
TGGGCTCTACAAACCAGGTC+GGG - chr7_4:55225231-55225250 Msa1163820:intron 55.0%
CTGAGTCCTCTTCTTCCCCA+TGG + chr7_4:55225354-55225373 None:intergenic 55.0%
AGGTTCGATCGGCTGGTGAA+GGG + chr7_4:55225815-55225834 None:intergenic 55.0%
TAGGTTCGATCGGCTGGTGA+AGG + chr7_4:55225816-55225835 None:intergenic 55.0%
ACATGGATAAGCCGGACGTG+AGG + chr7_4:55226437-55226456 None:intergenic 55.0%
! GGTTGTTTCCCTTGGTGGGA+AGG - chr7_4:55228339-55228358 Msa1163820:intron 55.0%
TTTCCCTTGGTGGGAAGGTG+AGG - chr7_4:55228344-55228363 Msa1163820:intron 55.0%
AGACCTCACCTTCCCACCAA+GGG + chr7_4:55228350-55228369 None:intergenic 55.0%
TAGACCTCACCTTCCCACCA+AGG + chr7_4:55228351-55228370 None:intergenic 55.0%
!!! GGACGTTTTGGGGGAAAGGA+TGG - chr7_4:55228693-55228712 Msa1163820:intron 55.0%
!!! CGTTTTGGGGGAAAGGATGG+TGG - chr7_4:55228696-55228715 Msa1163820:intron 55.0%
CCCACAAGAGGTCATGACAC+TGG - chr7_4:55228834-55228853 Msa1163820:five_prime_UTR 55.0%
! AAGGGGAAGCGACTGGTCAG+GGG + chr7_4:55223211-55223230 None:intergenic 60.0%
! GAAGGGGAAGCGACTGGTCA+GGG + chr7_4:55223212-55223231 None:intergenic 60.0%
AGGTTGGAAGGGGAAGCGAC+TGG + chr7_4:55223218-55223237 None:intergenic 60.0%
GTGACTAGTGTGTGTGGCGG+CGG + chr7_4:55223252-55223271 None:intergenic 60.0%
!! TGGCTTGTTGCGTAGCGCTC+CGG - chr7_4:55224330-55224349 Msa1163820:intron 60.0%
AGTAGTCAATAGCGGCCGCG+CGG + chr7_4:55224368-55224387 None:intergenic 60.0%
! TGGGCGTTGCAGCTTCGGTT+TGG - chr7_4:55224389-55224408 Msa1163820:intron 60.0%
TACGTGCTGGGACTCGATCC+TGG + chr7_4:55225089-55225108 None:intergenic 60.0%
AGGATCGAGTCCCAGCACGT+AGG - chr7_4:55225088-55225107 Msa1163820:intron 60.0%
GATCGTGCGATCCTACGTGC+TGG + chr7_4:55225102-55225121 None:intergenic 60.0%
CGTGCTGGGCTCTACAAACC+AGG - chr7_4:55225226-55225245 Msa1163820:intron 60.0%
TTTCTGCTGCGGCGCTCCAT+GGG - chr7_4:55225335-55225354 Msa1163820:intron 60.0%
! GGAAGGGGAAGCGACTGGTC+AGG + chr7_4:55223213-55223232 None:intergenic 65.0%
GGCGGCTGAGAGATGGAGGT+TGG + chr7_4:55223234-55223253 None:intergenic 65.0%
AGCGGCGCAACGCTTCGTAG+CGG + chr7_4:55224291-55224310 None:intergenic 65.0%
GTTTCTGCTGCGGCGCTCCA+TGG - chr7_4:55225334-55225353 Msa1163820:intron 65.0%
TTCTGCTGCGGCGCTCCATG+GGG - chr7_4:55225336-55225355 Msa1163820:intron 65.0%
GGCGCTCCATGGGGAAGAAG+AGG - chr7_4:55225345-55225364 Msa1163820:intron 65.0%
TGGCGGCGGCTGAGAGATGG+AGG + chr7_4:55223238-55223257 None:intergenic 70.0%
GTGTGGCGGCGGCTGAGAGA+TGG + chr7_4:55223241-55223260 None:intergenic 70.0%
TCAATAGCGGCCGCGCGGTG+CGG + chr7_4:55224363-55224382 None:intergenic 70.0%
! CGCGCGGTGCGGTGCGGTGC+CGG + chr7_4:55224352-55224371 None:intergenic 85.0%
! CGGCACCGCACCGCACCGCG+CGG - chr7_4:55224350-55224369 Msa1163820:intron 85.0%
! AGCGGCCGCGCGGTGCGGTG+CGG + chr7_4:55224358-55224377 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 55222994 55229170 55222994 ID=Msa1163820;Name=Msa1163820
chr7_4 mRNA 55222994 55229170 55222994 ID=Msa1163820-mRNA-1;Parent=Msa1163820;Name=Msa1163820-mRNA-1;_AED=0.20;_eAED=0.20;_QI=377|1|1|1|0.75|0.6|5|226|179
chr7_4 exon 55222994 55223483 55222994 ID=Msa1163820-mRNA-1:exon:16163;Parent=Msa1163820-mRNA-1
chr7_4 exon 55223607 55223693 55223607 ID=Msa1163820-mRNA-1:exon:16162;Parent=Msa1163820-mRNA-1
chr7_4 exon 55223804 55223874 55223804 ID=Msa1163820-mRNA-1:exon:16161;Parent=Msa1163820-mRNA-1
chr7_4 exon 55224190 55224312 55224190 ID=Msa1163820-mRNA-1:exon:16160;Parent=Msa1163820-mRNA-1
chr7_4 exon 55228799 55229170 55228799 ID=Msa1163820-mRNA-1:exon:16159;Parent=Msa1163820-mRNA-1
chr7_4 five_prime_UTR 55228799 55229170 55228799 ID=Msa1163820-mRNA-1:five_prime_utr;Parent=Msa1163820-mRNA-1
chr7_4 five_prime_UTR 55224308 55224312 55224308 ID=Msa1163820-mRNA-1:five_prime_utr;Parent=Msa1163820-mRNA-1
chr7_4 CDS 55224190 55224307 55224190 ID=Msa1163820-mRNA-1:cds;Parent=Msa1163820-mRNA-1
chr7_4 CDS 55223804 55223874 55223804 ID=Msa1163820-mRNA-1:cds;Parent=Msa1163820-mRNA-1
chr7_4 CDS 55223607 55223693 55223607 ID=Msa1163820-mRNA-1:cds;Parent=Msa1163820-mRNA-1
chr7_4 CDS 55223220 55223483 55223220 ID=Msa1163820-mRNA-1:cds;Parent=Msa1163820-mRNA-1
chr7_4 three_prime_UTR 55222994 55223219 55222994 ID=Msa1163820-mRNA-1:three_prime_utr;Parent=Msa1163820-mRNA-1
Gene Sequence

>Msa1163820

ATGGGAAAGATGTACAAGAAGAAACAAGCTCACGGACGTGGACCTCCAAGAGAACATAACAATAAGCAGGAAAATGAAATGGACATCAGGAAGATTATGGAAGACGTCCAAAACTTCAGCAACTCGCATATGACATGGAAAGAGCGCAAAAAGGTTGAAGATAGGAAGGTTGTTTCCCTTGGTGGGAAGCCCCTCAAGAATCAAAGATTACCTTTAAGTGTGGCACGACCAATGATGAAGAAACAAAAACAGAGGGAGGAAAAAATGCTCCAAGAGCGTATGATTCTAGGACGTTTTGGGGGAAAGGATGGTGGTAGCAGCAGTAAAAAACCAGCTGGAAAACACAAACCAGAGGACAGAGGTTTGAAGTTAAGTGAAGGTCGATTTAAAAATGGCATACTCGACGTGAAGCATTTGTTGAAGTCAACACCCACAAGAGGTCATGACACTGGAAAAAATATGTCAAATACAGGAAAAAGAAAAGGAGGCAACTGGAAACATGATAAAAAGGGTGGTGGTAAGAAGGATCAAATGTTTTAG
Protein sequence

>Msa1163820

MGKMYKKKQAHGRGPPREHNNKQENEMDIRKIMEDVQNFSNSHMTWKERKKVEDRKVVSLGGKPLKNQRLPLSVARPMMKKQKQREEKMLQERMILGRFGGKDGGSSSKKPAGKHKPEDRGLKLSEGRFKNGILDVKHLLKSTPTRGHDTGKNMSNTGKRKGGNWKHDKKGGGKKDQMF*