AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0511010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511010 MtrunA17_Chr3g0117331 98.795 332 4 0 1 332 1 332 0.0 684
Msa0511010 MtrunA17_Chr4g0058851 58.997 339 131 2 1 332 1 338 7.87e-140 399
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0511010 AT5G63050.1 43.478 345 182 3 1 332 1 345 1.03e-94 285
Msa0511010 AT5G63050.2 43.323 337 178 3 9 332 3 339 6.03e-92 278

Find 136 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTCAATTCCTCTTAT+TGG 0.103995 3_4:+60321544 Msa0511010:five_prime_UTR
TAAAGCAAAATATTTGTTTA+AGG 0.141032 3_4:+60322212 Msa0511010:CDS
CAAAGGAACTAACTCCATTA+TGG 0.172017 3_4:+60323821 Msa0511010:CDS
TGAGTCATTTGTAGAGTTTC+AGG 0.172652 3_4:-60323271 None:intergenic
TTCATGAACAAACCTCTTTC+TGG 0.175817 3_4:+60324564 Msa0511010:three_prime_UTR
AAGATTTAATGTATTCTTAA+AGG 0.192237 3_4:+60324187 Msa0511010:exon
TTAAAGGCGGTTTAATAAAA+TGG 0.199655 3_4:+60321869 Msa0511010:exon
CGGCATCCAGGGACAGAAAA+TGG 0.202023 3_4:-60323333 None:intergenic
AGTACCTTCTTGGTGCATTT+TGG 0.204122 3_4:+60323945 Msa0511010:CDS
TCCTGTTGATTTAGTGGATT+TGG 0.230874 3_4:+60321839 Msa0511010:five_prime_UTR
AAAACCCCAGCACCATAAAA+TGG 0.234882 3_4:-60324292 None:intergenic
TGGATTTGGATAAAGTTTAA+AGG 0.267253 3_4:+60321853 Msa0511010:five_prime_UTR
ACGTACTCTTCTGCTGATTA+TGG 0.297846 3_4:-60324724 None:intergenic
ATATAAATTCAACATGAATT+AGG 0.299154 3_4:-60324346 None:intergenic
ATTCAGGAAGCAGGGCTAAT+TGG 0.312850 3_4:+60323038 Msa0511010:CDS
ACAAGGTTCTATATGAGATT+TGG 0.314845 3_4:+60324422 Msa0511010:three_prime_UTR
TACTTAGGAAAGTACCTTCT+TGG 0.316335 3_4:+60323935 Msa0511010:CDS
AAAGGAACTAACTCCATTAT+GGG 0.335355 3_4:+60323822 Msa0511010:CDS
CTGATTGCCCGACAATAATA+TGG 0.338312 3_4:-60324138 None:intergenic
AGTATTGCAGGAATGGTTAA+TGG 0.345772 3_4:+60324083 Msa0511010:CDS
GTAGTCTTCAGAAAAGTTAA+AGG 0.346826 3_4:+60324209 Msa0511010:three_prime_UTR
AGTAGGTCCTGTTGATTTAG+TGG 0.352698 3_4:+60321833 Msa0511010:intron
ATTTATATTGTTCTTAGATT+AGG 0.354240 3_4:+60324361 Msa0511010:three_prime_UTR
AAGGATATTGAAAGTATTGC+AGG 0.361213 3_4:+60324071 Msa0511010:CDS
TTGATTATGTGGAATCAATA+TGG 0.372639 3_4:+60324115 Msa0511010:CDS
TTGACAAAACATCATATGAT+TGG 0.390341 3_4:+60322166 Msa0511010:CDS
TATGTTATGTTAGGGTTCTT+CGG 0.393889 3_4:+60321433 Msa0511010:five_prime_UTR
AATCCTCAAAGGTTTGATCT+TGG 0.413593 3_4:-60322984 None:intergenic
AGAACTCAAAATGATAATTC+AGG 0.416403 3_4:+60323022 Msa0511010:CDS
TAGTCTTCAGAAAAGTTAAA+GGG 0.419799 3_4:+60324210 Msa0511010:three_prime_UTR
ATCTATCATGTTGTTTAACC+TGG 0.421047 3_4:+60324533 Msa0511010:three_prime_UTR
CTGGCTGTTAATGTAAAATA+TGG 0.423757 3_4:+60323787 Msa0511010:CDS
CTGCAGTGTTCCTCTGTACC+TGG 0.423978 3_4:+60323768 Msa0511010:intron
ATAATGATGAATGCCAAGTA+TGG 0.424082 3_4:-60321500 None:intergenic
ATGTGTAAAGCCACAATTAG+TGG 0.427250 3_4:-60323853 None:intergenic
GTAAATATACCTGTGGTTGA+TGG 0.427818 3_4:-60321902 None:intergenic
TTAAAGTTTGTTGTGTATCA+TGG 0.431223 3_4:+60324887 Msa0511010:three_prime_UTR
GATGATAGACAGAAGCGATA+TGG 0.432356 3_4:-60321383 None:intergenic
CTTTCTGGTTGAGGTGCGAA+TGG 0.433073 3_4:+60324579 Msa0511010:three_prime_UTR
TCCAAATCCACTAAATCAAC+AGG 0.436298 3_4:-60321840 None:intergenic
AAAATGATAATTCAGGAAGC+AGG 0.451996 3_4:+60323029 Msa0511010:CDS
AACAAACCTCTTTCTGGTTG+AGG 0.453914 3_4:+60324570 Msa0511010:three_prime_UTR
AGAGTTTCAGGTAAAATTGT+GGG 0.465553 3_4:-60323259 None:intergenic
GGCATTTGTCATGGAGCAAA+AGG 0.469933 3_4:+60322125 Msa0511010:CDS
GTATCGTTATTGCGGCATCC+AGG 0.470073 3_4:-60323345 None:intergenic
AATCTACAATTTCCTTCCCC+GGG 0.475388 3_4:-60324790 None:intergenic
CAATCTACAATTTCCTTCCC+CGG 0.478206 3_4:-60324791 None:intergenic
AGGTTAAACAACATGATAGA+TGG 0.479439 3_4:-60324531 None:intergenic
AAACCCCAGCACCATAAAAT+GGG 0.489534 3_4:-60324291 None:intergenic
GGACAAGTATCTTGATTATG+TGG 0.490040 3_4:+60324104 Msa0511010:CDS
CAATATGGCCATATTATTGT+CGG 0.490731 3_4:+60324130 Msa0511010:CDS
TAGAGTTTCAGGTAAAATTG+TGG 0.493784 3_4:-60323260 None:intergenic
TTCTCGTATGCATCTGAAGC+AGG 0.495588 3_4:+60323121 Msa0511010:CDS
TCTACAAATGACTCATAGTA+AGG 0.497248 3_4:+60323279 Msa0511010:CDS
GTGAAACCGTGTCCAATAAG+AGG 0.498058 3_4:-60321556 None:intergenic
CTAACATAACATAAATGAAA+AGG 0.498116 3_4:-60321423 None:intergenic
AGCAGGACAGTGGGAGAGGT+GGG 0.498367 3_4:-60324493 None:intergenic
GGCATCCAGGGACAGAAAAT+GGG 0.498531 3_4:-60323332 None:intergenic
TTCGCACCTCAACCAGAAAG+AGG 0.501967 3_4:-60324576 None:intergenic
GGTACAAAATTTGTGTAAGC+AGG 0.502492 3_4:-60324510 None:intergenic
TTTCTGGTTGAGGTGCGAAT+GGG 0.505383 3_4:+60324580 Msa0511010:three_prime_UTR
CTTTGTCGTCTAATTATCCC+CGG 0.508426 3_4:+60324772 Msa0511010:three_prime_UTR
TATTGAAAGTATTGCAGGAA+TGG 0.510575 3_4:+60324076 Msa0511010:CDS
ATGGCTCCACGCAAAGTTTG+AGG 0.512943 3_4:-60324955 None:intergenic
CAAATGACTCATAGTAAGGA+TGG 0.513548 3_4:+60323283 Msa0511010:CDS
GAATGGCTGCTTATGTTACA+AGG 0.515412 3_4:+60324405 Msa0511010:three_prime_UTR
AATATGGCCATATTATTGTC+GGG 0.515586 3_4:+60324131 Msa0511010:CDS
TAAATATACCTGTGGTTGAT+GGG 0.521899 3_4:-60321901 None:intergenic
TTGAGGATTTCATGCTTCAA+AGG 0.523800 3_4:+60322998 Msa0511010:CDS
TGAGCAAGCTAATGATAATG+AGG 0.525092 3_4:+60324314 Msa0511010:three_prime_UTR
TATCCAAGATCAAACCTTTG+AGG 0.525924 3_4:+60322981 Msa0511010:CDS
CCAGCACCATAAAATGGGAT+TGG 0.525969 3_4:-60324286 None:intergenic
CTTCCACACGGCATTTGTCA+TGG 0.526348 3_4:+60322116 Msa0511010:CDS
GCTTCAGATGCATACGAGAA+TGG 0.526668 3_4:-60323118 None:intergenic
GAGGAGATGATGCAAGTGCC+AGG 0.526955 3_4:+60321353 Msa0511010:five_prime_UTR
GGTAAAATTGTGGGAGTCGT+CGG 0.527764 3_4:-60323250 None:intergenic
CTGTTGGACTAGAGGAGAGT+GGG 0.530623 3_4:+60323080 Msa0511010:CDS
GAAGCAGGGCTAATTGGTTG+AGG 0.530888 3_4:+60323044 Msa0511010:CDS
TACGTTGATTTGCATGGCGA+TGG 0.536563 3_4:+60324742 Msa0511010:three_prime_UTR
AAATTGTAGATTGATTCAAA+TGG 0.541553 3_4:+60324801 Msa0511010:three_prime_UTR
TGTAAGCAGGACAGTGGGAG+AGG 0.541874 3_4:-60324497 None:intergenic
AGGGCACCTAAAACCTCTGT+TGG 0.544521 3_4:+60323064 Msa0511010:CDS
ATCGGACTGTCGAAATACTT+AGG 0.549044 3_4:+60323920 Msa0511010:CDS
AGTTTGTTGTGTATCATGGA+AGG 0.549128 3_4:+60324891 Msa0511010:three_prime_UTR
GAAGAGTACGTTGATTTGCA+TGG 0.549942 3_4:+60324736 Msa0511010:three_prime_UTR
AAGCAGGGCTAATTGGTTGA+GGG 0.550081 3_4:+60323045 Msa0511010:CDS
TCTATGCCTCAAGCTTCAAT+CGG 0.551892 3_4:+60323902 Msa0511010:CDS
TGATGAATGCCAAGTATGGA+AGG 0.552942 3_4:-60321496 None:intergenic
TCATCTTTGATCTGTTGCAA+TGG 0.553078 3_4:-60324635 None:intergenic
TTTGTCGTCTAATTATCCCC+GGG 0.554424 3_4:+60324773 Msa0511010:three_prime_UTR
AAGCAGGACAGTGGGAGAGG+TGG 0.556583 3_4:-60324494 None:intergenic
ATATGGTGCTGAAGTTTCAA+AGG 0.559682 3_4:+60323804 Msa0511010:CDS
GGTTGAGGTGCGAATGGGCA+AGG 0.563835 3_4:+60324585 Msa0511010:three_prime_UTR
TATCGTTATTGCGGCATCCA+GGG 0.564738 3_4:-60323344 None:intergenic
CTGTGTAGTTGTGGCTTGTG+AGG 0.565226 3_4:+60324924 Msa0511010:three_prime_UTR
GTTCGTAATCTGTGTAGTTG+TGG 0.565736 3_4:+60324915 Msa0511010:three_prime_UTR
TAAAACCTCTGTTGGACTAG+AGG 0.567446 3_4:+60323072 Msa0511010:CDS
TCTATCATGTTGTTTAACCT+GGG 0.571852 3_4:+60324534 Msa0511010:three_prime_UTR
TTGAAGCATGAAATCCTCAA+AGG 0.573371 3_4:-60322995 None:intergenic
GCAGGACAGTGGGAGAGGTG+GGG 0.574545 3_4:-60324492 None:intergenic
ATCATCATGTCAAGAAGTAG+AGG 0.576608 3_4:+60323213 Msa0511010:CDS
AAATGATAATTCAGGAAGCA+GGG 0.576629 3_4:+60323030 Msa0511010:CDS
CGTCTAATTATCCCCGGGGA+AGG 0.583320 3_4:+60324778 Msa0511010:three_prime_UTR
ATACGAGAATGGCACGTTGT+GGG 0.587563 3_4:-60323107 None:intergenic
CAACAAAGGTATCGTTATTG+CGG 0.587856 3_4:-60323353 None:intergenic
TTACACATCATTATAATCCG+TGG 0.595663 3_4:+60323868 Msa0511010:CDS
ATTATATACAGCTAACAAGA+AGG 0.596078 3_4:+60324052 Msa0511010:CDS
TGGGATTGGCCAGATCTCGT+TGG 0.602616 3_4:-60324272 None:intergenic
GTGAATGAGCAGTTGCAGAA+TGG 0.602991 3_4:-60324447 None:intergenic
TTTGCCAAAATGCACCAAGA+AGG 0.609660 3_4:-60323949 None:intergenic
GTCTTCAGAAAAGTTAAAGG+GGG 0.612613 3_4:+60324212 Msa0511010:three_prime_UTR
ATCTTGGATACACAAAAGCA+AGG 0.615832 3_4:-60322968 None:intergenic
TCAATTCCTCTTATTGGACA+CGG 0.616417 3_4:+60321550 Msa0511010:five_prime_UTR
TGTAGTTGTGGCTTGTGAGG+TGG 0.623820 3_4:+60324927 Msa0511010:three_prime_UTR
ATTTGTGTAAGCAGGACAGT+GGG 0.625370 3_4:-60324502 None:intergenic
TCTGTTGGACTAGAGGAGAG+TGG 0.626726 3_4:+60323079 Msa0511010:CDS
AAGCGATATGGTAAGACACC+TGG 0.629203 3_4:-60321371 None:intergenic
ATTTGGATAAAGTTTAAAGG+CGG 0.631633 3_4:+60321856 Msa0511010:five_prime_UTR
AGTCTTCAGAAAAGTTAAAG+GGG 0.633752 3_4:+60324211 Msa0511010:three_prime_UTR
GAAAAGCAGATGATGTTGCA+AGG 0.634556 3_4:-60323150 None:intergenic
GACAGTCCGATTGAAGCTTG+AGG 0.637429 3_4:-60323908 None:intergenic
ACATTAACAGCCAGGTACAG+AGG 0.638292 3_4:-60323778 None:intergenic
CATACTTACAATATCAACAA+AGG 0.639148 3_4:-60323367 None:intergenic
CATACGAGAATGGCACGTTG+TGG 0.639241 3_4:-60323108 None:intergenic
CATAGAGTGCACACAGACCA+CGG 0.640979 3_4:-60323885 None:intergenic
TCATAGTAAGGATGGAAGTG+AGG 0.641660 3_4:+60323291 Msa0511010:CDS
AAATTGCAGTCTATCTTCTG+CGG 0.658647 3_4:+60324004 Msa0511010:CDS
ATATGATTGGAAGAACAGAC+TGG 0.659799 3_4:+60322179 Msa0511010:CDS
AATTTGTGTAAGCAGGACAG+TGG 0.660849 3_4:-60324503 None:intergenic
TGTATGTGACATCTTCCACA+CGG 0.698973 3_4:+60322104 Msa0511010:CDS
ATCTACAATTTCCTTCCCCG+GGG 0.702008 3_4:-60324789 None:intergenic
TTGTCGTCTAATTATCCCCG+GGG 0.702945 3_4:+60324774 Msa0511010:three_prime_UTR
TGTTGGACTAGAGGAGAGTG+GGG 0.705793 3_4:+60323081 Msa0511010:CDS
ACTCTCCTCTAGTCCAACAG+AGG 0.711106 3_4:-60323077 None:intergenic
GCTCCATGACAAATGCCGTG+TGG 0.755694 3_4:-60322119 None:intergenic
TTGGATACACAAAAGCAAGG+AGG 0.762948 3_4:-60322965 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTTTTTCGATATTT+TGG + chr3_4:60323557-60323576 Msa0511010:intron 10.0%
!! ATATTTACAAAAATTGAAAT+TGG + chr3_4:60324863-60324882 Msa0511010:three_prime_UTR 10.0%
!!! TTTTCATTTATGTTATGTTA+GGG + chr3_4:60321425-60321444 Msa0511010:five_prime_UTR 15.0%
!! AATGAAAATGAAAATTGAAA+AGG - chr3_4:60321600-60321619 None:intergenic 15.0%
!! ATAAGAATAAACAATAAAAG+GGG - chr3_4:60321693-60321712 None:intergenic 15.0%
!! GATAAGAATAAACAATAAAA+GGG - chr3_4:60321694-60321713 None:intergenic 15.0%
!! AGATAAGAATAAACAATAAA+AGG - chr3_4:60321695-60321714 None:intergenic 15.0%
!!! AACAAATATTTTGCTTTAAT+AGG - chr3_4:60322210-60322229 None:intergenic 15.0%
!! TAAAGCAAAATATTTGTTTA+AGG + chr3_4:60322212-60322231 Msa0511010:CDS 15.0%
!! TCAAACGTATTATATATATA+GGG - chr3_4:60322616-60322635 None:intergenic 15.0%
!! TTCAAACGTATTATATATAT+AGG - chr3_4:60322617-60322636 None:intergenic 15.0%
!! ATTTAAGGAAAATAAAATGA+AGG + chr3_4:60323602-60323621 Msa0511010:intron 15.0%
!! TTTAAGGAAAATAAAATGAA+GGG + chr3_4:60323603-60323622 Msa0511010:intron 15.0%
!! AAGATTTAATGTATTCTTAA+AGG + chr3_4:60324187-60324206 Msa0511010:exon 15.0%
!! ATATAAATTCAACATGAATT+AGG - chr3_4:60324349-60324368 None:intergenic 15.0%
!! ATTTATATTGTTCTTAGATT+AGG + chr3_4:60324361-60324380 Msa0511010:three_prime_UTR 15.0%
!! TTAATTAGTCGAAAAATAGT+AGG + chr3_4:60321331-60321350 Msa0511010:five_prime_UTR 20.0%
!! CTAACATAACATAAATGAAA+AGG - chr3_4:60321426-60321445 None:intergenic 20.0%
!!! CTTTTCATTTATGTTATGTT+AGG + chr3_4:60321424-60321443 Msa0511010:five_prime_UTR 20.0%
!! TAAGAATAAACAATAAAAGG+GGG - chr3_4:60321692-60321711 None:intergenic 20.0%
!!! TTAATTCATTTTCTGTAAGT+CGG + chr3_4:60321719-60321738 Msa0511010:intron 20.0%
!! AAATTTAATAATCGTTGAAG+AGG - chr3_4:60321927-60321946 None:intergenic 20.0%
!! ACATAAAACTTTATAGCAAT+GGG - chr3_4:60321970-60321989 None:intergenic 20.0%
!! TACATAAAACTTTATAGCAA+TGG - chr3_4:60321971-60321990 None:intergenic 20.0%
!! TTCTAATATTGATGTTAAGT+AGG - chr3_4:60322317-60322336 None:intergenic 20.0%
!! TTTATAAGAAGACAAATACA+AGG - chr3_4:60322917-60322936 None:intergenic 20.0%
!! TTGTATTTGTCTTCTTATAA+AGG + chr3_4:60322916-60322935 Msa0511010:intron 20.0%
!! TGTATTTGTCTTCTTATAAA+GGG + chr3_4:60322917-60322936 Msa0511010:intron 20.0%
!! TTAAGGAAAATAAAATGAAG+GGG + chr3_4:60323604-60323623 Msa0511010:intron 20.0%
!!! AGTTACATAATATATTGACT+AGG - chr3_4:60323650-60323669 None:intergenic 20.0%
!!! AATTGATTTTTGTCATTGAA+TGG + chr3_4:60324388-60324407 Msa0511010:three_prime_UTR 20.0%
!!! AAATTGTAGATTGATTCAAA+TGG + chr3_4:60324801-60324820 Msa0511010:three_prime_UTR 20.0%
!! AAAAAGGAAAGGATTTTGAA+AGG - chr3_4:60321470-60321489 None:intergenic 25.0%
! TGGATTTGGATAAAGTTTAA+AGG + chr3_4:60321853-60321872 Msa0511010:five_prime_UTR 25.0%
! ATTTGGATAAAGTTTAAAGG+CGG + chr3_4:60321856-60321875 Msa0511010:five_prime_UTR 25.0%
! TTAAAGGCGGTTTAATAAAA+TGG + chr3_4:60321869-60321888 Msa0511010:exon 25.0%
! TTGACAAAACATCATATGAT+TGG + chr3_4:60322166-60322185 Msa0511010:CDS 25.0%
! ATAGTCAAAGTACAATTCTA+AGG + chr3_4:60322386-60322405 Msa0511010:intron 25.0%
! TAATCGTTTATCTTAGTTCA+TGG - chr3_4:60322417-60322436 None:intergenic 25.0%
! CATTCATTAACATTCCTTAT+CGG - chr3_4:60322445-60322464 None:intergenic 25.0%
! AGGAATGTTAATGAATGAAT+TGG + chr3_4:60322448-60322467 Msa0511010:intron 25.0%
! GGAATGTTAATGAATGAATT+GGG + chr3_4:60322449-60322468 Msa0511010:intron 25.0%
! TTATTTATTGTTTCCAGTGT+AGG + chr3_4:60322941-60322960 Msa0511010:intron 25.0%
! TATTTATTGTTTCCAGTGTA+GGG + chr3_4:60322942-60322961 Msa0511010:intron 25.0%
! AGAACTCAAAATGATAATTC+AGG + chr3_4:60323022-60323041 Msa0511010:CDS 25.0%
! CATACTTACAATATCAACAA+AGG - chr3_4:60323370-60323389 None:intergenic 25.0%
! TGTTGTGATATATTTGTGAA+AGG + chr3_4:60323407-60323426 Msa0511010:intron 25.0%
! GTTGTGATATATTTGTGAAA+GGG + chr3_4:60323408-60323427 Msa0511010:intron 25.0%
! TGAACAACAAAACATGTATA+TGG - chr3_4:60323460-60323479 None:intergenic 25.0%
!!! AAACTTTAGGTTGGAATTTA+AGG + chr3_4:60323587-60323606 Msa0511010:intron 25.0%
! TAAGGAAAATAAAATGAAGG+GGG + chr3_4:60323605-60323624 Msa0511010:intron 25.0%
! TATTGTGCAATCAATGTATT+TGG - chr3_4:60323717-60323736 None:intergenic 25.0%
! ATTATATACAGCTAACAAGA+AGG + chr3_4:60324052-60324071 Msa0511010:CDS 25.0%
! TTGATTATGTGGAATCAATA+TGG + chr3_4:60324115-60324134 Msa0511010:CDS 25.0%
! TAGTCTTCAGAAAAGTTAAA+GGG + chr3_4:60324210-60324229 Msa0511010:three_prime_UTR 25.0%
!!! TTAAAGTTTGTTGTGTATCA+TGG + chr3_4:60324887-60324906 Msa0511010:three_prime_UTR 25.0%
ATTAGTCGAAAAATAGTAGG+AGG + chr3_4:60321334-60321353 Msa0511010:five_prime_UTR 30.0%
TATGTTATGTTAGGGTTCTT+CGG + chr3_4:60321433-60321452 Msa0511010:five_prime_UTR 30.0%
GAAGGAAGAAAAAAAAGGAA+AGG - chr3_4:60321481-60321500 None:intergenic 30.0%
GTATGGAAGGAAGAAAAAAA+AGG - chr3_4:60321486-60321505 None:intergenic 30.0%
!!! TTTTTTCTTCCTTCCATACT+TGG + chr3_4:60321487-60321506 Msa0511010:five_prime_UTR 30.0%
ATAATGATGAATGCCAAGTA+TGG - chr3_4:60321503-60321522 None:intergenic 30.0%
TCAACTTCAATTCCTCTTAT+TGG + chr3_4:60321544-60321563 Msa0511010:five_prime_UTR 30.0%
AGCTAGAAAAATAGCACAAA+TGG - chr3_4:60321761-60321780 None:intergenic 30.0%
!! ATTGTTACTGATTTCTGAGT+AGG + chr3_4:60321816-60321835 Msa0511010:intron 30.0%
TAAATATACCTGTGGTTGAT+GGG - chr3_4:60321904-60321923 None:intergenic 30.0%
!! ATGTTCATATTTCTAGTGCT+TGG + chr3_4:60322019-60322038 Msa0511010:intron 30.0%
ACAAATCATCTATGAAGTTG+TGG - chr3_4:60322066-60322085 None:intergenic 30.0%
! GTGTCTAATTTTTCACGAAA+AGG - chr3_4:60322255-60322274 None:intergenic 30.0%
AAAAATTAGACACTGATGTC+AGG + chr3_4:60322262-60322281 Msa0511010:intron 30.0%
AAAATTAGACACTGATGTCA+GGG + chr3_4:60322263-60322282 Msa0511010:intron 30.0%
ACTCAGTGACTATTATCATT+GGG - chr3_4:60322355-60322374 None:intergenic 30.0%
AACTCAGTGACTATTATCAT+TGG - chr3_4:60322356-60322375 None:intergenic 30.0%
AAACGATTACAATTCCGATA+AGG + chr3_4:60322428-60322447 Msa0511010:intron 30.0%
CATTACCGTTAAATTGAATC+TGG + chr3_4:60322531-60322550 Msa0511010:intron 30.0%
AACCACCAGATTCAATTTAA+CGG - chr3_4:60322539-60322558 None:intergenic 30.0%
TAGTATAGTTCTTGTAGAGT+TGG + chr3_4:60322658-60322677 Msa0511010:intron 30.0%
AGTATAGTTCTTGTAGAGTT+GGG + chr3_4:60322659-60322678 Msa0511010:intron 30.0%
! TATCCGAGGAAAATGAATTT+TGG + chr3_4:60322691-60322710 Msa0511010:intron 30.0%
! ATCCGAGGAAAATGAATTTT+GGG + chr3_4:60322692-60322711 Msa0511010:intron 30.0%
AAAATGATAATTCAGGAAGC+AGG + chr3_4:60323029-60323048 Msa0511010:CDS 30.0%
AAATGATAATTCAGGAAGCA+GGG + chr3_4:60323030-60323049 Msa0511010:CDS 30.0%
TTCATGGACTCTTCAAAAAA+TGG + chr3_4:60323170-60323189 Msa0511010:CDS 30.0%
! CAAGAAGTAGAGGAAATTTT+TGG + chr3_4:60323223-60323242 Msa0511010:CDS 30.0%
! AGAGTTTCAGGTAAAATTGT+GGG - chr3_4:60323262-60323281 None:intergenic 30.0%
! TAGAGTTTCAGGTAAAATTG+TGG - chr3_4:60323263-60323282 None:intergenic 30.0%
TCTACAAATGACTCATAGTA+AGG + chr3_4:60323279-60323298 Msa0511010:CDS 30.0%
!! TTTTGGTTGTAGCAAACTTT+AGG + chr3_4:60323574-60323593 Msa0511010:intron 30.0%
AAGGAAAATAAAATGAAGGG+GGG + chr3_4:60323606-60323625 Msa0511010:intron 30.0%
TGCAGATGGAAGATAAAATT+AGG - chr3_4:60323753-60323772 None:intergenic 30.0%
! CATATTTTACATTAACAGCC+AGG - chr3_4:60323789-60323808 None:intergenic 30.0%
CTGGCTGTTAATGTAAAATA+TGG + chr3_4:60323787-60323806 Msa0511010:CDS 30.0%
AAAGGAACTAACTCCATTAT+GGG + chr3_4:60323822-60323841 Msa0511010:CDS 30.0%
! TAACTCCATTATGGGTTTTT+GGG + chr3_4:60323830-60323849 Msa0511010:CDS 30.0%
TTACACATCATTATAATCCG+TGG + chr3_4:60323868-60323887 Msa0511010:CDS 30.0%
! TTGGCAAACTACTACATTTT+TGG + chr3_4:60323964-60323983 Msa0511010:CDS 30.0%
!! ATGTGTTTTAAGCTCGATAT+AGG - chr3_4:60324030-60324049 None:intergenic 30.0%
!! AAGGATATTGAAAGTATTGC+AGG + chr3_4:60324071-60324090 Msa0511010:CDS 30.0%
!! TATTGAAAGTATTGCAGGAA+TGG + chr3_4:60324076-60324095 Msa0511010:CDS 30.0%
CAATATGGCCATATTATTGT+CGG + chr3_4:60324130-60324149 Msa0511010:CDS 30.0%
AATATGGCCATATTATTGTC+GGG + chr3_4:60324131-60324150 Msa0511010:CDS 30.0%
GTAGTCTTCAGAAAAGTTAA+AGG + chr3_4:60324209-60324228 Msa0511010:three_prime_UTR 30.0%
AGTCTTCAGAAAAGTTAAAG+GGG + chr3_4:60324211-60324230 Msa0511010:three_prime_UTR 30.0%
ACAAGGTTCTATATGAGATT+TGG + chr3_4:60324422-60324441 Msa0511010:three_prime_UTR 30.0%
AGGTTAAACAACATGATAGA+TGG - chr3_4:60324534-60324553 None:intergenic 30.0%
! ATCTATCATGTTGTTTAACC+TGG + chr3_4:60324533-60324552 Msa0511010:three_prime_UTR 30.0%
! TCTATCATGTTGTTTAACCT+GGG + chr3_4:60324534-60324553 Msa0511010:three_prime_UTR 30.0%
! ACTGAATGTTTTGTATGTTG+TGG + chr3_4:60324664-60324683 Msa0511010:three_prime_UTR 30.0%
! CTGAATGTTTTGTATGTTGT+GGG + chr3_4:60324665-60324684 Msa0511010:three_prime_UTR 30.0%
! TGAATGTTTTGTATGTTGTG+GGG + chr3_4:60324666-60324685 Msa0511010:three_prime_UTR 30.0%
TCAATTCCTCTTATTGGACA+CGG + chr3_4:60321550-60321569 Msa0511010:five_prime_UTR 35.0%
AAGGAAAAGAGAGAATTACG+CGG - chr3_4:60321581-60321600 None:intergenic 35.0%
!! TCCTGTTGATTTAGTGGATT+TGG + chr3_4:60321839-60321858 Msa0511010:five_prime_UTR 35.0%
TCCAAATCCACTAAATCAAC+AGG - chr3_4:60321843-60321862 None:intergenic 35.0%
GTAAATATACCTGTGGTTGA+TGG - chr3_4:60321905-60321924 None:intergenic 35.0%
TGAAGAGGTAAATATACCTG+TGG - chr3_4:60321912-60321931 None:intergenic 35.0%
!! CATATTTCTAGTGCTTGGTT+CGG + chr3_4:60322024-60322043 Msa0511010:intron 35.0%
ATATGATTGGAAGAACAGAC+TGG + chr3_4:60322179-60322198 Msa0511010:CDS 35.0%
ATGAATGAATTGGGAAAGTG+AGG + chr3_4:60322458-60322477 Msa0511010:intron 35.0%
TGAATGAATTGGGAAAGTGA+GGG + chr3_4:60322459-60322478 Msa0511010:intron 35.0%
TACCGTTAAATTGAATCTGG+TGG + chr3_4:60322534-60322553 Msa0511010:intron 35.0%
CAATAGATAAGAGTTCTCAC+TGG + chr3_4:60322583-60322602 Msa0511010:intron 35.0%
GTATAGTTCTTGTAGAGTTG+GGG + chr3_4:60322660-60322679 Msa0511010:intron 35.0%
! TCCGAGGAAAATGAATTTTG+GGG + chr3_4:60322693-60322712 Msa0511010:intron 35.0%
! TCCCCAAAATTCATTTTCCT+CGG - chr3_4:60322697-60322716 None:intergenic 35.0%
ATCTTGGATACACAAAAGCA+AGG - chr3_4:60322971-60322990 None:intergenic 35.0%
TATCCAAGATCAAACCTTTG+AGG + chr3_4:60322981-60323000 Msa0511010:CDS 35.0%
AATCCTCAAAGGTTTGATCT+TGG - chr3_4:60322987-60323006 None:intergenic 35.0%
TTGAAGCATGAAATCCTCAA+AGG - chr3_4:60322998-60323017 None:intergenic 35.0%
TTGAGGATTTCATGCTTCAA+AGG + chr3_4:60322998-60323017 Msa0511010:CDS 35.0%
ATCATCATGTCAAGAAGTAG+AGG + chr3_4:60323213-60323232 Msa0511010:CDS 35.0%
TGAGTCATTTGTAGAGTTTC+AGG - chr3_4:60323274-60323293 None:intergenic 35.0%
CAAATGACTCATAGTAAGGA+TGG + chr3_4:60323283-60323302 Msa0511010:CDS 35.0%
!! CAACAAAGGTATCGTTATTG+CGG - chr3_4:60323356-60323375 None:intergenic 35.0%
ATATATCACAACATGCAGAG+AGG - chr3_4:60323400-60323419 None:intergenic 35.0%
GTATATGGTACCCCAAAAAA+AGG - chr3_4:60323445-60323464 None:intergenic 35.0%
AAAATAAAATGAAGGGGGGT+GGG + chr3_4:60323610-60323629 Msa0511010:intron 35.0%
! ATATGGTGCTGAAGTTTCAA+AGG + chr3_4:60323804-60323823 Msa0511010:CDS 35.0%
CAAAGGAACTAACTCCATTA+TGG + chr3_4:60323821-60323840 Msa0511010:CDS 35.0%
! CTAACTCCATTATGGGTTTT+TGG + chr3_4:60323829-60323848 Msa0511010:CDS 35.0%
ATGTGTAAAGCCACAATTAG+TGG - chr3_4:60323856-60323875 None:intergenic 35.0%
!! TACTTAGGAAAGTACCTTCT+TGG + chr3_4:60323935-60323954 Msa0511010:CDS 35.0%
!! GCAAACTACTACATTTTTGG+CGG + chr3_4:60323967-60323986 Msa0511010:CDS 35.0%
AAATTGCAGTCTATCTTCTG+CGG + chr3_4:60324004-60324023 Msa0511010:CDS 35.0%
AGTATTGCAGGAATGGTTAA+TGG + chr3_4:60324083-60324102 Msa0511010:CDS 35.0%
GGACAAGTATCTTGATTATG+TGG + chr3_4:60324104-60324123 Msa0511010:CDS 35.0%
GTCTTCAGAAAAGTTAAAGG+GGG + chr3_4:60324212-60324231 Msa0511010:three_prime_UTR 35.0%
AAAGTTAAAGGGGGTTTGAT+TGG + chr3_4:60324221-60324240 Msa0511010:three_prime_UTR 35.0%
! AGAAATTTTCCAACGAGATC+TGG + chr3_4:60324263-60324282 Msa0511010:three_prime_UTR 35.0%
! TGAGCAAGCTAATGATAATG+AGG + chr3_4:60324314-60324333 Msa0511010:three_prime_UTR 35.0%
GGTACAAAATTTGTGTAAGC+AGG - chr3_4:60324513-60324532 None:intergenic 35.0%
! TGTTCATGAATACTTTTCCC+AGG - chr3_4:60324554-60324573 None:intergenic 35.0%
TTCATGAACAAACCTCTTTC+TGG + chr3_4:60324564-60324583 Msa0511010:three_prime_UTR 35.0%
TCATCTTTGATCTGTTGCAA+TGG - chr3_4:60324638-60324657 None:intergenic 35.0%
!! AGTTTGTTGTGTATCATGGA+AGG + chr3_4:60324891-60324910 Msa0511010:three_prime_UTR 35.0%
GATGATAGACAGAAGCGATA+TGG - chr3_4:60321386-60321405 None:intergenic 40.0%
TGATGAATGCCAAGTATGGA+AGG - chr3_4:60321499-60321518 None:intergenic 40.0%
!! AGTAGGTCCTGTTGATTTAG+TGG + chr3_4:60321833-60321852 Msa0511010:intron 40.0%
!!! TGATTTGTTTTCCTGTCGTC+AGG + chr3_4:60322078-60322097 Msa0511010:intron 40.0%
!! GATTTGTTTTCCTGTCGTCA+GGG + chr3_4:60322079-60322098 Msa0511010:intron 40.0%
TGTATGTGACATCTTCCACA+CGG + chr3_4:60322104-60322123 Msa0511010:CDS 40.0%
ATTTCTTCAGTTCCATTCCC+TGG + chr3_4:60322846-60322865 Msa0511010:intron 40.0%
TGCATTAGCAACAATCACCA+GGG - chr3_4:60322866-60322885 None:intergenic 40.0%
TTGGATACACAAAAGCAAGG+AGG - chr3_4:60322968-60322987 None:intergenic 40.0%
! TCTAGTCCAACAGAGGTTTT+AGG - chr3_4:60323073-60323092 None:intergenic 40.0%
! TAAAACCTCTGTTGGACTAG+AGG + chr3_4:60323072-60323091 Msa0511010:CDS 40.0%
GAAAAGCAGATGATGTTGCA+AGG - chr3_4:60323153-60323172 None:intergenic 40.0%
!! GCAACATCATCTGCTTTTCA+TGG + chr3_4:60323154-60323173 Msa0511010:CDS 40.0%
TCATAGTAAGGATGGAAGTG+AGG + chr3_4:60323291-60323310 Msa0511010:CDS 40.0%
!!! AGATGCGTGCACCTTTTTTT+GGG + chr3_4:60323431-60323450 Msa0511010:intron 40.0%
GGTTGTAGCAAACTTTAGGT+TGG + chr3_4:60323578-60323597 Msa0511010:intron 40.0%
GAAAATAAAATGAAGGGGGG+TGG + chr3_4:60323609-60323628 Msa0511010:intron 40.0%
TCTATGCCTCAAGCTTCAAT+CGG + chr3_4:60323902-60323921 Msa0511010:CDS 40.0%
ATCGGACTGTCGAAATACTT+AGG + chr3_4:60323920-60323939 Msa0511010:CDS 40.0%
!! AGTACCTTCTTGGTGCATTT+TGG + chr3_4:60323945-60323964 Msa0511010:CDS 40.0%
TTTGCCAAAATGCACCAAGA+AGG - chr3_4:60323952-60323971 None:intergenic 40.0%
!!! AACTACTACATTTTTGGCGG+CGG + chr3_4:60323970-60323989 Msa0511010:CDS 40.0%
CTGATTGCCCGACAATAATA+TGG - chr3_4:60324141-60324160 None:intergenic 40.0%
! ATCTGGCCAATCCCATTTTA+TGG + chr3_4:60324280-60324299 Msa0511010:three_prime_UTR 40.0%
! CAATCCCATTTTATGGTGCT+GGG + chr3_4:60324287-60324306 Msa0511010:three_prime_UTR 40.0%
!! AATCCCATTTTATGGTGCTG+GGG + chr3_4:60324288-60324307 Msa0511010:three_prime_UTR 40.0%
AAACCCCAGCACCATAAAAT+GGG - chr3_4:60324294-60324313 None:intergenic 40.0%
AAAACCCCAGCACCATAAAA+TGG - chr3_4:60324295-60324314 None:intergenic 40.0%
GAATGGCTGCTTATGTTACA+AGG + chr3_4:60324405-60324424 Msa0511010:three_prime_UTR 40.0%
ATTTGTGTAAGCAGGACAGT+GGG - chr3_4:60324505-60324524 None:intergenic 40.0%
AATTTGTGTAAGCAGGACAG+TGG - chr3_4:60324506-60324525 None:intergenic 40.0%
!! AACAAACCTCTTTCTGGTTG+AGG + chr3_4:60324570-60324589 Msa0511010:three_prime_UTR 40.0%
! ACGTACTCTTCTGCTGATTA+TGG - chr3_4:60324727-60324746 None:intergenic 40.0%
!! GAAGAGTACGTTGATTTGCA+TGG + chr3_4:60324736-60324755 Msa0511010:three_prime_UTR 40.0%
CTTTGTCGTCTAATTATCCC+CGG + chr3_4:60324772-60324791 Msa0511010:three_prime_UTR 40.0%
TTTGTCGTCTAATTATCCCC+GGG + chr3_4:60324773-60324792 Msa0511010:three_prime_UTR 40.0%
AATCTACAATTTCCTTCCCC+GGG - chr3_4:60324793-60324812 None:intergenic 40.0%
CAATCTACAATTTCCTTCCC+CGG - chr3_4:60324794-60324813 None:intergenic 40.0%
GTTCGTAATCTGTGTAGTTG+TGG + chr3_4:60324915-60324934 Msa0511010:three_prime_UTR 40.0%
AAGCGATATGGTAAGACACC+TGG - chr3_4:60321374-60321393 None:intergenic 45.0%
GTGAAACCGTGTCCAATAAG+AGG - chr3_4:60321559-60321578 None:intergenic 45.0%
!! AAAGGGGGCATTTGAGAAAG+TGG - chr3_4:60321677-60321696 None:intergenic 45.0%
! TTTTGTAGCCCATCAACCAC+AGG + chr3_4:60321893-60321912 Msa0511010:CDS 45.0%
GGCATTTGTCATGGAGCAAA+AGG + chr3_4:60322125-60322144 Msa0511010:CDS 45.0%
TTGGGGATTCGTATTATCCG+AGG + chr3_4:60322677-60322696 Msa0511010:intron 45.0%
! CGTCATCAAACATTTGCTGC+AGG - chr3_4:60322751-60322770 None:intergenic 45.0%
TAGCAACAATCACCAGGGAA+TGG - chr3_4:60322861-60322880 None:intergenic 45.0%
CTGCATTAGCAACAATCACC+AGG - chr3_4:60322867-60322886 None:intergenic 45.0%
CTGGTGATTGTTGCTAATGC+AGG + chr3_4:60322865-60322884 Msa0511010:intron 45.0%
ATTCAGGAAGCAGGGCTAAT+TGG + chr3_4:60323038-60323057 Msa0511010:CDS 45.0%
AAGCAGGGCTAATTGGTTGA+GGG + chr3_4:60323045-60323064 Msa0511010:CDS 45.0%
ATACGAGAATGGCACGTTGT+GGG - chr3_4:60323110-60323129 None:intergenic 45.0%
GCTTCAGATGCATACGAGAA+TGG - chr3_4:60323121-60323140 None:intergenic 45.0%
! TTCTCGTATGCATCTGAAGC+AGG + chr3_4:60323121-60323140 Msa0511010:CDS 45.0%
GGTAAAATTGTGGGAGTCGT+CGG - chr3_4:60323253-60323272 None:intergenic 45.0%
!!! TGGAAGTGAGGTTTTGAAGC+TGG + chr3_4:60323303-60323322 Msa0511010:CDS 45.0%
! ATTGTCCCATTTTCTGTCCC+TGG + chr3_4:60323327-60323346 Msa0511010:CDS 45.0%
TATCGTTATTGCGGCATCCA+GGG - chr3_4:60323347-60323366 None:intergenic 45.0%
!!! GAGATGCGTGCACCTTTTTT+TGG + chr3_4:60323430-60323449 Msa0511010:intron 45.0%
!!! GATGCGTGCACCTTTTTTTG+GGG + chr3_4:60323432-60323451 Msa0511010:intron 45.0%
ACATTAACAGCCAGGTACAG+AGG - chr3_4:60323781-60323800 None:intergenic 45.0%
AGTGGCCCAAAAACCCATAA+TGG - chr3_4:60323838-60323857 None:intergenic 45.0%
!! GGTTTTTGGGCCACTAATTG+TGG + chr3_4:60323843-60323862 Msa0511010:CDS 45.0%
!!! ACTACTACATTTTTGGCGGC+GGG + chr3_4:60323971-60323990 Msa0511010:CDS 45.0%
GTTAAAGGGGGTTTGATTGG+AGG + chr3_4:60324224-60324243 Msa0511010:three_prime_UTR 45.0%
CCAGCACCATAAAATGGGAT+TGG - chr3_4:60324289-60324308 None:intergenic 45.0%
! CCAATCCCATTTTATGGTGC+TGG + chr3_4:60324286-60324305 Msa0511010:three_prime_UTR 45.0%
GTGAATGAGCAGTTGCAGAA+TGG - chr3_4:60324450-60324469 None:intergenic 45.0%
!! TTTCTGGTTGAGGTGCGAAT+GGG + chr3_4:60324580-60324599 Msa0511010:three_prime_UTR 45.0%
!! TACGTTGATTTGCATGGCGA+TGG + chr3_4:60324742-60324761 Msa0511010:three_prime_UTR 45.0%
TTGTCGTCTAATTATCCCCG+GGG + chr3_4:60324774-60324793 Msa0511010:three_prime_UTR 45.0%
ATCTACAATTTCCTTCCCCG+GGG - chr3_4:60324792-60324811 None:intergenic 45.0%
CACATACAAACCCTGACGAC+AGG - chr3_4:60322092-60322111 None:intergenic 50.0%
CTTCCACACGGCATTTGTCA+TGG + chr3_4:60322116-60322135 Msa0511010:CDS 50.0%
TTGGGAAAGTGAGGGAACGA+AGG + chr3_4:60322467-60322486 Msa0511010:intron 50.0%
TGGGAAAGTGAGGGAACGAA+GGG + chr3_4:60322468-60322487 Msa0511010:intron 50.0%
GCAGGTAGTGTTCACAAGCA+CGG - chr3_4:60322733-60322752 None:intergenic 50.0%
GAAGCAGGGCTAATTGGTTG+AGG + chr3_4:60323044-60323063 Msa0511010:CDS 50.0%
! AGGGCACCTAAAACCTCTGT+TGG + chr3_4:60323064-60323083 Msa0511010:CDS 50.0%
ACTCTCCTCTAGTCCAACAG+AGG - chr3_4:60323080-60323099 None:intergenic 50.0%
! TCTGTTGGACTAGAGGAGAG+TGG + chr3_4:60323079-60323098 Msa0511010:CDS 50.0%
! CTGTTGGACTAGAGGAGAGT+GGG + chr3_4:60323080-60323099 Msa0511010:CDS 50.0%
! TGTTGGACTAGAGGAGAGTG+GGG + chr3_4:60323081-60323100 Msa0511010:CDS 50.0%
CATACGAGAATGGCACGTTG+TGG - chr3_4:60323111-60323130 None:intergenic 50.0%
GGCATCCAGGGACAGAAAAT+GGG - chr3_4:60323335-60323354 None:intergenic 50.0%
GTATCGTTATTGCGGCATCC+AGG - chr3_4:60323348-60323367 None:intergenic 50.0%
GTACAGAGGAACACTGCAGA+TGG - chr3_4:60323767-60323786 None:intergenic 50.0%
CATAGAGTGCACACAGACCA+CGG - chr3_4:60323888-60323907 None:intergenic 50.0%
GACAGTCCGATTGAAGCTTG+AGG - chr3_4:60323911-60323930 None:intergenic 50.0%
TTCGCACCTCAACCAGAAAG+AGG - chr3_4:60324579-60324598 None:intergenic 50.0%
!! CTTTCTGGTTGAGGTGCGAA+TGG + chr3_4:60324579-60324598 Msa0511010:three_prime_UTR 50.0%
! CTGTGTAGTTGTGGCTTGTG+AGG + chr3_4:60324924-60324943 Msa0511010:three_prime_UTR 50.0%
! TGTAGTTGTGGCTTGTGAGG+TGG + chr3_4:60324927-60324946 Msa0511010:three_prime_UTR 50.0%
GAGGAGATGATGCAAGTGCC+AGG + chr3_4:60321353-60321372 Msa0511010:five_prime_UTR 55.0%
GCTCCATGACAAATGCCGTG+TGG - chr3_4:60322122-60322141 None:intergenic 55.0%
GGGAAAGTGAGGGAACGAAG+GGG + chr3_4:60322469-60322488 Msa0511010:intron 55.0%
GGAAAGTGAGGGAACGAAGG+GGG + chr3_4:60322470-60322489 Msa0511010:intron 55.0%
TGAGGGAACGAAGGGGGTTA+TGG + chr3_4:60322476-60322495 Msa0511010:intron 55.0%
GAGGGAACGAAGGGGGTTAT+GGG + chr3_4:60322477-60322496 Msa0511010:intron 55.0%
AGGGAACGAAGGGGGTTATG+GGG + chr3_4:60322478-60322497 Msa0511010:intron 55.0%
AAAGCAAGGAGGCCCTACAC+TGG - chr3_4:60322957-60322976 None:intergenic 55.0%
CGGCATCCAGGGACAGAAAA+TGG - chr3_4:60323336-60323355 None:intergenic 55.0%
CTGCAGTGTTCCTCTGTACC+TGG + chr3_4:60323768-60323787 Msa0511010:intron 55.0%
!! TGGGATTGGCCAGATCTCGT+TGG - chr3_4:60324275-60324294 None:intergenic 55.0%
TGTAAGCAGGACAGTGGGAG+AGG - chr3_4:60324500-60324519 None:intergenic 55.0%
CGTCTAATTATCCCCGGGGA+AGG + chr3_4:60324778-60324797 Msa0511010:three_prime_UTR 55.0%
GAACGAAGGGGGTTATGGGG+TGG + chr3_4:60322481-60322500 Msa0511010:intron 60.0%
AGCAGGACAGTGGGAGAGGT+GGG - chr3_4:60324496-60324515 None:intergenic 60.0%
AAGCAGGACAGTGGGAGAGG+TGG - chr3_4:60324497-60324516 None:intergenic 60.0%
GGTTGAGGTGCGAATGGGCA+AGG + chr3_4:60324585-60324604 Msa0511010:three_prime_UTR 60.0%
GCAGGACAGTGGGAGAGGTG+GGG - chr3_4:60324495-60324514 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 60321325 60324966 60321325 ID=Msa0511010;Name=Msa0511010
chr3_4 mRNA 60321325 60324966 60321325 ID=Msa0511010-mRNA-1;Parent=Msa0511010;Name=Msa0511010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=321|1|1|1|0.6|0.5|6|778|332
chr3_4 exon 60321325 60321581 60321325 ID=Msa0511010-mRNA-1:exon:14359;Parent=Msa0511010-mRNA-1
chr3_4 exon 60321719 60321732 60321719 ID=Msa0511010-mRNA-1:exon:14360;Parent=Msa0511010-mRNA-1
chr3_4 exon 60321838 60321914 60321838 ID=Msa0511010-mRNA-1:exon:14361;Parent=Msa0511010-mRNA-1
chr3_4 exon 60322100 60322233 60322100 ID=Msa0511010-mRNA-1:exon:14362;Parent=Msa0511010-mRNA-1
chr3_4 exon 60322958 60323380 60322958 ID=Msa0511010-mRNA-1:exon:14363;Parent=Msa0511010-mRNA-1
chr3_4 exon 60323774 60324966 60323774 ID=Msa0511010-mRNA-1:exon:14364;Parent=Msa0511010-mRNA-1
chr3_4 five_prime_UTR 60321325 60321581 60321325 ID=Msa0511010-mRNA-1:five_prime_utr;Parent=Msa0511010-mRNA-1
chr3_4 five_prime_UTR 60321719 60321732 60321719 ID=Msa0511010-mRNA-1:five_prime_utr;Parent=Msa0511010-mRNA-1
chr3_4 five_prime_UTR 60321838 60321887 60321838 ID=Msa0511010-mRNA-1:five_prime_utr;Parent=Msa0511010-mRNA-1
chr3_4 CDS 60321888 60321914 60321888 ID=Msa0511010-mRNA-1:cds;Parent=Msa0511010-mRNA-1
chr3_4 CDS 60322100 60322233 60322100 ID=Msa0511010-mRNA-1:cds;Parent=Msa0511010-mRNA-1
chr3_4 CDS 60322958 60323380 60322958 ID=Msa0511010-mRNA-1:cds;Parent=Msa0511010-mRNA-1
chr3_4 CDS 60323774 60324188 60323774 ID=Msa0511010-mRNA-1:cds;Parent=Msa0511010-mRNA-1
chr3_4 three_prime_UTR 60324189 60324966 60324189 ID=Msa0511010-mRNA-1:three_prime_utr;Parent=Msa0511010-mRNA-1
Gene Sequence

>Msa0511010

ATGGCTTTTGTAGCCCATCAACCACAGGGTTTGTATGTGACATCTTCCACACGGCATTTGTCATGGAGCAAAAGGATGAAATTGAAGCAGTGTTTGACAAAACATCATATGATTGGAAGAACAGACTGGCATCACCTATTAAAGCAAAATATTTGTTTAAGTGTAGGGCCTCCTTGCTTTTGTGTATCCAAGATCAAACCTTTGAGGATTTCATGCTTCAAAGGCAGAACTCAAAATGATAATTCAGGAAGCAGGGCTAATTGGTTGAGGGCACCTAAAACCTCTGTTGGACTAGAGGAGAGTGGGGACACCCACAACGTGCCATTCTCGTATGCATCTGAAGCAGGTGATAACCTTGCAACATCATCTGCTTTTCATGGACTCTTCAAAAAATGGCTGAAAATGTTGCGCACACAATCATCATGTCAAGAAGTAGAGGAAATTTTTGGAAGACCGACGACTCCCACAATTTTACCTGAAACTCTACAAATGACTCATAGTAAGGATGGAAGTGAGGTTTTGAAGCTGGCATTGTCCCATTTTCTGTCCCTGGATGCCGCAATAACGATACCTTTGTTGATATTTGTTCCTCTGTACCTGGCTGTTAATGTAAAATATGGTGCTGAAGTTTCAAAGGAACTAACTCCATTATGGGTTTTTGGGCCACTAATTGTGGCTTTACACATCATTATAATCCGTGGTCTGTGTGCACTCTATGCCTCAAGCTTCAATCGGACTGTCGAAATACTTAGGAAAGTACCTTCTTGGTGCATTTTGGCAAACTACTACATTTTTGGCGGCGGGCTCAAAGAACAAATTGCAGTCTATCTTCTGCGGCCTATATCGAGCTTAAAACACATTGATTATATACAGCTAACAAGAAGGATATTGAAAGTATTGCAGGAATGGTTAATGGACAAGTATCTTGATTATGTGGAATCAATATGGCCATATTATTGTCGGGCAATCAGATTTTTGAAGACATCTAATCTTATTTAA
Protein sequence

>Msa0511010

MAFVAHQPQGLYVTSSTRHLSWSKRMKLKQCLTKHHMIGRTDWHHLLKQNICLSVGPPCFCVSKIKPLRISCFKGRTQNDNSGSRANWLRAPKTSVGLEESGDTHNVPFSYASEAGDNLATSSAFHGLFKKWLKMLRTQSSCQEVEEIFGRPTTPTILPETLQMTHSKDGSEVLKLALSHFLSLDAAITIPLLIFVPLYLAVNVKYGAEVSKELTPLWVFGPLIVALHIIIIRGLCALYASSFNRTVEILRKVPSWCILANYYIFGGGLKEQIAVYLLRPISSLKHIDYIQLTRRILKVLQEWLMDKYLDYVESIWPYYCRAIRFLKTSNLI*