AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1199210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199210 MtrunA17_Chr8g0369031 90.637 267 23 1 1 265 1 267 8.48e-146 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1199210 AT5G44650.1 71.910 178 48 2 89 265 104 280 6.20e-87 260

Find 60 sgRNAs with CRISPR-Local

Find 397 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTTTCCCTGTTATTAT+AGG 0.272827 8_1:-51126128 Msa1199210:CDS
GAAATTGAAGGAAGTGTTAA+TGG 0.309366 8_1:+51132167 None:intergenic
ACAGAAATACCTATAATAAC+AGG 0.315661 8_1:+51126119 None:intergenic
TTCAACCATACCTCTAAATT+AGG 0.317527 8_1:+51129179 None:intergenic
TAACTAGGTCGTCTCTTGTT+GGG 0.347526 8_1:+51129873 None:intergenic
TCTGGGATCCTCAATCATTA+TGG 0.357646 8_1:+51129940 None:intergenic
CCTTGTAGTGTGCTCCTCTT+AGG 0.361077 8_1:-51125913 Msa1199210:three_prime_UTR
AAAACAGGGACATGTTGTTT+GGG 0.385929 8_1:-51131789 Msa1199210:CDS
TGCTCCTCTTAGGATGTGTT+TGG 0.391876 8_1:-51125903 Msa1199210:three_prime_UTR
TCATTTCCTCAGCAAGCATC+TGG 0.399823 8_1:+51129210 None:intergenic
TGGAGAACAGCTCTATCCTT+TGG 0.408900 8_1:+51129230 None:intergenic
GACCGCATGGCCTAATTTAG+AGG 0.414053 8_1:-51129189 Msa1199210:intron
AAAATGTTGCTGAAATCAAA+AGG 0.421552 8_1:-51131905 Msa1199210:CDS
AGACGACCTAGTTACTGCTT+TGG 0.421764 8_1:-51129864 Msa1199210:CDS
CAAAGAGACTAAACATTGAC+TGG 0.428498 8_1:-51127520 Msa1199210:CDS
GTAACTAGGTCGTCTCTTGT+TGG 0.444226 8_1:+51129872 None:intergenic
CTTCTTCCAAAGCAGTAACT+AGG 0.447551 8_1:+51129858 None:intergenic
AGGGAACGAATGAAAGAATT+CGG 0.467403 8_1:+51132048 None:intergenic
AGTGCCATACCAGTTCCTAC+TGG 0.473464 8_1:+51126069 None:intergenic
AGTCTCTTTGCAGCCACTTG+AGG 0.476299 8_1:+51127533 None:intergenic
CAACTCCCTCCAGTAGGAAC+TGG 0.478013 8_1:-51126078 Msa1199210:exon
TGAAAATGAAGATGCTGACT+TGG 0.499046 8_1:-51132021 Msa1199210:CDS
CCTCTTAGGATGTGTTTGGA+TGG 0.500099 8_1:-51125899 None:intergenic
TGAGAACAGCGAAAGGTTGA+AGG 0.503708 8_1:+51132122 None:intergenic
CCATCCAAACACATCCTAAG+AGG 0.508151 8_1:+51125899 None:intergenic
TGGCATTTACTAGGTGAATG+AGG 0.513830 8_1:-51129261 Msa1199210:intron
AAACAACCCTGGATGATGTC+AGG 0.515990 8_1:+51125990 None:intergenic
ATGTTCACCTGACATCATCC+AGG 0.520566 8_1:-51125997 Msa1199210:three_prime_UTR
GGCATTTACTAGGTGAATGA+GGG 0.523119 8_1:-51129260 Msa1199210:intron
AACAGAAGTGCCTTCAGCAT+TGG 0.528354 8_1:-51127456 Msa1199210:intron
AAAACTAACCATAATGATTG+AGG 0.531755 8_1:-51129948 Msa1199210:CDS
AACTAGGTCGTCTCTTGTTG+GGG 0.554479 8_1:+51129874 None:intergenic
CCCTCCAGTAGGAACTGGTA+TGG 0.555617 8_1:-51126073 Msa1199210:exon
CCTAAGAGGAGCACACTACA+AGG 0.559885 8_1:+51125913 None:intergenic
TGAAAGAATTCGGCGATGAG+TGG 0.563266 8_1:+51132058 None:intergenic
AAATGTTGCTGAAATCAAAA+GGG 0.563854 8_1:-51131904 Msa1199210:intron
CTTGGTGAATTGTGTTCCGT+TGG 0.565502 8_1:+51132088 None:intergenic
GATTGTGAAGATGAAATTGA+AGG 0.574175 8_1:+51132155 None:intergenic
CACTGGAATCGATCCTCAAG+TGG 0.582729 8_1:-51127546 Msa1199210:CDS
GAAGGAAGTGTTAATGGCAA+CGG 0.582871 8_1:+51132173 None:intergenic
GCGATGAGTGGTGCTAAGCT+TGG 0.592274 8_1:+51132070 None:intergenic
AGGATCGATTCCAGTGTCAG+TGG 0.595249 8_1:+51127553 None:intergenic
GCCATACCAGTTCCTACTGG+AGG 0.602146 8_1:+51126072 None:intergenic
TCTCACTCTCTCTTTACCAA+CGG 0.610252 8_1:-51132104 Msa1199210:CDS
CAGGGACATGTTGTTTGGGG+AGG 0.610718 8_1:-51131785 Msa1199210:intron
GAAAATGAAGATGCTGACTT+GGG 0.613265 8_1:-51132020 Msa1199210:CDS
GAGAGAGTGAGAACAGCGAA+AGG 0.620164 8_1:+51132115 None:intergenic
AAACAGGGACATGTTGTTTG+GGG 0.623345 8_1:-51131788 Msa1199210:CDS
GAGTCGTTTAGCAATGGCAG+TGG 0.626055 8_1:-51132210 None:intergenic
CAGAAATACCTATAATAACA+GGG 0.629810 8_1:+51126120 None:intergenic
CGAACTAGCTCAAACAACCC+TGG 0.638471 8_1:+51125979 None:intergenic
CCATACCAGTTCCTACTGGA+GGG 0.641464 8_1:+51126073 None:intergenic
GCATTTACTAGGTGAATGAG+GGG 0.641930 8_1:-51129259 Msa1199210:intron
GAATGAGGGGAAAATTCCAA+AGG 0.648884 8_1:-51129246 Msa1199210:CDS
TGTTCACCTGACATCATCCA+GGG 0.655898 8_1:-51125996 Msa1199210:three_prime_UTR
TTGCTGAGGAAATGACCGCA+TGG 0.657890 8_1:-51129202 Msa1199210:CDS
AAGGAACTGACCAATGCTGA+AGG 0.663019 8_1:+51127446 None:intergenic
TGTTCTCCAGATGCTTGCTG+AGG 0.668817 8_1:-51129216 Msa1199210:CDS
AAAGAGACTAAACATTGACT+GGG 0.671069 8_1:-51127519 Msa1199210:CDS
TACCTCTAAATTAGGCCATG+CGG 0.696225 8_1:+51129187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAATTTTTTTTTTCATAAA+AGG + chr8_1:51126762-51126781 None:intergenic 10.0%
!!! ACTTCTTATATTTATTTTAT+GGG - chr8_1:51129868-51129887 Msa1199210:CDS 10.0%
!!! GTAATTTTATATTATAATCA+AGG - chr8_1:51130755-51130774 Msa1199210:intron 10.0%
!! AGAAAATTGGATAAATTATT+AGG + chr8_1:51126366-51126385 None:intergenic 15.0%
!!! TTTTTTCAATTAAGATTACA+AGG - chr8_1:51126560-51126579 Msa1199210:intron 15.0%
!!! TTTTTCAATTAAGATTACAA+GGG - chr8_1:51126561-51126580 Msa1199210:intron 15.0%
!! TTCTACATAAGAATTATTAA+TGG + chr8_1:51126834-51126853 None:intergenic 15.0%
!! AAACTATTAAAAAGATTTAG+AGG + chr8_1:51127130-51127149 None:intergenic 15.0%
!!! TTTAAAATAGTATAATTCGA+AGG - chr8_1:51127967-51127986 Msa1199210:intron 15.0%
!!! AGTTTATTTAAAATCTTGTT+TGG - chr8_1:51128352-51128371 Msa1199210:intron 15.0%
!!! GTTTATTTAAAATCTTGTTT+GGG - chr8_1:51128353-51128372 Msa1199210:intron 15.0%
!! AACATCTAAAAAAAATTGTT+TGG + chr8_1:51129147-51129166 None:intergenic 15.0%
!!! GACTTCTTATATTTATTTTA+TGG - chr8_1:51129867-51129886 Msa1199210:CDS 15.0%
!!! TCAACAATTAAATTGTATTT+TGG - chr8_1:51130172-51130191 Msa1199210:intron 15.0%
!! AATATAAAATTACAGTATCA+TGG + chr8_1:51130748-51130767 None:intergenic 15.0%
!! TGATTATATTAAAAATGTAC+AGG + chr8_1:51130836-51130855 None:intergenic 15.0%
!!! TATAGTTTTTTTAGTTTTTG+TGG - chr8_1:51131880-51131899 Msa1199210:intron 15.0%
!!! ATAGTTTTTTTAGTTTTTGT+GGG - chr8_1:51131881-51131900 Msa1199210:intron 15.0%
!!! ATTTATTTTTCATAAGATCT+TGG + chr8_1:51132159-51132178 None:intergenic 15.0%
!! TCTTATGAAAAATAAATACT+AGG - chr8_1:51132162-51132181 Msa1199210:CDS 15.0%
!! AAAATGCATTACAAAATGAA+GGG + chr8_1:51126256-51126275 None:intergenic 20.0%
!!! CTTTTTAATAGTTTTGTCTA+TGG - chr8_1:51127136-51127155 Msa1199210:intron 20.0%
!! AATTCAATTGCTAAAGATAA+TGG + chr8_1:51127172-51127191 None:intergenic 20.0%
!! GAATGAGGATATATTATTAT+TGG + chr8_1:51127763-51127782 None:intergenic 20.0%
!! CGGTAATAATAAATAACAAT+AGG + chr8_1:51127894-51127913 None:intergenic 20.0%
!!! TTTTGTATGTTTGTAATTTG+CGG + chr8_1:51127914-51127933 None:intergenic 20.0%
!! CAAACATACAAAAGTTTAAT+TGG - chr8_1:51127921-51127940 Msa1199210:intron 20.0%
!! AAGCATAATTTAGATAATCA+GGG + chr8_1:51128286-51128305 None:intergenic 20.0%
!! AAAGCATAATTTAGATAATC+AGG + chr8_1:51128287-51128306 None:intergenic 20.0%
!!! TTTTTAGATGTTCAAAATCA+TGG - chr8_1:51129155-51129174 Msa1199210:intron 20.0%
!! ACAGTTAAATGAATATAACA+AGG + chr8_1:51129217-51129236 None:intergenic 20.0%
!! GTTAACATTATTCAAATATG+TGG + chr8_1:51129257-51129276 None:intergenic 20.0%
!! ACTACATAAATATTGAAGTT+TGG - chr8_1:51129412-51129431 Msa1199210:intron 20.0%
!! CTACATAAATATTGAAGTTT+GGG - chr8_1:51129413-51129432 Msa1199210:intron 20.0%
!! AGAAGTGAGAAAAAAAAAAT+AGG + chr8_1:51129564-51129583 None:intergenic 20.0%
!! CAAATTAAATTCATTTCTTC+AGG - chr8_1:51129716-51129735 Msa1199210:intron 20.0%
!!! TCAAATTTTAAAACTGACAA+TGG + chr8_1:51129838-51129857 None:intergenic 20.0%
!! TGTTAGTTATGTCTAAATTT+AGG - chr8_1:51129910-51129929 Msa1199210:CDS 20.0%
!! AGTAATAAATTGTTAGAAAC+TGG + chr8_1:51130200-51130219 None:intergenic 20.0%
!! AATACAATTCATTATATCAC+TGG + chr8_1:51130376-51130395 None:intergenic 20.0%
!!! AGAAAAATACATTGATAATG+AGG + chr8_1:51130422-51130441 None:intergenic 20.0%
!!! TGCTATTTTATTTTTCCTAA+TGG - chr8_1:51130470-51130489 Msa1199210:intron 20.0%
!!! TTTTATTTTTCCTAATGGAT+AGG - chr8_1:51130475-51130494 Msa1199210:intron 20.0%
!!! TTTGCATATAGAGATTTTTT+GGG + chr8_1:51130524-51130543 None:intergenic 20.0%
!!! TTTTGCATATAGAGATTTTT+TGG + chr8_1:51130525-51130544 None:intergenic 20.0%
!! AATCACAAAAATAATCTACA+AGG + chr8_1:51130684-51130703 None:intergenic 20.0%
!!! TTTTGTGATTTAGCTTTTTT+TGG - chr8_1:51130694-51130713 Msa1199210:intron 20.0%
!! ACAGATTCTATATAAGTTTA+CGG + chr8_1:51130793-51130812 None:intergenic 20.0%
!! ATATTAAAAATGTACAGGTA+CGG + chr8_1:51130831-51130850 None:intergenic 20.0%
!! CTAAAACTATATAGAATATG+AGG + chr8_1:51131034-51131053 None:intergenic 20.0%
!!! CATATTCTATATAGTTTTAG+TGG - chr8_1:51131034-51131053 Msa1199210:intron 20.0%
!! AGTTTACATTTATAAATCTG+AGG + chr8_1:51131471-51131490 None:intergenic 20.0%
!! TCAGATTTATAAATGTAAAC+TGG - chr8_1:51131470-51131489 Msa1199210:intron 20.0%
!!! ATTTTTAAGAACTCAGAAAA+TGG + chr8_1:51131797-51131816 None:intergenic 20.0%
!! AAAAACTATACGTTAAGAAA+AGG + chr8_1:51131870-51131889 None:intergenic 20.0%
! AAAATGTTGCTGAAATCAAA+AGG - chr8_1:51126194-51126213 Msa1199210:intron 25.0%
! AAATGTTGCTGAAATCAAAA+GGG - chr8_1:51126195-51126214 Msa1199210:intron 25.0%
! CAAAATGCATTACAAAATGA+AGG + chr8_1:51126257-51126276 None:intergenic 25.0%
! GAGAAGAAAAAAAGTGAAAA+GGG + chr8_1:51126344-51126363 None:intergenic 25.0%
! CTAATTTCGCATAAGAAAAT+TGG + chr8_1:51126379-51126398 None:intergenic 25.0%
! GTGATTCAATTTGTATTGTT+TGG - chr8_1:51126468-51126487 Msa1199210:intron 25.0%
! TATGACTAAAAAAAACCGTT+TGG + chr8_1:51126694-51126713 None:intergenic 25.0%
! TATGAATCTAGTCATTGAAT+TGG - chr8_1:51126863-51126882 Msa1199210:intron 25.0%
! CCACATGATTTAAATATCTT+AGG + chr8_1:51127605-51127624 None:intergenic 25.0%
! CCTAAGATATTTAAATCATG+TGG - chr8_1:51127602-51127621 Msa1199210:CDS 25.0%
! GAGGATATATTATTATTGGT+TGG + chr8_1:51127759-51127778 None:intergenic 25.0%
!! CTATCTTTTTACATCACTAT+TGG + chr8_1:51127842-51127861 None:intergenic 25.0%
! ATAGTGATGTAAAAAGATAG+CGG - chr8_1:51127842-51127861 Msa1199210:intron 25.0%
! ATTCTACAGAATGTTATTGA+AGG - chr8_1:51128014-51128033 Msa1199210:intron 25.0%
!! TGTTATTGAAGGTGTAATTA+TGG - chr8_1:51128025-51128044 Msa1199210:intron 25.0%
! AAAACTAACCATAATGATTG+AGG - chr8_1:51128151-51128170 Msa1199210:intron 25.0%
! AATTTAGATAATCAGGGATA+TGG + chr8_1:51128280-51128299 None:intergenic 25.0%
!!! TAAATAAACTCTAAAGCTTC+TGG + chr8_1:51128342-51128361 None:intergenic 25.0%
!!! TGAACATTTGGTCATTTTTT+AGG - chr8_1:51128377-51128396 Msa1199210:intron 25.0%
!!! GAACATTTGGTCATTTTTTA+GGG - chr8_1:51128378-51128397 Msa1199210:intron 25.0%
! CAAAAGATTTGAAAAGTTGA+AGG + chr8_1:51128484-51128503 None:intergenic 25.0%
! ATTCTAAATAAATCTCACCA+AGG - chr8_1:51128595-51128614 Msa1199210:intron 25.0%
! TTCTAAATAAATCTCACCAA+GGG - chr8_1:51128596-51128615 Msa1199210:intron 25.0%
! AGTCAATAAAACTAACAGAA+AGG + chr8_1:51128658-51128677 None:intergenic 25.0%
! CAGATTGAAAATAAATGACT+TGG - chr8_1:51128818-51128837 Msa1199210:intron 25.0%
! AATTTCGATGTCAATTTAGA+AGG + chr8_1:51129279-51129298 None:intergenic 25.0%
! ATTGAAAATGTAGTTAGTGA+GGG - chr8_1:51129481-51129500 Msa1199210:intron 25.0%
! GAAAATTTAAGCGACTTAAA+TGG + chr8_1:51129609-51129628 None:intergenic 25.0%
!! TCTACAAGATTTCATGTTTT+CGG + chr8_1:51129742-51129761 None:intergenic 25.0%
!! ATTATGGGATAGTTTTTGAA+TGG - chr8_1:51129962-51129981 Msa1199210:intron 25.0%
! GATGATTCACACATAATTTA+AGG + chr8_1:51130085-51130104 None:intergenic 25.0%
! ATTACACTTACAATAGAGAA+TGG + chr8_1:51130107-51130126 None:intergenic 25.0%
!! ATTATATCACTGGTAATGAA+TGG + chr8_1:51130366-51130385 None:intergenic 25.0%
! TATAATCAAGGAATTTGATG+TGG - chr8_1:51130767-51130786 Msa1199210:intron 25.0%
! AAAGACTTGTATAAGAACTT+AGG - chr8_1:51130890-51130909 Msa1199210:intron 25.0%
! CAAGTACATTGTTAATAAAG+AGG + chr8_1:51130983-51131002 None:intergenic 25.0%
! CTCTTTATTAACAATGTACT+TGG - chr8_1:51130981-51131000 Msa1199210:intron 25.0%
! AAACTATATAGAATATGAGG+AGG + chr8_1:51131031-51131050 None:intergenic 25.0%
! TCAATAACATATTGCAAGAA+TGG + chr8_1:51131311-51131330 None:intergenic 25.0%
! ATTCTTGCAATATGTTATTG+AGG - chr8_1:51131310-51131329 Msa1199210:intron 25.0%
! TTCTTGCAATATGTTATTGA+GGG - chr8_1:51131311-51131330 Msa1199210:intron 25.0%
! TATCAATTCAACGATTTCAA+TGG - chr8_1:51131440-51131459 Msa1199210:intron 25.0%
!! ATAATGGGAATTTATGGTAT+AGG + chr8_1:51131539-51131558 None:intergenic 25.0%
!! TTGAGAATAATGGGAATTTA+TGG + chr8_1:51131545-51131564 None:intergenic 25.0%
! AATCTTTCAAATGAAGTATG+AGG + chr8_1:51131648-51131667 None:intergenic 25.0%
! CAGAAATACCTATAATAACA+GGG + chr8_1:51131982-51132001 None:intergenic 25.0%
! ACAGAAATACCTATAATAAC+AGG + chr8_1:51131983-51132002 None:intergenic 25.0%
!! GAAATTGAAGGAAGTGTTAA+TGG + chr8_1:51125935-51125954 None:intergenic 30.0%
GATTGTGAAGATGAAATTGA+AGG + chr8_1:51125947-51125966 None:intergenic 30.0%
! TGATTTCAGCAACATTTTCA+AGG + chr8_1:51126192-51126211 None:intergenic 30.0%
GGAGAAGAAAAAAAGTGAAA+AGG + chr8_1:51126345-51126364 None:intergenic 30.0%
TAAAAAGATTTAGAGGTCAG+TGG + chr8_1:51127123-51127142 None:intergenic 30.0%
! GTTTTGTCTATGGTTTTTCT+TGG - chr8_1:51127146-51127165 Msa1199210:intron 30.0%
ATGGTTAAATCTCAACTTAG+TGG + chr8_1:51127258-51127277 None:intergenic 30.0%
AACGTCTATTGTAGAAATGA+TGG + chr8_1:51127277-51127296 None:intergenic 30.0%
CATTGTCTTTATTCTGTGTT+GGG - chr8_1:51127388-51127407 Msa1199210:intron 30.0%
TATTTAAATCATGTGGCTTG+TGG - chr8_1:51127609-51127628 Msa1199210:intron 30.0%
! TGGAATGTAAGTTTTGCAAA+AGG + chr8_1:51127644-51127663 None:intergenic 30.0%
TAGTGATGTAAAAAGATAGC+GGG - chr8_1:51127843-51127862 Msa1199210:intron 30.0%
! GTATAATTCGAAGGTGTAAT+TGG - chr8_1:51127976-51127995 Msa1199210:intron 30.0%
! TAGAGCTTTTCAAATCTTGA+TGG + chr8_1:51128064-51128083 None:intergenic 30.0%
ATCAAGATTTGAAAAGCTCT+AGG - chr8_1:51128063-51128082 Msa1199210:intron 30.0%
AAGAATCATTAGATCATCGT+GGG + chr8_1:51128111-51128130 None:intergenic 30.0%
AAAGAATCATTAGATCATCG+TGG + chr8_1:51128112-51128131 None:intergenic 30.0%
TCTTTCTTTATCCTATTTCC+AGG - chr8_1:51128127-51128146 Msa1199210:intron 30.0%
!!! TCATTATGGTTAGTTTTACC+TGG + chr8_1:51128148-51128167 None:intergenic 30.0%
GTTGAGAGAAAAAGATTACT+TGG - chr8_1:51128185-51128204 Msa1199210:intron 30.0%
! ATTCTCCAAATCTATTTTCC+AGG - chr8_1:51128417-51128436 Msa1199210:intron 30.0%
! TTCTCCAAATCTATTTTCCA+GGG - chr8_1:51128418-51128437 Msa1199210:intron 30.0%
!! TTTTCCAGGGTACATTTTTT+AGG - chr8_1:51128431-51128450 Msa1199210:intron 30.0%
!!! TTTCCAGGGTACATTTTTTA+GGG - chr8_1:51128432-51128451 Msa1199210:intron 30.0%
GATTTGAAAAGTTGAAGGTT+TGG + chr8_1:51128479-51128498 None:intergenic 30.0%
ATAATCCAACTCATTGTGTT+TGG + chr8_1:51128557-51128576 None:intergenic 30.0%
TCTGTCTTGTATATATGTGT+TGG - chr8_1:51128761-51128780 Msa1199210:intron 30.0%
! TAAATGACTTGGCATTTACT+AGG - chr8_1:51128829-51128848 Msa1199210:intron 30.0%
TTCAACCATACCTCTAAATT+AGG + chr8_1:51128923-51128942 None:intergenic 30.0%
! TTTAGAGGTATGGTTGAATT+TGG - chr8_1:51128925-51128944 Msa1199210:intron 30.0%
! TTAGAGGTATGGTTGAATTT+GGG - chr8_1:51128926-51128945 Msa1199210:intron 30.0%
! AATTTGGCCTTTACTATATC+AGG - chr8_1:51129026-51129045 Msa1199210:intron 30.0%
CAAGAAACCTGATATAGTAA+AGG + chr8_1:51129036-51129055 None:intergenic 30.0%
!!! AGGTTTCTTGTGTTGTTTTA+AGG - chr8_1:51129046-51129065 Msa1199210:intron 30.0%
!!! TTTCTTGTGTTGTTTTAAGG+AGG - chr8_1:51129049-51129068 Msa1199210:intron 30.0%
ACAACTAATACTCTCAAGTA+AGG + chr8_1:51129349-51129368 None:intergenic 30.0%
ATACAAATTCTCAGGGAAAA+GGG - chr8_1:51129441-51129460 Msa1199210:intron 30.0%
! CTCACTAACTACATTTTCAA+TGG + chr8_1:51129482-51129501 None:intergenic 30.0%
CATTGAAAATGTAGTTAGTG+AGG - chr8_1:51129480-51129499 Msa1199210:intron 30.0%
! AATAGGTTTTTACATGAGTG+AGG + chr8_1:51129547-51129566 None:intergenic 30.0%
ATTCATTGGGAAGAAGATTA+AGG + chr8_1:51129684-51129703 None:intergenic 30.0%
TGAAAGGAGAAAGTGATTAT+GGG - chr8_1:51129947-51129966 Msa1199210:CDS 30.0%
!!! AGTTTTTGAATGGTTTTGAG+AGG - chr8_1:51129972-51129991 Msa1199210:intron 30.0%
!!! GTTTTTGAATGGTTTTGAGA+GGG - chr8_1:51129973-51129992 Msa1199210:intron 30.0%
TTGAAATTGACCTTTACTGA+TGG + chr8_1:51130156-51130175 None:intergenic 30.0%
TATATAGTGTAAAAGAACCC+TGG + chr8_1:51130284-51130303 None:intergenic 30.0%
!! ACAATTAGTTCTGAACAAAG+TGG + chr8_1:51130333-51130352 None:intergenic 30.0%
!!! GATTTTTTGGGCTTTTTCTT+TGG + chr8_1:51130512-51130531 None:intergenic 30.0%
! AAAGAGACTAAACATTGACT+GGG - chr8_1:51130580-51130599 Msa1199210:intron 30.0%
ACAAAAATAATCTACAAGGC+AGG + chr8_1:51130680-51130699 None:intergenic 30.0%
GCATTATAACAAATAGTAGC+AGG - chr8_1:51130919-51130938 Msa1199210:intron 30.0%
AAATCACTTATGAAGCACAA+TGG + chr8_1:51131077-51131096 None:intergenic 30.0%
AAAGACACATTTGAATGACA+GGG + chr8_1:51131133-51131152 None:intergenic 30.0%
AAAAGACACATTTGAATGAC+AGG + chr8_1:51131134-51131153 None:intergenic 30.0%
TCTTGCAATATGTTATTGAG+GGG - chr8_1:51131312-51131331 Msa1199210:intron 30.0%
AATTCAACGATTTCAATGGT+TGG - chr8_1:51131444-51131463 Msa1199210:intron 30.0%
TATCTATCGTAGAATCAGTT+AGG + chr8_1:51131498-51131517 None:intergenic 30.0%
! CTTTTACTTTGATTCCTCTT+TGG - chr8_1:51131609-51131628 Msa1199210:intron 30.0%
AAGTATGAGGAGATGAATTT+AGG + chr8_1:51131635-51131654 None:intergenic 30.0%
TCCTTAATGCAAAGCTTAAA+GGG + chr8_1:51131910-51131929 None:intergenic 30.0%
TTCCTTAATGCAAAGCTTAA+AGG + chr8_1:51131911-51131930 None:intergenic 30.0%
AGGGAACGAATGAAAGAATT+CGG + chr8_1:51126054-51126073 None:intergenic 35.0%
! TGAAAATGAAGATGCTGACT+TGG - chr8_1:51126078-51126097 Msa1199210:exon 35.0%
!! GAAAATGAAGATGCTGACTT+GGG - chr8_1:51126079-51126098 Msa1199210:exon 35.0%
!! AACATTTTCAAGGTCTTGAG+GGG + chr8_1:51126182-51126201 None:intergenic 35.0%
!! CAACATTTTCAAGGTCTTGA+GGG + chr8_1:51126183-51126202 None:intergenic 35.0%
! TGGAGCTTCTAAAGAAAAAC+AGG - chr8_1:51126295-51126314 Msa1199210:intron 35.0%
! GGAGCTTCTAAAGAAAAACA+GGG - chr8_1:51126296-51126315 Msa1199210:intron 35.0%
AAAAACAGGGACATGTTGTT+TGG - chr8_1:51126309-51126328 Msa1199210:intron 35.0%
! AAAACAGGGACATGTTGTTT+GGG - chr8_1:51126310-51126329 Msa1199210:intron 35.0%
!! TATGCGAAATTAGCTCTGTT+TGG - chr8_1:51126386-51126405 Msa1199210:intron 35.0%
AAATAAGCTATACGAGCATG+AGG - chr8_1:51126656-51126675 Msa1199210:intron 35.0%
GGCAACTAGAGTAGATTAAA+TGG + chr8_1:51127200-51127219 None:intergenic 35.0%
TTAATCTACTCTAGTTGCCA+TGG - chr8_1:51127201-51127220 Msa1199210:intron 35.0%
ACACCAGACAAAATAGGATT+AGG + chr8_1:51127327-51127346 None:intergenic 35.0%
GCATTGTCTTTATTCTGTGT+TGG - chr8_1:51127387-51127406 Msa1199210:intron 35.0%
TAAGACAGCCAATGTTGTAT+AGG + chr8_1:51127436-51127455 None:intergenic 35.0%
!! AAGGTATTGCTCAAGCTAAA+GGG + chr8_1:51127480-51127499 None:intergenic 35.0%
!! AAAGGTATTGCTCAAGCTAA+AGG + chr8_1:51127481-51127500 None:intergenic 35.0%
! GGGCGTTTTATGTGATAAAA+AGG + chr8_1:51127499-51127518 None:intergenic 35.0%
! TTTTATCACATAAAACGCCC+AGG - chr8_1:51127499-51127518 Msa1199210:CDS 35.0%
TGTAAACCATCATCTTCAAG+CGG + chr8_1:51127547-51127566 None:intergenic 35.0%
! CAAAACAACAGAGATTTGCT+GGG + chr8_1:51127573-51127592 None:intergenic 35.0%
TCAAAACAACAGAGATTTGC+TGG + chr8_1:51127574-51127593 None:intergenic 35.0%
TAGAAGTAAGACGAATGATG+TGG + chr8_1:51127664-51127683 None:intergenic 35.0%
TTCGTCTTACTTCTACTCAA+TGG - chr8_1:51127669-51127688 Msa1199210:intron 35.0%
AATAAATGACGTTAGAGGCT+TGG + chr8_1:51127721-51127740 None:intergenic 35.0%
GAGGAAATAAATGACGTTAG+AGG + chr8_1:51127726-51127745 None:intergenic 35.0%
ACGTCATTTATTTCCTCTCT+TGG - chr8_1:51127729-51127748 Msa1199210:intron 35.0%
!! GTACTTTTTGTTGAGGAATG+AGG + chr8_1:51127778-51127797 None:intergenic 35.0%
!! GCTATACGTACTTTTTGTTG+AGG + chr8_1:51127785-51127804 None:intergenic 35.0%
! TAACAATAGGATTTGCTTCC+AGG + chr8_1:51127881-51127900 None:intergenic 35.0%
!!! GGTTAGTTTTACCTGGAAAT+AGG + chr8_1:51128141-51128160 None:intergenic 35.0%
! CTTTTTCTCTCAACATCTCT+GGG + chr8_1:51128179-51128198 None:intergenic 35.0%
! TCTTTTTCTCTCAACATCTC+TGG + chr8_1:51128180-51128199 None:intergenic 35.0%
! TCTTGTTTGGGATGAACATT+TGG - chr8_1:51128365-51128384 Msa1199210:intron 35.0%
!!! TTTTTTAGGGTACAGACCTT+TGG - chr8_1:51128391-51128410 Msa1199210:intron 35.0%
AGATTTGGAGAATAAGCCAA+AGG + chr8_1:51128410-51128429 None:intergenic 35.0%
TGTACCCTGGAAAATAGATT+TGG + chr8_1:51128425-51128444 None:intergenic 35.0%
TTACCCTAAAAAATGTACCC+TGG + chr8_1:51128438-51128457 None:intergenic 35.0%
TTGGTTCAAGCACACAAAAA+TGG + chr8_1:51128538-51128557 None:intergenic 35.0%
TTGAACCAAACACAATGAGT+TGG - chr8_1:51128549-51128568 Msa1199210:intron 35.0%
! CACTTTAGAAACGTGTAGAA+GGG + chr8_1:51128695-51128714 None:intergenic 35.0%
! TCACTTTAGAAACGTGTAGA+AGG + chr8_1:51128696-51128715 None:intergenic 35.0%
ATAGTAAAGGCCAAATTGTG+TGG + chr8_1:51129023-51129042 None:intergenic 35.0%
GGTTAATTGTGTTCAGTAGA+TGG - chr8_1:51129176-51129195 Msa1199210:intron 35.0%
GGTAGTCATACAAATTCTCA+GGG - chr8_1:51129434-51129453 Msa1199210:intron 35.0%
CATACAAATTCTCAGGGAAA+AGG - chr8_1:51129440-51129459 Msa1199210:intron 35.0%
CAGTAGTAAATCTTTGTGCA+AGG + chr8_1:51129774-51129793 None:intergenic 35.0%
GGAATAAGTAGAGAAGTGAA+AGG - chr8_1:51129931-51129950 Msa1199210:CDS 35.0%
GTGAAAGGAGAAAGTGATTA+TGG - chr8_1:51129946-51129965 Msa1199210:CDS 35.0%
ATGTATCATGCCATCAGTAA+AGG - chr8_1:51130143-51130162 Msa1199210:intron 35.0%
! TATCACTGGTAATGAATGGA+AGG + chr8_1:51130362-51130381 None:intergenic 35.0%
GATAATTCAGCCTATCCATT+AGG + chr8_1:51130488-51130507 None:intergenic 35.0%
CAAAGAGACTAAACATTGAC+TGG - chr8_1:51130579-51130598 Msa1199210:intron 35.0%
AATAATCTACAAGGCAGGTA+AGG + chr8_1:51130675-51130694 None:intergenic 35.0%
TATCTTAAACCAGTCTCAGA+AGG - chr8_1:51131154-51131173 Msa1199210:intron 35.0%
ATCTTAAACCAGTCTCAGAA+GGG - chr8_1:51131155-51131174 Msa1199210:intron 35.0%
CTTGCAATATGTTATTGAGG+GGG - chr8_1:51131313-51131332 Msa1199210:intron 35.0%
CAATCTTAGAGCTTGAACTT+AGG + chr8_1:51131416-51131435 None:intergenic 35.0%
GGGAATTTATGGTATAGGAT+AGG + chr8_1:51131534-51131553 None:intergenic 35.0%
GGCTAGAGATTGAGAATAAT+GGG + chr8_1:51131554-51131573 None:intergenic 35.0%
AGGCTAGAGATTGAGAATAA+TGG + chr8_1:51131555-51131574 None:intergenic 35.0%
AGTAAAAGAAGACACGTTCA+CGG + chr8_1:51131597-51131616 None:intergenic 35.0%
!! AGAAAATGGACTAGCTAATG+TGG + chr8_1:51131783-51131802 None:intergenic 35.0%
ACCCTTTAAGCTTTGCATTA+AGG - chr8_1:51131906-51131925 Msa1199210:CDS 35.0%
! AAGGAAGTTCTTTTTCTTGC+AGG - chr8_1:51131925-51131944 Msa1199210:CDS 35.0%
! AGGAAGTTCTTTTTCTTGCA+GGG - chr8_1:51131926-51131945 Msa1199210:CDS 35.0%
TCAGCTTTCCCTGTTATTAT+AGG - chr8_1:51131971-51131990 Msa1199210:CDS 35.0%
!! GAAGGAAGTGTTAATGGCAA+CGG + chr8_1:51125929-51125948 None:intergenic 40.0%
TCTCACTCTCTCTTTACCAA+CGG - chr8_1:51125995-51126014 Msa1199210:three_prime_UTR 40.0%
! GCATCTTCATTTTCAGCAGA+GGG + chr8_1:51126073-51126092 None:intergenic 40.0%
! AGCATCTTCATTTTCAGCAG+AGG + chr8_1:51126074-51126093 None:intergenic 40.0%
! ATCATCAAGTTGCTGTGTAG+AGG + chr8_1:51126110-51126129 None:intergenic 40.0%
!! GCAACATTTTCAAGGTCTTG+AGG + chr8_1:51126184-51126203 None:intergenic 40.0%
AAGCTCCAAAACCTGCAAAA+GGG + chr8_1:51126283-51126302 None:intergenic 40.0%
! AAACAGGGACATGTTGTTTG+GGG - chr8_1:51126311-51126330 Msa1199210:intron 40.0%
GAATGAGCTTGTGATAAGCT+AGG - chr8_1:51126446-51126465 Msa1199210:intron 40.0%
ATACGAGCATGAGGAAATGA+CGG - chr8_1:51126665-51126684 Msa1199210:intron 40.0%
AGGAAATGACGGTTACCAAA+CGG - chr8_1:51126676-51126695 Msa1199210:intron 40.0%
CTTGAGAGATTCAAGATCGA+AGG - chr8_1:51126786-51126805 Msa1199210:intron 40.0%
CAATCGAGATTTATCCCACT+AGG - chr8_1:51127027-51127046 Msa1199210:intron 40.0%
CAGTGGTTTGACTATAGACA+TGG + chr8_1:51127106-51127125 None:intergenic 40.0%
GAGGTGACTTATAGATTCCA+TGG + chr8_1:51127221-51127240 None:intergenic 40.0%
! GGTCCTAATCCTATTTTGTC+TGG - chr8_1:51127321-51127340 Msa1199210:intron 40.0%
GTGGAAACACCAGACAAAAT+AGG + chr8_1:51127333-51127352 None:intergenic 40.0%
AGCCAATGTTGTATAGGATG+GGG + chr8_1:51127430-51127449 None:intergenic 40.0%
CAGCCAATGTTGTATAGGAT+GGG + chr8_1:51127431-51127450 None:intergenic 40.0%
ACAGCCAATGTTGTATAGGA+TGG + chr8_1:51127432-51127451 None:intergenic 40.0%
TAAACCATCATCTTCAAGCG+GGG + chr8_1:51127545-51127564 None:intergenic 40.0%
GTAAACCATCATCTTCAAGC+GGG + chr8_1:51127546-51127565 None:intergenic 40.0%
GTCTTACTTCTACTCAATGG+AGG - chr8_1:51127672-51127691 Msa1199210:intron 40.0%
! TCTGGGATCCTCAATCATTA+TGG + chr8_1:51128162-51128181 None:intergenic 40.0%
TAACTAGGTCGTCTCTTGTT+GGG + chr8_1:51128229-51128248 None:intergenic 40.0%
CTTCTTCCAAAGCAGTAACT+AGG + chr8_1:51128244-51128263 None:intergenic 40.0%
! GTACTTTTGCAACCTGAAAG+TGG + chr8_1:51128636-51128655 None:intergenic 40.0%
TGGCATTTACTAGGTGAATG+AGG - chr8_1:51128838-51128857 Msa1199210:intron 40.0%
GGCATTTACTAGGTGAATGA+GGG - chr8_1:51128839-51128858 Msa1199210:intron 40.0%
GCATTTACTAGGTGAATGAG+GGG - chr8_1:51128840-51128859 Msa1199210:intron 40.0%
GAATGAGGGGAAAATTCCAA+AGG - chr8_1:51128853-51128872 Msa1199210:intron 40.0%
TACCTCTAAATTAGGCCATG+CGG + chr8_1:51128915-51128934 None:intergenic 40.0%
CATGGCCTAATTTAGAGGTA+TGG - chr8_1:51128915-51128934 Msa1199210:intron 40.0%
ATGTCTTGAACATGTGAGTG+AGG - chr8_1:51128979-51128998 Msa1199210:intron 40.0%
GGGTAGTCATACAAATTCTC+AGG - chr8_1:51129433-51129452 Msa1199210:intron 40.0%
! GTTTTTACATGAGTGAGGTG+TGG + chr8_1:51129542-51129561 None:intergenic 40.0%
! GAGAGCGTGATTCATTCATT+GGG + chr8_1:51129697-51129716 None:intergenic 40.0%
! TGAGAGCGTGATTCATTCAT+TGG + chr8_1:51129698-51129717 None:intergenic 40.0%
AGACCAAGCTCTCTAATTCT+TGG - chr8_1:51129998-51130017 Msa1199210:intron 40.0%
CAAGCTCTCTAATTCTTGGA+GGG - chr8_1:51130002-51130021 Msa1199210:intron 40.0%
ACCTCTCGAATTTCTTGGAT+GGG - chr8_1:51130029-51130048 Msa1199210:intron 40.0%
TTTGACCAATTTGATTGCCG+TGG - chr8_1:51130247-51130266 Msa1199210:intron 40.0%
TATGCAAAAACCACTGACAC+TGG - chr8_1:51130536-51130555 Msa1199210:intron 40.0%
CTGCACAACAATAATCATGG+TGG + chr8_1:51130724-51130743 None:intergenic 40.0%
GGTCTGCACAACAATAATCA+TGG + chr8_1:51130727-51130746 None:intergenic 40.0%
TATGAAGCACAATGGTGTGA+AGG + chr8_1:51131069-51131088 None:intergenic 40.0%
TTCACTCCCAGTTCTATTGT+TGG - chr8_1:51131204-51131223 Msa1199210:intron 40.0%
TCACTCCCAGTTCTATTGTT+GGG - chr8_1:51131205-51131224 Msa1199210:intron 40.0%
TGCAAGAATGGCTGCAAATA+AGG + chr8_1:51131299-51131318 None:intergenic 40.0%
!! ACCTTAGAAGTCGGTTTTCT+GGG - chr8_1:51131377-51131396 Msa1199210:intron 40.0%
GAGATGAATTTAGGCCAAAG+AGG + chr8_1:51131626-51131645 None:intergenic 40.0%
! TTCTTTTTCTTGCAGGGCTA+TGG - chr8_1:51131932-51131951 Msa1199210:CDS 40.0%
TGAGAACAGCGAAAGGTTGA+AGG + chr8_1:51125980-51125999 None:intergenic 45.0%
CTTGGTGAATTGTGTTCCGT+TGG + chr8_1:51126014-51126033 None:intergenic 45.0%
TGAAAGAATTCGGCGATGAG+TGG + chr8_1:51126044-51126063 None:intergenic 45.0%
!! TTTTCAAGGTCTTGAGGGGT+TGG + chr8_1:51126178-51126197 None:intergenic 45.0%
!! GCATTTTGATGCCCTTTTGC+AGG - chr8_1:51126269-51126288 Msa1199210:intron 45.0%
! TGATGCCCTTTTGCAGGTTT+TGG - chr8_1:51126275-51126294 Msa1199210:intron 45.0%
GAAGCTCCAAAACCTGCAAA+AGG + chr8_1:51126284-51126303 None:intergenic 45.0%
TCGAGATTTATCCCACTAGG+TGG - chr8_1:51127030-51127049 Msa1199210:intron 45.0%
CGAGATTTATCCCACTAGGT+GGG - chr8_1:51127031-51127050 Msa1199210:intron 45.0%
GAGATTTATCCCACTAGGTG+GGG - chr8_1:51127032-51127051 Msa1199210:intron 45.0%
TATAGTTGACCCCACCTAGT+GGG + chr8_1:51127044-51127063 None:intergenic 45.0%
ATATAGTTGACCCCACCTAG+TGG + chr8_1:51127045-51127064 None:intergenic 45.0%
ACTAGGTGGGGTCAACTATA+TGG - chr8_1:51127044-51127063 Msa1199210:intron 45.0%
! CTTAGTGGTTTGCACATGTG+TGG + chr8_1:51127243-51127262 None:intergenic 45.0%
GTCTGGTGTTTCCACTCATT+CGG - chr8_1:51127338-51127357 Msa1199210:intron 45.0%
AGTATGTTGTGCCGAATGAG+TGG + chr8_1:51127352-51127371 None:intergenic 45.0%
TCGGCACAACATACTCATCT+TGG - chr8_1:51127357-51127376 Msa1199210:intron 45.0%
! GTTGTATAGGATGGGGTGTT+GGG + chr8_1:51127423-51127442 None:intergenic 45.0%
TGTTGTATAGGATGGGGTGT+TGG + chr8_1:51127424-51127443 None:intergenic 45.0%
CACCCCATCCTATACAACAT+TGG - chr8_1:51127425-51127444 Msa1199210:intron 45.0%
! AGCGGGCTTAAAATTGAACC+TGG - chr8_1:51127860-51127879 Msa1199210:intron 45.0%
AACTAGGTCGTCTCTTGTTG+GGG + chr8_1:51128228-51128247 None:intergenic 45.0%
GTAACTAGGTCGTCTCTTGT+TGG + chr8_1:51128230-51128249 None:intergenic 45.0%
AGACGACCTAGTTACTGCTT+TGG - chr8_1:51128235-51128254 Msa1199210:intron 45.0%
GCATATTCCAGTCCACTTTC+AGG - chr8_1:51128621-51128640 Msa1199210:intron 45.0%
TTTGCAACCTGAAAGTGGAC+TGG + chr8_1:51128631-51128650 None:intergenic 45.0%
TGGAGAACAGCTCTATCCTT+TGG + chr8_1:51128872-51128891 None:intergenic 45.0%
TCATTTCCTCAGCAAGCATC+TGG + chr8_1:51128892-51128911 None:intergenic 45.0%
TGCATCGTGTCCACACAATT+TGG - chr8_1:51129010-51129029 Msa1199210:intron 45.0%
GGAGATACAAGAACAACGCA+AGG + chr8_1:51129588-51129607 None:intergenic 45.0%
CCTCCAAGAATTAGAGAGCT+TGG + chr8_1:51130004-51130023 None:intergenic 45.0%
CCAAGCTCTCTAATTCTTGG+AGG - chr8_1:51130001-51130020 Msa1199210:intron 45.0%
GAGAGACCTCTCGAATTTCT+TGG - chr8_1:51130024-51130043 Msa1199210:intron 45.0%
GACCTCTCGAATTTCTTGGA+TGG - chr8_1:51130028-51130047 Msa1199210:intron 45.0%
TCCCATCCAAGAAATTCGAG+AGG + chr8_1:51130033-51130052 None:intergenic 45.0%
TTCCACCACGGCAATCAAAT+TGG + chr8_1:51130255-51130274 None:intergenic 45.0%
!! AACAGAAGTGCCTTCAGCAT+TGG - chr8_1:51130643-51130662 Msa1199210:intron 45.0%
AAGGAACTGACCAATGCTGA+AGG + chr8_1:51130656-51130675 None:intergenic 45.0%
!! ATCTGTAACCCTTCTGAGAC+TGG + chr8_1:51131166-51131185 None:intergenic 45.0%
TCCAACACACTAGGTGATGT+GGG + chr8_1:51131349-51131368 None:intergenic 45.0%
ACAGTCCTCACCTTAGAAGT+CGG - chr8_1:51131368-51131387 Msa1199210:intron 45.0%
!! GAAAACCGACTTCTAAGGTG+AGG + chr8_1:51131376-51131395 None:intergenic 45.0%
!! CACCTTAGAAGTCGGTTTTC+TGG - chr8_1:51131376-51131395 Msa1199210:intron 45.0%
!! CCTTAGAAGTCGGTTTTCTG+GGG - chr8_1:51131378-51131397 Msa1199210:intron 45.0%
!! GTGGGAAAAGTACTAGAGAC+AGG + chr8_1:51131575-51131594 None:intergenic 45.0%
AAAGAAGACACGTTCACGGT+GGG + chr8_1:51131593-51131612 None:intergenic 45.0%
AAAAGAAGACACGTTCACGG+TGG + chr8_1:51131594-51131613 None:intergenic 45.0%
! GTTTTACAACTCCCTCCAGT+AGG - chr8_1:51132015-51132034 Msa1199210:intron 45.0%
ATGTTCACCTGACATCATCC+AGG - chr8_1:51132102-51132121 Msa1199210:CDS 45.0%
TGTTCACCTGACATCATCCA+GGG - chr8_1:51132103-51132122 Msa1199210:CDS 45.0%
AAACAACCCTGGATGATGTC+AGG + chr8_1:51132112-51132131 None:intergenic 45.0%
TGCTCCTCTTAGGATGTGTT+TGG - chr8_1:51132196-51132215 Msa1199210:CDS 45.0%
!! ATTTGAATAATAAAATTTAT+TGG + chr8_1:51129637-51129656 None:intergenic 5.0%
GAGAGAGTGAGAACAGCGAA+AGG + chr8_1:51125987-51126006 None:intergenic 50.0%
! AGTGGTTTGCACATGTGTGG+AGG + chr8_1:51127240-51127259 None:intergenic 50.0%
!! ATTGGTTGGTGAGCCAAGAG+AGG + chr8_1:51127745-51127764 None:intergenic 50.0%
! TGTTCTCCAGATGCTTGCTG+AGG - chr8_1:51128883-51128902 Msa1199210:intron 50.0%
TTGCTGAGGAAATGACCGCA+TGG - chr8_1:51128897-51128916 Msa1199210:intron 50.0%
GACCGCATGGCCTAATTTAG+AGG - chr8_1:51128910-51128929 Msa1199210:intron 50.0%
GACCAATTTGATTGCCGTGG+TGG - chr8_1:51130250-51130269 Msa1199210:intron 50.0%
! AGGATCGATTCCAGTGTCAG+TGG + chr8_1:51130549-51130568 None:intergenic 50.0%
CACTGGAATCGATCCTCAAG+TGG - chr8_1:51130553-51130572 Msa1199210:intron 50.0%
AGTCTCTTTGCAGCCACTTG+AGG + chr8_1:51130569-51130588 None:intergenic 50.0%
TGACAGGGCTGAGAGTTCAT+CGG + chr8_1:51131118-51131137 None:intergenic 50.0%
GGCAGCCCAACAATAGAACT+GGG + chr8_1:51131213-51131232 None:intergenic 50.0%
AGGCAGCCCAACAATAGAAC+TGG + chr8_1:51131214-51131233 None:intergenic 50.0%
GTCCAAGATCCAGGCTCATT+GGG - chr8_1:51131239-51131258 Msa1199210:intron 50.0%
ACACGTACATCCCCATACCT+AGG + chr8_1:51131265-51131284 None:intergenic 50.0%
AGGTATGGGGATGTACGTGT+TGG - chr8_1:51131265-51131284 Msa1199210:intron 50.0%
TCCCACATCACCTAGTGTGT+TGG - chr8_1:51131345-51131364 Msa1199210:intron 50.0%
GTCCAACACACTAGGTGATG+TGG + chr8_1:51131350-51131369 None:intergenic 50.0%
TGAGGACTGTCCAACACACT+AGG + chr8_1:51131358-51131377 None:intergenic 50.0%
! CCCCAGAAAACCGACTTCTA+AGG + chr8_1:51131381-51131400 None:intergenic 50.0%
!!! GGTTTTCTGGGGTTTGAGCT+AGG - chr8_1:51131389-51131408 Msa1199210:intron 50.0%
! GGGCTATGGAGCACTATACT+TGG - chr8_1:51131946-51131965 Msa1199210:CDS 50.0%
CCATACCAGTTCCTACTGGA+GGG + chr8_1:51132029-51132048 None:intergenic 50.0%
AGTGCCATACCAGTTCCTAC+TGG + chr8_1:51132033-51132052 None:intergenic 50.0%
CGAACTAGCTCAAACAACCC+TGG + chr8_1:51132123-51132142 None:intergenic 50.0%
! CCTAAGAGGAGCACACTACA+AGG + chr8_1:51132189-51132208 None:intergenic 50.0%
CCTTGTAGTGTGCTCCTCTT+AGG - chr8_1:51132186-51132205 Msa1199210:CDS 50.0%
! GCGATGAGTGGTGCTAAGCT+TGG + chr8_1:51126032-51126051 None:intergenic 55.0%
! CAGGGACATGTTGTTTGGGG+AGG - chr8_1:51126314-51126333 Msa1199210:intron 55.0%
!! GTATAGGATGGGGTGTTGGG+AGG + chr8_1:51127420-51127439 None:intergenic 55.0%
ACCATCATCTTCAAGCGGGG+TGG + chr8_1:51127542-51127561 None:intergenic 55.0%
GGACTGGAATATGCTGCCCT+TGG + chr8_1:51128615-51128634 None:intergenic 55.0%
CCCTGGCTGTATTTCCACCA+CGG + chr8_1:51130267-51130286 None:intergenic 55.0%
! CCGTGGTGGAAATACAGCCA+GGG - chr8_1:51130264-51130283 Msa1199210:intron 55.0%
GACAGGGCTGAGAGTTCATC+GGG + chr8_1:51131117-51131136 None:intergenic 55.0%
CGTCCAAGATCCAGGCTCAT+TGG - chr8_1:51131238-51131257 Msa1199210:intron 55.0%
ATACCTAGGCCCAATGAGCC+TGG + chr8_1:51131251-51131270 None:intergenic 55.0%
AGGCTCATTGGGCCTAGGTA+TGG - chr8_1:51131250-51131269 Msa1199210:intron 55.0%
GGCTCATTGGGCCTAGGTAT+GGG - chr8_1:51131251-51131270 Msa1199210:intron 55.0%
GCTCATTGGGCCTAGGTATG+GGG - chr8_1:51131252-51131271 Msa1199210:intron 55.0%
CAACTCCCTCCAGTAGGAAC+TGG - chr8_1:51132021-51132040 Msa1199210:CDS 55.0%
CCCTCCAGTAGGAACTGGTA+TGG - chr8_1:51132026-51132045 Msa1199210:CDS 55.0%
GCCATACCAGTTCCTACTGG+AGG + chr8_1:51132030-51132049 None:intergenic 55.0%
GCTCGCAGTGGAGAGAGTTG+GGG + chr8_1:51127301-51127320 None:intergenic 60.0%
CGCTCGCAGTGGAGAGAGTT+GGG + chr8_1:51127302-51127321 None:intergenic 60.0%
CCAACTCTCTCCACTGCGAG+CGG - chr8_1:51127300-51127319 Msa1199210:intron 60.0%
AGGATTAGGACCGCTCGCAG+TGG + chr8_1:51127313-51127332 None:intergenic 60.0%
CTGAAGTGGAGGAGGGTCCT+GGG + chr8_1:51127519-51127538 None:intergenic 60.0%
TTCAAGCGGGGTGGCTGAAG+TGG + chr8_1:51127533-51127552 None:intergenic 60.0%
GCCACCCCGCTTGAAGATGA+TGG - chr8_1:51127538-51127557 Msa1199210:CDS 60.0%
! GCCGTGGTGGAAATACAGCC+AGG - chr8_1:51130263-51130282 Msa1199210:intron 60.0%
GGCTGAGAGTTCATCGGGAC+AGG + chr8_1:51131112-51131131 None:intergenic 60.0%
GCCTGCATCGTCCAAGATCC+AGG - chr8_1:51131230-51131249 Msa1199210:intron 60.0%
GCCTGGATCTTGGACGATGC+AGG + chr8_1:51131234-51131253 None:intergenic 60.0%
GGCCCAATGAGCCTGGATCT+TGG + chr8_1:51131244-51131263 None:intergenic 60.0%
GATCCAGGCTCATTGGGCCT+AGG - chr8_1:51131245-51131264 Msa1199210:intron 60.0%
CCGCTCGCAGTGGAGAGAGT+TGG + chr8_1:51127303-51127322 None:intergenic 65.0%
GCTGAAGTGGAGGAGGGTCC+TGG + chr8_1:51127520-51127539 None:intergenic 65.0%
GGGGTGGCTGAAGTGGAGGA+GGG + chr8_1:51127526-51127545 None:intergenic 65.0%
AAGCGGGGTGGCTGAAGTGG+AGG + chr8_1:51127530-51127549 None:intergenic 65.0%
CGGGGTGGCTGAAGTGGAGG+AGG + chr8_1:51127527-51127546 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 51125902 51132219 51125902 ID=Msa1199210;Name=Msa1199210
chr8_1 mRNA 51125902 51132219 51125902 ID=Msa1199210-mRNA-1;Parent=Msa1199210;Name=Msa1199210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.83|0.71|1|0.66|0.71|7|183|265
chr8_1 exon 51125902 51126174 51125902 ID=Msa1199210-mRNA-1:exon:16179;Parent=Msa1199210-mRNA-1
chr8_1 exon 51127457 51127624 51127457 ID=Msa1199210-mRNA-1:exon:16178;Parent=Msa1199210-mRNA-1
chr8_1 exon 51129190 51129270 51129190 ID=Msa1199210-mRNA-1:exon:16177;Parent=Msa1199210-mRNA-1
chr8_1 exon 51129859 51129972 51129859 ID=Msa1199210-mRNA-1:exon:16176;Parent=Msa1199210-mRNA-1
chr8_1 exon 51131786 51131830 51131786 ID=Msa1199210-mRNA-1:exon:16175;Parent=Msa1199210-mRNA-1
chr8_1 exon 51131905 51132003 51131905 ID=Msa1199210-mRNA-1:exon:16174;Parent=Msa1199210-mRNA-1
chr8_1 exon 51132019 51132219 51132019 ID=Msa1199210-mRNA-1:exon:16173;Parent=Msa1199210-mRNA-1
chr8_1 CDS 51132019 51132219 51132019 ID=Msa1199210-mRNA-1:cds;Parent=Msa1199210-mRNA-1
chr8_1 CDS 51131905 51132003 51131905 ID=Msa1199210-mRNA-1:cds;Parent=Msa1199210-mRNA-1
chr8_1 CDS 51131786 51131830 51131786 ID=Msa1199210-mRNA-1:cds;Parent=Msa1199210-mRNA-1
chr8_1 CDS 51129859 51129972 51129859 ID=Msa1199210-mRNA-1:cds;Parent=Msa1199210-mRNA-1
chr8_1 CDS 51129190 51129270 51129190 ID=Msa1199210-mRNA-1:cds;Parent=Msa1199210-mRNA-1
chr8_1 CDS 51127457 51127624 51127457 ID=Msa1199210-mRNA-1:cds;Parent=Msa1199210-mRNA-1
chr8_1 CDS 51126085 51126174 51126085 ID=Msa1199210-mRNA-1:cds;Parent=Msa1199210-mRNA-1
chr8_1 three_prime_UTR 51125902 51126084 51125902 ID=Msa1199210-mRNA-1:three_prime_utr;Parent=Msa1199210-mRNA-1
Gene Sequence

>Msa1199210

ATGGCAGTGGCATCATCATCACAACCGTTGCCATTAACACTTCCTTCAATTTCATCTTCACAATCACATTCTCTTCCTTCAACCTTTCGCTGTTCTCACTCTCTCTTTACCAACGGAACACAATTCACCAAGCTTAGCACCACTCATCGCCGAATTCTTTCATTCGTTCCCTCTGCTGAAAATGAAGATGCTGACTTGGGTCAACTTGATGATGACGTTGATGATGATGATGTTGTTGTTGATGATGATGAAGAAGAACCAACCCCTCAAGACCTTGAAAATGTTGCTGAAATCAAAAGGGTTTTGGAGCTTCTAAAGAAAAACAGGGACATGTTGTTTGGGGAGGTAAAACTAACCATAATGATTGAGGATCCCAGAGATGTTGAGAGAAAAAGATTACTTGGTATTGAAGATCTTGATGCCCCAACAAGAGACGACCTAGTTACTGCTTTGGAAGAAGTGAATGAGGGGAAAATTCCAAAGGATAGAGCTGTTCTCCAGATGCTTGCTGAGGAAATGACCGCATGGCCTAATTTAGAGGCTGAATTATCACCAAAGAAAAAGCCCAAAAAATCTCTATATGCAAAAACCACTGACACTGGAATCGATCCTCAAGTGGCTGCAAAGAGACTAAACATTGACTGGGATTCTGCTGCTGAAATTGAAGATGCGAATACTGACGATGAAACAGAAGTGCCTTCAGCATTGGGCTATGGAGCACTATACTTGGTTTCAGCTTTCCCTGTTATTATAGGTATTTCTGTAGTTTTGATTTTGTTTTACAACTCCCTCCAGTAG

Protein sequence

>Msa1199210

MAVASSSQPLPLTLPSISSSQSHSLPSTFRCSHSLFTNGTQFTKLSTTHRRILSFVPSAENEDADLGQLDDDVDDDDVVVDDDEEEPTPQDLENVAEIKRVLELLKKNRDMLFGEVKLTIMIEDPRDVERKRLLGIEDLDAPTRDDLVTALEEVNEGKIPKDRAVLQMLAEEMTAWPNLEAELSPKKKPKKSLYAKTTDTGIDPQVAAKRLNIDWDSAAEIEDANTDDETEVPSALGYGALYLVSAFPVIIGISVVLILFYNSLQ*