AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0192710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192710 MtrunA17_Chr2g0282181 91.234 308 6 5 1 308 1 287 0.0 561
Msa0192710 MtrunA17_Chr4g0027101 38.433 268 143 4 21 286 3 250 4.65e-52 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192710 AT5G22620.4 43.981 216 110 2 75 289 31 236 4.09e-58 193
Msa0192710 AT5G22620.3 43.981 216 110 2 75 289 31 236 4.09e-58 193
Msa0192710 AT5G22620.6 43.981 216 110 2 75 289 31 236 4.22e-58 194
Msa0192710 AT5G22620.1 43.981 216 110 2 75 289 31 236 5.01e-58 194
Msa0192710 AT5G22620.5 43.981 216 110 2 75 289 31 236 5.01e-58 194
Msa0192710 AT5G22620.2 43.981 216 110 2 75 289 31 236 5.01e-58 194

Find 73 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTTTGCTTCTAATT+TGG 0.164289 2_1:-8530617 Msa0192710:intron
GAGATGAAATGAAAATAATT+TGG 0.269199 2_1:-8532310 Msa0192710:five_prime_UTR
TCTACCATTCATGACAAAAT+TGG 0.307684 2_1:+8530534 None:intergenic
AGCAAACTGCTGAAATTATA+TGG 0.326556 2_1:-8531368 Msa0192710:CDS
ACTTGCACTGCTTTAGGCCT+TGG 0.331082 2_1:-8530320 Msa0192710:CDS
TTCAGCAACCAAGAGATTTC+AGG 0.337173 2_1:+8529626 None:intergenic
CTAACCTTGGCACGAGATAT+TGG 0.340655 2_1:+8531473 None:intergenic
TGATGAAGTGATTAACTCAT+TGG 0.341759 2_1:+8531821 None:intergenic
ACTAATAATGCTTACCTCTC+GGG 0.379397 2_1:+8530296 None:intergenic
GCATTAACTTGCACTGCTTT+AGG 0.388052 2_1:-8530326 Msa0192710:CDS
AAGCAAGCACGGTGTTAGTA+TGG 0.392916 2_1:-8532261 Msa0192710:exon
GGATGCTAAGCAAATATATA+AGG 0.396264 2_1:-8530587 Msa0192710:CDS
GAATGCTGAAAGTAGAATTC+AGG 0.401668 2_1:-8531760 Msa0192710:intron
ATAAGGAGGAATACAGAATC+TGG 0.408630 2_1:-8530570 Msa0192710:CDS
TGCTTCTAATTTGGAGGCAG+TGG 0.409080 2_1:-8530608 Msa0192710:CDS
TTCGAGCATTGCTTCTCCTC+TGG 0.441980 2_1:+8529695 None:intergenic
GGATAGCTGCAAGAGATTGT+TGG 0.443903 2_1:-8530492 Msa0192710:CDS
ATATCTCTCTATCACCTTGA+AGG 0.451579 2_1:-8531300 Msa0192710:CDS
AAGCACGGTGTTAGTATGGC+AGG 0.454438 2_1:-8532257 Msa0192710:exon
TCCCACCGTTGTTGATATCA+AGG 0.457935 2_1:+8529739 None:intergenic
GATATCCTGTACAAGATCTC+TGG 0.459702 2_1:-8530513 Msa0192710:CDS
AGACTCAGTACACTAATCAT+TGG 0.470577 2_1:+8529472 None:intergenic
TTGTCAGTACTAACTGAGGC+TGG 0.472288 2_1:-8531563 Msa0192710:CDS
GAGAAGAAGCGAAGGAGGAG+CGG 0.474449 2_1:+8532171 None:intergenic
CAACACTAGTGAGTGCTTGA+TGG 0.481250 2_1:-8529557 Msa0192710:three_prime_UTR
TCAGTTTGCTTCTAATTTGG+AGG 0.487074 2_1:-8530614 Msa0192710:intron
TTGAGTTAACCTATGGCAGC+AGG 0.491914 2_1:+8532083 None:intergenic
AGAAGAAGCGAAGGAGGAGC+GGG 0.498095 2_1:+8532172 None:intergenic
TAAGGCATGGTCTTAGCACT+TGG 0.512686 2_1:-8531782 Msa0192710:CDS
TGACTCACAAATCAATATTG+AGG 0.513537 2_1:-8530349 Msa0192710:CDS
CAGTGAATGCGGCGAGTGAG+AGG 0.516000 2_1:+8532137 None:intergenic
GACTCACAAATCAATATTGA+GGG 0.516265 2_1:-8530348 Msa0192710:CDS
ACTTCATACCCTGCTGCCAT+AGG 0.523920 2_1:-8532092 Msa0192710:intron
GCTTGCTTCACCTTCTCTTG+TGG 0.524058 2_1:+8532276 None:intergenic
CCATTCATGACAAAATTGGC+TGG 0.527605 2_1:+8530538 None:intergenic
TGTCAGTACTAACTGAGGCT+GGG 0.534843 2_1:-8531562 Msa0192710:CDS
ATATCCTGCCTGAAATCTCT+TGG 0.545845 2_1:-8529634 Msa0192710:exon
TTGGTTGCTGAATGCAAGGA+AGG 0.547319 2_1:-8529615 Msa0192710:three_prime_UTR
AGTGAATCAGTGTAAACCAA+TGG 0.551565 2_1:+8531330 None:intergenic
ATGCTTACCTCTCGGGGCCA+AGG 0.558444 2_1:+8530303 None:intergenic
GAAAGTAGAACCACAAGAGA+AGG 0.559878 2_1:-8532286 Msa0192710:five_prime_UTR
GTCAGTACTAACTGAGGCTG+GGG 0.566390 2_1:-8531561 Msa0192710:CDS
TCTCTTGGTTGCTGAATGCA+AGG 0.566644 2_1:-8529619 Msa0192710:three_prime_UTR
AGTACTAACTGAGGCTGGGG+TGG 0.571281 2_1:-8531558 Msa0192710:CDS
AGCACGGTGTTAGTATGGCA+GGG 0.576311 2_1:-8532256 Msa0192710:exon
TGCGGCGAGTGAGAGGAAGA+TGG 0.577745 2_1:+8532144 None:intergenic
ATGGAGCTGAGAAGAAGCGA+AGG 0.586294 2_1:+8532163 None:intergenic
AGAGAGATGCAAGAAAGCAT+TGG 0.588842 2_1:-8531528 Msa0192710:CDS
GAGCTGAGAAGAAGCGAAGG+AGG 0.593039 2_1:+8532166 None:intergenic
GCTATCCAGAGATCTTGTAC+AGG 0.594243 2_1:+8530508 None:intergenic
AAGAGAAGGTGAAGCAAGCA+CGG 0.595444 2_1:-8532272 Msa0192710:five_prime_UTR
ACTGCTGAAATTATATGGCA+AGG 0.595942 2_1:-8531363 Msa0192710:CDS
GCACGGTGTTAGTATGGCAG+GGG 0.601938 2_1:-8532255 Msa0192710:exon
CCCTTGATATCAACAACGGT+GGG 0.602416 2_1:-8529740 Msa0192710:CDS
CTAATAATGCTTACCTCTCG+GGG 0.611994 2_1:+8530297 None:intergenic
GGCAACTCATACAGAAGCTG+AGG 0.612162 2_1:-8529536 Msa0192710:three_prime_UTR
CAGTCCAATATCTCGTGCCA+AGG 0.616021 2_1:-8531477 Msa0192710:intron
ATATTGGACTGGCAAGACAT+TGG 0.617224 2_1:+8531489 None:intergenic
CGTTCCCTTGATATCAACAA+CGG 0.619427 2_1:-8529744 Msa0192710:CDS
TGCTAAGCAAATATATAAGG+AGG 0.624637 2_1:-8530584 Msa0192710:CDS
CCCACCGTTGTTGATATCAA+GGG 0.631670 2_1:+8529740 None:intergenic
TCCCTTGATATCAACAACGG+TGG 0.632999 2_1:-8529741 Msa0192710:CDS
GAAATAGTCAGACATGGTGA+TGG 0.635078 2_1:+8532194 None:intergenic
GCAACCAAGAGATTTCAGGC+AGG 0.642711 2_1:+8529630 None:intergenic
CTTTAGGCCTTGGCCCCGAG+AGG 0.643406 2_1:-8530310 Msa0192710:intron
TGAGTTAACCTATGGCAGCA+GGG 0.655476 2_1:+8532084 None:intergenic
CTTGGCACGAGATATTGGAC+TGG 0.659086 2_1:+8531478 None:intergenic
TAGAAGTTGAGCAGTGAATG+CGG 0.662780 2_1:+8532126 None:intergenic
AGCTGCAAGAGATTGTTGGA+AGG 0.663605 2_1:-8530488 Msa0192710:CDS
GAGCGGGAAATAGTCAGACA+TGG 0.675401 2_1:+8532188 None:intergenic
AGATTTGTCAGTACTAACTG+AGG 0.717407 2_1:-8531567 Msa0192710:CDS
GTATTCAACTTCAACACCAG+AGG 0.718413 2_1:-8529711 Msa0192710:CDS
TGGTTGTGAGCACAACAAAG+TGG 0.749709 2_1:+8532214 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAGAATAAACATGA+AGG + chr2_1:8529593-8529612 None:intergenic 15.0%
!!! ACTATTATTTTATAGTTAAC+TGG - chr2_1:8530433-8530452 Msa0192710:intron 15.0%
!!! GATAGATTTTATATAGTTTA+AGG + chr2_1:8530556-8530575 None:intergenic 15.0%
!! ACTATATTTATATAGTTTAG+AGG - chr2_1:8530674-8530693 Msa0192710:intron 15.0%
!! GAGATGAAATGAAAATAATT+TGG - chr2_1:8529305-8529324 Msa0192710:three_prime_UTR 20.0%
!! TTCTTTAAATTGAATAAGTG+AGG - chr2_1:8529602-8529621 Msa0192710:three_prime_UTR 20.0%
!! ACAGAAAAATCAATACTATT+TGG + chr2_1:8529730-8529749 None:intergenic 20.0%
!! ATCAATTTAATGACAATGAA+TGG + chr2_1:8530007-8530026 None:intergenic 20.0%
!! TAAATTGATCATATGTGTTT+AGG - chr2_1:8530018-8530037 Msa0192710:intron 20.0%
!! AAATTGATCATATGTGTTTA+GGG - chr2_1:8530019-8530038 Msa0192710:intron 20.0%
!! TGATAGTCAATTTATTTAAC+TGG - chr2_1:8530207-8530226 Msa0192710:intron 20.0%
!!! TCAATTTATTTAACTGGTTT+TGG - chr2_1:8530213-8530232 Msa0192710:intron 20.0%
!! ATATAGTTTAAGGACTAAAT+TGG + chr2_1:8530546-8530565 None:intergenic 20.0%
!! ACAGATTTGTATATACTTTA+AGG + chr2_1:8530587-8530606 None:intergenic 20.0%
!! TTTACATTTCATATACCATA+AGG - chr2_1:8530644-8530663 Msa0192710:intron 20.0%
!! AATATAGTAAATAGTCCTTA+TGG + chr2_1:8530662-8530681 None:intergenic 20.0%
!!! GACTAAATTGATGATTTATT+TGG - chr2_1:8530726-8530745 Msa0192710:intron 20.0%
!! CTATAGTTTAATCATAAAGA+AGG + chr2_1:8530810-8530829 None:intergenic 20.0%
!! CTTCTTTATGATTAAACTAT+AGG - chr2_1:8530808-8530827 Msa0192710:intron 20.0%
!!! TATTTTTACAATAGTATTCC+AGG - chr2_1:8531402-8531421 Msa0192710:intron 20.0%
!! TAGAACATTGAAGTTATAAA+TGG + chr2_1:8531471-8531490 None:intergenic 20.0%
!! AAAACCAATGTTTAAAAAAC+TGG + chr2_1:8531706-8531725 None:intergenic 20.0%
! TTTAAATTGAATAAGTGAGG+AGG - chr2_1:8529605-8529624 Msa0192710:three_prime_UTR 25.0%
! GACTATTTGTAAAGAAATAC+TGG - chr2_1:8529627-8529646 Msa0192710:exon 25.0%
!!! AGTATTGATTTTTCTGTAAC+TGG - chr2_1:8529733-8529752 Msa0192710:CDS 25.0%
!!! TTTTGTTTTGATGTTTCACA+TGG - chr2_1:8529960-8529979 Msa0192710:intron 25.0%
! TAGTTTAGGGACTAAATTTA+TGG + chr2_1:8530512-8530531 None:intergenic 25.0%
!! AAATCAGTTTGCTTCTAATT+TGG - chr2_1:8530998-8531017 Msa0192710:intron 25.0%
! CATTGAAGTTATAAATGGTA+CGG + chr2_1:8531466-8531485 None:intergenic 25.0%
! CTGGAATCTTTATCAAAAAA+TGG + chr2_1:8531495-8531514 None:intergenic 25.0%
!! TTTTTGATAAAGATTCCAGT+TGG - chr2_1:8531496-8531515 Msa0192710:CDS 25.0%
! TTTAAGCAATGTTTCAAAAC+TGG - chr2_1:8531565-8531584 Msa0192710:CDS 25.0%
! CCATTCTATGATAAAAACAA+TGG + chr2_1:8532036-8532055 None:intergenic 25.0%
!!! CCATTGTTTTTATCATAGAA+TGG - chr2_1:8532033-8532052 Msa0192710:intron 25.0%
!!! AAACTCTAAGATTTTGTGTA+GGG - chr2_1:8532220-8532239 Msa0192710:CDS 25.0%
AGTTGAATTGAGTTAACCTA+TGG + chr2_1:8529542-8529561 None:intergenic 30.0%
!! ATTGATTTTTCTGTAACTGG+TGG - chr2_1:8529736-8529755 Msa0192710:CDS 30.0%
TGATGAAGTGATTAACTCAT+TGG + chr2_1:8529797-8529816 None:intergenic 30.0%
! CAAAGAAAGTCACTCTTTTA+AGG - chr2_1:8529815-8529834 Msa0192710:intron 30.0%
AGCAAACTGCTGAAATTATA+TGG - chr2_1:8530247-8530266 Msa0192710:intron 30.0%
! TCTGCTCAACTTTAAAAACA+AGG - chr2_1:8530360-8530379 Msa0192710:CDS 30.0%
AGTTTAAGGACTAAATTGGT+GGG + chr2_1:8530542-8530561 None:intergenic 30.0%
TAGTTTAAGGACTAAATTGG+TGG + chr2_1:8530543-8530562 None:intergenic 30.0%
GTTTAATCATAAAGAAGGAC+AGG + chr2_1:8530805-8530824 None:intergenic 30.0%
ACTTTGCTCTGACTTTAAAT+AGG - chr2_1:8530882-8530901 Msa0192710:intron 30.0%
CTTTGCTCTGACTTTAAATA+GGG - chr2_1:8530883-8530902 Msa0192710:intron 30.0%
GGATGCTAAGCAAATATATA+AGG - chr2_1:8531028-8531047 Msa0192710:intron 30.0%
TGCTAAGCAAATATATAAGG+AGG - chr2_1:8531031-8531050 Msa0192710:intron 30.0%
TCTACCATTCATGACAAAAT+TGG + chr2_1:8531084-8531103 None:intergenic 30.0%
CAATGGCAAAAAAATCTTAC+AGG + chr2_1:8531167-8531186 None:intergenic 30.0%
TGACTCACAAATCAATATTG+AGG - chr2_1:8531266-8531285 Msa0192710:intron 30.0%
GACTCACAAATCAATATTGA+GGG - chr2_1:8531267-8531286 Msa0192710:intron 30.0%
AACTGATCTTGTCTACTTAT+TGG - chr2_1:8531360-8531379 Msa0192710:CDS 30.0%
AACATGAAATTTCTTCTTCC+TGG + chr2_1:8531423-8531442 None:intergenic 30.0%
ACCAATTGAATTAGCTAGTT+CGG - chr2_1:8531679-8531698 Msa0192710:intron 30.0%
! GATAGAGCATCAAATTCAAA+TGG + chr2_1:8531802-8531821 None:intergenic 30.0%
!!! CAAACTCTAAGATTTTGTGT+AGG - chr2_1:8532219-8532238 Msa0192710:CDS 30.0%
ACATTTACTCCAATCCAACA+TGG - chr2_1:8529664-8529683 Msa0192710:CDS 35.0%
CATTTACTCCAATCCAACAT+GGG - chr2_1:8529665-8529684 Msa0192710:CDS 35.0%
!!! AAAGTCACTCTTTTAAGGCA+TGG - chr2_1:8529820-8529839 Msa0192710:intron 35.0%
GAATGCTGAAAGTAGAATTC+AGG - chr2_1:8529855-8529874 Msa0192710:intron 35.0%
CAAAACAAAAACTTCAGTCC+TGG + chr2_1:8529950-8529969 None:intergenic 35.0%
AGATTTGTCAGTACTAACTG+AGG - chr2_1:8530048-8530067 Msa0192710:intron 35.0%
ACTGCTGAAATTATATGGCA+AGG - chr2_1:8530252-8530271 Msa0192710:intron 35.0%
AGTGAATCAGTGTAAACCAA+TGG + chr2_1:8530288-8530307 None:intergenic 35.0%
ATATCTCTCTATCACCTTGA+AGG - chr2_1:8530315-8530334 Msa0192710:CDS 35.0%
CACCTTGAAGGATTGAAAAA+TGG - chr2_1:8530327-8530346 Msa0192710:CDS 35.0%
!! CACCATTTTTCAATCCTTCA+AGG + chr2_1:8530332-8530351 None:intergenic 35.0%
!!! TTTTAAAGTTGAGCAGAGAC+AGG + chr2_1:8530357-8530376 None:intergenic 35.0%
! TAACTGGCATACTTGTTGAT+AGG - chr2_1:8530449-8530468 Msa0192710:intron 35.0%
TCTCTAACATCCTAATAGCA+GGG - chr2_1:8530615-8530634 Msa0192710:intron 35.0%
TAAATTCAGTCCCTGCTATT+AGG + chr2_1:8530628-8530647 None:intergenic 35.0%
TGAAGAGAGAAGGATAGTTT+AGG - chr2_1:8530703-8530722 Msa0192710:intron 35.0%
GAAGAGAGAAGGATAGTTTA+GGG - chr2_1:8530704-8530723 Msa0192710:intron 35.0%
!! AGTCAGAGCAAAGTTTTGTA+TGG + chr2_1:8530876-8530895 None:intergenic 35.0%
GATTAATCGATCCTTGCATA+CGG - chr2_1:8530940-8530959 Msa0192710:intron 35.0%
AATTGAAAACTCCGTATGCA+AGG + chr2_1:8530954-8530973 None:intergenic 35.0%
! TCAGTTTGCTTCTAATTTGG+AGG - chr2_1:8531001-8531020 Msa0192710:intron 35.0%
ATAAGGAGGAATACAGAATC+TGG - chr2_1:8531045-8531064 Msa0192710:intron 35.0%
AAGATTCATCTTACTCTGCA+GGG - chr2_1:8531226-8531245 Msa0192710:intron 35.0%
ACTAATAATGCTTACCTCTC+GGG + chr2_1:8531322-8531341 None:intergenic 35.0%
GACTAATAATGCTTACCTCT+CGG + chr2_1:8531323-8531342 None:intergenic 35.0%
CAACATTTATGACAACCAAC+TGG + chr2_1:8531514-8531533 None:intergenic 35.0%
TGTCAAATGATACCATGATC+AGG - chr2_1:8531536-8531555 Msa0192710:CDS 35.0%
CTTAAAACAACACCTGATCA+TGG + chr2_1:8531551-8531570 None:intergenic 35.0%
GCAATGTTTCAAAACTGGTT+CGG - chr2_1:8531570-8531589 Msa0192710:CDS 35.0%
!! TTTCAAAACTGGTTCGGAAA+TGG - chr2_1:8531576-8531595 Msa0192710:CDS 35.0%
AAATGGAATTGGTGAGACTT+TGG - chr2_1:8531593-8531612 Msa0192710:intron 35.0%
ACCGAACTAGCTAATTCAAT+TGG + chr2_1:8531683-8531702 None:intergenic 35.0%
!!! CGGTCCAGTTTTTTAAACAT+TGG - chr2_1:8531699-8531718 Msa0192710:intron 35.0%
AATGTCAGCTGCTAGAATAT+TGG + chr2_1:8531824-8531843 None:intergenic 35.0%
AGACATTGATCACAATGTTC+AGG - chr2_1:8531845-8531864 Msa0192710:CDS 35.0%
AGACTCAGTACACTAATCAT+TGG + chr2_1:8532146-8532165 None:intergenic 35.0%
GAAAGTAGAACCACAAGAGA+AGG - chr2_1:8529329-8529348 Msa0192710:three_prime_UTR 40.0%
GAAATAGTCAGACATGGTGA+TGG + chr2_1:8529424-8529443 None:intergenic 40.0%
TAGAAGTTGAGCAGTGAATG+CGG + chr2_1:8529492-8529511 None:intergenic 40.0%
AGCTAGCTGATGACATATAG+CGG + chr2_1:8529908-8529927 None:intergenic 40.0%
ATGACAATGAATGGCAGATG+TGG + chr2_1:8529998-8530017 None:intergenic 40.0%
! AGAGAGATGCAAGAAAGCAT+TGG - chr2_1:8530087-8530106 Msa0192710:intron 40.0%
!! ATATTGGACTGGCAAGACAT+TGG + chr2_1:8530129-8530148 None:intergenic 40.0%
GCAAGGAAGAGAAAAACCAT+TGG - chr2_1:8530269-8530288 Msa0192710:intron 40.0%
GTCTCTAACATCCTAATAGC+AGG - chr2_1:8530614-8530633 Msa0192710:intron 40.0%
CCATTCATGACAAAATTGGC+TGG + chr2_1:8531080-8531099 None:intergenic 40.0%
! CCAGCCAATTTTGTCATGAA+TGG - chr2_1:8531077-8531096 Msa0192710:intron 40.0%
GATATCCTGTACAAGATCTC+TGG - chr2_1:8531102-8531121 Msa0192710:intron 40.0%
CTTGCAACACTGTGTATCAA+TGG + chr2_1:8531184-8531203 None:intergenic 40.0%
CAAGATTCATCTTACTCTGC+AGG - chr2_1:8531225-8531244 Msa0192710:intron 40.0%
!! GCATTAACTTGCACTGCTTT+AGG - chr2_1:8531289-8531308 Msa0192710:CDS 40.0%
CTAATAATGCTTACCTCTCG+GGG + chr2_1:8531321-8531340 None:intergenic 40.0%
!! AACTGGTTCGGAAATGGAAT+TGG - chr2_1:8531582-8531601 Msa0192710:intron 40.0%
GATCTAGCCAACCAATGAAA+TGG - chr2_1:8531641-8531660 Msa0192710:intron 40.0%
CAATTGGTTGAATCGAGAAC+CGG + chr2_1:8531667-8531686 None:intergenic 40.0%
CGTTCCCTTGATATCAACAA+CGG - chr2_1:8531871-8531890 Msa0192710:CDS 40.0%
GTATTCAACTTCAACACCAG+AGG - chr2_1:8531904-8531923 Msa0192710:intron 40.0%
ATATCCTGCCTGAAATCTCT+TGG - chr2_1:8531981-8532000 Msa0192710:intron 40.0%
TTCAGCAACCAAGAGATTTC+AGG + chr2_1:8531992-8532011 None:intergenic 40.0%
AAGAGAAGGTGAAGCAAGCA+CGG - chr2_1:8529343-8529362 Msa0192710:three_prime_UTR 45.0%
! AAGCAAGCACGGTGTTAGTA+TGG - chr2_1:8529354-8529373 Msa0192710:three_prime_UTR 45.0%
TGGTTGTGAGCACAACAAAG+TGG + chr2_1:8529404-8529423 None:intergenic 45.0%
TGAGTTAACCTATGGCAGCA+GGG + chr2_1:8529534-8529553 None:intergenic 45.0%
TTGAGTTAACCTATGGCAGC+AGG + chr2_1:8529535-8529554 None:intergenic 45.0%
AACTTCAGCCCATGTTGGAT+TGG + chr2_1:8529676-8529695 None:intergenic 45.0%
! AATCCAACATGGGCTGAAGT+TGG - chr2_1:8529675-8529694 Msa0192710:CDS 45.0%
AAACCAACTTCAGCCCATGT+TGG + chr2_1:8529681-8529700 None:intergenic 45.0%
!!! ATGGGCTGAAGTTGGTTTTG+TGG - chr2_1:8529683-8529702 Msa0192710:CDS 45.0%
! TAAGGCATGGTCTTAGCACT+TGG - chr2_1:8529833-8529852 Msa0192710:intron 45.0%
AACTTCAGTCCTGGAAGCAA+GGG + chr2_1:8529941-8529960 None:intergenic 45.0%
AAACTTCAGTCCTGGAAGCA+AGG + chr2_1:8529942-8529961 None:intergenic 45.0%
TTGTCAGTACTAACTGAGGC+TGG - chr2_1:8530052-8530071 Msa0192710:intron 45.0%
TGTCAGTACTAACTGAGGCT+GGG - chr2_1:8530053-8530072 Msa0192710:intron 45.0%
CTAACCTTGGCACGAGATAT+TGG + chr2_1:8530145-8530164 None:intergenic 45.0%
CAATATCTCGTGCCAAGGTT+AGG - chr2_1:8530143-8530162 Msa0192710:intron 45.0%
! GGTGGGAGTGTGATAGTTTA+GGG + chr2_1:8530525-8530544 None:intergenic 45.0%
! TGGTGGGAGTGTGATAGTTT+AGG + chr2_1:8530526-8530545 None:intergenic 45.0%
! GAGGCTAAGTTGAAGAGAGA+AGG - chr2_1:8530693-8530712 Msa0192710:intron 45.0%
TAGTCCACCGAAATTTGCAC+CGG + chr2_1:8530851-8530870 None:intergenic 45.0%
CAAGGATCGATTAATCCGAG+GGG + chr2_1:8530936-8530955 None:intergenic 45.0%
GCAAGGATCGATTAATCCGA+GGG + chr2_1:8530937-8530956 None:intergenic 45.0%
TGCAAGGATCGATTAATCCG+AGG + chr2_1:8530938-8530957 None:intergenic 45.0%
TGCTTCTAATTTGGAGGCAG+TGG - chr2_1:8531007-8531026 Msa0192710:intron 45.0%
GCTATCCAGAGATCTTGTAC+AGG + chr2_1:8531110-8531129 None:intergenic 45.0%
GGATAGCTGCAAGAGATTGT+TGG - chr2_1:8531123-8531142 Msa0192710:intron 45.0%
AGCTGCAAGAGATTGTTGGA+AGG - chr2_1:8531127-8531146 Msa0192710:intron 45.0%
CAGCAAGACTGCAATGTAAC+CGG - chr2_1:8531618-8531637 Msa0192710:intron 45.0%
AGCAAGACTGCAATGTAACC+GGG - chr2_1:8531619-8531638 Msa0192710:intron 45.0%
! TTCATTGGTTGGCTAGATCC+CGG + chr2_1:8531640-8531659 None:intergenic 45.0%
TAGCCAACCAATGAAATGGC+CGG - chr2_1:8531645-8531664 Msa0192710:intron 45.0%
GTTCATGCTACACATGCAAG+AGG + chr2_1:8531771-8531790 None:intergenic 45.0%
TCCCTTGATATCAACAACGG+TGG - chr2_1:8531874-8531893 Msa0192710:CDS 45.0%
CCCACCGTTGTTGATATCAA+GGG + chr2_1:8531878-8531897 None:intergenic 45.0%
CCCTTGATATCAACAACGGT+GGG - chr2_1:8531875-8531894 Msa0192710:CDS 45.0%
TCCCACCGTTGTTGATATCA+AGG + chr2_1:8531879-8531898 None:intergenic 45.0%
TCTCTTGGTTGCTGAATGCA+AGG - chr2_1:8531996-8532015 Msa0192710:intron 45.0%
TTGGTTGCTGAATGCAAGGA+AGG - chr2_1:8532000-8532019 Msa0192710:intron 45.0%
CAACACTAGTGAGTGCTTGA+TGG - chr2_1:8532058-8532077 Msa0192710:intron 45.0%
!!! ATATATTTTTAATATGTTTA+TGG - chr2_1:8530386-8530405 Msa0192710:intron 5.0%
!! AATATTTATCAAAAATATTA+AGG + chr2_1:8532178-8532197 None:intergenic 5.0%
GCTTGCTTCACCTTCTCTTG+TGG + chr2_1:8529342-8529361 None:intergenic 50.0%
! AAGCACGGTGTTAGTATGGC+AGG - chr2_1:8529358-8529377 Msa0192710:three_prime_UTR 50.0%
! AGCACGGTGTTAGTATGGCA+GGG - chr2_1:8529359-8529378 Msa0192710:three_prime_UTR 50.0%
GAGCGGGAAATAGTCAGACA+TGG + chr2_1:8529430-8529449 None:intergenic 50.0%
ATGGAGCTGAGAAGAAGCGA+AGG + chr2_1:8529455-8529474 None:intergenic 50.0%
ACTTCATACCCTGCTGCCAT+AGG - chr2_1:8529523-8529542 Msa0192710:three_prime_UTR 50.0%
ATCCGTTATCCCTTGCTTCC+AGG - chr2_1:8529929-8529948 Msa0192710:intron 50.0%
GTCCTGGAAGCAAGGGATAA+CGG + chr2_1:8529934-8529953 None:intergenic 50.0%
GTCAGTACTAACTGAGGCTG+GGG - chr2_1:8530054-8530073 Msa0192710:intron 50.0%
CTTGGCACGAGATATTGGAC+TGG + chr2_1:8530140-8530159 None:intergenic 50.0%
CAGTCCAATATCTCGTGCCA+AGG - chr2_1:8530138-8530157 Msa0192710:intron 50.0%
ATTTCACCGCTGCCTAACCT+TGG + chr2_1:8530158-8530177 None:intergenic 50.0%
ATTCCCCCCGGTGCAAATTT+CGG - chr2_1:8530841-8530860 Msa0192710:intron 50.0%
AGTCCACCGAAATTTGCACC+GGG + chr2_1:8530850-8530869 None:intergenic 50.0%
! ACTTGCACTGCTTTAGGCCT+TGG - chr2_1:8531295-8531314 Msa0192710:CDS 50.0%
GAACCGGCCATTTCATTGGT+TGG + chr2_1:8531651-8531670 None:intergenic 50.0%
TCGAGAACCGGCCATTTCAT+TGG + chr2_1:8531655-8531674 None:intergenic 50.0%
! TTCGAGCATTGCTTCTCCTC+TGG + chr2_1:8531923-8531942 None:intergenic 50.0%
GCAACCAAGAGATTTCAGGC+AGG + chr2_1:8531988-8532007 None:intergenic 50.0%
GGCAACTCATACAGAAGCTG+AGG - chr2_1:8532079-8532098 Msa0192710:intron 50.0%
! GCACGGTGTTAGTATGGCAG+GGG - chr2_1:8529360-8529379 Msa0192710:three_prime_UTR 55.0%
AGAAGAAGCGAAGGAGGAGC+GGG + chr2_1:8529446-8529465 None:intergenic 55.0%
GAGAAGAAGCGAAGGAGGAG+CGG + chr2_1:8529447-8529466 None:intergenic 55.0%
GAGCTGAGAAGAAGCGAAGG+AGG + chr2_1:8529452-8529471 None:intergenic 55.0%
AGTACTAACTGAGGCTGGGG+TGG - chr2_1:8530057-8530076 Msa0192710:intron 55.0%
GGTCTAAGTTCGATTCCCCC+CGG - chr2_1:8530829-8530848 Msa0192710:intron 55.0%
TCCACCGAAATTTGCACCGG+GGG + chr2_1:8530848-8530867 None:intergenic 55.0%
GTCCACCGAAATTTGCACCG+GGG + chr2_1:8530849-8530868 None:intergenic 55.0%
ATAGGGCTCCCGCAAGTAGA+CGG - chr2_1:8530900-8530919 Msa0192710:intron 55.0%
CAATCCCACCGTCTACTTGC+GGG + chr2_1:8530911-8530930 None:intergenic 55.0%
CCAATCCCACCGTCTACTTG+CGG + chr2_1:8530912-8530931 None:intergenic 55.0%
TGCGGCGAGTGAGAGGAAGA+TGG + chr2_1:8529474-8529493 None:intergenic 60.0%
CAGTGAATGCGGCGAGTGAG+AGG + chr2_1:8529481-8529500 None:intergenic 60.0%
CTCGTGCCAAGGTTAGGCAG+CGG - chr2_1:8530149-8530168 Msa0192710:intron 60.0%
CCACCGAAATTTGCACCGGG+GGG + chr2_1:8530847-8530866 None:intergenic 60.0%
CCGCAAGTAGACGGTGGGAT+TGG - chr2_1:8530909-8530928 Msa0192710:intron 60.0%
ATGCTTACCTCTCGGGGCCA+AGG + chr2_1:8531315-8531334 None:intergenic 60.0%
CCCCCCGGTGCAAATTTCGG+TGG - chr2_1:8530844-8530863 Msa0192710:intron 65.0%
GGCTCCCGCAAGTAGACGGT+GGG - chr2_1:8530904-8530923 Msa0192710:intron 65.0%
GACGGTGGGATTGGACCCCT+CGG - chr2_1:8530918-8530937 Msa0192710:intron 65.0%
CTTTAGGCCTTGGCCCCGAG+AGG - chr2_1:8531305-8531324 Msa0192710:CDS 65.0%
GGGCTCCCGCAAGTAGACGG+TGG - chr2_1:8530903-8530922 Msa0192710:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 8529303 8532334 8529303 ID=Msa0192710;Name=Msa0192710
chr2_1 mRNA 8529303 8532334 8529303 ID=Msa0192710-mRNA-1;Parent=Msa0192710;Name=Msa0192710-mRNA-1;_AED=0.17;_eAED=0.17;_QI=70|0.83|0.71|1|1|1|7|341|308
chr2_1 exon 8529303 8529770 8529303 ID=Msa0192710-mRNA-1:exon:3970;Parent=Msa0192710-mRNA-1
chr2_1 exon 8530311 8530390 8530311 ID=Msa0192710-mRNA-1:exon:3969;Parent=Msa0192710-mRNA-1
chr2_1 exon 8530471 8530632 8530471 ID=Msa0192710-mRNA-1:exon:3968;Parent=Msa0192710-mRNA-1
chr2_1 exon 8531281 8531388 8531281 ID=Msa0192710-mRNA-1:exon:3967;Parent=Msa0192710-mRNA-1
chr2_1 exon 8531478 8531597 8531478 ID=Msa0192710-mRNA-1:exon:3966;Parent=Msa0192710-mRNA-1
chr2_1 exon 8531761 8531918 8531761 ID=Msa0192710-mRNA-1:exon:3965;Parent=Msa0192710-mRNA-1
chr2_1 exon 8532093 8532334 8532093 ID=Msa0192710-mRNA-1:exon:3964;Parent=Msa0192710-mRNA-1
chr2_1 five_prime_UTR 8532265 8532334 8532265 ID=Msa0192710-mRNA-1:five_prime_utr;Parent=Msa0192710-mRNA-1
chr2_1 CDS 8532093 8532264 8532093 ID=Msa0192710-mRNA-1:cds;Parent=Msa0192710-mRNA-1
chr2_1 CDS 8531761 8531918 8531761 ID=Msa0192710-mRNA-1:cds;Parent=Msa0192710-mRNA-1
chr2_1 CDS 8531478 8531597 8531478 ID=Msa0192710-mRNA-1:cds;Parent=Msa0192710-mRNA-1
chr2_1 CDS 8531281 8531388 8531281 ID=Msa0192710-mRNA-1:cds;Parent=Msa0192710-mRNA-1
chr2_1 CDS 8530471 8530632 8530471 ID=Msa0192710-mRNA-1:cds;Parent=Msa0192710-mRNA-1
chr2_1 CDS 8530311 8530390 8530311 ID=Msa0192710-mRNA-1:cds;Parent=Msa0192710-mRNA-1
chr2_1 CDS 8529644 8529770 8529644 ID=Msa0192710-mRNA-1:cds;Parent=Msa0192710-mRNA-1
chr2_1 three_prime_UTR 8529303 8529643 8529303 ID=Msa0192710-mRNA-1:three_prime_utr;Parent=Msa0192710-mRNA-1
Gene Sequence

>Msa0192710

ATGGCAGGGGCTGTTGTGTTTTTGAACACCACTTTGTTGTGCTCACAACCATCACCATGTCTGACTATTTCCCGCTCCTCCTTCGCTTCTTCTCAGCTCCATCTTCCTCTCACTCGCCGCATTCACTGCTCAACTTCTACTTCTACTTCTACTTCATACCCTGCTGCCATAGACAAACTTCCAAATAGTATTGATTTTTCTGTAACTGGTGGTGCATATGATTTCACAAAAGCAACAACATCACTAACCAATGAGTTAATCACTTCATCAAAGAAAGTCACTCTTTTAAGGCATGGTCTTAGCACTTGGAATGCTGAAAGTAGAATTCAGGGAAGCTCAGATTTGTCAGTACTAACTGAGGCTGGGGTGGAGCAAGCAGAGAGATGCAAGAAAGCATTGGAAAATATTCACTTTGACCAATGTCTTGCCAGTCCAATATCTCGTGCCAAGCAAACTGCTGAAATTATATGGCAAGGAAGAGAAAAACCATTGGTTTACACTGATTCACTTAAAGAAATATCTCTCTATCACCTTGAAGGATTGAAAAATGGTGAGCCTTTTGCTTCTAATTTGGAGGCAGTGGATGCTAAGCAAATATATAAGGAGGAATACAGAATCTGGAGAGAAGATCCAGCCAATTTTGTCATGAATGGTAGATATCCTGTACAAGATCTCTGGATAGCTGCAAGAGATTGTTGGAAGGAAATTTTGTTGTCACCTGGAGAAAGCTTTCTAGTTGTGACTCACAAATCAATATTGAGGGCATTAACTTGCACTGCTTTAGGCCTTGGCCCCGAGAGGTTTCGTTCCCTTGATATCAACAACGGTGGGATATGCGTATTCAACTTCAACACCAGAGGAGAAGCAATGCTCGAAGCTTTAAACTTGACAGCTCACATGTATAGCGATCATGTATATCCTGCCTGA

Protein sequence

>Msa0192710

MAGAVVFLNTTLLCSQPSPCLTISRSSFASSQLHLPLTRRIHCSTSTSTSTSYPAAIDKLPNSIDFSVTGGAYDFTKATTSLTNELITSSKKVTLLRHGLSTWNAESRIQGSSDLSVLTEAGVEQAERCKKALENIHFDQCLASPISRAKQTAEIIWQGREKPLVYTDSLKEISLYHLEGLKNGEPFASNLEAVDAKQIYKEEYRIWREDPANFVMNGRYPVQDLWIAARDCWKEILLSPGESFLVVTHKSILRALTCTALGLGPERFRSLDINNGGICVFNFNTRGEAMLEALNLTAHMYSDHVYPA*