AlfalfaGEDB | Msa0908080

M. sativa cultivar zhongmu-4 / Msa0908080

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908080	XP_003601234.1	97.738	221	5	0	1	221	1	221	3.30e-160	456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018870	Msa0908080	0.806016	1.009319e-49	-8.615850e-47
Msa0081300	Msa0908080	0.801512	8.694325e-49	-8.615850e-47
Msa0112340	Msa0908080	0.830473	2.879063e-55	-8.615850e-47
Msa0176710	Msa0908080	0.824397	8.251190e-54	-8.615850e-47
Msa0188670	Msa0908080	0.807657	4.540923e-50	-8.615850e-47
Msa0192710	Msa0908080	0.801798	7.597937e-49	-8.615850e-47
Msa0308430	Msa0908080	0.802478	5.504087e-49	-8.615850e-47
Msa0464730	Msa0908080	0.801031	1.090585e-48	-8.615850e-47
Msa0474640	Msa0908080	0.807140	5.846303e-50	-8.615850e-47
Msa0508030	Msa0908080	0.802549	5.321458e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908080	MtrunA17_Chr3g0117331	97.738	221	5	0	1	221	1	221	3.04e-164	456
Msa0908080	MtrunA17_Chr4g0058851	59.211	228	85	2	1	221	1	227	2.85e-86	258

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0908080	AT5G63050.1	39.744	234	128	3	1	221	1	234	5.07e-45	153
Msa0908080	AT5G63050.2	38.197	233	117	3	9	221	3	228	3.60e-42	145

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Find 138 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCCAGCACCATAAAA+TGG	0.234882	6_2:-9072390	None:intergenic
AAAATGATAATTCAGGAAGC+AGG	0.451996	6_2:+9071130	Msa0908080:CDS
AAACCCCAGCACCATAAAAT+GGG	0.489534	6_2:-9072389	None:intergenic
AAAGGAACTAACTCCATTAT+GGG	0.335355	6_2:+9071922	Msa0908080:CDS
AAATGATAATTCAGGAAGCA+GGG	0.576629	6_2:+9071131	Msa0908080:CDS
AAATTGCAGTCTATCTTCTG+CGG	0.658647	6_2:+9072103	Msa0908080:three_prime_UTR
AAATTGTAGATTGATTCAAA+TGG	0.541553	6_2:+9072899	Msa0908080:three_prime_UTR
AACAAACCTCTTTCTGGTTG+AGG	0.453914	6_2:+9072668	Msa0908080:three_prime_UTR
AAGATTTAATGTATTCTTAA+AGG	0.192237	6_2:+9072286	Msa0908080:three_prime_UTR
AAGCAGGACAGTGGGAGAGG+TGG	0.556583	6_2:-9072592	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGTCGAAAAATAGTAGG+AGG	+	chr6_2:9069438-9069457	Msa0908080:five_prime_UTR	30.0%
TATGTTATGTTAGGGTTCTT+CGG	+	chr6_2:9069537-9069556	Msa0908080:five_prime_UTR	30.0%
GAAGGAAGAAAAAAAAGGAA+AGG	-	chr6_2:9069585-9069604	None:intergenic	30.0%
GTATGGAAGGAAGAAAAAAA+AGG	-	chr6_2:9069590-9069609	None:intergenic	30.0%
ATAATGATGAATGCCAAGTA+TGG	-	chr6_2:9069607-9069626	None:intergenic	30.0%
TCAACTTCAATTCCTCTTAT+TGG	+	chr6_2:9069648-9069667	Msa0908080:five_prime_UTR	30.0%
AGCTAGAAAAATAGCACAAA+TGG	-	chr6_2:9069862-9069881	None:intergenic	30.0%
TAAATATACCTGTGGTTGAT+GGG	-	chr6_2:9070005-9070024	None:intergenic	30.0%
ACAAATCATCTATGAAGTTG+TGG	-	chr6_2:9070167-9070186	None:intergenic	30.0%
AAAAATTAGACACTGATGTC+AGG	+	chr6_2:9070363-9070382	Msa0908080:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	9069429	9073063	9069429	ID=Msa0908080;Name=Msa0908080
chr6_2	mRNA	9069429	9073063	9069429	ID=Msa0908080-mRNA-1;Parent=Msa0908080;Name=Msa0908080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=321\|1\|1\|1\|0.6\|0.5\|6\|1105\|222
chr6_2	exon	9069429	9069685	9069429	ID=Msa0908080-mRNA-1:exon:2201;Parent=Msa0908080-mRNA-1
chr6_2	exon	9069820	9069833	9069820	ID=Msa0908080-mRNA-1:exon:2202;Parent=Msa0908080-mRNA-1
chr6_2	exon	9069939	9070015	9069939	ID=Msa0908080-mRNA-1:exon:2203;Parent=Msa0908080-mRNA-1
chr6_2	exon	9070201	9070334	9070201	ID=Msa0908080-mRNA-1:exon:2204;Parent=Msa0908080-mRNA-1
chr6_2	exon	9071059	9071481	9071059	ID=Msa0908080-mRNA-1:exon:2205;Parent=Msa0908080-mRNA-1
chr6_2	exon	9071874	9073063	9071874	ID=Msa0908080-mRNA-1:exon:2206;Parent=Msa0908080-mRNA-1
chr6_2	five_prime_UTR	9069429	9069685	9069429	ID=Msa0908080-mRNA-1:five_prime_utr;Parent=Msa0908080-mRNA-1
chr6_2	five_prime_UTR	9069820	9069833	9069820	ID=Msa0908080-mRNA-1:five_prime_utr;Parent=Msa0908080-mRNA-1
chr6_2	five_prime_UTR	9069939	9069988	9069939	ID=Msa0908080-mRNA-1:five_prime_utr;Parent=Msa0908080-mRNA-1
chr6_2	CDS	9069989	9070015	9069989	ID=Msa0908080-mRNA-1:cds;Parent=Msa0908080-mRNA-1
chr6_2	CDS	9070201	9070334	9070201	ID=Msa0908080-mRNA-1:cds;Parent=Msa0908080-mRNA-1
chr6_2	CDS	9071059	9071481	9071059	ID=Msa0908080-mRNA-1:cds;Parent=Msa0908080-mRNA-1
chr6_2	CDS	9071874	9071958	9071874	ID=Msa0908080-mRNA-1:cds;Parent=Msa0908080-mRNA-1
chr6_2	three_prime_UTR	9071959	9073063	9071959	ID=Msa0908080-mRNA-1:three_prime_utr;Parent=Msa0908080-mRNA-1

Gene Sequence

>Msa0908080

ATGGCTTTTGTAGCCCATCAACCACAGGGTTTGTATGTGACATCTTCCACACGGCATTTGTCATGGAGCAAAAGGATGAAATTGAAGCAGTGTTTGACAAAACATCATATGATTGGAAGAACAGACTGGCATCACCTATTAAAGCAAAATATTTGTTTAAGTGTAGGGCCTCCTTGCTTTTGTGTATCCAAGATCAAACCTTTGAGGATTTCATGCTTCAAAGGCAGAACTCAAAATGATAATTCAGGAAGCAGGGCTAATTGGTTGAGGGCACCTAAAACCTCTGTTGGACTAGAGGAGAGTGGGGACACCCACAACGTGCCATTCTCGTATGCATCTGAAGCAGGTGATAACCTTGCAACATCATCTGCTTTTCATGGACTCTTCAAAAAATGGCTGAAAATGTTGCGCACACAATCATCATGTCAAGAAGTAGAGGAAATTTTTGGAAGACCGACGACTCCCACAATTTTACCTGAAACTCTACAAATGACTCATAGTAAGGATGGAAGTGAGGTTTTGAAGCTGGCATTGTCCCATTTTCTGTCCCTGGATGCCGCAATAACGATACCTTTGTTGATATTTGTTCCTCTGTACCTGGCTGTTAATGTAAAATATGGTGCTGAAGTTTCAAAGGAACTAACTCCATTATGGGTTTTGGGCCACTAA

Protein sequence

>Msa0908080

MAFVAHQPQGLYVTSSTRHLSWSKRMKLKQCLTKHHMIGRTDWHHLLKQNICLSVGPPCFCVSKIKPLRISCFKGRTQNDNSGSRANWLRAPKTSVGLEESGDTHNVPFSYASEAGDNLATSSAFHGLFKKWLKMLRTQSSCQEVEEIFGRPTTPTILPETLQMTHSKDGSEVLKLALSHFLSLDAAITIPLLIFVPLYLAVNVKYGAEVSKELTPLWVLGH*