AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0695930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0695930 MtrunA17_Chr4g0047741 97.409 193 5 0 1 193 1 193 1.12e-133 372
Msa0695930 MtrunA17_Chr3g0086951 39.429 175 93 4 25 191 18 187 5.27e-20 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0695930 AT1G74730.1 65.625 192 64 2 3 193 8 198 6.09e-67 204
Msa0695930 AT5G08050.1 40.000 125 67 2 72 193 39 158 6.50e-15 69.3

Find 62 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGCTGTTGGGTTGTTTGC+TGG 0.240768 4_4:+65635583 Msa0695930:CDS
TGTTGTTCTCGGCGGGTTGC+AGG 0.251096 4_4:+65635609 Msa0695930:CDS
CTCTTGGTGTTGGGGCTGTT+GGG 0.261115 4_4:+65635572 Msa0695930:CDS
GCTCTTGGTGTTGGGGCTGT+TGG 0.285475 4_4:+65635571 Msa0695930:CDS
TACTACTCTTGTTGTAGTTC+AGG 0.286824 4_4:+65635534 Msa0695930:CDS
TTGCTGCTGCTCTTGGTGTT+GGG 0.287275 4_4:+65635563 Msa0695930:CDS
TCTGGCGCTTCCGACGCTTT+TGG 0.312429 4_4:+65635474 Msa0695930:CDS
TCCTTCCGTCTTGGCTTCTC+TGG 0.328777 4_4:+65635456 Msa0695930:CDS
GAAGACGGTGAAAGGTTTAT+TGG 0.335357 4_4:-65635071 None:intergenic
GATAAGGAAAAGATAGATAA+AGG 0.353630 4_4:+65634824 Msa0695930:five_prime_UTR
GTTGCTGCTGCTCTTGGTGT+TGG 0.359407 4_4:+65635562 Msa0695930:CDS
TGAACAAGTACAACGATAAC+TGG 0.365581 4_4:+65635200 Msa0695930:CDS
GCTGTTGTTGCTGCTGCTCT+TGG 0.375504 4_4:+65635556 Msa0695930:CDS
TTTGCTGGATCTGTTGTTCT+CGG 0.382286 4_4:+65635598 Msa0695930:CDS
TTATCCAAAGCTGAAGAATT+CGG 0.394470 4_4:+65635340 Msa0695930:CDS
GACGCCGAATTCTTCAGCTT+TGG 0.394886 4_4:-65635344 None:intergenic
CGCAGTCTCTCCTTCCGTCT+TGG 0.401430 4_4:+65635447 Msa0695930:CDS
CTGGATCTGTTGTTCTCGGC+GGG 0.425288 4_4:+65635602 Msa0695930:CDS
AAGGTTTATTGGAGGGAGTA+GGG 0.427009 4_4:-65635060 None:intergenic
TGCTGCTGCTCTTGGTGTTG+GGG 0.441410 4_4:+65635564 Msa0695930:CDS
CTTCATCTCATTATACTACA+AGG 0.442953 4_4:+65635749 Msa0695930:three_prime_UTR
CAACAAGATCGCACATGAAA+AGG 0.445504 4_4:+65634877 Msa0695930:five_prime_UTR
TGAAGATGGAGAGCTGAGGT+TGG 0.487004 4_4:-65634992 None:intergenic
AAAGGTTTATTGGAGGGAGT+AGG 0.498790 4_4:-65635061 None:intergenic
AACTGGAAGAAACAATGGTT+CGG 0.517807 4_4:+65635217 Msa0695930:CDS
TAGTATAATGAGATGAAGAA+AGG 0.524303 4_4:-65635744 None:intergenic
AAGAAACAATGGTTCGGAGC+AGG 0.525520 4_4:+65635223 Msa0695930:CDS
GCCAGAGAAGCCAAGACGGA+AGG 0.526449 4_4:-65635457 None:intergenic
TTTGGGAGCCATGGCGAAGA+CGG 0.535063 4_4:-65635086 None:intergenic
AGCGATAGTGACGGAGGGTG+CGG 0.535126 4_4:-65635033 None:intergenic
ACAAGAGTAGTAGAATCATC+AGG 0.544351 4_4:-65635523 None:intergenic
AAAAGATTACGAGATAGATA+AGG 0.544468 4_4:+65634808 None:intergenic
TGGAGAGCTGAGGTTGGAGT+AGG 0.544774 4_4:-65634986 None:intergenic
ACCTTTCACCGTCTTCGCCA+TGG 0.548618 4_4:+65635078 Msa0695930:CDS
ACGGTGAAAGGTTTATTGGA+GGG 0.551755 4_4:-65635067 None:intergenic
GACGGTGAAAGGTTTATTGG+AGG 0.551953 4_4:-65635068 None:intergenic
AGGAAGTGAAGAAGTAGAAG+TGG 0.552394 4_4:+65635258 Msa0695930:CDS
CTCTCTTCAATCGAGAAACT+AGG 0.554038 4_4:+65635370 Msa0695930:CDS
GCCATGGCGAAGACGGTGAA+AGG 0.555013 4_4:-65635079 None:intergenic
TTCATCTCATTATACTACAA+GGG 0.556284 4_4:+65635750 Msa0695930:three_prime_UTR
AAGCGCCAGAGAAGCCAAGA+CGG 0.557107 4_4:-65635461 None:intergenic
TGTTCTCGGCGGGTTGCAGG+AGG 0.559794 4_4:+65635612 Msa0695930:CDS
GGAGGGTGCGGTGGTTAGTG+TGG 0.562291 4_4:-65635021 None:intergenic
TTTGGCTGCTGTTGCGACGG+TGG 0.563007 4_4:+65635492 Msa0695930:CDS
TAGTGTGGATGTGTTGAAGA+TGG 0.568146 4_4:-65635006 None:intergenic
AGCGCGCGCATCATCATCCA+TGG 0.583302 4_4:+65634958 Msa0695930:exon
GGTATGAGCAATACGACTGG+TGG 0.598192 4_4:+65634845 Msa0695930:five_prime_UTR
GCTGGATCTGTTGTTCTCGG+CGG 0.618325 4_4:+65635601 Msa0695930:CDS
ACGATAACTGGAAGAAACAA+TGG 0.622411 4_4:+65635212 Msa0695930:CDS
GTATGAGCAATACGACTGGT+GGG 0.622950 4_4:+65634846 Msa0695930:five_prime_UTR
CAAGACGGAAGGAGAGACTG+CGG 0.624177 4_4:-65635446 None:intergenic
GATAGTGACGGAGGGTGCGG+TGG 0.630396 4_4:-65635030 None:intergenic
AAAGGTATGAGCAATACGAC+TGG 0.634129 4_4:+65634842 Msa0695930:five_prime_UTR
TAGGGAATGAGCGATAGTGA+CGG 0.635156 4_4:-65635042 None:intergenic
GCAACAGCAGCCAAAAGCGT+CGG 0.640980 4_4:-65635484 None:intergenic
GGTTGGAGTAGGAACAGCCA+TGG 0.646361 4_4:-65634975 None:intergenic
GGAATGAGCGATAGTGACGG+AGG 0.658654 4_4:-65635039 None:intergenic
GAATGAGCGATAGTGACGGA+GGG 0.663461 4_4:-65635038 None:intergenic
GGAGCAGGAATATTCTACGA+AGG 0.698664 4_4:+65635238 Msa0695930:CDS
TGCAATCTCAACTGCCACGT+AGG 0.711060 4_4:-65634930 None:intergenic
GTGTTGAAGATGGAGAGCTG+AGG 0.722843 4_4:-65634996 None:intergenic
ACTCTATTGATTGTCCTACG+TGG 0.755869 4_4:+65634916 Msa0695930:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTGAATTTATGTTAA+TGG + chr4_4:65635167-65635186 Msa0695930:intron 10.0%
!! TTTATTTGAATTTATGTTAA+TGG + chr4_4:65635167-65635186 Msa0695930:intron 10.0%
!! AAATAATGATGAAAATGATG+AGG - chr4_4:65635134-65635153 None:intergenic 20.0%
!!! TGAATTTATGTTAATGGATA+TGG + chr4_4:65635173-65635192 Msa0695930:intron 20.0%
!! AAATAATGATGAAAATGATG+AGG - chr4_4:65635134-65635153 None:intergenic 20.0%
!!! TGAATTTATGTTAATGGATA+TGG + chr4_4:65635173-65635192 Msa0695930:intron 20.0%
! GATAAGGAAAAGATAGATAA+AGG + chr4_4:65634824-65634843 Msa0695930:five_prime_UTR 25.0%
!! TTTATGTTAATGGATATGGA+AGG + chr4_4:65635177-65635196 Msa0695930:intron 25.0%
! TAGTATAATGAGATGAAGAA+AGG - chr4_4:65635747-65635766 None:intergenic 25.0%
! TTCATCTCATTATACTACAA+GGG + chr4_4:65635750-65635769 Msa0695930:three_prime_UTR 25.0%
! GATAAGGAAAAGATAGATAA+AGG + chr4_4:65634824-65634843 Msa0695930:five_prime_UTR 25.0%
!! TTTATGTTAATGGATATGGA+AGG + chr4_4:65635177-65635196 Msa0695930:intron 25.0%
! TAGTATAATGAGATGAAGAA+AGG - chr4_4:65635747-65635766 None:intergenic 25.0%
! TTCATCTCATTATACTACAA+GGG + chr4_4:65635750-65635769 Msa0695930:three_prime_UTR 25.0%
! TGTGTATGTACCTTCTTTTT+GGG - chr4_4:65635106-65635125 None:intergenic 30.0%
! TTGTGTATGTACCTTCTTTT+TGG - chr4_4:65635107-65635126 None:intergenic 30.0%
TTATCCAAAGCTGAAGAATT+CGG + chr4_4:65635340-65635359 Msa0695930:CDS 30.0%
!!! GAAACTAGGACTTTTTTCTA+AGG + chr4_4:65635384-65635403 Msa0695930:CDS 30.0%
AATTACAACAAAAACAACCG+CGG - chr4_4:65635667-65635686 None:intergenic 30.0%
CTTCATCTCATTATACTACA+AGG + chr4_4:65635749-65635768 Msa0695930:three_prime_UTR 30.0%
! TGTGTATGTACCTTCTTTTT+GGG - chr4_4:65635106-65635125 None:intergenic 30.0%
! TTGTGTATGTACCTTCTTTT+TGG - chr4_4:65635107-65635126 None:intergenic 30.0%
TTATCCAAAGCTGAAGAATT+CGG + chr4_4:65635340-65635359 Msa0695930:CDS 30.0%
!!! GAAACTAGGACTTTTTTCTA+AGG + chr4_4:65635384-65635403 Msa0695930:CDS 30.0%
AATTACAACAAAAACAACCG+CGG - chr4_4:65635667-65635686 None:intergenic 30.0%
CTTCATCTCATTATACTACA+AGG + chr4_4:65635749-65635768 Msa0695930:three_prime_UTR 30.0%
TGAACAAGTACAACGATAAC+TGG + chr4_4:65635200-65635219 Msa0695930:CDS 35.0%
ACGATAACTGGAAGAAACAA+TGG + chr4_4:65635212-65635231 Msa0695930:CDS 35.0%
AACTGGAAGAAACAATGGTT+CGG + chr4_4:65635217-65635236 Msa0695930:CDS 35.0%
TTAAGCAACGTTGAAAAAGC+AGG + chr4_4:65635313-65635332 Msa0695930:CDS 35.0%
!!! ACTAGGACTTTTTTCTAAGG+CGG + chr4_4:65635387-65635406 Msa0695930:CDS 35.0%
ACAAGAGTAGTAGAATCATC+AGG - chr4_4:65635526-65635545 None:intergenic 35.0%
! TACTACTCTTGTTGTAGTTC+AGG + chr4_4:65635534-65635553 Msa0695930:CDS 35.0%
!!! GTACACATGTTTTTTAACCG+CGG + chr4_4:65635647-65635666 Msa0695930:three_prime_UTR 35.0%
TGAACAAGTACAACGATAAC+TGG + chr4_4:65635200-65635219 Msa0695930:CDS 35.0%
ACGATAACTGGAAGAAACAA+TGG + chr4_4:65635212-65635231 Msa0695930:CDS 35.0%
AACTGGAAGAAACAATGGTT+CGG + chr4_4:65635217-65635236 Msa0695930:CDS 35.0%
TTAAGCAACGTTGAAAAAGC+AGG + chr4_4:65635313-65635332 Msa0695930:CDS 35.0%
!!! ACTAGGACTTTTTTCTAAGG+CGG + chr4_4:65635387-65635406 Msa0695930:CDS 35.0%
ACAAGAGTAGTAGAATCATC+AGG - chr4_4:65635526-65635545 None:intergenic 35.0%
! TACTACTCTTGTTGTAGTTC+AGG + chr4_4:65635534-65635553 Msa0695930:CDS 35.0%
!!! GTACACATGTTTTTTAACCG+CGG + chr4_4:65635647-65635666 Msa0695930:three_prime_UTR 35.0%
! AAAGGTATGAGCAATACGAC+TGG + chr4_4:65634842-65634861 Msa0695930:five_prime_UTR 40.0%
CAACAAGATCGCACATGAAA+AGG + chr4_4:65634877-65634896 Msa0695930:five_prime_UTR 40.0%
! ACTCTATTGATTGTCCTACG+TGG + chr4_4:65634916-65634935 Msa0695930:five_prime_UTR 40.0%
TAGTGTGGATGTGTTGAAGA+TGG - chr4_4:65635009-65635028 None:intergenic 40.0%
AAGGTTTATTGGAGGGAGTA+GGG - chr4_4:65635063-65635082 None:intergenic 40.0%
AAAGGTTTATTGGAGGGAGT+AGG - chr4_4:65635064-65635083 None:intergenic 40.0%
ACGGTGAAAGGTTTATTGGA+GGG - chr4_4:65635070-65635089 None:intergenic 40.0%
GAAGACGGTGAAAGGTTTAT+TGG - chr4_4:65635074-65635093 None:intergenic 40.0%
AGGAAGTGAAGAAGTAGAAG+TGG + chr4_4:65635258-65635277 Msa0695930:CDS 40.0%
CTCTCTTCAATCGAGAAACT+AGG + chr4_4:65635370-65635389 Msa0695930:CDS 40.0%
!!! TTTTCTAAGGCGGAAGAACT+TGG + chr4_4:65635397-65635416 Msa0695930:CDS 40.0%
TTTGCTGGATCTGTTGTTCT+CGG + chr4_4:65635598-65635617 Msa0695930:CDS 40.0%
! AAAGGTATGAGCAATACGAC+TGG + chr4_4:65634842-65634861 Msa0695930:five_prime_UTR 40.0%
CAACAAGATCGCACATGAAA+AGG + chr4_4:65634877-65634896 Msa0695930:five_prime_UTR 40.0%
! ACTCTATTGATTGTCCTACG+TGG + chr4_4:65634916-65634935 Msa0695930:five_prime_UTR 40.0%
TAGTGTGGATGTGTTGAAGA+TGG - chr4_4:65635009-65635028 None:intergenic 40.0%
AAGGTTTATTGGAGGGAGTA+GGG - chr4_4:65635063-65635082 None:intergenic 40.0%
AAAGGTTTATTGGAGGGAGT+AGG - chr4_4:65635064-65635083 None:intergenic 40.0%
ACGGTGAAAGGTTTATTGGA+GGG - chr4_4:65635070-65635089 None:intergenic 40.0%
GAAGACGGTGAAAGGTTTAT+TGG - chr4_4:65635074-65635093 None:intergenic 40.0%
AGGAAGTGAAGAAGTAGAAG+TGG + chr4_4:65635258-65635277 Msa0695930:CDS 40.0%
CTCTCTTCAATCGAGAAACT+AGG + chr4_4:65635370-65635389 Msa0695930:CDS 40.0%
!!! TTTTCTAAGGCGGAAGAACT+TGG + chr4_4:65635397-65635416 Msa0695930:CDS 40.0%
TTTGCTGGATCTGTTGTTCT+CGG + chr4_4:65635598-65635617 Msa0695930:CDS 40.0%
GTATGAGCAATACGACTGGT+GGG + chr4_4:65634846-65634865 Msa0695930:five_prime_UTR 45.0%
TAGGGAATGAGCGATAGTGA+CGG - chr4_4:65635045-65635064 None:intergenic 45.0%
GACGGTGAAAGGTTTATTGG+AGG - chr4_4:65635071-65635090 None:intergenic 45.0%
!! TACCTTCTTTTTGGGAGCCA+TGG - chr4_4:65635098-65635117 None:intergenic 45.0%
! AAGAAACAATGGTTCGGAGC+AGG + chr4_4:65635223-65635242 Msa0695930:CDS 45.0%
GGAGCAGGAATATTCTACGA+AGG + chr4_4:65635238-65635257 Msa0695930:CDS 45.0%
GTATGAGCAATACGACTGGT+GGG + chr4_4:65634846-65634865 Msa0695930:five_prime_UTR 45.0%
TAGGGAATGAGCGATAGTGA+CGG - chr4_4:65635045-65635064 None:intergenic 45.0%
GACGGTGAAAGGTTTATTGG+AGG - chr4_4:65635071-65635090 None:intergenic 45.0%
!! TACCTTCTTTTTGGGAGCCA+TGG - chr4_4:65635098-65635117 None:intergenic 45.0%
! AAGAAACAATGGTTCGGAGC+AGG + chr4_4:65635223-65635242 Msa0695930:CDS 45.0%
GGAGCAGGAATATTCTACGA+AGG + chr4_4:65635238-65635257 Msa0695930:CDS 45.0%
GGTATGAGCAATACGACTGG+TGG + chr4_4:65634845-65634864 Msa0695930:five_prime_UTR 50.0%
TGCAATCTCAACTGCCACGT+AGG - chr4_4:65634933-65634952 None:intergenic 50.0%
TGAAGATGGAGAGCTGAGGT+TGG - chr4_4:65634995-65635014 None:intergenic 50.0%
GTGTTGAAGATGGAGAGCTG+AGG - chr4_4:65634999-65635018 None:intergenic 50.0%
! GAATGAGCGATAGTGACGGA+GGG - chr4_4:65635041-65635060 None:intergenic 50.0%
GACGCCGAATTCTTCAGCTT+TGG - chr4_4:65635347-65635366 None:intergenic 50.0%
!! TTGCTGCTGCTCTTGGTGTT+GGG + chr4_4:65635563-65635582 Msa0695930:CDS 50.0%
GGTATGAGCAATACGACTGG+TGG + chr4_4:65634845-65634864 Msa0695930:five_prime_UTR 50.0%
TGCAATCTCAACTGCCACGT+AGG - chr4_4:65634933-65634952 None:intergenic 50.0%
TGAAGATGGAGAGCTGAGGT+TGG - chr4_4:65634995-65635014 None:intergenic 50.0%
GTGTTGAAGATGGAGAGCTG+AGG - chr4_4:65634999-65635018 None:intergenic 50.0%
! GAATGAGCGATAGTGACGGA+GGG - chr4_4:65635041-65635060 None:intergenic 50.0%
GACGCCGAATTCTTCAGCTT+TGG - chr4_4:65635347-65635366 None:intergenic 50.0%
!! TTGCTGCTGCTCTTGGTGTT+GGG + chr4_4:65635563-65635582 Msa0695930:CDS 50.0%
GGTTGGAGTAGGAACAGCCA+TGG - chr4_4:65634978-65634997 None:intergenic 55.0%
TGGAGAGCTGAGGTTGGAGT+AGG - chr4_4:65634989-65635008 None:intergenic 55.0%
GGAATGAGCGATAGTGACGG+AGG - chr4_4:65635042-65635061 None:intergenic 55.0%
ACCTTTCACCGTCTTCGCCA+TGG + chr4_4:65635078-65635097 Msa0695930:CDS 55.0%
TTTGGGAGCCATGGCGAAGA+CGG - chr4_4:65635089-65635108 None:intergenic 55.0%
CGCCATGGCTCCCAAAAAGA+AGG + chr4_4:65635093-65635112 Msa0695930:CDS 55.0%
CAAGACGGAAGGAGAGACTG+CGG - chr4_4:65635449-65635468 None:intergenic 55.0%
TCCTTCCGTCTTGGCTTCTC+TGG + chr4_4:65635456-65635475 Msa0695930:CDS 55.0%
AAGCGCCAGAGAAGCCAAGA+CGG - chr4_4:65635464-65635483 None:intergenic 55.0%
! GCAACAGCAGCCAAAAGCGT+CGG - chr4_4:65635487-65635506 None:intergenic 55.0%
!! GCTTTTGGCTGCTGTTGCGA+CGG + chr4_4:65635489-65635508 Msa0695930:CDS 55.0%
GCTGTTGTTGCTGCTGCTCT+TGG + chr4_4:65635556-65635575 Msa0695930:CDS 55.0%
! GTTGCTGCTGCTCTTGGTGT+TGG + chr4_4:65635562-65635581 Msa0695930:CDS 55.0%
!! TGCTGCTGCTCTTGGTGTTG+GGG + chr4_4:65635564-65635583 Msa0695930:CDS 55.0%
!! CTCTTGGTGTTGGGGCTGTT+GGG + chr4_4:65635572-65635591 Msa0695930:CDS 55.0%
GCTGGATCTGTTGTTCTCGG+CGG + chr4_4:65635601-65635620 Msa0695930:CDS 55.0%
CTGGATCTGTTGTTCTCGGC+GGG + chr4_4:65635602-65635621 Msa0695930:CDS 55.0%
GGTTGGAGTAGGAACAGCCA+TGG - chr4_4:65634978-65634997 None:intergenic 55.0%
TGGAGAGCTGAGGTTGGAGT+AGG - chr4_4:65634989-65635008 None:intergenic 55.0%
GGAATGAGCGATAGTGACGG+AGG - chr4_4:65635042-65635061 None:intergenic 55.0%
ACCTTTCACCGTCTTCGCCA+TGG + chr4_4:65635078-65635097 Msa0695930:CDS 55.0%
TTTGGGAGCCATGGCGAAGA+CGG - chr4_4:65635089-65635108 None:intergenic 55.0%
CGCCATGGCTCCCAAAAAGA+AGG + chr4_4:65635093-65635112 Msa0695930:CDS 55.0%
CAAGACGGAAGGAGAGACTG+CGG - chr4_4:65635449-65635468 None:intergenic 55.0%
TCCTTCCGTCTTGGCTTCTC+TGG + chr4_4:65635456-65635475 Msa0695930:CDS 55.0%
AAGCGCCAGAGAAGCCAAGA+CGG - chr4_4:65635464-65635483 None:intergenic 55.0%
! GCAACAGCAGCCAAAAGCGT+CGG - chr4_4:65635487-65635506 None:intergenic 55.0%
!! GCTTTTGGCTGCTGTTGCGA+CGG + chr4_4:65635489-65635508 Msa0695930:CDS 55.0%
GCTGTTGTTGCTGCTGCTCT+TGG + chr4_4:65635556-65635575 Msa0695930:CDS 55.0%
! GTTGCTGCTGCTCTTGGTGT+TGG + chr4_4:65635562-65635581 Msa0695930:CDS 55.0%
!! TGCTGCTGCTCTTGGTGTTG+GGG + chr4_4:65635564-65635583 Msa0695930:CDS 55.0%
!! CTCTTGGTGTTGGGGCTGTT+GGG + chr4_4:65635572-65635591 Msa0695930:CDS 55.0%
GCTGGATCTGTTGTTCTCGG+CGG + chr4_4:65635601-65635620 Msa0695930:CDS 55.0%
CTGGATCTGTTGTTCTCGGC+GGG + chr4_4:65635602-65635621 Msa0695930:CDS 55.0%
AGCGCGCGCATCATCATCCA+TGG + chr4_4:65634958-65634977 Msa0695930:exon 60.0%
! AGCGATAGTGACGGAGGGTG+CGG - chr4_4:65635036-65635055 None:intergenic 60.0%
GCCATGGCGAAGACGGTGAA+AGG - chr4_4:65635082-65635101 None:intergenic 60.0%
CGCAGTCTCTCCTTCCGTCT+TGG + chr4_4:65635447-65635466 Msa0695930:CDS 60.0%
GCCAGAGAAGCCAAGACGGA+AGG - chr4_4:65635460-65635479 None:intergenic 60.0%
! TCTGGCGCTTCCGACGCTTT+TGG + chr4_4:65635474-65635493 Msa0695930:CDS 60.0%
TTTGGCTGCTGTTGCGACGG+TGG + chr4_4:65635492-65635511 Msa0695930:CDS 60.0%
!! GCTCTTGGTGTTGGGGCTGT+TGG + chr4_4:65635571-65635590 Msa0695930:CDS 60.0%
! GGGGCTGTTGGGTTGTTTGC+TGG + chr4_4:65635583-65635602 Msa0695930:CDS 60.0%
!! TGTTGTTCTCGGCGGGTTGC+AGG + chr4_4:65635609-65635628 Msa0695930:CDS 60.0%
AGCGCGCGCATCATCATCCA+TGG + chr4_4:65634958-65634977 Msa0695930:exon 60.0%
! AGCGATAGTGACGGAGGGTG+CGG - chr4_4:65635036-65635055 None:intergenic 60.0%
GCCATGGCGAAGACGGTGAA+AGG - chr4_4:65635082-65635101 None:intergenic 60.0%
CGCAGTCTCTCCTTCCGTCT+TGG + chr4_4:65635447-65635466 Msa0695930:CDS 60.0%
GCCAGAGAAGCCAAGACGGA+AGG - chr4_4:65635460-65635479 None:intergenic 60.0%
! TCTGGCGCTTCCGACGCTTT+TGG + chr4_4:65635474-65635493 Msa0695930:CDS 60.0%
TTTGGCTGCTGTTGCGACGG+TGG + chr4_4:65635492-65635511 Msa0695930:CDS 60.0%
!! GCTCTTGGTGTTGGGGCTGT+TGG + chr4_4:65635571-65635590 Msa0695930:CDS 60.0%
! GGGGCTGTTGGGTTGTTTGC+TGG + chr4_4:65635583-65635602 Msa0695930:CDS 60.0%
!! TGTTGTTCTCGGCGGGTTGC+AGG + chr4_4:65635609-65635628 Msa0695930:CDS 60.0%
! GGAGGGTGCGGTGGTTAGTG+TGG - chr4_4:65635024-65635043 None:intergenic 65.0%
! GATAGTGACGGAGGGTGCGG+TGG - chr4_4:65635033-65635052 None:intergenic 65.0%
!! TGTTCTCGGCGGGTTGCAGG+AGG + chr4_4:65635612-65635631 Msa0695930:CDS 65.0%
! GGAGGGTGCGGTGGTTAGTG+TGG - chr4_4:65635024-65635043 None:intergenic 65.0%
! GATAGTGACGGAGGGTGCGG+TGG - chr4_4:65635033-65635052 None:intergenic 65.0%
!! TGTTCTCGGCGGGTTGCAGG+AGG + chr4_4:65635612-65635631 Msa0695930:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 65634823 65635812 65634823 ID=Msa0695930;Name=Msa0695930
chr4_4 mRNA 65634823 65635812 65634823 ID=Msa0695930-mRNA-1;Parent=Msa0695930;Name=Msa0695930-mRNA-1;_AED=0.04;_eAED=0.04;_QI=154|1|1|1|1|1|2|170|193
chr4_4 exon 65634823 65635114 65634823 ID=Msa0695930-mRNA-1:exon:18967;Parent=Msa0695930-mRNA-1
chr4_4 exon 65635199 65635812 65635199 ID=Msa0695930-mRNA-1:exon:18968;Parent=Msa0695930-mRNA-1
chr4_4 five_prime_UTR 65634823 65634976 65634823 ID=Msa0695930-mRNA-1:five_prime_utr;Parent=Msa0695930-mRNA-1
chr4_4 CDS 65634977 65635114 65634977 ID=Msa0695930-mRNA-1:cds;Parent=Msa0695930-mRNA-1
chr4_4 CDS 65635199 65635642 65635199 ID=Msa0695930-mRNA-1:cds;Parent=Msa0695930-mRNA-1
chr4_4 three_prime_UTR 65635643 65635812 65635643 ID=Msa0695930-mRNA-1:three_prime_utr;Parent=Msa0695930-mRNA-1
Gene Sequence

>Msa0695930

ATGGCTGTTCCTACTCCAACCTCAGCTCTCCATCTTCAACACATCCACACTAACCACCGCACCCTCCGTCACTATCGCTCATTCCCTACTCCCTCCAATAAACCTTTCACCGTCTTCGCCATGGCTCCCAAAAAGAAGGTGAACAAGTACAACGATAACTGGAAGAAACAATGGTTCGGAGCAGGAATATTCTACGAAGGAAGTGAAGAAGTAGAAGTGGACGTATTCAAGAAACTCGAGAAACGCAAAGTTTTAAGCAACGTTGAAAAAGCAGGATTATTATCCAAAGCTGAAGAATTCGGCGTCACGCTCTCTTCAATCGAGAAACTAGGACTTTTTTCTAAGGCGGAAGAACTTGGCTTACTCAGCTTATTAGAGAAACTCGCCGCAGTCTCTCCTTCCGTCTTGGCTTCTCTGGCGCTTCCGACGCTTTTGGCTGCTGTTGCGACGGTGGTTCTTGTTCCTGATGATTCTACTACTCTTGTTGTAGTTCAGGCTGTTGTTGCTGCTGCTCTTGGTGTTGGGGCTGTTGGGTTGTTTGCTGGATCTGTTGTTCTCGGCGGGTTGCAGGAGGCTGATTGA

Protein sequence

>Msa0695930

MAVPTPTSALHLQHIHTNHRTLRHYRSFPTPSNKPFTVFAMAPKKKVNKYNDNWKKQWFGAGIFYEGSEEVEVDVFKKLEKRKVLSNVEKAGLLSKAEEFGVTLSSIEKLGLFSKAEELGLLSLLEKLAAVSPSVLASLALPTLLAAVATVVLVPDDSTTLVVVQAVVAAALGVGAVGLFAGSVVLGGLQEAD*