AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0908080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0908080 MtrunA17_Chr3g0117331 97.738 221 5 0 1 221 1 221 3.04e-164 456
Msa0908080 MtrunA17_Chr4g0058851 59.211 228 85 2 1 221 1 227 2.85e-86 258
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0908080 AT5G63050.1 39.744 234 128 3 1 221 1 234 5.07e-45 153
Msa0908080 AT5G63050.2 38.197 233 117 3 9 221 3 228 3.60e-42 145

Find 138 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTCAATTCCTCTTAT+TGG 0.103995 6_2:+9069648 Msa0908080:five_prime_UTR
TAAAGCAAAATATTTGTTTA+AGG 0.141032 6_2:+9070313 Msa0908080:CDS
CAAAGGAACTAACTCCATTA+TGG 0.172017 6_2:+9071921 Msa0908080:CDS
TGAGTCATTTGTAGAGTTTC+AGG 0.172652 6_2:-9071372 None:intergenic
TTCATGAACAAACCTCTTTC+TGG 0.175817 6_2:+9072662 Msa0908080:three_prime_UTR
AAGATTTAATGTATTCTTAA+AGG 0.192237 6_2:+9072286 Msa0908080:three_prime_UTR
TTAAAGGCGGTTTAATAAAA+TGG 0.199655 6_2:+9069970 Msa0908080:exon
CGGCATCCAGGGACAGAAAA+TGG 0.202023 6_2:-9071434 None:intergenic
AGTACCTTCTTGGTGCATTT+TGG 0.204122 6_2:+9072044 Msa0908080:three_prime_UTR
ACTAACTCCATTATGGGTTT+TGG 0.228614 6_2:+9071928 Msa0908080:CDS
TCCTGTTGATTTAGTGGATT+TGG 0.230874 6_2:+9069940 Msa0908080:five_prime_UTR
AAAACCCCAGCACCATAAAA+TGG 0.234882 6_2:-9072390 None:intergenic
TGGATTTGGATAAAGTTTAA+AGG 0.267253 6_2:+9069954 Msa0908080:five_prime_UTR
ACGTACTCTTCTGCTGATTA+TGG 0.297846 6_2:-9072822 None:intergenic
ATATAAATTCAACATGAATT+AGG 0.299154 6_2:-9072444 None:intergenic
ATTCAGGAAGCAGGGCTAAT+TGG 0.312850 6_2:+9071139 Msa0908080:CDS
ACAAGGTTCTATATGAGATT+TGG 0.314845 6_2:+9072520 Msa0908080:three_prime_UTR
TACTTAGGAAAGTACCTTCT+TGG 0.316335 6_2:+9072034 Msa0908080:three_prime_UTR
AAAGGAACTAACTCCATTAT+GGG 0.335355 6_2:+9071922 Msa0908080:CDS
CTGATTGCCCGACAATAATA+TGG 0.338312 6_2:-9072237 None:intergenic
AGTATTGCAGGAATGGTTAA+TGG 0.345772 6_2:+9072182 Msa0908080:three_prime_UTR
AGTAGGTCCTGTTGATTTAG+TGG 0.352698 6_2:+9069934 Msa0908080:intron
ATTTATATTGTTCTTAGATT+AGG 0.354240 6_2:+9072459 Msa0908080:three_prime_UTR
AAGGATATTGAAAGTATTGC+AGG 0.361213 6_2:+9072170 Msa0908080:three_prime_UTR
GGTAGTCTTCAGAAAAGTTA+AGG 0.364797 6_2:+9072307 Msa0908080:three_prime_UTR
TTGATTATGTGGAATCAATA+TGG 0.372639 6_2:+9072214 Msa0908080:three_prime_UTR
TTGACAAAACATCATATGAT+TGG 0.390341 6_2:+9070267 Msa0908080:CDS
TATGTTATGTTAGGGTTCTT+CGG 0.393889 6_2:+9069537 Msa0908080:five_prime_UTR
TAGTGGCCCAAAACCCATAA+TGG 0.400783 6_2:-9071935 None:intergenic
AATCCTCAAAGGTTTGATCT+TGG 0.413593 6_2:-9071085 None:intergenic
AGAACTCAAAATGATAATTC+AGG 0.416403 6_2:+9071123 Msa0908080:CDS
ATCTATCATGTTGTTTAACC+TGG 0.421047 6_2:+9072631 Msa0908080:three_prime_UTR
CTGGCTGTTAATGTAAAATA+TGG 0.423757 6_2:+9071887 Msa0908080:CDS
CTGCAGTGTTCCTCTGTACC+TGG 0.423978 6_2:+9071868 Msa0908080:intron
ATAATGATGAATGCCAAGTA+TGG 0.424082 6_2:-9069604 None:intergenic
ATGTGTAAAGCCACAATTAG+TGG 0.427250 6_2:-9071952 None:intergenic
GTAAATATACCTGTGGTTGA+TGG 0.427818 6_2:-9070003 None:intergenic
TTAAAGTTTGTTGTGTATCA+TGG 0.431223 6_2:+9072984 Msa0908080:three_prime_UTR
GATGATAGACAGAAGCGATA+TGG 0.432356 6_2:-9069487 None:intergenic
CTTTCTGGTTGAGGTGCGAA+TGG 0.433073 6_2:+9072677 Msa0908080:three_prime_UTR
TCCAAATCCACTAAATCAAC+AGG 0.436298 6_2:-9069941 None:intergenic
AAAATGATAATTCAGGAAGC+AGG 0.451996 6_2:+9071130 Msa0908080:CDS
AACAAACCTCTTTCTGGTTG+AGG 0.453914 6_2:+9072668 Msa0908080:three_prime_UTR
AGAGTTTCAGGTAAAATTGT+GGG 0.465553 6_2:-9071360 None:intergenic
GGCATTTGTCATGGAGCAAA+AGG 0.469933 6_2:+9070226 Msa0908080:CDS
GTATCGTTATTGCGGCATCC+AGG 0.470073 6_2:-9071446 None:intergenic
GTAGTCTTCAGAAAAGTTAA+GGG 0.472462 6_2:+9072308 Msa0908080:three_prime_UTR
AATCTACAATTTCCTTCCCC+GGG 0.475388 6_2:-9072888 None:intergenic
CAATCTACAATTTCCTTCCC+CGG 0.478206 6_2:-9072889 None:intergenic
AGGTTAAACAACATGATAGA+TGG 0.479439 6_2:-9072629 None:intergenic
AAACCCCAGCACCATAAAAT+GGG 0.489534 6_2:-9072389 None:intergenic
GGACAAGTATCTTGATTATG+TGG 0.490040 6_2:+9072203 Msa0908080:three_prime_UTR
CAATATGGCCATATTATTGT+CGG 0.490731 6_2:+9072229 Msa0908080:three_prime_UTR
TAGAGTTTCAGGTAAAATTG+TGG 0.493784 6_2:-9071361 None:intergenic
TTCTCGTATGCATCTGAAGC+AGG 0.495588 6_2:+9071222 Msa0908080:CDS
TCTACAAATGACTCATAGTA+AGG 0.497248 6_2:+9071380 Msa0908080:CDS
GTGAAACCGTGTCCAATAAG+AGG 0.498058 6_2:-9069660 None:intergenic
CTAACATAACATAAATGAAA+AGG 0.498116 6_2:-9069527 None:intergenic
AGCAGGACAGTGGGAGAGGT+GGG 0.498367 6_2:-9072591 None:intergenic
GGCATCCAGGGACAGAAAAT+GGG 0.498531 6_2:-9071433 None:intergenic
TTCGCACCTCAACCAGAAAG+AGG 0.501967 6_2:-9072674 None:intergenic
GGTACAAAATTTGTGTAAGC+AGG 0.502492 6_2:-9072608 None:intergenic
TTTCTGGTTGAGGTGCGAAT+GGG 0.505383 6_2:+9072678 Msa0908080:three_prime_UTR
CTTTGTCGTCTAATTATCCC+CGG 0.508426 6_2:+9072870 Msa0908080:three_prime_UTR
TATTGAAAGTATTGCAGGAA+TGG 0.510575 6_2:+9072175 Msa0908080:three_prime_UTR
ATGGCTCCACGCAAAGTTTG+AGG 0.512943 6_2:-9073052 None:intergenic
CAAATGACTCATAGTAAGGA+TGG 0.513548 6_2:+9071384 Msa0908080:CDS
GAATGGCTGCTTATGTTACA+AGG 0.515412 6_2:+9072503 Msa0908080:three_prime_UTR
AATATGGCCATATTATTGTC+GGG 0.515586 6_2:+9072230 Msa0908080:three_prime_UTR
TAAATATACCTGTGGTTGAT+GGG 0.521899 6_2:-9070002 None:intergenic
TTGAGGATTTCATGCTTCAA+AGG 0.523800 6_2:+9071099 Msa0908080:CDS
TGAGCAAGCTAATGATAATG+AGG 0.525092 6_2:+9072412 Msa0908080:three_prime_UTR
TATCCAAGATCAAACCTTTG+AGG 0.525924 6_2:+9071082 Msa0908080:CDS
CCAGCACCATAAAATGGGAT+TGG 0.525969 6_2:-9072384 None:intergenic
CTTCCACACGGCATTTGTCA+TGG 0.526348 6_2:+9070217 Msa0908080:CDS
GCTTCAGATGCATACGAGAA+TGG 0.526668 6_2:-9071219 None:intergenic
GAGGAGATGATGCAAGTGCC+AGG 0.526955 6_2:+9069457 Msa0908080:five_prime_UTR
GGTAAAATTGTGGGAGTCGT+CGG 0.527764 6_2:-9071351 None:intergenic
CTGTTGGACTAGAGGAGAGT+GGG 0.530623 6_2:+9071181 Msa0908080:CDS
GAAGCAGGGCTAATTGGTTG+AGG 0.530888 6_2:+9071145 Msa0908080:CDS
TACGTTGATTTGCATGGCGA+TGG 0.536563 6_2:+9072840 Msa0908080:three_prime_UTR
AAATTGTAGATTGATTCAAA+TGG 0.541553 6_2:+9072899 Msa0908080:three_prime_UTR
TGTAAGCAGGACAGTGGGAG+AGG 0.541874 6_2:-9072595 None:intergenic
AGGGCACCTAAAACCTCTGT+TGG 0.544521 6_2:+9071165 Msa0908080:CDS
ATCGGACTGTCGAAATACTT+AGG 0.549044 6_2:+9072019 Msa0908080:three_prime_UTR
AGTTTGTTGTGTATCATGGA+AGG 0.549128 6_2:+9072988 Msa0908080:three_prime_UTR
GAAGAGTACGTTGATTTGCA+TGG 0.549942 6_2:+9072834 Msa0908080:three_prime_UTR
AAGCAGGGCTAATTGGTTGA+GGG 0.550081 6_2:+9071146 Msa0908080:CDS
TCTATGCCTCAAGCTTCAAT+CGG 0.551892 6_2:+9072001 Msa0908080:three_prime_UTR
TGATGAATGCCAAGTATGGA+AGG 0.552942 6_2:-9069600 None:intergenic
TCATCTTTGATCTGTTGCAA+TGG 0.553078 6_2:-9072733 None:intergenic
TTTGTCGTCTAATTATCCCC+GGG 0.554424 6_2:+9072871 Msa0908080:three_prime_UTR
AAGCAGGACAGTGGGAGAGG+TGG 0.556583 6_2:-9072592 None:intergenic
ATATGGTGCTGAAGTTTCAA+AGG 0.559682 6_2:+9071904 Msa0908080:CDS
GGTTGAGGTGCGAATGGGCA+AGG 0.563835 6_2:+9072683 Msa0908080:three_prime_UTR
TATCGTTATTGCGGCATCCA+GGG 0.564738 6_2:-9071445 None:intergenic
CTGTGTAGTTGTGGCTTGTG+AGG 0.565226 6_2:+9073021 Msa0908080:three_prime_UTR
GTTCGTAATCTGTGTAGTTG+TGG 0.565736 6_2:+9073012 Msa0908080:three_prime_UTR
TAAAACCTCTGTTGGACTAG+AGG 0.567446 6_2:+9071173 Msa0908080:CDS
TCTATCATGTTGTTTAACCT+GGG 0.571852 6_2:+9072632 Msa0908080:three_prime_UTR
TTGAAGCATGAAATCCTCAA+AGG 0.573371 6_2:-9071096 None:intergenic
GCAGGACAGTGGGAGAGGTG+GGG 0.574545 6_2:-9072590 None:intergenic
ATCATCATGTCAAGAAGTAG+AGG 0.576608 6_2:+9071314 Msa0908080:CDS
AAATGATAATTCAGGAAGCA+GGG 0.576629 6_2:+9071131 Msa0908080:CDS
CGTCTAATTATCCCCGGGGA+AGG 0.583320 6_2:+9072876 Msa0908080:three_prime_UTR
ATACGAGAATGGCACGTTGT+GGG 0.587563 6_2:-9071208 None:intergenic
CAACAAAGGTATCGTTATTG+CGG 0.587856 6_2:-9071454 None:intergenic
TAGTCTTCAGAAAAGTTAAG+GGG 0.593057 6_2:+9072309 Msa0908080:three_prime_UTR
TTACACATCATTATAATCCG+TGG 0.595663 6_2:+9071967 Msa0908080:three_prime_UTR
ATTATATACAGCTAACAAGA+AGG 0.596078 6_2:+9072151 Msa0908080:three_prime_UTR
TGGGATTGGCCAGATCTCGT+TGG 0.602616 6_2:-9072370 None:intergenic
GTGAATGAGCAGTTGCAGAA+TGG 0.602991 6_2:-9072545 None:intergenic
TTTGCCAAAATGCACCAAGA+AGG 0.609660 6_2:-9072048 None:intergenic
ATCTTGGATACACAAAAGCA+AGG 0.615832 6_2:-9071069 None:intergenic
TCAATTCCTCTTATTGGACA+CGG 0.616417 6_2:+9069654 Msa0908080:five_prime_UTR
TGTAGTTGTGGCTTGTGAGG+TGG 0.623820 6_2:+9073024 Msa0908080:three_prime_UTR
ATTTGTGTAAGCAGGACAGT+GGG 0.625370 6_2:-9072600 None:intergenic
TCTGTTGGACTAGAGGAGAG+TGG 0.626726 6_2:+9071180 Msa0908080:CDS
AAGCGATATGGTAAGACACC+TGG 0.629203 6_2:-9069475 None:intergenic
ATTTGGATAAAGTTTAAAGG+CGG 0.631633 6_2:+9069957 Msa0908080:five_prime_UTR
GAAAAGCAGATGATGTTGCA+AGG 0.634556 6_2:-9071251 None:intergenic
GACAGTCCGATTGAAGCTTG+AGG 0.637429 6_2:-9072007 None:intergenic
ACATTAACAGCCAGGTACAG+AGG 0.638292 6_2:-9071878 None:intergenic
CATACTTACAATATCAACAA+AGG 0.639148 6_2:-9071468 None:intergenic
CATACGAGAATGGCACGTTG+TGG 0.639241 6_2:-9071209 None:intergenic
CATAGAGTGCACACAGACCA+CGG 0.640979 6_2:-9071984 None:intergenic
TCATAGTAAGGATGGAAGTG+AGG 0.641660 6_2:+9071392 Msa0908080:CDS
AGTCTTCAGAAAAGTTAAGG+GGG 0.650666 6_2:+9072310 Msa0908080:three_prime_UTR
AAATTGCAGTCTATCTTCTG+CGG 0.658647 6_2:+9072103 Msa0908080:three_prime_UTR
ATATGATTGGAAGAACAGAC+TGG 0.659799 6_2:+9070280 Msa0908080:CDS
AATTTGTGTAAGCAGGACAG+TGG 0.660849 6_2:-9072601 None:intergenic
TGTATGTGACATCTTCCACA+CGG 0.698973 6_2:+9070205 Msa0908080:CDS
ATCTACAATTTCCTTCCCCG+GGG 0.702008 6_2:-9072887 None:intergenic
TTGTCGTCTAATTATCCCCG+GGG 0.702945 6_2:+9072872 Msa0908080:three_prime_UTR
TGTTGGACTAGAGGAGAGTG+GGG 0.705793 6_2:+9071182 Msa0908080:CDS
ACTCTCCTCTAGTCCAACAG+AGG 0.711106 6_2:-9071178 None:intergenic
GCTCCATGACAAATGCCGTG+TGG 0.755694 6_2:-9070220 None:intergenic
TTGGATACACAAAAGCAAGG+AGG 0.762948 6_2:-9071066 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTACAAAAATTGAAAT+TGG + chr6_2:9072960-9072979 Msa0908080:three_prime_UTR 10.0%
!!! TTTTCATTTATGTTATGTTA+GGG + chr6_2:9069529-9069548 Msa0908080:five_prime_UTR 15.0%
!! AATGAAAATGAAAATTGAAA+AGG - chr6_2:9069704-9069723 None:intergenic 15.0%
!! ATAAGAATAAACAATAAAAG+GGG - chr6_2:9069794-9069813 None:intergenic 15.0%
!! GATAAGAATAAACAATAAAA+GGG - chr6_2:9069795-9069814 None:intergenic 15.0%
!! AGATAAGAATAAACAATAAA+AGG - chr6_2:9069796-9069815 None:intergenic 15.0%
!!! AACAAATATTTTGCTTTAAT+AGG - chr6_2:9070311-9070330 None:intergenic 15.0%
!! TAAAGCAAAATATTTGTTTA+AGG + chr6_2:9070313-9070332 Msa0908080:CDS 15.0%
!! TCAAACGTATTATATATATA+GGG - chr6_2:9070717-9070736 None:intergenic 15.0%
!! TTCAAACGTATTATATATAT+AGG - chr6_2:9070718-9070737 None:intergenic 15.0%
!!! CAAAATTTTTTTCGATATTT+TGG + chr6_2:9071657-9071676 Msa0908080:intron 15.0%
!! ATTTAAGGAAAATAAAATGA+AGG + chr6_2:9071702-9071721 Msa0908080:intron 15.0%
!! TTTAAGGAAAATAAAATGAA+GGG + chr6_2:9071703-9071722 Msa0908080:intron 15.0%
!! AAGATTTAATGTATTCTTAA+AGG + chr6_2:9072286-9072305 Msa0908080:three_prime_UTR 15.0%
!! ATATAAATTCAACATGAATT+AGG - chr6_2:9072447-9072466 None:intergenic 15.0%
!! ATTTATATTGTTCTTAGATT+AGG + chr6_2:9072459-9072478 Msa0908080:three_prime_UTR 15.0%
!! TTAATTAGTCGAAAAATAGT+AGG + chr6_2:9069435-9069454 Msa0908080:five_prime_UTR 20.0%
!! CTAACATAACATAAATGAAA+AGG - chr6_2:9069530-9069549 None:intergenic 20.0%
!!! CTTTTCATTTATGTTATGTT+AGG + chr6_2:9069528-9069547 Msa0908080:five_prime_UTR 20.0%
!! TAAGAATAAACAATAAAAGG+GGG - chr6_2:9069793-9069812 None:intergenic 20.0%
!!! TTAATTCATTTTCTGTAAGT+CGG + chr6_2:9069820-9069839 Msa0908080:intron 20.0%
!! AAATTTAATAATCGTTGAAG+AGG - chr6_2:9070028-9070047 None:intergenic 20.0%
!! ACATAAAACTTTATAGCAAT+GGG - chr6_2:9070071-9070090 None:intergenic 20.0%
!! TACATAAAACTTTATAGCAA+TGG - chr6_2:9070072-9070091 None:intergenic 20.0%
!! TTCTAATATTGATGTTAAGT+AGG - chr6_2:9070418-9070437 None:intergenic 20.0%
!! TTTATAAGAAGACAAATACA+AGG - chr6_2:9071018-9071037 None:intergenic 20.0%
!! TTGTATTTGTCTTCTTATAA+AGG + chr6_2:9071017-9071036 Msa0908080:intron 20.0%
!! TGTATTTGTCTTCTTATAAA+GGG + chr6_2:9071018-9071037 Msa0908080:intron 20.0%
!! TTAAGGAAAATAAAATGAAG+GGG + chr6_2:9071704-9071723 Msa0908080:intron 20.0%
!!! AGTTACATAATATATTGACT+AGG - chr6_2:9071750-9071769 None:intergenic 20.0%
!!! AATTGATTTTTGTCATTGAA+TGG + chr6_2:9072486-9072505 Msa0908080:three_prime_UTR 20.0%
!!! AAATTGTAGATTGATTCAAA+TGG + chr6_2:9072899-9072918 Msa0908080:three_prime_UTR 20.0%
!! AAAAAGGAAAGGATTTTGAA+AGG - chr6_2:9069574-9069593 None:intergenic 25.0%
! TGGATTTGGATAAAGTTTAA+AGG + chr6_2:9069954-9069973 Msa0908080:five_prime_UTR 25.0%
! ATTTGGATAAAGTTTAAAGG+CGG + chr6_2:9069957-9069976 Msa0908080:five_prime_UTR 25.0%
! TTAAAGGCGGTTTAATAAAA+TGG + chr6_2:9069970-9069989 Msa0908080:exon 25.0%
! TTGACAAAACATCATATGAT+TGG + chr6_2:9070267-9070286 Msa0908080:CDS 25.0%
! ATAGTCAAAGTACAATTCTA+AGG + chr6_2:9070487-9070506 Msa0908080:intron 25.0%
! TAATCGTTTATCTTAGTTCA+TGG - chr6_2:9070518-9070537 None:intergenic 25.0%
! CATTCATTAACATTCCTTAT+CGG - chr6_2:9070546-9070565 None:intergenic 25.0%
! AGGAATGTTAATGAATGAAT+TGG + chr6_2:9070549-9070568 Msa0908080:intron 25.0%
! GGAATGTTAATGAATGAATT+GGG + chr6_2:9070550-9070569 Msa0908080:intron 25.0%
! TTATTTATTGTTTCCAGTGT+AGG + chr6_2:9071042-9071061 Msa0908080:intron 25.0%
! TATTTATTGTTTCCAGTGTA+GGG + chr6_2:9071043-9071062 Msa0908080:intron 25.0%
! AGAACTCAAAATGATAATTC+AGG + chr6_2:9071123-9071142 Msa0908080:CDS 25.0%
! CATACTTACAATATCAACAA+AGG - chr6_2:9071471-9071490 None:intergenic 25.0%
! TGTTGTGATATATTTGTGAA+AGG + chr6_2:9071508-9071527 Msa0908080:intron 25.0%
! GTTGTGATATATTTGTGAAA+GGG + chr6_2:9071509-9071528 Msa0908080:intron 25.0%
! TGAACAACAAAACATGTATA+TGG - chr6_2:9071561-9071580 None:intergenic 25.0%
!!! AAACTTTAGGTTGGAATTTA+AGG + chr6_2:9071687-9071706 Msa0908080:intron 25.0%
! TAAGGAAAATAAAATGAAGG+GGG + chr6_2:9071705-9071724 Msa0908080:intron 25.0%
! TATTGTGCAATCAATGTATT+TGG - chr6_2:9071817-9071836 None:intergenic 25.0%
! ATTATATACAGCTAACAAGA+AGG + chr6_2:9072151-9072170 Msa0908080:three_prime_UTR 25.0%
! TTGATTATGTGGAATCAATA+TGG + chr6_2:9072214-9072233 Msa0908080:three_prime_UTR 25.0%
!!! TTAAAGTTTGTTGTGTATCA+TGG + chr6_2:9072984-9073003 Msa0908080:three_prime_UTR 25.0%
ATTAGTCGAAAAATAGTAGG+AGG + chr6_2:9069438-9069457 Msa0908080:five_prime_UTR 30.0%
TATGTTATGTTAGGGTTCTT+CGG + chr6_2:9069537-9069556 Msa0908080:five_prime_UTR 30.0%
GAAGGAAGAAAAAAAAGGAA+AGG - chr6_2:9069585-9069604 None:intergenic 30.0%
GTATGGAAGGAAGAAAAAAA+AGG - chr6_2:9069590-9069609 None:intergenic 30.0%
!!! TTTTTTCTTCCTTCCATACT+TGG + chr6_2:9069591-9069610 Msa0908080:five_prime_UTR 30.0%
ATAATGATGAATGCCAAGTA+TGG - chr6_2:9069607-9069626 None:intergenic 30.0%
TCAACTTCAATTCCTCTTAT+TGG + chr6_2:9069648-9069667 Msa0908080:five_prime_UTR 30.0%
AGCTAGAAAAATAGCACAAA+TGG - chr6_2:9069862-9069881 None:intergenic 30.0%
!! ATTGTTACTGATTTCTGAGT+AGG + chr6_2:9069917-9069936 Msa0908080:intron 30.0%
TAAATATACCTGTGGTTGAT+GGG - chr6_2:9070005-9070024 None:intergenic 30.0%
!! ATGTTCATATTTCTAGTGCT+TGG + chr6_2:9070120-9070139 Msa0908080:intron 30.0%
ACAAATCATCTATGAAGTTG+TGG - chr6_2:9070167-9070186 None:intergenic 30.0%
! GTGTCTAATTTTTCACGAAA+AGG - chr6_2:9070356-9070375 None:intergenic 30.0%
AAAAATTAGACACTGATGTC+AGG + chr6_2:9070363-9070382 Msa0908080:intron 30.0%
AAAATTAGACACTGATGTCA+GGG + chr6_2:9070364-9070383 Msa0908080:intron 30.0%
ACTCAGTGACTATTATCATT+GGG - chr6_2:9070456-9070475 None:intergenic 30.0%
AACTCAGTGACTATTATCAT+TGG - chr6_2:9070457-9070476 None:intergenic 30.0%
AAACGATTACAATTCCGATA+AGG + chr6_2:9070529-9070548 Msa0908080:intron 30.0%
CATTACCGTTAAATTGAATC+TGG + chr6_2:9070632-9070651 Msa0908080:intron 30.0%
AACCACCAGATTCAATTTAA+CGG - chr6_2:9070640-9070659 None:intergenic 30.0%
TAGTATAGTTCTTGTAGAGT+TGG + chr6_2:9070759-9070778 Msa0908080:intron 30.0%
AGTATAGTTCTTGTAGAGTT+GGG + chr6_2:9070760-9070779 Msa0908080:intron 30.0%
! TATCCGAGGAAAATGAATTT+TGG + chr6_2:9070792-9070811 Msa0908080:intron 30.0%
! ATCCGAGGAAAATGAATTTT+GGG + chr6_2:9070793-9070812 Msa0908080:intron 30.0%
AAAATGATAATTCAGGAAGC+AGG + chr6_2:9071130-9071149 Msa0908080:CDS 30.0%
AAATGATAATTCAGGAAGCA+GGG + chr6_2:9071131-9071150 Msa0908080:CDS 30.0%
TTCATGGACTCTTCAAAAAA+TGG + chr6_2:9071271-9071290 Msa0908080:CDS 30.0%
! CAAGAAGTAGAGGAAATTTT+TGG + chr6_2:9071324-9071343 Msa0908080:CDS 30.0%
! AGAGTTTCAGGTAAAATTGT+GGG - chr6_2:9071363-9071382 None:intergenic 30.0%
! TAGAGTTTCAGGTAAAATTG+TGG - chr6_2:9071364-9071383 None:intergenic 30.0%
TCTACAAATGACTCATAGTA+AGG + chr6_2:9071380-9071399 Msa0908080:CDS 30.0%
!! TTTTGGTTGTAGCAAACTTT+AGG + chr6_2:9071674-9071693 Msa0908080:intron 30.0%
AAGGAAAATAAAATGAAGGG+GGG + chr6_2:9071706-9071725 Msa0908080:intron 30.0%
TGCAGATGGAAGATAAAATT+AGG - chr6_2:9071853-9071872 None:intergenic 30.0%
! CATATTTTACATTAACAGCC+AGG - chr6_2:9071889-9071908 None:intergenic 30.0%
CTGGCTGTTAATGTAAAATA+TGG + chr6_2:9071887-9071906 Msa0908080:CDS 30.0%
AAAGGAACTAACTCCATTAT+GGG + chr6_2:9071922-9071941 Msa0908080:CDS 30.0%
TTACACATCATTATAATCCG+TGG + chr6_2:9071967-9071986 Msa0908080:three_prime_UTR 30.0%
! TTGGCAAACTACTACATTTT+TGG + chr6_2:9072063-9072082 Msa0908080:three_prime_UTR 30.0%
!! ATGTGTTTTAAGCTCGATAT+AGG - chr6_2:9072129-9072148 None:intergenic 30.0%
!! AAGGATATTGAAAGTATTGC+AGG + chr6_2:9072170-9072189 Msa0908080:three_prime_UTR 30.0%
!! TATTGAAAGTATTGCAGGAA+TGG + chr6_2:9072175-9072194 Msa0908080:three_prime_UTR 30.0%
CAATATGGCCATATTATTGT+CGG + chr6_2:9072229-9072248 Msa0908080:three_prime_UTR 30.0%
AATATGGCCATATTATTGTC+GGG + chr6_2:9072230-9072249 Msa0908080:three_prime_UTR 30.0%
GTAGTCTTCAGAAAAGTTAA+GGG + chr6_2:9072308-9072327 Msa0908080:three_prime_UTR 30.0%
TAGTCTTCAGAAAAGTTAAG+GGG + chr6_2:9072309-9072328 Msa0908080:three_prime_UTR 30.0%
ACAAGGTTCTATATGAGATT+TGG + chr6_2:9072520-9072539 Msa0908080:three_prime_UTR 30.0%
AGGTTAAACAACATGATAGA+TGG - chr6_2:9072632-9072651 None:intergenic 30.0%
! ATCTATCATGTTGTTTAACC+TGG + chr6_2:9072631-9072650 Msa0908080:three_prime_UTR 30.0%
! TCTATCATGTTGTTTAACCT+GGG + chr6_2:9072632-9072651 Msa0908080:three_prime_UTR 30.0%
! ACTGAATGTTTTGTATGTTG+TGG + chr6_2:9072762-9072781 Msa0908080:three_prime_UTR 30.0%
! CTGAATGTTTTGTATGTTGT+GGG + chr6_2:9072763-9072782 Msa0908080:three_prime_UTR 30.0%
! TGAATGTTTTGTATGTTGTG+GGG + chr6_2:9072764-9072783 Msa0908080:three_prime_UTR 30.0%
TCAATTCCTCTTATTGGACA+CGG + chr6_2:9069654-9069673 Msa0908080:five_prime_UTR 35.0%
AAGGAAAAGAGAGAATTACG+CGG - chr6_2:9069685-9069704 None:intergenic 35.0%
!! TCCTGTTGATTTAGTGGATT+TGG + chr6_2:9069940-9069959 Msa0908080:five_prime_UTR 35.0%
TCCAAATCCACTAAATCAAC+AGG - chr6_2:9069944-9069963 None:intergenic 35.0%
GTAAATATACCTGTGGTTGA+TGG - chr6_2:9070006-9070025 None:intergenic 35.0%
TGAAGAGGTAAATATACCTG+TGG - chr6_2:9070013-9070032 None:intergenic 35.0%
!! CATATTTCTAGTGCTTGGTT+CGG + chr6_2:9070125-9070144 Msa0908080:intron 35.0%
ATATGATTGGAAGAACAGAC+TGG + chr6_2:9070280-9070299 Msa0908080:CDS 35.0%
ATGAATGAATTGGGAAAGTG+AGG + chr6_2:9070559-9070578 Msa0908080:intron 35.0%
TGAATGAATTGGGAAAGTGA+GGG + chr6_2:9070560-9070579 Msa0908080:intron 35.0%
TACCGTTAAATTGAATCTGG+TGG + chr6_2:9070635-9070654 Msa0908080:intron 35.0%
CAATAGATAAGAGTTCTCAC+TGG + chr6_2:9070684-9070703 Msa0908080:intron 35.0%
GTATAGTTCTTGTAGAGTTG+GGG + chr6_2:9070761-9070780 Msa0908080:intron 35.0%
! TCCGAGGAAAATGAATTTTG+GGG + chr6_2:9070794-9070813 Msa0908080:intron 35.0%
! TCCCCAAAATTCATTTTCCT+CGG - chr6_2:9070798-9070817 None:intergenic 35.0%
ATCTTGGATACACAAAAGCA+AGG - chr6_2:9071072-9071091 None:intergenic 35.0%
TATCCAAGATCAAACCTTTG+AGG + chr6_2:9071082-9071101 Msa0908080:CDS 35.0%
AATCCTCAAAGGTTTGATCT+TGG - chr6_2:9071088-9071107 None:intergenic 35.0%
TTGAAGCATGAAATCCTCAA+AGG - chr6_2:9071099-9071118 None:intergenic 35.0%
TTGAGGATTTCATGCTTCAA+AGG + chr6_2:9071099-9071118 Msa0908080:CDS 35.0%
ATCATCATGTCAAGAAGTAG+AGG + chr6_2:9071314-9071333 Msa0908080:CDS 35.0%
TGAGTCATTTGTAGAGTTTC+AGG - chr6_2:9071375-9071394 None:intergenic 35.0%
CAAATGACTCATAGTAAGGA+TGG + chr6_2:9071384-9071403 Msa0908080:CDS 35.0%
!! CAACAAAGGTATCGTTATTG+CGG - chr6_2:9071457-9071476 None:intergenic 35.0%
ATATATCACAACATGCAGAG+AGG - chr6_2:9071501-9071520 None:intergenic 35.0%
GTATATGGTACCCCAAAAAA+AGG - chr6_2:9071546-9071565 None:intergenic 35.0%
AAAATAAAATGAAGGGGGGT+GGG + chr6_2:9071710-9071729 Msa0908080:intron 35.0%
! ATATGGTGCTGAAGTTTCAA+AGG + chr6_2:9071904-9071923 Msa0908080:CDS 35.0%
CAAAGGAACTAACTCCATTA+TGG + chr6_2:9071921-9071940 Msa0908080:CDS 35.0%
! ACTAACTCCATTATGGGTTT+TGG + chr6_2:9071928-9071947 Msa0908080:CDS 35.0%
! CTAACTCCATTATGGGTTTT+GGG + chr6_2:9071929-9071948 Msa0908080:CDS 35.0%
ATGTGTAAAGCCACAATTAG+TGG - chr6_2:9071955-9071974 None:intergenic 35.0%
!! TACTTAGGAAAGTACCTTCT+TGG + chr6_2:9072034-9072053 Msa0908080:three_prime_UTR 35.0%
!! GCAAACTACTACATTTTTGG+CGG + chr6_2:9072066-9072085 Msa0908080:three_prime_UTR 35.0%
AAATTGCAGTCTATCTTCTG+CGG + chr6_2:9072103-9072122 Msa0908080:three_prime_UTR 35.0%
AGTATTGCAGGAATGGTTAA+TGG + chr6_2:9072182-9072201 Msa0908080:three_prime_UTR 35.0%
GGACAAGTATCTTGATTATG+TGG + chr6_2:9072203-9072222 Msa0908080:three_prime_UTR 35.0%
GGTAGTCTTCAGAAAAGTTA+AGG + chr6_2:9072307-9072326 Msa0908080:three_prime_UTR 35.0%
AGTCTTCAGAAAAGTTAAGG+GGG + chr6_2:9072310-9072329 Msa0908080:three_prime_UTR 35.0%
AAAAGTTAAGGGGGTTTGAT+TGG + chr6_2:9072319-9072338 Msa0908080:three_prime_UTR 35.0%
! AGAAATTTTCCAACGAGATC+TGG + chr6_2:9072361-9072380 Msa0908080:three_prime_UTR 35.0%
! TGAGCAAGCTAATGATAATG+AGG + chr6_2:9072412-9072431 Msa0908080:three_prime_UTR 35.0%
GGTACAAAATTTGTGTAAGC+AGG - chr6_2:9072611-9072630 None:intergenic 35.0%
! TGTTCATGAATACTTTTCCC+AGG - chr6_2:9072652-9072671 None:intergenic 35.0%
TTCATGAACAAACCTCTTTC+TGG + chr6_2:9072662-9072681 Msa0908080:three_prime_UTR 35.0%
TCATCTTTGATCTGTTGCAA+TGG - chr6_2:9072736-9072755 None:intergenic 35.0%
!! AGTTTGTTGTGTATCATGGA+AGG + chr6_2:9072988-9073007 Msa0908080:three_prime_UTR 35.0%
GATGATAGACAGAAGCGATA+TGG - chr6_2:9069490-9069509 None:intergenic 40.0%
TGATGAATGCCAAGTATGGA+AGG - chr6_2:9069603-9069622 None:intergenic 40.0%
!! AGTAGGTCCTGTTGATTTAG+TGG + chr6_2:9069934-9069953 Msa0908080:intron 40.0%
!!! TGATTTGTTTTCCTGTCGTC+AGG + chr6_2:9070179-9070198 Msa0908080:intron 40.0%
!! GATTTGTTTTCCTGTCGTCA+GGG + chr6_2:9070180-9070199 Msa0908080:intron 40.0%
TGTATGTGACATCTTCCACA+CGG + chr6_2:9070205-9070224 Msa0908080:CDS 40.0%
ATTTCTTCAGTTCCATTCCC+TGG + chr6_2:9070947-9070966 Msa0908080:intron 40.0%
TGCATTAGCAACAATCACCA+GGG - chr6_2:9070967-9070986 None:intergenic 40.0%
TTGGATACACAAAAGCAAGG+AGG - chr6_2:9071069-9071088 None:intergenic 40.0%
! TCTAGTCCAACAGAGGTTTT+AGG - chr6_2:9071174-9071193 None:intergenic 40.0%
! TAAAACCTCTGTTGGACTAG+AGG + chr6_2:9071173-9071192 Msa0908080:CDS 40.0%
GAAAAGCAGATGATGTTGCA+AGG - chr6_2:9071254-9071273 None:intergenic 40.0%
!! GCAACATCATCTGCTTTTCA+TGG + chr6_2:9071255-9071274 Msa0908080:CDS 40.0%
TCATAGTAAGGATGGAAGTG+AGG + chr6_2:9071392-9071411 Msa0908080:CDS 40.0%
!!! AGATGCGTGCACCTTTTTTT+GGG + chr6_2:9071532-9071551 Msa0908080:intron 40.0%
GGTTGTAGCAAACTTTAGGT+TGG + chr6_2:9071678-9071697 Msa0908080:intron 40.0%
GAAAATAAAATGAAGGGGGG+TGG + chr6_2:9071709-9071728 Msa0908080:intron 40.0%
TCTATGCCTCAAGCTTCAAT+CGG + chr6_2:9072001-9072020 Msa0908080:three_prime_UTR 40.0%
ATCGGACTGTCGAAATACTT+AGG + chr6_2:9072019-9072038 Msa0908080:three_prime_UTR 40.0%
!! AGTACCTTCTTGGTGCATTT+TGG + chr6_2:9072044-9072063 Msa0908080:three_prime_UTR 40.0%
TTTGCCAAAATGCACCAAGA+AGG - chr6_2:9072051-9072070 None:intergenic 40.0%
!!! AACTACTACATTTTTGGCGG+CGG + chr6_2:9072069-9072088 Msa0908080:three_prime_UTR 40.0%
CTGATTGCCCGACAATAATA+TGG - chr6_2:9072240-9072259 None:intergenic 40.0%
! ATCTGGCCAATCCCATTTTA+TGG + chr6_2:9072378-9072397 Msa0908080:three_prime_UTR 40.0%
! CAATCCCATTTTATGGTGCT+GGG + chr6_2:9072385-9072404 Msa0908080:three_prime_UTR 40.0%
!! AATCCCATTTTATGGTGCTG+GGG + chr6_2:9072386-9072405 Msa0908080:three_prime_UTR 40.0%
AAACCCCAGCACCATAAAAT+GGG - chr6_2:9072392-9072411 None:intergenic 40.0%
AAAACCCCAGCACCATAAAA+TGG - chr6_2:9072393-9072412 None:intergenic 40.0%
GAATGGCTGCTTATGTTACA+AGG + chr6_2:9072503-9072522 Msa0908080:three_prime_UTR 40.0%
ATTTGTGTAAGCAGGACAGT+GGG - chr6_2:9072603-9072622 None:intergenic 40.0%
AATTTGTGTAAGCAGGACAG+TGG - chr6_2:9072604-9072623 None:intergenic 40.0%
!! AACAAACCTCTTTCTGGTTG+AGG + chr6_2:9072668-9072687 Msa0908080:three_prime_UTR 40.0%
! ACGTACTCTTCTGCTGATTA+TGG - chr6_2:9072825-9072844 None:intergenic 40.0%
!! GAAGAGTACGTTGATTTGCA+TGG + chr6_2:9072834-9072853 Msa0908080:three_prime_UTR 40.0%
CTTTGTCGTCTAATTATCCC+CGG + chr6_2:9072870-9072889 Msa0908080:three_prime_UTR 40.0%
TTTGTCGTCTAATTATCCCC+GGG + chr6_2:9072871-9072890 Msa0908080:three_prime_UTR 40.0%
AATCTACAATTTCCTTCCCC+GGG - chr6_2:9072891-9072910 None:intergenic 40.0%
CAATCTACAATTTCCTTCCC+CGG - chr6_2:9072892-9072911 None:intergenic 40.0%
GTTCGTAATCTGTGTAGTTG+TGG + chr6_2:9073012-9073031 Msa0908080:three_prime_UTR 40.0%
AAGCGATATGGTAAGACACC+TGG - chr6_2:9069478-9069497 None:intergenic 45.0%
GTGAAACCGTGTCCAATAAG+AGG - chr6_2:9069663-9069682 None:intergenic 45.0%
!! AAAGGGGGCATTTGAGAAAG+TGG - chr6_2:9069778-9069797 None:intergenic 45.0%
! TTTTGTAGCCCATCAACCAC+AGG + chr6_2:9069994-9070013 Msa0908080:CDS 45.0%
GGCATTTGTCATGGAGCAAA+AGG + chr6_2:9070226-9070245 Msa0908080:CDS 45.0%
TTGGGGATTCGTATTATCCG+AGG + chr6_2:9070778-9070797 Msa0908080:intron 45.0%
! CGTCATCAAACATTTGCTGC+AGG - chr6_2:9070852-9070871 None:intergenic 45.0%
TAGCAACAATCACCAGGGAA+TGG - chr6_2:9070962-9070981 None:intergenic 45.0%
CTGCATTAGCAACAATCACC+AGG - chr6_2:9070968-9070987 None:intergenic 45.0%
CTGGTGATTGTTGCTAATGC+AGG + chr6_2:9070966-9070985 Msa0908080:intron 45.0%
ATTCAGGAAGCAGGGCTAAT+TGG + chr6_2:9071139-9071158 Msa0908080:CDS 45.0%
AAGCAGGGCTAATTGGTTGA+GGG + chr6_2:9071146-9071165 Msa0908080:CDS 45.0%
ATACGAGAATGGCACGTTGT+GGG - chr6_2:9071211-9071230 None:intergenic 45.0%
GCTTCAGATGCATACGAGAA+TGG - chr6_2:9071222-9071241 None:intergenic 45.0%
! TTCTCGTATGCATCTGAAGC+AGG + chr6_2:9071222-9071241 Msa0908080:CDS 45.0%
GGTAAAATTGTGGGAGTCGT+CGG - chr6_2:9071354-9071373 None:intergenic 45.0%
!!! TGGAAGTGAGGTTTTGAAGC+TGG + chr6_2:9071404-9071423 Msa0908080:CDS 45.0%
! ATTGTCCCATTTTCTGTCCC+TGG + chr6_2:9071428-9071447 Msa0908080:CDS 45.0%
TATCGTTATTGCGGCATCCA+GGG - chr6_2:9071448-9071467 None:intergenic 45.0%
!!! GAGATGCGTGCACCTTTTTT+TGG + chr6_2:9071531-9071550 Msa0908080:intron 45.0%
!!! GATGCGTGCACCTTTTTTTG+GGG + chr6_2:9071533-9071552 Msa0908080:intron 45.0%
ACATTAACAGCCAGGTACAG+AGG - chr6_2:9071881-9071900 None:intergenic 45.0%
TAGTGGCCCAAAACCCATAA+TGG - chr6_2:9071938-9071957 None:intergenic 45.0%
!!! ACTACTACATTTTTGGCGGC+GGG + chr6_2:9072070-9072089 Msa0908080:three_prime_UTR 45.0%
AGTTAAGGGGGTTTGATTGG+AGG + chr6_2:9072322-9072341 Msa0908080:three_prime_UTR 45.0%
CCAGCACCATAAAATGGGAT+TGG - chr6_2:9072387-9072406 None:intergenic 45.0%
! CCAATCCCATTTTATGGTGC+TGG + chr6_2:9072384-9072403 Msa0908080:three_prime_UTR 45.0%
GTGAATGAGCAGTTGCAGAA+TGG - chr6_2:9072548-9072567 None:intergenic 45.0%
!! TTTCTGGTTGAGGTGCGAAT+GGG + chr6_2:9072678-9072697 Msa0908080:three_prime_UTR 45.0%
!! TACGTTGATTTGCATGGCGA+TGG + chr6_2:9072840-9072859 Msa0908080:three_prime_UTR 45.0%
TTGTCGTCTAATTATCCCCG+GGG + chr6_2:9072872-9072891 Msa0908080:three_prime_UTR 45.0%
ATCTACAATTTCCTTCCCCG+GGG - chr6_2:9072890-9072909 None:intergenic 45.0%
CACATACAAACCCTGACGAC+AGG - chr6_2:9070193-9070212 None:intergenic 50.0%
CTTCCACACGGCATTTGTCA+TGG + chr6_2:9070217-9070236 Msa0908080:CDS 50.0%
TTGGGAAAGTGAGGGAACGA+AGG + chr6_2:9070568-9070587 Msa0908080:intron 50.0%
TGGGAAAGTGAGGGAACGAA+GGG + chr6_2:9070569-9070588 Msa0908080:intron 50.0%
GCAGGTAGTGTTCACAAGCA+CGG - chr6_2:9070834-9070853 None:intergenic 50.0%
GAAGCAGGGCTAATTGGTTG+AGG + chr6_2:9071145-9071164 Msa0908080:CDS 50.0%
! AGGGCACCTAAAACCTCTGT+TGG + chr6_2:9071165-9071184 Msa0908080:CDS 50.0%
ACTCTCCTCTAGTCCAACAG+AGG - chr6_2:9071181-9071200 None:intergenic 50.0%
! TCTGTTGGACTAGAGGAGAG+TGG + chr6_2:9071180-9071199 Msa0908080:CDS 50.0%
! CTGTTGGACTAGAGGAGAGT+GGG + chr6_2:9071181-9071200 Msa0908080:CDS 50.0%
! TGTTGGACTAGAGGAGAGTG+GGG + chr6_2:9071182-9071201 Msa0908080:CDS 50.0%
CATACGAGAATGGCACGTTG+TGG - chr6_2:9071212-9071231 None:intergenic 50.0%
GGCATCCAGGGACAGAAAAT+GGG - chr6_2:9071436-9071455 None:intergenic 50.0%
GTATCGTTATTGCGGCATCC+AGG - chr6_2:9071449-9071468 None:intergenic 50.0%
GTACAGAGGAACACTGCAGA+TGG - chr6_2:9071867-9071886 None:intergenic 50.0%
!!! GGGTTTTGGGCCACTAATTG+TGG + chr6_2:9071942-9071961 Msa0908080:exon 50.0%
CATAGAGTGCACACAGACCA+CGG - chr6_2:9071987-9072006 None:intergenic 50.0%
GACAGTCCGATTGAAGCTTG+AGG - chr6_2:9072010-9072029 None:intergenic 50.0%
TTCGCACCTCAACCAGAAAG+AGG - chr6_2:9072677-9072696 None:intergenic 50.0%
!! CTTTCTGGTTGAGGTGCGAA+TGG + chr6_2:9072677-9072696 Msa0908080:three_prime_UTR 50.0%
! CTGTGTAGTTGTGGCTTGTG+AGG + chr6_2:9073021-9073040 Msa0908080:three_prime_UTR 50.0%
! TGTAGTTGTGGCTTGTGAGG+TGG + chr6_2:9073024-9073043 Msa0908080:three_prime_UTR 50.0%
GAGGAGATGATGCAAGTGCC+AGG + chr6_2:9069457-9069476 Msa0908080:five_prime_UTR 55.0%
GCTCCATGACAAATGCCGTG+TGG - chr6_2:9070223-9070242 None:intergenic 55.0%
GGGAAAGTGAGGGAACGAAG+GGG + chr6_2:9070570-9070589 Msa0908080:intron 55.0%
GGAAAGTGAGGGAACGAAGG+GGG + chr6_2:9070571-9070590 Msa0908080:intron 55.0%
TGAGGGAACGAAGGGGGTTA+TGG + chr6_2:9070577-9070596 Msa0908080:intron 55.0%
GAGGGAACGAAGGGGGTTAT+GGG + chr6_2:9070578-9070597 Msa0908080:intron 55.0%
AGGGAACGAAGGGGGTTATG+GGG + chr6_2:9070579-9070598 Msa0908080:intron 55.0%
AAAGCAAGGAGGCCCTACAC+TGG - chr6_2:9071058-9071077 None:intergenic 55.0%
CGGCATCCAGGGACAGAAAA+TGG - chr6_2:9071437-9071456 None:intergenic 55.0%
CTGCAGTGTTCCTCTGTACC+TGG + chr6_2:9071868-9071887 Msa0908080:intron 55.0%
!! TGGGATTGGCCAGATCTCGT+TGG - chr6_2:9072373-9072392 None:intergenic 55.0%
TGTAAGCAGGACAGTGGGAG+AGG - chr6_2:9072598-9072617 None:intergenic 55.0%
CGTCTAATTATCCCCGGGGA+AGG + chr6_2:9072876-9072895 Msa0908080:three_prime_UTR 55.0%
GAACGAAGGGGGTTATGGGG+TGG + chr6_2:9070582-9070601 Msa0908080:intron 60.0%
AGCAGGACAGTGGGAGAGGT+GGG - chr6_2:9072594-9072613 None:intergenic 60.0%
AAGCAGGACAGTGGGAGAGG+TGG - chr6_2:9072595-9072614 None:intergenic 60.0%
GGTTGAGGTGCGAATGGGCA+AGG + chr6_2:9072683-9072702 Msa0908080:three_prime_UTR 60.0%
GCAGGACAGTGGGAGAGGTG+GGG - chr6_2:9072593-9072612 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 9069429 9073063 9069429 ID=Msa0908080;Name=Msa0908080
chr6_2 mRNA 9069429 9073063 9069429 ID=Msa0908080-mRNA-1;Parent=Msa0908080;Name=Msa0908080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=321|1|1|1|0.6|0.5|6|1105|222
chr6_2 exon 9069429 9069685 9069429 ID=Msa0908080-mRNA-1:exon:2201;Parent=Msa0908080-mRNA-1
chr6_2 exon 9069820 9069833 9069820 ID=Msa0908080-mRNA-1:exon:2202;Parent=Msa0908080-mRNA-1
chr6_2 exon 9069939 9070015 9069939 ID=Msa0908080-mRNA-1:exon:2203;Parent=Msa0908080-mRNA-1
chr6_2 exon 9070201 9070334 9070201 ID=Msa0908080-mRNA-1:exon:2204;Parent=Msa0908080-mRNA-1
chr6_2 exon 9071059 9071481 9071059 ID=Msa0908080-mRNA-1:exon:2205;Parent=Msa0908080-mRNA-1
chr6_2 exon 9071874 9073063 9071874 ID=Msa0908080-mRNA-1:exon:2206;Parent=Msa0908080-mRNA-1
chr6_2 five_prime_UTR 9069429 9069685 9069429 ID=Msa0908080-mRNA-1:five_prime_utr;Parent=Msa0908080-mRNA-1
chr6_2 five_prime_UTR 9069820 9069833 9069820 ID=Msa0908080-mRNA-1:five_prime_utr;Parent=Msa0908080-mRNA-1
chr6_2 five_prime_UTR 9069939 9069988 9069939 ID=Msa0908080-mRNA-1:five_prime_utr;Parent=Msa0908080-mRNA-1
chr6_2 CDS 9069989 9070015 9069989 ID=Msa0908080-mRNA-1:cds;Parent=Msa0908080-mRNA-1
chr6_2 CDS 9070201 9070334 9070201 ID=Msa0908080-mRNA-1:cds;Parent=Msa0908080-mRNA-1
chr6_2 CDS 9071059 9071481 9071059 ID=Msa0908080-mRNA-1:cds;Parent=Msa0908080-mRNA-1
chr6_2 CDS 9071874 9071958 9071874 ID=Msa0908080-mRNA-1:cds;Parent=Msa0908080-mRNA-1
chr6_2 three_prime_UTR 9071959 9073063 9071959 ID=Msa0908080-mRNA-1:three_prime_utr;Parent=Msa0908080-mRNA-1
Gene Sequence

>Msa0908080

ATGGCTTTTGTAGCCCATCAACCACAGGGTTTGTATGTGACATCTTCCACACGGCATTTGTCATGGAGCAAAAGGATGAAATTGAAGCAGTGTTTGACAAAACATCATATGATTGGAAGAACAGACTGGCATCACCTATTAAAGCAAAATATTTGTTTAAGTGTAGGGCCTCCTTGCTTTTGTGTATCCAAGATCAAACCTTTGAGGATTTCATGCTTCAAAGGCAGAACTCAAAATGATAATTCAGGAAGCAGGGCTAATTGGTTGAGGGCACCTAAAACCTCTGTTGGACTAGAGGAGAGTGGGGACACCCACAACGTGCCATTCTCGTATGCATCTGAAGCAGGTGATAACCTTGCAACATCATCTGCTTTTCATGGACTCTTCAAAAAATGGCTGAAAATGTTGCGCACACAATCATCATGTCAAGAAGTAGAGGAAATTTTTGGAAGACCGACGACTCCCACAATTTTACCTGAAACTCTACAAATGACTCATAGTAAGGATGGAAGTGAGGTTTTGAAGCTGGCATTGTCCCATTTTCTGTCCCTGGATGCCGCAATAACGATACCTTTGTTGATATTTGTTCCTCTGTACCTGGCTGTTAATGTAAAATATGGTGCTGAAGTTTCAAAGGAACTAACTCCATTATGGGTTTTGGGCCACTAA
Protein sequence

>Msa0908080

MAFVAHQPQGLYVTSSTRHLSWSKRMKLKQCLTKHHMIGRTDWHHLLKQNICLSVGPPCFCVSKIKPLRISCFKGRTQNDNSGSRANWLRAPKTSVGLEESGDTHNVPFSYASEAGDNLATSSAFHGLFKKWLKMLRTQSSCQEVEEIFGRPTTPTILPETLQMTHSKDGSEVLKLALSHFLSLDAAITIPLLIFVPLYLAVNVKYGAEVSKELTPLWVLGH*