AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0081300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081300 MtrunA17_Chr1g0193711 96.813 251 8 0 1 251 1 251 0.0 503
Msa0081300 MtrunA17_Chr7g0270991 69.650 257 71 5 1 251 6 261 3.03e-118 338
Msa0081300 MtrunA17_Chr1g0213971 64.677 201 63 3 52 249 48 243 2.28e-88 262
Msa0081300 MtrunA17_Chr3g0104751 65.027 183 55 2 74 249 23 203 8.57e-78 233
Msa0081300 MtrunA17_Chr3g0113441 63.842 177 54 3 78 247 58 231 1.11e-72 221
Msa0081300 MtrunA17_Chr7g0274841 67.808 146 40 1 86 224 5 150 5.02e-69 210
Msa0081300 MtrunA17_Chr4g0038431 65.101 149 45 1 83 224 2 150 1.10e-68 209
Msa0081300 MtrunA17_Chr3g0145501 66.438 146 42 1 86 224 13 158 4.23e-67 206
Msa0081300 MtrunA17_Chr8g0353571 58.084 167 63 3 87 247 20 185 3.88e-62 193
Msa0081300 MtrunA17_Chr7g0260441 59.763 169 58 2 87 247 9 175 2.42e-61 204
Msa0081300 MtrunA17_Chr4g0045321 56.977 172 65 2 85 248 4 174 2.05e-60 194
Msa0081300 MtrunA17_Chr8g0374621 57.647 170 63 2 86 247 5 173 3.07e-60 194
Msa0081300 MtrunA17_Chr4g0037281 52.332 193 79 4 68 248 25 216 3.88e-59 187
Msa0081300 MtrunA17_Chr1g0149061 46.409 181 86 3 79 251 1 178 1.34e-41 151
Msa0081300 MtrunA17_Chr2g0321111 43.850 187 98 6 58 243 431 611 1.02e-40 147
Msa0081300 MtrunA17_Chr3g0138061 47.399 173 81 2 87 251 12 182 2.01e-40 148
Msa0081300 MtrunA17_Chr7g0266721 49.664 149 69 5 97 244 17 160 1.02e-39 135
Msa0081300 MtrunA17_Chr8g0351571 50.345 145 64 5 99 241 10 148 6.83e-33 117
Msa0081300 MtrunA17_Chr5g0401141 47.222 144 70 5 99 241 354 492 2.10e-29 115
Msa0081300 MtrunA17_Chr3g0122871 62.712 59 22 0 170 228 55 113 4.11e-23 90.9
Msa0081300 MtrunA17_Chr2g0288371 44.872 156 74 8 92 242 15 163 1.29e-21 93.2
Msa0081300 MtrunA17_Chr6g0484281 37.500 168 83 9 97 250 8 167 2.03e-16 78.2
Msa0081300 MtrunA17_Chr8g0357591 36.905 168 84 9 97 250 8 167 2.83e-15 75.1
Msa0081300 MtrunA17_Chr2g0305071 27.094 203 107 8 71 234 44 244 1.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0081300 AT3G62030.3 62.121 264 80 7 1 250 1 258 7.44e-106 307
Msa0081300 AT3G62030.1 61.887 265 80 7 1 250 1 259 1.07e-105 306
Msa0081300 AT3G62030.2 70.370 216 55 4 42 251 101 313 1.04e-104 306
Msa0081300 AT5G13120.2 64.615 195 61 3 62 249 59 252 6.93e-87 259
Msa0081300 AT5G13120.1 64.615 195 61 3 62 249 63 256 8.72e-87 258
Msa0081300 AT2G29960.1 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa0081300 AT2G29960.3 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa0081300 AT5G58710.1 66.286 175 50 2 82 249 32 204 5.69e-76 229
Msa0081300 AT3G55920.1 58.462 195 71 3 62 249 37 228 1.04e-71 219
Msa0081300 AT2G21130.1 62.722 169 54 2 86 247 6 172 2.11e-71 216
Msa0081300 AT3G56070.1 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa0081300 AT3G56070.2 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa0081300 AT4G38740.1 60.947 169 57 2 86 247 5 171 2.96e-69 211
Msa0081300 AT2G16600.1 66.438 146 42 1 86 224 6 151 1.36e-68 209
Msa0081300 AT2G29960.2 60.428 187 50 4 75 249 17 191 8.57e-68 208
Msa0081300 AT4G34870.1 57.396 169 63 2 86 247 5 171 1.34e-62 194
Msa0081300 AT3G63400.2 57.955 176 64 2 79 246 1 174 2.07e-61 198
Msa0081300 AT2G38730.1 57.485 167 64 3 87 247 34 199 4.71e-61 191
Msa0081300 AT4G34960.1 55.682 176 70 2 82 250 44 218 1.73e-60 190
Msa0081300 AT3G63400.3 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0081300 AT3G63400.4 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0081300 AT3G63400.1 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0081300 AT2G15790.1 58.721 172 62 2 85 248 4 174 1.06e-59 193
Msa0081300 AT2G16600.2 61.871 139 38 1 86 224 6 129 2.57e-58 182
Msa0081300 AT4G34960.2 60.156 128 44 1 82 202 44 171 1.30e-47 155
Msa0081300 AT3G44600.1 44.920 187 96 6 58 243 445 625 3.46e-41 149
Msa0081300 AT2G36130.1 48.993 149 70 5 97 244 17 160 3.49e-39 134
Msa0081300 AT3G22920.1 43.605 172 80 5 85 247 4 167 2.11e-35 126
Msa0081300 AT4G32420.1 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0081300 AT4G32420.5 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0081300 AT4G32420.3 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0081300 AT4G32420.6 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0081300 AT4G32420.4 47.403 154 73 1 79 224 1 154 4.89e-34 130
Msa0081300 AT1G01940.1 51.515 132 57 4 99 228 10 136 1.36e-32 117
Msa0081300 AT5G67530.1 44.898 147 75 5 99 244 353 494 1.74e-29 116
Msa0081300 AT4G33060.1 48.800 125 56 5 92 213 15 134 7.76e-26 105
Msa0081300 AT1G53720.2 36.970 165 88 7 97 250 8 167 5.06e-17 79.7
Msa0081300 AT1G53720.1 36.970 165 88 7 97 250 8 167 6.51e-17 80.1
Msa0081300 AT3G66654.4 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0081300 AT3G66654.2 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0081300 AT3G66654.3 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0081300 AT3G66654.1 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0081300 AT3G66654.5 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0081300 AT2G47320.1 31.818 132 83 4 99 230 87 211 7.31e-11 60.8

Find 75 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCAGAACCTTCTTTC+TGG 0.154886 1_2:+59792658 Msa0081300:CDS
CAATTAATGTATAAGGATTT+TGG 0.155123 1_2:-59795579 None:intergenic
AGGATTGTTATTGGCCTATT+TGG 0.177067 1_2:+59793495 Msa0081300:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 1_2:+59793720 Msa0081300:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 1_2:+59795211 Msa0081300:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 1_2:-59793529 None:intergenic
GTTAATTATAGTGAGAAAAT+TGG 0.213849 1_2:+59795647 Msa0081300:three_prime_UTR
TCACTTCAGCTGAAACTTAT+AGG 0.216930 1_2:-59792509 None:intergenic
AATTGACTGCCGTTACTATT+AGG 0.258601 1_2:-59794152 None:intergenic
GCAGTTAAGGAGGGTGGTTT+TGG 0.262552 1_2:+59795404 Msa0081300:three_prime_UTR
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 1_2:+59793486 Msa0081300:CDS
GGTAGTTCAATTCCTGTGTT+TGG 0.318369 1_2:+59795440 Msa0081300:three_prime_UTR
AAAATGACAATTAATGTATA+AGG 0.322234 1_2:-59795586 None:intergenic
GAAAACCTTGCTTGTTACTT+TGG 0.335769 1_2:-59793439 None:intergenic
TCATTACGCGGCTAGGCTTT+CGG 0.339565 1_2:+59793214 Msa0081300:CDS
AACCACGCGTGTTATCTAAA+AGG 0.362659 1_2:-59792481 None:intergenic
TGGGAACAACATCTCCAAAT+AGG 0.365016 1_2:-59793509 None:intergenic
AATGTGGCACAAAACTTTCT+AGG 0.369756 1_2:-59792577 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 1_2:+59793873 Msa0081300:CDS
AATTTATGCTTCTGAACTGT+TGG 0.402995 1_2:+59795617 Msa0081300:three_prime_UTR
AAGCGAAATCAATCACTTCT+CGG 0.414942 1_2:+59793252 Msa0081300:CDS
TGTCAATTACAATGCAGTTA+AGG 0.425790 1_2:+59795391 Msa0081300:three_prime_UTR
TTCTGGTTTCAATGCTGTCC+AGG 0.432366 1_2:+59792675 Msa0081300:CDS
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 1_2:+59793670 Msa0081300:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 1_2:+59795331 Msa0081300:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.441576 1_2:+59793459 Msa0081300:CDS
AGTCTGCTAATGCATAATAT+AGG 0.446327 1_2:-59795551 None:intergenic
ACTCGAGTGTGAAGAAGATT+AGG 0.448639 1_2:+59792547 Msa0081300:five_prime_UTR
ATCAAAGATTTCATGATTCA+GGG 0.450983 1_2:+59793721 Msa0081300:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 1_2:+59795226 Msa0081300:CDS
ATCTTTGTTCTCAACACAGT+TGG 0.459490 1_2:+59792633 Msa0081300:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 1_2:+59793726 Msa0081300:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 1_2:+59793664 Msa0081300:intron
GGATGCAGTAAATTGTCATC+AGG 0.485711 1_2:+59793188 Msa0081300:CDS
AATAATTAAATGCCACTGAA+AGG 0.490665 1_2:+59795487 Msa0081300:three_prime_UTR
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 1_2:+59793543 Msa0081300:CDS
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 1_2:+59794104 Msa0081300:intron
ACTGCATCCAAGGTGTGCTC+TGG 0.499496 1_2:-59793174 None:intergenic
ACATGCAAAATTGTTAACTC+TGG 0.506072 1_2:+59795313 Msa0081300:CDS
ATAATTAAATGCCACTGAAA+GGG 0.508280 1_2:+59795488 Msa0081300:three_prime_UTR
TTTAATTGGATGCAGGGAAC+TGG 0.519277 1_2:+59793855 Msa0081300:intron
GCTTACCTGTGCACAAAGCT+CGG 0.530446 1_2:-59793548 None:intergenic
CAGGATATCATTACGCGGCT+AGG 0.536024 1_2:+59793207 Msa0081300:CDS
TTTGATTATGCGATGGAAGG+TGG 0.537643 1_2:-59793704 None:intergenic
TACAATGCAGTTAAGGAGGG+TGG 0.541796 1_2:+59795398 Msa0081300:three_prime_UTR
CATGTTGTAGACTTCATGGT+TGG 0.543936 1_2:+59795189 Msa0081300:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 1_2:+59795231 Msa0081300:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 1_2:-59794122 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 1_2:+59793471 Msa0081300:CDS
ATGACAATTTACTGCATCCA+AGG 0.568939 1_2:-59793184 None:intergenic
CAATTACAATGCAGTTAAGG+AGG 0.570128 1_2:+59795394 Msa0081300:three_prime_UTR
TGAAATCTTTGATTATGCGA+TGG 0.571761 1_2:-59793711 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 1_2:+59793725 Msa0081300:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 1_2:+59795258 Msa0081300:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 1_2:+59793858 Msa0081300:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 1_2:+59794098 Msa0081300:intron
CAGCATTGAAACCAGAAAGA+AGG 0.585026 1_2:-59792669 None:intergenic
TTCGCTAAATGCCCTTTCAG+TGG 0.592657 1_2:-59795499 None:intergenic
ACTGCCGTTACTATTAGGAC+CGG 0.594476 1_2:-59794147 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 1_2:-59793707 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 1_2:+59795280 Msa0081300:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 1_2:+59793475 Msa0081300:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 1_2:+59793739 Msa0081300:CDS
AGCAGTACCAGAGCACACCT+TGG 0.625062 1_2:+59793167 Msa0081300:CDS
AAGAATGTACAGCACTTCAG+AGG 0.635860 1_2:-59795363 None:intergenic
AATTACAATGCAGTTAAGGA+GGG 0.640700 1_2:+59795395 Msa0081300:three_prime_UTR
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 1_2:+59793434 Msa0081300:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 1_2:+59794143 Msa0081300:CDS
AGCAATGACAATCCAAACAC+AGG 0.657721 1_2:-59795452 None:intergenic
AGGATAGATCAACCATCTAG+AGG 0.669924 1_2:-59795343 None:intergenic
AAAGATTTCATGATTCAGGG+AGG 0.670380 1_2:+59793724 Msa0081300:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 1_2:+59793876 Msa0081300:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 1_2:-59795219 None:intergenic
TTGATGGAATGGATGTTGTG+AGG 0.719565 1_2:+59795242 Msa0081300:CDS
GTCATCAGGATATCATTACG+CGG 0.726671 1_2:+59793202 Msa0081300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAAATTTCAA+AGG - chr1_2:59794336-59794355 None:intergenic 10.0%
!! AAAACATATTATTAAAACTT+GGG - chr1_2:59794592-59794611 None:intergenic 10.0%
!!! TTTGTTTTTGTTTTCATTTT+AGG + chr1_2:59793124-59793143 Msa0081300:intron 15.0%
!!! TTGTTTTTGTTTTCATTTTA+GGG + chr1_2:59793125-59793144 Msa0081300:intron 15.0%
!! ACAAATTTAAATCTGAATAA+TGG - chr1_2:59794009-59794028 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG + chr1_2:59794280-59794299 Msa0081300:intron 15.0%
!! GAAAACATATTATTAAAACT+TGG - chr1_2:59794593-59794612 None:intergenic 15.0%
!!! AAATTTGAGTTTTGAAATAT+AGG - chr1_2:59794758-59794777 None:intergenic 15.0%
!! AAAATGACAATTAATGTATA+AGG - chr1_2:59795589-59795608 None:intergenic 15.0%
!! GTTTAATAAGTCTTTAAATG+TGG + chr1_2:59792989-59793008 Msa0081300:intron 20.0%
!! TGTAAATGTACATTGTTAAT+GGG + chr1_2:59793092-59793111 Msa0081300:intron 20.0%
!!! TGTTTTTGTTTTCATTTTAG+GGG + chr1_2:59793126-59793145 Msa0081300:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG + chr1_2:59793566-59793585 Msa0081300:intron 20.0%
!!! CACATCAAATATGTTTTAAT+TGG + chr1_2:59793841-59793860 Msa0081300:intron 20.0%
!!! TGTCATTTTAATCTTTTTAC+TGG + chr1_2:59794026-59794045 Msa0081300:intron 20.0%
!! TTCATAAAGTAATAGAAGAT+GGG - chr1_2:59794210-59794229 None:intergenic 20.0%
!! ATTCATAAAGTAATAGAAGA+TGG - chr1_2:59794211-59794230 None:intergenic 20.0%
!! ATTACTTTATGAATCAGATA+AGG + chr1_2:59794217-59794236 Msa0081300:intron 20.0%
!! TTACTTTATGAATCAGATAA+GGG + chr1_2:59794218-59794237 Msa0081300:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG - chr1_2:59794406-59794425 None:intergenic 20.0%
!!! AGCATTTAGAATAACTTATT+CGG - chr1_2:59794442-59794461 None:intergenic 20.0%
!! AATATTCCTTGTATGTAAAA+GGG - chr1_2:59794628-59794647 None:intergenic 20.0%
!! TAATATTCCTTGTATGTAAA+AGG - chr1_2:59794629-59794648 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG + chr1_2:59794629-59794648 Msa0081300:intron 20.0%
!! TTACATACAAGGAATATTAT+GGG + chr1_2:59794630-59794649 Msa0081300:intron 20.0%
!!! TTTTTATGGATTTTAAACTG+TGG + chr1_2:59794799-59794818 Msa0081300:intron 20.0%
!!! CAATTAATGTATAAGGATTT+TGG - chr1_2:59795582-59795601 None:intergenic 20.0%
!! GTTAATTATAGTGAGAAAAT+TGG + chr1_2:59795647-59795666 Msa0081300:three_prime_UTR 20.0%
! ATAAGAATTAGATAGTAACC+TGG - chr1_2:59792696-59792715 None:intergenic 25.0%
!! TTAAGGTGTTTATTCAAACA+GGG - chr1_2:59792741-59792760 None:intergenic 25.0%
!! ATTAAGGTGTTTATTCAAAC+AGG - chr1_2:59792742-59792761 None:intergenic 25.0%
! CTGTAAATGTACATTGTTAA+TGG + chr1_2:59793091-59793110 Msa0081300:intron 25.0%
!! CCAAATCACGTAATTTTTAA+TGG - chr1_2:59793314-59793333 None:intergenic 25.0%
! CCATTAAAAATTACGTGATT+TGG + chr1_2:59793311-59793330 Msa0081300:intron 25.0%
!! ATTTCGTTTGCAGAAAATTT+TGG + chr1_2:59793335-59793354 Msa0081300:intron 25.0%
!! AAAATTTTGGATAGCCAATT+CGG + chr1_2:59793348-59793367 Msa0081300:intron 25.0%
!! ATTGGTTTCATTATCTTACA+TGG + chr1_2:59793385-59793404 Msa0081300:intron 25.0%
!! GTTTTCTTTGATGTAGTTAT+TGG + chr1_2:59793456-59793475 Msa0081300:CDS 25.0%
! AATCAAAGATTTCATGATTC+AGG + chr1_2:59793720-59793739 Msa0081300:CDS 25.0%
! ATCAAAGATTTCATGATTCA+GGG + chr1_2:59793721-59793740 Msa0081300:CDS 25.0%
! AGCGTACTAACAAAATATAA+CGG - chr1_2:59793776-59793795 None:intergenic 25.0%
!!! AATATGTTTTAATTGGATGC+AGG + chr1_2:59793848-59793867 Msa0081300:intron 25.0%
!!! ATATGTTTTAATTGGATGCA+GGG + chr1_2:59793849-59793868 Msa0081300:intron 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG + chr1_2:59793983-59794002 Msa0081300:intron 25.0%
!!! ATTTTTTATTTGCACTGTAC+CGG + chr1_2:59794172-59794191 Msa0081300:CDS 25.0%
! TACTTTATGAATCAGATAAG+GGG + chr1_2:59794219-59794238 Msa0081300:intron 25.0%
!!! CTGGAAATGTATTTTTAAGT+GGG + chr1_2:59794523-59794542 Msa0081300:intron 25.0%
! AACTCAAAAAACAACTTGTA+AGG - chr1_2:59794561-59794580 None:intergenic 25.0%
!!! TACAAGTTGTTTTTTGAGTT+AGG + chr1_2:59794561-59794580 Msa0081300:intron 25.0%
! CATATTATTAAAACTTGGGT+TGG - chr1_2:59794588-59794607 None:intergenic 25.0%
!!! CTAAAAGTCTGTACTTTTTA+TGG + chr1_2:59794785-59794804 Msa0081300:intron 25.0%
! TTGACCTACTGAAAAAATAA+AGG + chr1_2:59794839-59794858 Msa0081300:intron 25.0%
! ATAATTGCATTTGTGAGATT+GGG - chr1_2:59794882-59794901 None:intergenic 25.0%
! TATAATTGCATTTGTGAGAT+TGG - chr1_2:59794883-59794902 None:intergenic 25.0%
! CAATTGCTACAATGTTATAT+TGG + chr1_2:59794916-59794935 Msa0081300:intron 25.0%
! TTTGACAATTTAACATCAAC+AGG + chr1_2:59794950-59794969 Msa0081300:intron 25.0%
! TTGACAATTTAACATCAACA+GGG + chr1_2:59794951-59794970 Msa0081300:intron 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG - chr1_2:59795307-59795326 None:intergenic 25.0%
!! AACAATTTTGCATGTTTTCA+AGG - chr1_2:59795308-59795327 None:intergenic 25.0%
! AATAATTAAATGCCACTGAA+AGG + chr1_2:59795487-59795506 Msa0081300:three_prime_UTR 25.0%
! ATAATTAAATGCCACTGAAA+GGG + chr1_2:59795488-59795507 Msa0081300:three_prime_UTR 25.0%
!!! AGCGAATTACTTATTTTGTA+AGG + chr1_2:59795516-59795535 Msa0081300:three_prime_UTR 25.0%
!!! GACAAACAAGCAACTTTTTT+GGG - chr1_2:59792608-59792627 None:intergenic 30.0%
!!! TGACAAACAAGCAACTTTTT+TGG - chr1_2:59792609-59792628 None:intergenic 30.0%
AAAAAGTTGCTTGTTTGTCA+TGG + chr1_2:59792609-59792628 Msa0081300:exon 30.0%
ATGCTATAAGCTGCAAATTA+AGG - chr1_2:59792758-59792777 None:intergenic 30.0%
! GCATAAGAATGTGTTACTAA+AGG + chr1_2:59793065-59793084 Msa0081300:intron 30.0%
TTCTTTGATGTAGTTATTGG+AGG + chr1_2:59793459-59793478 Msa0081300:CDS 30.0%
! TATGAGTATTGTGGTGAAAT+TGG + chr1_2:59793603-59793622 Msa0081300:intron 30.0%
TTTGAGAATAATAACTGTGC+AGG + chr1_2:59793655-59793674 Msa0081300:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG - chr1_2:59793714-59793733 None:intergenic 30.0%
TACATATACACATGATGCTA+AGG + chr1_2:59793802-59793821 Msa0081300:intron 30.0%
ACATATACACATGATGCTAA+GGG + chr1_2:59793803-59793822 Msa0081300:intron 30.0%
CCACTTAAAAATACATTTCC+AGG - chr1_2:59794525-59794544 None:intergenic 30.0%
!! CCTGGAAATGTATTTTTAAG+TGG + chr1_2:59794522-59794541 Msa0081300:intron 30.0%
AAAAACAACTTGTAAGGTGA+GGG - chr1_2:59794555-59794574 None:intergenic 30.0%
AAAAAACAACTTGTAAGGTG+AGG - chr1_2:59794556-59794575 None:intergenic 30.0%
!! AAAAGTACAGACTTTTAGCT+AGG - chr1_2:59794783-59794802 None:intergenic 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG - chr1_2:59794846-59794865 None:intergenic 30.0%
! TTTTCATGTTGTAGACTTCA+TGG + chr1_2:59795185-59795204 Msa0081300:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG + chr1_2:59795313-59795332 Msa0081300:CDS 30.0%
TGTCAATTACAATGCAGTTA+AGG + chr1_2:59795391-59795410 Msa0081300:three_prime_UTR 30.0%
AATTACAATGCAGTTAAGGA+GGG + chr1_2:59795395-59795414 Msa0081300:three_prime_UTR 30.0%
AGTCTGCTAATGCATAATAT+AGG - chr1_2:59795554-59795573 None:intergenic 30.0%
AATTTATGCTTCTGAACTGT+TGG + chr1_2:59795617-59795636 Msa0081300:three_prime_UTR 30.0%
TCACTTCAGCTGAAACTTAT+AGG - chr1_2:59792512-59792531 None:intergenic 35.0%
AATGTGGCACAAAACTTTCT+AGG - chr1_2:59792580-59792599 None:intergenic 35.0%
!!! ACTTTTTTGGGTGGAAAATG+TGG - chr1_2:59792596-59792615 None:intergenic 35.0%
!!! AAACAAGCAACTTTTTTGGG+TGG - chr1_2:59792605-59792624 None:intergenic 35.0%
ATCTTTGTTCTCAACACAGT+TGG + chr1_2:59792633-59792652 Msa0081300:CDS 35.0%
ATGACAATTTACTGCATCCA+AGG - chr1_2:59793187-59793206 None:intergenic 35.0%
AAGCGAAATCAATCACTTCT+CGG + chr1_2:59793252-59793271 Msa0081300:CDS 35.0%
! GAAAACCTTGCTTGTTACTT+TGG - chr1_2:59793442-59793461 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG + chr1_2:59793495-59793514 Msa0081300:CDS 35.0%
! CGGAAATTCTCAACTGTTTT+GGG - chr1_2:59793531-59793550 None:intergenic 35.0%
! TCGGAAATTCTCAACTGTTT+TGG - chr1_2:59793532-59793551 None:intergenic 35.0%
! TTGTCGTTGTATGAGTATTG+TGG + chr1_2:59793594-59793613 Msa0081300:intron 35.0%
ATCTTTGATTATGCGATGGA+AGG - chr1_2:59793710-59793729 None:intergenic 35.0%
AAAGATTTCATGATTCAGGG+AGG + chr1_2:59793724-59793743 Msa0081300:CDS 35.0%
AAGATTTCATGATTCAGGGA+GGG + chr1_2:59793725-59793744 Msa0081300:CDS 35.0%
! TCTTTTTACTGGACTGTCAA+TGG + chr1_2:59794037-59794056 Msa0081300:intron 35.0%
AATTGACTGCCGTTACTATT+AGG - chr1_2:59794155-59794174 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG + chr1_2:59794619-59794638 Msa0081300:intron 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG - chr1_2:59794740-59794759 None:intergenic 35.0%
TGGTTGAGACGCTAAATATT+AGG - chr1_2:59795092-59795111 None:intergenic 35.0%
TGACATGTCCAAATACAACA+TGG - chr1_2:59795222-59795241 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG + chr1_2:59795226-59795245 Msa0081300:CDS 35.0%
CAATTACAATGCAGTTAAGG+AGG + chr1_2:59795394-59795413 Msa0081300:three_prime_UTR 35.0%
! ATCCTTTTAGATAACACGCG+TGG + chr1_2:59792479-59792498 Msa0081300:five_prime_UTR 40.0%
AACCACGCGTGTTATCTAAA+AGG - chr1_2:59792484-59792503 None:intergenic 40.0%
ACTCGAGTGTGAAGAAGATT+AGG + chr1_2:59792547-59792566 Msa0081300:five_prime_UTR 40.0%
! CAGCATTGAAACCAGAAAGA+AGG - chr1_2:59792672-59792691 None:intergenic 40.0%
GGATGCAGTAAATTGTCATC+AGG + chr1_2:59793188-59793207 Msa0081300:CDS 40.0%
GTCATCAGGATATCATTACG+CGG + chr1_2:59793202-59793221 Msa0081300:CDS 40.0%
!! GTTTTGAATCACTGCCGAAT+TGG - chr1_2:59793365-59793384 None:intergenic 40.0%
TCGGCAGTGATTCAAAACAT+TGG + chr1_2:59793367-59793386 Msa0081300:intron 40.0%
!! TACATGGCTGTGTTACTTCT+AGG + chr1_2:59793401-59793420 Msa0081300:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG + chr1_2:59793486-59793505 Msa0081300:CDS 40.0%
TGGGAACAACATCTCCAAAT+AGG - chr1_2:59793512-59793531 None:intergenic 40.0%
AATAACTGTGCAGGAGAGAA+AGG + chr1_2:59793664-59793683 Msa0081300:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG - chr1_2:59793707-59793726 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG + chr1_2:59793726-59793745 Msa0081300:CDS 40.0%
TTTAATTGGATGCAGGGAAC+TGG + chr1_2:59793855-59793874 Msa0081300:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG + chr1_2:59794143-59794162 Msa0081300:CDS 40.0%
AGATGGGAAAATAGTCTCAC+CGG - chr1_2:59794194-59794213 None:intergenic 40.0%
GTCCCACGTTAAATGAGATA+TGG + chr1_2:59794499-59794518 Msa0081300:intron 40.0%
GGCCATATCTCATTTAACGT+GGG - chr1_2:59794504-59794523 None:intergenic 40.0%
AGGCCATATCTCATTTAACG+TGG - chr1_2:59794505-59794524 None:intergenic 40.0%
ACGTTAAATGAGATATGGCC+TGG + chr1_2:59794504-59794523 Msa0081300:intron 40.0%
CATGTTGTAGACTTCATGGT+TGG + chr1_2:59795189-59795208 Msa0081300:intron 40.0%
GACAATCGCCATGTTGTATT+TGG + chr1_2:59795211-59795230 Msa0081300:CDS 40.0%
TGGACATGTCATTGATGGAA+TGG + chr1_2:59795231-59795250 Msa0081300:CDS 40.0%
TTGATGGAATGGATGTTGTG+AGG + chr1_2:59795242-59795261 Msa0081300:CDS 40.0%
AGGATAGATCAACCATCTAG+AGG - chr1_2:59795346-59795365 None:intergenic 40.0%
AAGAATGTACAGCACTTCAG+AGG - chr1_2:59795366-59795385 None:intergenic 40.0%
GGTAGTTCAATTCCTGTGTT+TGG + chr1_2:59795440-59795459 Msa0081300:three_prime_UTR 40.0%
AGCAATGACAATCCAAACAC+AGG - chr1_2:59795455-59795474 None:intergenic 40.0%
CAGAGTCAGAACCTTCTTTC+TGG + chr1_2:59792658-59792677 Msa0081300:CDS 45.0%
!! TTCTGGTTTCAATGCTGTCC+AGG + chr1_2:59792675-59792694 Msa0081300:CDS 45.0%
GCAAGCCAAAGTAACAAGCA+AGG + chr1_2:59793434-59793453 Msa0081300:CDS 45.0%
GTTATTGGAGGTGAATCTGC+TGG + chr1_2:59793471-59793490 Msa0081300:CDS 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG + chr1_2:59793543-59793562 Msa0081300:CDS 45.0%
TGTGCAGGAGAGAAAGGATA+TGG + chr1_2:59793670-59793689 Msa0081300:intron 45.0%
ACTGGTGGAGTCAGTATCTA+TGG + chr1_2:59793873-59793892 Msa0081300:CDS 45.0%
TTCCTTGCAGTGAAGCATGT+TGG + chr1_2:59794098-59794117 Msa0081300:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG - chr1_2:59794125-59794144 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG + chr1_2:59794128-59794147 Msa0081300:CDS 45.0%
ACTGCCGTTACTATTAGGAC+CGG - chr1_2:59794150-59794169 None:intergenic 45.0%
AAGGGGAATCCTTCTGTGTT+TGG + chr1_2:59794236-59794255 Msa0081300:intron 45.0%
AGGGGAATCCTTCTGTGTTT+GGG + chr1_2:59794237-59794256 Msa0081300:intron 45.0%
CCTGTTTACCCAAACACAGA+AGG - chr1_2:59794248-59794267 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG + chr1_2:59794245-59794264 Msa0081300:intron 45.0%
TGTGAGGACACTTGAATCAC+AGG + chr1_2:59795258-59795277 Msa0081300:CDS 45.0%
GAGACAAGCAGCTACAACAA+TGG + chr1_2:59795280-59795299 Msa0081300:CDS 45.0%
TCTGGAGAACTTCCTCTAGA+TGG + chr1_2:59795331-59795350 Msa0081300:CDS 45.0%
TACAATGCAGTTAAGGAGGG+TGG + chr1_2:59795398-59795417 Msa0081300:three_prime_UTR 45.0%
! CAGTTAAGGAGGGTGGTTTT+GGG + chr1_2:59795405-59795424 Msa0081300:three_prime_UTR 45.0%
!! AGTTAAGGAGGGTGGTTTTG+GGG + chr1_2:59795406-59795425 Msa0081300:three_prime_UTR 45.0%
TTCGCTAAATGCCCTTTCAG+TGG - chr1_2:59795502-59795521 None:intergenic 45.0%
CAGGATATCATTACGCGGCT+AGG + chr1_2:59793207-59793226 Msa0081300:CDS 50.0%
TCATTACGCGGCTAGGCTTT+CGG + chr1_2:59793214-59793233 Msa0081300:CDS 50.0%
TTGGAGGTGAATCTGCTGGA+AGG + chr1_2:59793475-59793494 Msa0081300:CDS 50.0%
GCTTACCTGTGCACAAAGCT+CGG - chr1_2:59793551-59793570 None:intergenic 50.0%
AATTGGATGCAGGGAACTGG+TGG + chr1_2:59793858-59793877 Msa0081300:intron 50.0%
GGTGGAGTCAGTATCTATGG+TGG + chr1_2:59793876-59793895 Msa0081300:CDS 50.0%
GACCAACATGCTTCACTGCA+AGG - chr1_2:59794103-59794122 None:intergenic 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG + chr1_2:59794118-59794137 Msa0081300:CDS 50.0%
! GCAGTTAAGGAGGGTGGTTT+TGG + chr1_2:59795404-59795423 Msa0081300:three_prime_UTR 50.0%
AGCAGTACCAGAGCACACCT+TGG + chr1_2:59793167-59793186 Msa0081300:CDS 55.0%
ACTGCATCCAAGGTGTGCTC+TGG - chr1_2:59793177-59793196 None:intergenic 55.0%
GCAGTGAAGCATGTTGGTCC+TGG + chr1_2:59794104-59794123 Msa0081300:intron 55.0%
!!! TAAGGAGGGTGGTTTTGGGG+AGG + chr1_2:59795409-59795428 Msa0081300:three_prime_UTR 55.0%
CAGGGAGGGGACTTCACAGA+AGG + chr1_2:59793739-59793758 Msa0081300:CDS 60.0%
!!! GAGGGTGGTTTTGGGGAGGA+GGG + chr1_2:59795413-59795432 Msa0081300:three_prime_UTR 60.0%
!!! GTGGTTTTGGGGAGGAGGGA+GGG + chr1_2:59795417-59795436 Msa0081300:three_prime_UTR 60.0%
!!! TGGTTTTGGGGAGGAGGGAG+GGG + chr1_2:59795418-59795437 Msa0081300:three_prime_UTR 60.0%
!!! GGAGGGTGGTTTTGGGGAGG+AGG + chr1_2:59795412-59795431 Msa0081300:three_prime_UTR 65.0%
!!! GGTGGTTTTGGGGAGGAGGG+AGG + chr1_2:59795416-59795435 Msa0081300:three_prime_UTR 65.0%
!!! GGTTTTGGGGAGGAGGGAGG+GGG + chr1_2:59795419-59795438 Msa0081300:three_prime_UTR 65.0%
! GTGCGTGCGCGCGCACGTGC+TGG - chr1_2:59795112-59795131 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 59792469 59795679 59792469 ID=Msa0081300;Name=Msa0081300
chr1_2 mRNA 59792469 59795679 59792469 ID=Msa0081300-mRNA-1;Parent=Msa0081300;Name=Msa0081300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|1|1|1|1|1|7|322|251
chr1_2 exon 59792469 59792696 59792469 ID=Msa0081300-mRNA-1:exon:19423;Parent=Msa0081300-mRNA-1
chr1_2 exon 59793146 59793301 59793146 ID=Msa0081300-mRNA-1:exon:19424;Parent=Msa0081300-mRNA-1
chr1_2 exon 59793423 59793564 59793423 ID=Msa0081300-mRNA-1:exon:19425;Parent=Msa0081300-mRNA-1
chr1_2 exon 59793677 59793765 59793677 ID=Msa0081300-mRNA-1:exon:19426;Parent=Msa0081300-mRNA-1
chr1_2 exon 59793870 59793924 59793870 ID=Msa0081300-mRNA-1:exon:19427;Parent=Msa0081300-mRNA-1
chr1_2 exon 59794108 59794193 59794108 ID=Msa0081300-mRNA-1:exon:19428;Parent=Msa0081300-mRNA-1
chr1_2 exon 59795199 59795679 59795199 ID=Msa0081300-mRNA-1:exon:19429;Parent=Msa0081300-mRNA-1
chr1_2 five_prime_UTR 59792469 59792627 59792469 ID=Msa0081300-mRNA-1:five_prime_utr;Parent=Msa0081300-mRNA-1
chr1_2 CDS 59792628 59792696 59792628 ID=Msa0081300-mRNA-1:cds;Parent=Msa0081300-mRNA-1
chr1_2 CDS 59793146 59793301 59793146 ID=Msa0081300-mRNA-1:cds;Parent=Msa0081300-mRNA-1
chr1_2 CDS 59793423 59793564 59793423 ID=Msa0081300-mRNA-1:cds;Parent=Msa0081300-mRNA-1
chr1_2 CDS 59793677 59793765 59793677 ID=Msa0081300-mRNA-1:cds;Parent=Msa0081300-mRNA-1
chr1_2 CDS 59793870 59793924 59793870 ID=Msa0081300-mRNA-1:cds;Parent=Msa0081300-mRNA-1
chr1_2 CDS 59794108 59794193 59794108 ID=Msa0081300-mRNA-1:cds;Parent=Msa0081300-mRNA-1
chr1_2 CDS 59795199 59795357 59795199 ID=Msa0081300-mRNA-1:cds;Parent=Msa0081300-mRNA-1
chr1_2 three_prime_UTR 59795358 59795679 59795358 ID=Msa0081300-mRNA-1:three_prime_utr;Parent=Msa0081300-mRNA-1
Gene Sequence

>Msa0081300

ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGAGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCGGCTAGGCTTTCGGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTAGTGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>Msa0081300

MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSVSQQSKAKSITSRRITCTSSASAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*