AlfalfaGEDB | Msa0511010

M. sativa cultivar zhongmu-4 / Msa0511010

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511010	XP_003601234.1	98.795	332	4	0	1	332	1	332	0.0	684

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511010	G7J4W7	98.795	332	4	0	1	332	1	332	0.0	684

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0018870	Msa0511010	0.810575	1.076613e-50	-8.615850e-47
Msa0034320	Msa0511010	0.802007	6.881001e-49	-8.615850e-47
Msa0081300	Msa0511010	0.800496	1.402700e-48	-8.615850e-47
Msa0112340	Msa0511010	0.836224	1.060543e-56	-8.615850e-47
Msa0155550	Msa0511010	0.813691	2.251557e-51	-8.615850e-47
Msa0173610	Msa0511010	0.804337	2.267322e-49	-8.615850e-47
Msa0176710	Msa0511010	0.838731	2.416571e-57	-8.615850e-47
Msa0225010	Msa0511010	0.804476	2.121490e-49	-8.615850e-47
Msa0280140	Msa0511010	0.815555	8.705890e-52	-8.615850e-47
Msa0296000	Msa0511010	0.808273	3.357650e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511010	MtrunA17_Chr3g0117331	98.795	332	4	0	1	332	1	332	0.0	684
Msa0511010	MtrunA17_Chr4g0058851	58.997	339	131	2	1	332	1	338	7.87e-140	399

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0511010	AT5G63050.1	43.478	345	182	3	1	332	1	345	1.03e-94	285
Msa0511010	AT5G63050.2	43.323	337	178	3	9	332	3	339	6.03e-92	278

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Find 136 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCCAGCACCATAAAA+TGG	0.234882	3_4:-60324292	None:intergenic
AAAATGATAATTCAGGAAGC+AGG	0.451996	3_4:+60323029	Msa0511010:CDS
AAACCCCAGCACCATAAAAT+GGG	0.489534	3_4:-60324291	None:intergenic
AAAGGAACTAACTCCATTAT+GGG	0.335355	3_4:+60323822	Msa0511010:CDS
AAATGATAATTCAGGAAGCA+GGG	0.576629	3_4:+60323030	Msa0511010:CDS
AAATTGCAGTCTATCTTCTG+CGG	0.658647	3_4:+60324004	Msa0511010:CDS
AAATTGTAGATTGATTCAAA+TGG	0.541553	3_4:+60324801	Msa0511010:three_prime_UTR
AACAAACCTCTTTCTGGTTG+AGG	0.453914	3_4:+60324570	Msa0511010:three_prime_UTR
AAGATTTAATGTATTCTTAA+AGG	0.192237	3_4:+60324187	Msa0511010:exon
AAGCAGGACAGTGGGAGAGG+TGG	0.556583	3_4:-60324494	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAGTCGAAAAATAGTAGG+AGG	+	chr3_4:60321334-60321353	Msa0511010:five_prime_UTR	30.0%
TATGTTATGTTAGGGTTCTT+CGG	+	chr3_4:60321433-60321452	Msa0511010:five_prime_UTR	30.0%
GAAGGAAGAAAAAAAAGGAA+AGG	-	chr3_4:60321481-60321500	None:intergenic	30.0%
GTATGGAAGGAAGAAAAAAA+AGG	-	chr3_4:60321486-60321505	None:intergenic	30.0%
ATAATGATGAATGCCAAGTA+TGG	-	chr3_4:60321503-60321522	None:intergenic	30.0%
TCAACTTCAATTCCTCTTAT+TGG	+	chr3_4:60321544-60321563	Msa0511010:five_prime_UTR	30.0%
AGCTAGAAAAATAGCACAAA+TGG	-	chr3_4:60321761-60321780	None:intergenic	30.0%
TAAATATACCTGTGGTTGAT+GGG	-	chr3_4:60321904-60321923	None:intergenic	30.0%
ACAAATCATCTATGAAGTTG+TGG	-	chr3_4:60322066-60322085	None:intergenic	30.0%
AAAAATTAGACACTGATGTC+AGG	+	chr3_4:60322262-60322281	Msa0511010:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	60321325	60324966	60321325	ID=Msa0511010;Name=Msa0511010
chr3_4	mRNA	60321325	60324966	60321325	ID=Msa0511010-mRNA-1;Parent=Msa0511010;Name=Msa0511010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=321\|1\|1\|1\|0.6\|0.5\|6\|778\|332
chr3_4	exon	60321325	60321581	60321325	ID=Msa0511010-mRNA-1:exon:14359;Parent=Msa0511010-mRNA-1
chr3_4	exon	60321719	60321732	60321719	ID=Msa0511010-mRNA-1:exon:14360;Parent=Msa0511010-mRNA-1
chr3_4	exon	60321838	60321914	60321838	ID=Msa0511010-mRNA-1:exon:14361;Parent=Msa0511010-mRNA-1
chr3_4	exon	60322100	60322233	60322100	ID=Msa0511010-mRNA-1:exon:14362;Parent=Msa0511010-mRNA-1
chr3_4	exon	60322958	60323380	60322958	ID=Msa0511010-mRNA-1:exon:14363;Parent=Msa0511010-mRNA-1
chr3_4	exon	60323774	60324966	60323774	ID=Msa0511010-mRNA-1:exon:14364;Parent=Msa0511010-mRNA-1
chr3_4	five_prime_UTR	60321325	60321581	60321325	ID=Msa0511010-mRNA-1:five_prime_utr;Parent=Msa0511010-mRNA-1
chr3_4	five_prime_UTR	60321719	60321732	60321719	ID=Msa0511010-mRNA-1:five_prime_utr;Parent=Msa0511010-mRNA-1
chr3_4	five_prime_UTR	60321838	60321887	60321838	ID=Msa0511010-mRNA-1:five_prime_utr;Parent=Msa0511010-mRNA-1
chr3_4	CDS	60321888	60321914	60321888	ID=Msa0511010-mRNA-1:cds;Parent=Msa0511010-mRNA-1
chr3_4	CDS	60322100	60322233	60322100	ID=Msa0511010-mRNA-1:cds;Parent=Msa0511010-mRNA-1
chr3_4	CDS	60322958	60323380	60322958	ID=Msa0511010-mRNA-1:cds;Parent=Msa0511010-mRNA-1
chr3_4	CDS	60323774	60324188	60323774	ID=Msa0511010-mRNA-1:cds;Parent=Msa0511010-mRNA-1
chr3_4	three_prime_UTR	60324189	60324966	60324189	ID=Msa0511010-mRNA-1:three_prime_utr;Parent=Msa0511010-mRNA-1

Gene Sequence

>Msa0511010

ATGGCTTTTGTAGCCCATCAACCACAGGGTTTGTATGTGACATCTTCCACACGGCATTTGTCATGGAGCAAAAGGATGAAATTGAAGCAGTGTTTGACAAAACATCATATGATTGGAAGAACAGACTGGCATCACCTATTAAAGCAAAATATTTGTTTAAGTGTAGGGCCTCCTTGCTTTTGTGTATCCAAGATCAAACCTTTGAGGATTTCATGCTTCAAAGGCAGAACTCAAAATGATAATTCAGGAAGCAGGGCTAATTGGTTGAGGGCACCTAAAACCTCTGTTGGACTAGAGGAGAGTGGGGACACCCACAACGTGCCATTCTCGTATGCATCTGAAGCAGGTGATAACCTTGCAACATCATCTGCTTTTCATGGACTCTTCAAAAAATGGCTGAAAATGTTGCGCACACAATCATCATGTCAAGAAGTAGAGGAAATTTTTGGAAGACCGACGACTCCCACAATTTTACCTGAAACTCTACAAATGACTCATAGTAAGGATGGAAGTGAGGTTTTGAAGCTGGCATTGTCCCATTTTCTGTCCCTGGATGCCGCAATAACGATACCTTTGTTGATATTTGTTCCTCTGTACCTGGCTGTTAATGTAAAATATGGTGCTGAAGTTTCAAAGGAACTAACTCCATTATGGGTTTTTGGGCCACTAATTGTGGCTTTACACATCATTATAATCCGTGGTCTGTGTGCACTCTATGCCTCAAGCTTCAATCGGACTGTCGAAATACTTAGGAAAGTACCTTCTTGGTGCATTTTGGCAAACTACTACATTTTTGGCGGCGGGCTCAAAGAACAAATTGCAGTCTATCTTCTGCGGCCTATATCGAGCTTAAAACACATTGATTATATACAGCTAACAAGAAGGATATTGAAAGTATTGCAGGAATGGTTAATGGACAAGTATCTTGATTATGTGGAATCAATATGGCCATATTATTGTCGGGCAATCAGATTTTTGAAGACATCTAATCTTATTTAA

Protein sequence

>Msa0511010

MAFVAHQPQGLYVTSSTRHLSWSKRMKLKQCLTKHHMIGRTDWHHLLKQNICLSVGPPCFCVSKIKPLRISCFKGRTQNDNSGSRANWLRAPKTSVGLEESGDTHNVPFSYASEAGDNLATSSAFHGLFKKWLKMLRTQSSCQEVEEIFGRPTTPTILPETLQMTHSKDGSEVLKLALSHFLSLDAAITIPLLIFVPLYLAVNVKYGAEVSKELTPLWVFGPLIVALHIIIIRGLCALYASSFNRTVEILRKVPSWCILANYYIFGGGLKEQIAVYLLRPISSLKHIDYIQLTRRILKVLQEWLMDKYLDYVESIWPYYCRAIRFLKTSNLI*