Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228780 | XP_013443838.1 | 95.608 | 296 | 7 | 2 | 1 | 296 | 1 | 290 | 0.0 | 568 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228780 | sp|O80361|RK4_TOBAC | 68.372 | 215 | 67 | 1 | 49 | 263 | 40 | 253 | 1.13e-105 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012460 | Msa1228780 | 0.811602 | 6.449027e-51 | -8.615850e-47 |
| Msa0032350 | Msa1228780 | 0.814719 | 1.335222e-51 | -8.615850e-47 |
| Msa0034320 | Msa1228780 | 0.831084 | 2.039479e-55 | -8.615850e-47 |
| Msa0037300 | Msa1228780 | 0.802179 | 6.344105e-49 | -8.615850e-47 |
| Msa0043680 | Msa1228780 | 0.821323 | 4.291150e-53 | -8.615850e-47 |
| Msa0058970 | Msa1228780 | 0.813588 | 2.372896e-51 | -8.615850e-47 |
| Msa0065390 | Msa1228780 | 0.804545 | 2.051828e-49 | -8.615850e-47 |
| Msa0077910 | Msa1228780 | 0.878056 | 3.824434e-69 | -8.615850e-47 |
| Msa0081300 | Msa1228780 | 0.845382 | 4.206726e-59 | -8.615850e-47 |
| Msa0092660 | Msa1228780 | 0.805711 | 1.169860e-49 | -8.615850e-47 |
| Msa0092730 | Msa1228780 | 0.808666 | 2.768921e-50 | -8.615850e-47 |
| Msa0110710 | Msa1228780 | 0.803174 | 3.953223e-49 | -8.615850e-47 |
| Msa0605670 | Msa1228780 | 0.820916 | 5.326606e-53 | -8.615850e-47 |
| Msa0606140 | Msa1228780 | 0.803268 | 3.779931e-49 | -8.615850e-47 |
| Msa0638710 | Msa1228780 | 0.803235 | 3.839831e-49 | -8.615850e-47 |
| Msa0646710 | Msa1228780 | 0.820586 | 6.343743e-53 | -8.615850e-47 |
| Msa0647460 | Msa1228780 | 0.843184 | 1.638153e-58 | -8.615850e-47 |
| Msa0652360 | Msa1228780 | 0.820056 | 8.390388e-53 | -8.615850e-47 |
| Msa0659920 | Msa1228780 | 0.800851 | 1.187015e-48 | -8.615850e-47 |
| Msa0685520 | Msa1228780 | 0.848834 | 4.761597e-60 | -8.615850e-47 |
| Msa0690500 | Msa1228780 | 0.808248 | 3.400442e-50 | -8.615850e-47 |
| Msa0695930 | Msa1228780 | 0.833850 | 4.208123e-56 | -8.615850e-47 |
| Msa0697420 | Msa1228780 | 0.817561 | 3.094366e-52 | -8.615850e-47 |
| Msa0699200 | Msa1228780 | 0.818041 | 2.410911e-52 | -8.615850e-47 |
| Msa0703720 | Msa1228780 | 0.802864 | 4.583326e-49 | -8.615850e-47 |
| Msa0703760 | Msa1228780 | 0.805026 | 1.628532e-49 | -8.615850e-47 |
| Msa0704570 | Msa1228780 | 0.807785 | 4.266672e-50 | -8.615850e-47 |
| Msa0704720 | Msa1228780 | 0.825578 | 4.343851e-54 | -8.615850e-47 |
| Msa0705250 | Msa1228780 | 0.847002 | 1.522771e-59 | -8.615850e-47 |
| Msa0706490 | Msa1228780 | 0.825204 | 5.323460e-54 | -8.615850e-47 |
| Msa0720380 | Msa1228780 | 0.821045 | 4.974285e-53 | -8.615850e-47 |
| Msa0732100 | Msa1228780 | 0.815930 | 7.181395e-52 | -8.615850e-47 |
| Msa0748890 | Msa1228780 | 0.835842 | 1.325670e-56 | -8.615850e-47 |
| Msa0773080 | Msa1228780 | 0.833197 | 6.125638e-56 | -8.615850e-47 |
| Msa0774090 | Msa1228780 | 0.836723 | 7.918434e-57 | -8.615850e-47 |
| Msa0810370 | Msa1228780 | 0.817691 | 2.891906e-52 | -8.615850e-47 |
| Msa0841570 | Msa1228780 | 0.804170 | 2.456953e-49 | -8.615850e-47 |
| Msa0121650 | Msa1228780 | 0.829795 | 4.214631e-55 | -8.615850e-47 |
| Msa0125800 | Msa1228780 | 0.876863 | 9.954617e-69 | -8.615850e-47 |
| Msa0137600 | Msa1228780 | 0.804590 | 2.007911e-49 | -8.615850e-47 |
| Msa0144340 | Msa1228780 | 0.805279 | 1.441462e-49 | -8.615850e-47 |
| Msa0150210 | Msa1228780 | 0.811903 | 5.545908e-51 | -8.615850e-47 |
| Msa0151790 | Msa1228780 | 0.827035 | 1.953816e-54 | -8.615850e-47 |
| Msa0152380 | Msa1228780 | 0.802654 | 5.063852e-49 | -8.615850e-47 |
| Msa0155550 | Msa1228780 | 0.856419 | 3.257874e-62 | -8.615850e-47 |
| Msa0170440 | Msa1228780 | 0.877039 | 8.647248e-69 | -8.615850e-47 |
| Msa0173610 | Msa1228780 | 0.818253 | 2.158880e-52 | -8.615850e-47 |
| Msa0178020 | Msa1228780 | 0.801063 | 1.074561e-48 | -8.615850e-47 |
| Msa0182610 | Msa1228780 | 0.801397 | 9.177638e-49 | -8.615850e-47 |
| Msa0190000 | Msa1228780 | 0.843055 | 1.772381e-58 | -8.615850e-47 |
| Msa0202630 | Msa1228780 | 0.828561 | 8.393586e-55 | -8.615850e-47 |
| Msa0206970 | Msa1228780 | 0.809177 | 2.152269e-50 | -8.615850e-47 |
| Msa0234930 | Msa1228780 | 0.815323 | 9.803782e-52 | -8.615850e-47 |
| Msa1228780 | Msa1264670 | 0.871567 | 6.194666e-67 | -8.615850e-47 |
| Msa1228780 | Msa1267560 | 0.815959 | 7.074788e-52 | -8.615850e-47 |
| Msa1228780 | Msa1276380 | 0.817513 | 3.171472e-52 | -8.615850e-47 |
| Msa1228780 | Msa1279700 | 0.819502 | 1.122982e-52 | -8.615850e-47 |
| Msa1228780 | Msa1293530 | 0.825833 | 3.777329e-54 | -8.615850e-47 |
| Msa1228780 | Msa1300880 | 0.818165 | 2.260181e-52 | -8.615850e-47 |
| Msa1228780 | Msa1305650 | 0.825588 | 4.319516e-54 | -8.615850e-47 |
| Msa1228780 | Msa1324940 | 0.802357 | 5.828826e-49 | -8.615850e-47 |
| Msa1228780 | Msa1331900 | 0.817475 | 3.234177e-52 | -8.615850e-47 |
| Msa1228780 | Msa1334690 | 0.832690 | 8.186231e-56 | -8.615850e-47 |
| Msa1228780 | Msa1337950 | 0.856761 | 2.585933e-62 | -8.615850e-47 |
| Msa1228780 | Msa1349720 | 0.818610 | 1.792107e-52 | -8.615850e-47 |
| Msa1228780 | Msa1356200 | 0.862238 | 5.837717e-64 | -8.615850e-47 |
| Msa1228780 | Msa1367810 | 0.806503 | 7.971695e-50 | -8.615850e-47 |
| Msa1228780 | Msa1375120 | 0.814671 | 1.368058e-51 | -8.615850e-47 |
| Msa1228780 | Msa1376590 | 0.800076 | 1.707373e-48 | -8.615850e-47 |
| Msa1228780 | Msa1391430 | 0.850562 | 1.567071e-60 | -8.615850e-47 |
| Msa1228780 | Msa1398740 | 0.853515 | 2.270357e-61 | -8.615850e-47 |
| Msa1228780 | Msa1398840 | 0.831294 | 1.811578e-55 | -8.615850e-47 |
| Msa1228780 | Msa1406880 | 0.809398 | 1.929665e-50 | -8.615850e-47 |
| Msa1228780 | Msa1411390 | 0.800694 | 1.278188e-48 | -8.615850e-47 |
| Msa1228780 | Msa1411690 | 0.802312 | 5.955964e-49 | -8.615850e-47 |
| Msa1228780 | Msa1411830 | 0.854322 | 1.329324e-61 | -8.615850e-47 |
| Msa1228780 | Msa1412750 | 0.815160 | 1.066049e-51 | -8.615850e-47 |
| Msa1228780 | Msa1414450 | 0.822662 | 2.100786e-53 | -8.615850e-47 |
| Msa1228780 | Msa1415250 | 0.829983 | 3.791985e-55 | -8.615850e-47 |
| Msa1228780 | Msa1416460 | 0.831234 | 1.873681e-55 | -8.615850e-47 |
| Msa1228780 | Msa1418600 | 0.800968 | 1.123549e-48 | -8.615850e-47 |
| Msa1228780 | Msa1422490 | 0.802753 | 4.831171e-49 | -8.615850e-47 |
| Msa1228780 | Msa1423190 | 0.806747 | 7.077736e-50 | -8.615850e-47 |
| Msa1228780 | Msa1427020 | 0.812673 | 3.767350e-51 | -8.615850e-47 |
| Msa1228780 | Msa1437320 | 0.823909 | 1.074480e-53 | -8.615850e-47 |
| Msa1228780 | Msa1439800 | 0.808811 | 2.577977e-50 | -8.615850e-47 |
| Msa1228780 | Msa1439880 | 0.801477 | 8.839302e-49 | -8.615850e-47 |
| Msa1228780 | Msa1442030 | 0.806423 | 8.287058e-50 | -8.615850e-47 |
| Msa1228780 | Msa1449680 | 0.831760 | 1.390148e-55 | -8.615850e-47 |
| Msa1228780 | Msa1455560 | 0.834017 | 3.821506e-56 | -8.615850e-47 |
| Msa1228780 | Msa1458330 | 0.826002 | 3.444320e-54 | -8.615850e-47 |
| Msa1228780 | Msa1460650 | 0.814846 | 1.251205e-51 | -8.615850e-47 |
| Msa1228780 | Msa1464800 | 0.803122 | 4.053072e-49 | -8.615850e-47 |
| Msa0367370 | Msa1228780 | 0.808002 | 3.835630e-50 | -8.615850e-47 |
| Msa0368430 | Msa1228780 | 0.851015 | 1.168702e-60 | -8.615850e-47 |
| Msa0379450 | Msa1228780 | 0.810273 | 1.251206e-50 | -8.615850e-47 |
| Msa0382500 | Msa1228780 | 0.805327 | 1.408335e-49 | -8.615850e-47 |
| Msa0399180 | Msa1228780 | 0.819774 | 9.736158e-53 | -8.615850e-47 |
| Msa0400890 | Msa1228780 | 0.814036 | 1.889963e-51 | -8.615850e-47 |
| Msa0415930 | Msa1228780 | 0.840133 | 1.044361e-57 | -8.615850e-47 |
| Msa0425810 | Msa1228780 | 0.821389 | 4.144401e-53 | -8.615850e-47 |
| Msa0444340 | Msa1228780 | 0.844680 | 6.505257e-59 | -8.615850e-47 |
| Msa0463980 | Msa1228780 | 0.803083 | 4.129457e-49 | -8.615850e-47 |
| Msa0464730 | Msa1228780 | 0.812218 | 4.735459e-51 | -8.615850e-47 |
| Msa0472270 | Msa1228780 | 0.856770 | 2.570530e-62 | -8.615850e-47 |
| Msa0472570 | Msa1228780 | 0.816160 | 6.382511e-52 | -8.615850e-47 |
| Msa0475130 | Msa1228780 | 0.823932 | 1.061407e-53 | -8.615850e-47 |
| Msa0480150 | Msa1228780 | 0.820147 | 7.999521e-53 | -8.615850e-47 |
| Msa0992570 | Msa1228780 | 0.800912 | 1.153652e-48 | -8.615850e-47 |
| Msa1002980 | Msa1228780 | 0.818885 | 1.551823e-52 | -8.615850e-47 |
| Msa1013510 | Msa1228780 | 0.849235 | 3.682135e-60 | -8.615850e-47 |
| Msa1013560 | Msa1228780 | 0.814352 | 1.609345e-51 | -8.615850e-47 |
| Msa1022310 | Msa1228780 | 0.813157 | 2.950349e-51 | -8.615850e-47 |
| Msa1027790 | Msa1228780 | 0.807938 | 3.957711e-50 | -8.615850e-47 |
| Msa1033120 | Msa1228780 | 0.804146 | 2.485287e-49 | -8.615850e-47 |
| Msa1036370 | Msa1228780 | 0.809876 | 1.523344e-50 | -8.615850e-47 |
| Msa1045440 | Msa1228780 | 0.887770 | 1.065708e-72 | -8.615850e-47 |
| Msa1061310 | Msa1228780 | 0.814145 | 1.788483e-51 | -8.615850e-47 |
| Msa1067430 | Msa1228780 | 0.823250 | 1.532245e-53 | -8.615850e-47 |
| Msa1074730 | Msa1228780 | 0.808594 | 2.868434e-50 | -8.615850e-47 |
| Msa1084150 | Msa1228780 | 0.829955 | 3.852223e-55 | -8.615850e-47 |
| Msa1106580 | Msa1228780 | 0.814210 | 1.729878e-51 | -8.615850e-47 |
| Msa0251110 | Msa1228780 | 0.803488 | 3.403788e-49 | -8.615850e-47 |
| Msa0266100 | Msa1228780 | 0.810872 | 9.287280e-51 | -8.615850e-47 |
| Msa0273270 | Msa1228780 | 0.815651 | 8.289299e-52 | -8.615850e-47 |
| Msa0280120 | Msa1228780 | 0.839966 | 1.154936e-57 | -8.615850e-47 |
| Msa0280140 | Msa1228780 | 0.833045 | 6.680867e-56 | -8.615850e-47 |
| Msa0284260 | Msa1228780 | 0.839300 | 1.720901e-57 | -8.615850e-47 |
| Msa0288350 | Msa1228780 | 0.804876 | 1.749787e-49 | -8.615850e-47 |
| Msa0296490 | Msa1228780 | 0.808517 | 2.978847e-50 | -8.615850e-47 |
| Msa0307460 | Msa1228780 | 0.827784 | 1.291748e-54 | -8.615850e-47 |
| Msa0308430 | Msa1228780 | 0.815809 | 7.640976e-52 | -8.615850e-47 |
| Msa0311910 | Msa1228780 | 0.821027 | 5.022251e-53 | -8.615850e-47 |
| Msa0313800 | Msa1228780 | 0.809492 | 1.842310e-50 | -8.615850e-47 |
| Msa0322480 | Msa1228780 | 0.813230 | 2.843745e-51 | -8.615850e-47 |
| Msa0334780 | Msa1228780 | 0.826342 | 2.858979e-54 | -8.615850e-47 |
| Msa0342620 | Msa1228780 | 0.822097 | 2.842544e-53 | -8.615850e-47 |
| Msa0353890 | Msa1228780 | 0.802139 | 6.463417e-49 | -8.615850e-47 |
| Msa1110350 | Msa1228780 | 0.804793 | 1.821447e-49 | -8.615850e-47 |
| Msa1126310 | Msa1228780 | 0.829674 | 4.510931e-55 | -8.615850e-47 |
| Msa1127510 | Msa1228780 | 0.836011 | 1.201096e-56 | -8.615850e-47 |
| Msa1132820 | Msa1228780 | 0.800375 | 1.484553e-48 | -8.615850e-47 |
| Msa1137800 | Msa1228780 | 0.800445 | 1.436274e-48 | -8.615850e-47 |
| Msa1149960 | Msa1228780 | 0.842382 | 2.676492e-58 | -8.615850e-47 |
| Msa1154020 | Msa1228780 | 0.808293 | 3.325608e-50 | -8.615850e-47 |
| Msa1183760 | Msa1228780 | 0.890417 | 1.003930e-73 | -8.615850e-47 |
| Msa1189630 | Msa1228780 | 0.825171 | 5.419913e-54 | -8.615850e-47 |
| Msa1190300 | Msa1228780 | 0.806759 | 7.037606e-50 | -8.615850e-47 |
| Msa1199210 | Msa1228780 | 0.811728 | 6.055582e-51 | -8.615850e-47 |
| Msa1202730 | Msa1228780 | 0.822085 | 2.860603e-53 | -8.615850e-47 |
| Msa1208630 | Msa1228780 | 0.815277 | 1.003912e-51 | -8.615850e-47 |
| Msa1208750 | Msa1228780 | 0.836496 | 9.044684e-57 | -8.615850e-47 |
| Msa1214080 | Msa1228780 | 0.803982 | 2.688113e-49 | -8.615850e-47 |
| Msa1219250 | Msa1228780 | 0.825866 | 3.711260e-54 | -8.615850e-47 |
| Msa1221580 | Msa1228780 | 0.813143 | 2.971062e-51 | -8.615850e-47 |
| Msa1222020 | Msa1228780 | 0.808167 | 3.537612e-50 | -8.615850e-47 |
| Msa0504740 | Msa1228780 | 0.802324 | 5.921203e-49 | -8.615850e-47 |
| Msa0511010 | Msa1228780 | 0.823213 | 1.563565e-53 | -8.615850e-47 |
| Msa0520450 | Msa1228780 | 0.817119 | 3.890338e-52 | -8.615850e-47 |
| Msa0528870 | Msa1228780 | 0.811412 | 7.093412e-51 | -8.615850e-47 |
| Msa0550280 | Msa1228780 | 0.804937 | 1.699836e-49 | -8.615850e-47 |
| Msa0552670 | Msa1228780 | 0.823920 | 1.067850e-53 | -8.615850e-47 |
| Msa0562040 | Msa1228780 | 0.820190 | 7.818422e-53 | -8.615850e-47 |
| Msa0575670 | Msa1228780 | 0.816173 | 6.339286e-52 | -8.615850e-47 |
| Msa0577110 | Msa1228780 | 0.830723 | 2.501247e-55 | -8.615850e-47 |
| Msa0596430 | Msa1228780 | 0.810396 | 1.176728e-50 | -8.615850e-47 |
| Msa0598080 | Msa1228780 | 0.811916 | 5.509171e-51 | -8.615850e-47 |
| Msa0600940 | Msa1228780 | 0.801210 | 1.002348e-48 | -8.615850e-47 |
| Msa0893390 | Msa1228780 | 0.803964 | 2.710758e-49 | -8.615850e-47 |
| Msa0905200 | Msa1228780 | 0.804658 | 1.943246e-49 | -8.615850e-47 |
| Msa0908080 | Msa1228780 | 0.807426 | 5.085466e-50 | -8.615850e-47 |
| Msa0959970 | Msa1228780 | 0.808366 | 3.209312e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228780 | MtrunA17_Chr8g0335501 | 95.608 | 296 | 7 | 2 | 1 | 296 | 1 | 290 | 0.0 | 568 |
| Msa1228780 | MtrunA17_Chr3g0138321 | 36.364 | 209 | 127 | 4 | 52 | 258 | 81 | 285 | 5.10e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1228780 | AT1G07320.2 | 66.390 | 241 | 76 | 3 | 26 | 263 | 24 | 262 | 9.29e-106 | 309 |
| Msa1228780 | AT1G07320.4 | 66.390 | 241 | 76 | 3 | 26 | 263 | 24 | 262 | 9.48e-106 | 309 |
| Msa1228780 | AT1G07320.3 | 66.390 | 241 | 76 | 3 | 26 | 263 | 24 | 262 | 9.48e-106 | 309 |
| Msa1228780 | AT1G07320.1 | 66.390 | 241 | 76 | 3 | 26 | 263 | 24 | 262 | 9.94e-106 | 309 |
| Msa1228780 | AT2G20060.1 | 35.294 | 204 | 122 | 5 | 57 | 256 | 91 | 288 | 2.13e-27 | 108 |
Find 97 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGTTGTGGTGGAGGAATT+TGG | 0.166464 | 8_2:+4273940 | Msa1228780:CDS |
| CGGTTGTGGTGGAGGAATTT+GGG | 0.175200 | 8_2:+4273941 | Msa1228780:CDS |
| ATTTGGAGTGAATTTGATTT+TGG | 0.177945 | 8_2:-4273506 | None:intergenic |
| TGTGAATGTGAATTTGAATT+TGG | 0.221911 | 8_2:-4273523 | None:intergenic |
| ATACTCCAATCCCTTGGTTT+GGG | 0.237337 | 8_2:-4273853 | None:intergenic |
| ATACTAATGATTTACCTTCT+TGG | 0.262790 | 8_2:-4274266 | None:intergenic |
| CGCGGACTTCAGCGCGTGTT+AGG | 0.273847 | 8_2:-4273732 | None:intergenic |
| AATACTCCAATCCCTTGGTT+TGG | 0.310060 | 8_2:-4273854 | None:intergenic |
| CTTTCTGAAGAAGTTGTATC+TGG | 0.327189 | 8_2:+4275928 | Msa1228780:three_prime_UTR |
| TTCAAATAATCCACAGCATC+AGG | 0.333341 | 8_2:-4274174 | None:intergenic |
| GAGCAATAACCTCTATAAAA+TGG | 0.343963 | 8_2:-4275671 | None:intergenic |
| TTGTTGGCTAGTAGGAATAT+TGG | 0.349461 | 8_2:+4274078 | Msa1228780:CDS |
| GAAAACCGGCCGAGCACGTC+AGG | 0.350829 | 8_2:+4273783 | Msa1228780:CDS |
| CCTATCTCTTCAAAATTGAT+TGG | 0.385816 | 8_2:-4273331 | None:intergenic |
| AGAAAGTGTTGTTGGCTAGT+AGG | 0.396950 | 8_2:+4274070 | Msa1228780:CDS |
| GATTATTTGAATGGTAGGTA+TGG | 0.413472 | 8_2:+4274186 | Msa1228780:CDS |
| TGTTGGCTAGTAGGAATATT+GGG | 0.414394 | 8_2:+4274079 | Msa1228780:CDS |
| TCGTCACTTTCTTCTGCGTC+TGG | 0.415582 | 8_2:-4275603 | None:intergenic |
| ATAGAGGTTATTGCTCATAC+AGG | 0.420718 | 8_2:+4275678 | Msa1228780:three_prime_UTR |
| TTGCTCATACAGGGTATAGA+AGG | 0.424749 | 8_2:+4275688 | Msa1228780:three_prime_UTR |
| GGAATTTGGGGATGAGTTTG+AGG | 0.426910 | 8_2:+4273954 | Msa1228780:CDS |
| CGCGCTGAAGTCCGCGGTGG+TGG | 0.431696 | 8_2:+4273739 | Msa1228780:CDS |
| GAGTATTAAGATTAATAAGA+AGG | 0.437393 | 8_2:+4273870 | Msa1228780:CDS |
| TAGAATTCAAGTAGCATGTA+AGG | 0.440139 | 8_2:+4275761 | Msa1228780:three_prime_UTR |
| ATTATTTGAATGGTAGGTAT+GGG | 0.441937 | 8_2:+4274187 | Msa1228780:CDS |
| AAAGAAAGAGAAGTTGAAGT+TGG | 0.442195 | 8_2:-4273448 | None:intergenic |
| CTCCCACTCCTCTCCTTCTC+CGG | 0.450034 | 8_2:+4273589 | Msa1228780:CDS |
| GGAACCCTGACGTGCTCGGC+CGG | 0.453508 | 8_2:-4273788 | None:intergenic |
| TTGGCCCCAAACCAAGGGAT+TGG | 0.458041 | 8_2:+4273848 | Msa1228780:CDS |
| CCCTACAACCAAAAGAAAAC+CGG | 0.459895 | 8_2:+4273769 | Msa1228780:CDS |
| ATCTTAATACTCCAATCCCT+TGG | 0.462823 | 8_2:-4273859 | None:intergenic |
| GATGCTGTGGATTATTTGAA+TGG | 0.463739 | 8_2:+4274177 | Msa1228780:CDS |
| CTTGTGCAAATGCATGTATA+TGG | 0.468180 | 8_2:+4275864 | Msa1228780:three_prime_UTR |
| TCCTTCTCCGGCGAGAAAAT+CGG | 0.472488 | 8_2:+4273601 | Msa1228780:CDS |
| GGTGGCGAGTTTGCAAGAAA+TGG | 0.474159 | 8_2:-4273566 | None:intergenic |
| CGCCGGAGAAGGAGAGGAGT+GGG | 0.479277 | 8_2:-4273591 | None:intergenic |
| CGGAGAAGGAGAGGAGTGGG+AGG | 0.479353 | 8_2:-4273588 | None:intergenic |
| TTATTGCAGCGATGAAAAGA+TGG | 0.486628 | 8_2:+4273998 | Msa1228780:CDS |
| GCGGACTTCAGCGCGTGTTA+GGG | 0.488060 | 8_2:-4273731 | None:intergenic |
| GGCGAGTGCAGCGGTGAATA+CGG | 0.492300 | 8_2:+4273921 | Msa1228780:CDS |
| GGTGAATACGGTTGTGGTGG+AGG | 0.493119 | 8_2:+4273933 | Msa1228780:CDS |
| GAATTTGGGGATGAGTTTGA+GGG | 0.511647 | 8_2:+4273955 | Msa1228780:CDS |
| TTGAATTCTAAGTGATGGAA+TGG | 0.514921 | 8_2:-4275748 | None:intergenic |
| CTGTGGATTATTTGAATGGT+AGG | 0.517004 | 8_2:+4274181 | Msa1228780:CDS |
| GAAGGAGAGGAGTGGGAGGG+TGG | 0.517110 | 8_2:-4273584 | None:intergenic |
| TGTTCTTACCCCTGATGCTG+TGG | 0.521184 | 8_2:+4274164 | Msa1228780:CDS |
| GTGGACGACGGCGCGTGAGG+TGG | 0.527072 | 8_2:-4273659 | None:intergenic |
| GAAGTAGAGGATAGCCAAGA+AGG | 0.527296 | 8_2:+4274252 | Msa1228780:CDS |
| GGTGAAGGAGAAAGTGTTGT+TGG | 0.529186 | 8_2:+4274062 | Msa1228780:CDS |
| AGCGCGTGTTAGGGTGGAAG+CGG | 0.529585 | 8_2:-4273722 | None:intergenic |
| GACTGGAACCCTGACGTGCT+CGG | 0.533930 | 8_2:-4273792 | None:intergenic |
| TACTCCAATCCCTTGGTTTG+GGG | 0.536999 | 8_2:-4273852 | None:intergenic |
| CTCTTCAAAATTGATTGGTG+TGG | 0.537756 | 8_2:-4273326 | None:intergenic |
| TATTGCAGCGATGAAAAGAT+GGG | 0.541925 | 8_2:+4273999 | Msa1228780:CDS |
| GATGATGGCGCGGTGGACGA+CGG | 0.542754 | 8_2:-4273671 | None:intergenic |
| AGCGATGAAAAGATGGGGAT+TGG | 0.544663 | 8_2:+4274005 | Msa1228780:CDS |
| GGTTGTGGTGGAGGAATTTG+GGG | 0.548611 | 8_2:+4273942 | Msa1228780:CDS |
| ATGATTTAAAGTTCTTTGCA+CGG | 0.552159 | 8_2:+4275638 | Msa1228780:exon |
| GCTACTTGAATTCTAAGTGA+TGG | 0.552186 | 8_2:-4275753 | None:intergenic |
| AGATTAATAAGAAGGAGAAG+AGG | 0.552891 | 8_2:+4273878 | Msa1228780:CDS |
| CAGATACAACTTCTTCAGAA+AGG | 0.555625 | 8_2:-4275927 | None:intergenic |
| TCAAATAATCCACAGCATCA+GGG | 0.560294 | 8_2:-4274173 | None:intergenic |
| CAAAATTGATTGGTGTGGTG+TGG | 0.565124 | 8_2:-4273321 | None:intergenic |
| GCGGTGGACGACGGCGCGTG+AGG | 0.567418 | 8_2:-4273662 | None:intergenic |
| TAGAGGTTATTGCTCATACA+GGG | 0.569850 | 8_2:+4275679 | Msa1228780:three_prime_UTR |
| AAAATTGATTGGTGTGGTGT+GGG | 0.572985 | 8_2:-4273320 | None:intergenic |
| ACGACGGCGCGTGAGGTGGA+AGG | 0.584809 | 8_2:-4273655 | None:intergenic |
| TGCAGCGGTGAATACGGTTG+TGG | 0.586863 | 8_2:+4273927 | Msa1228780:CDS |
| ACACCTCTACGACCCGGCGG+TGG | 0.588917 | 8_2:+4273817 | Msa1228780:CDS |
| GGAGAAGGAGAGGAGTGGGA+GGG | 0.590282 | 8_2:-4273587 | None:intergenic |
| AATTTGGGGATGAGTTTGAG+GGG | 0.592221 | 8_2:+4273956 | Msa1228780:CDS |
| TCATACAAATTCAACGTCCT+CGG | 0.595999 | 8_2:-4274120 | None:intergenic |
| TCGCCGGAGAAGGAGAGGAG+TGG | 0.605970 | 8_2:-4273592 | None:intergenic |
| TTATTTGAATGGTAGGTATG+GGG | 0.606640 | 8_2:+4274188 | Msa1228780:CDS |
| ACACCACCGCCGGGTCGTAG+AGG | 0.608611 | 8_2:-4273820 | None:intergenic |
| GGGTCGTAGAGGTGTACGAC+TGG | 0.617081 | 8_2:-4273809 | None:intergenic |
| GACTGCGGTGGCGAGTGCAG+CGG | 0.617812 | 8_2:+4273912 | Msa1228780:CDS |
| AAGATGGGGATTGGATCCGA+CGG | 0.619006 | 8_2:+4274014 | Msa1228780:CDS |
| GAGGCTTGCGATTTCGACTG+CGG | 0.627957 | 8_2:+4273897 | Msa1228780:CDS |
| TGGTGATTATGTCGAACAAG+AGG | 0.637010 | 8_2:+4274230 | Msa1228780:CDS |
| CAAATAATCCACAGCATCAG+GGG | 0.638391 | 8_2:-4274172 | None:intergenic |
| TGTCGAACAAGAGGAAGTAG+AGG | 0.639664 | 8_2:+4274239 | Msa1228780:CDS |
| AAAACCGGCCGAGCACGTCA+GGG | 0.642897 | 8_2:+4273784 | Msa1228780:CDS |
| GACAGTGAACAAGATGATGA+TGG | 0.646519 | 8_2:+4274210 | Msa1228780:CDS |
| CGCAGAAGAAAGTGACGATG+TGG | 0.649833 | 8_2:+4275608 | Msa1228780:CDS |
| GCGTGAGGTGGAAGGAGATG+CGG | 0.654440 | 8_2:-4273647 | None:intergenic |
| GCTTGCGATTTCGACTGCGG+TGG | 0.656264 | 8_2:+4273900 | Msa1228780:CDS |
| ATTGCAGCGATGAAAAGATG+GGG | 0.662449 | 8_2:+4274000 | Msa1228780:CDS |
| AGCGGTGAATACGGTTGTGG+TGG | 0.668130 | 8_2:+4273930 | Msa1228780:CDS |
| TGAGGGGAATGCGAAGACGA+AGG | 0.671267 | 8_2:+4273972 | Msa1228780:CDS |
| GAAGGTCGTGGATGATGGCG+CGG | 0.674098 | 8_2:-4273681 | None:intergenic |
| CTAACACGCGCTGAAGTCCG+CGG | 0.679806 | 8_2:+4273733 | Msa1228780:CDS |
| GGTCGTGGATGATGGCGCGG+TGG | 0.680737 | 8_2:-4273678 | None:intergenic |
| AGTCGTACACCTCTACGACC+CGG | 0.699283 | 8_2:+4273811 | Msa1228780:CDS |
| GACCTTCAAAACAAACGTCG+CGG | 0.705449 | 8_2:+4273697 | Msa1228780:CDS |
| ACACGCGCTGAAGTCCGCGG+TGG | 0.728787 | 8_2:+4273736 | Msa1228780:CDS |
| CGTACACCTCTACGACCCGG+CGG | 0.810768 | 8_2:+4273814 | Msa1228780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGATTAAAAAAATTACT+AGG | - | chr8_2:4275826-4275845 | None:intergenic | 10.0% |
| !!! | GAATAAGTTTTTTACAAAAT+TGG | - | chr8_2:4274888-4274907 | None:intergenic | 15.0% |
| !! | GAGTATTAAGATTAATAAGA+AGG | + | chr8_2:4273870-4273889 | Msa1228780:CDS | 20.0% |
| !!! | TAGTTTTTAAATTGAAGTTG+CGG | + | chr8_2:4274429-4274448 | Msa1228780:intron | 20.0% |
| !! | ACAAGATACAATTACAAATT+CGG | + | chr8_2:4274520-4274539 | Msa1228780:intron | 20.0% |
| !!! | TTTTTACAAAATTGGATACA+TGG | - | chr8_2:4274880-4274899 | None:intergenic | 20.0% |
| !! | TATTTGAAAATGTTTCATTG+AGG | + | chr8_2:4275024-4275043 | Msa1228780:intron | 20.0% |
| !! | TTATAAGTAGTTCACTTATT+TGG | + | chr8_2:4275187-4275206 | Msa1228780:intron | 20.0% |
| ! | CTGAATCCAAACAAAAAAAA+TGG | + | chr8_2:4273402-4273421 | Msa1228780:exon | 25.0% |
| !!! | TTTGGAGTGAATTTGATTTT+GGG | - | chr8_2:4273508-4273527 | None:intergenic | 25.0% |
| !!! | ATTTGGAGTGAATTTGATTT+TGG | - | chr8_2:4273509-4273528 | None:intergenic | 25.0% |
| ! | TGTGAATGTGAATTTGAATT+TGG | - | chr8_2:4273526-4273545 | None:intergenic | 25.0% |
| ! | ATTATTTGAATGGTAGGTAT+GGG | + | chr8_2:4274187-4274206 | Msa1228780:CDS | 25.0% |
| ! | ATACTAATGATTTACCTTCT+TGG | - | chr8_2:4274269-4274288 | None:intergenic | 25.0% |
| ! | TACTAGTTGAATATTGATGT+CGG | + | chr8_2:4274381-4274400 | Msa1228780:intron | 25.0% |
| ! | GCAACTTCAATTTAAAAACT+AGG | - | chr8_2:4274430-4274449 | None:intergenic | 25.0% |
| !! | ATATGTTGGTCAATTTTAGA+TGG | + | chr8_2:4274474-4274493 | Msa1228780:intron | 25.0% |
| !! | AATTTTAGATGGTACTATTG+TGG | + | chr8_2:4274485-4274504 | Msa1228780:intron | 25.0% |
| !!! | GCAGCTATAGTTTTAAATAA+AGG | - | chr8_2:4274708-4274727 | None:intergenic | 25.0% |
| !!! | TGCAGATCTTTTAAAATCTT+GGG | + | chr8_2:4274725-4274744 | Msa1228780:intron | 25.0% |
| !! | GGATAAACTTTTATTGAACA+TGG | + | chr8_2:4274775-4274794 | Msa1228780:intron | 25.0% |
| ! | TATTCCTTAAGCATTATAGT+AGG | + | chr8_2:4274903-4274922 | Msa1228780:intron | 25.0% |
| ! | TGAATTGAAATGTTTCCTTT+AGG | + | chr8_2:4274967-4274986 | Msa1228780:intron | 25.0% |
| ! | TTGAAATGATTTCTACCTAA+AGG | - | chr8_2:4274985-4275004 | None:intergenic | 25.0% |
| ! | GGTAGAAATCATTTCAAATT+TGG | + | chr8_2:4274988-4275007 | Msa1228780:intron | 25.0% |
| ! | GGTAGAAATCAATTCAAATT+TGG | + | chr8_2:4275045-4275064 | Msa1228780:intron | 25.0% |
| !!! | ATTTGGTTTAAGTTGCTAAA+TGG | + | chr8_2:4275062-4275081 | Msa1228780:intron | 25.0% |
| !! | TTATTTGGAGTCATTAACTA+TGG | + | chr8_2:4275202-4275221 | Msa1228780:intron | 25.0% |
| !!! | TTTTGAGTTGCTTATTATTG+TGG | + | chr8_2:4275508-4275527 | Msa1228780:intron | 25.0% |
| ! | ATGAGTCTGAGTAATATAAT+AGG | + | chr8_2:4275542-4275561 | Msa1228780:intron | 25.0% |
| ! | AATATAATAGGTTTCTGACT+TGG | + | chr8_2:4275554-4275573 | Msa1228780:intron | 25.0% |
| !! | ATGATTTAAAGTTCTTTGCA+CGG | + | chr8_2:4275638-4275657 | Msa1228780:exon | 25.0% |
| !! | TGTATTGTACCATTTTATAG+AGG | + | chr8_2:4275662-4275681 | Msa1228780:three_prime_UTR | 25.0% |
| ! | ATGGAAAAAAGCAAATACAT+TGG | - | chr8_2:4275732-4275751 | None:intergenic | 25.0% |
| CCTATCTCTTCAAAATTGAT+TGG | - | chr8_2:4273334-4273353 | None:intergenic | 30.0% | |
| !! | CCAATCAATTTTGAAGAGAT+AGG | + | chr8_2:4273331-4273350 | Msa1228780:five_prime_UTR | 30.0% |
| !!! | GTGAAGCCATTTTTTTTGTT+TGG | - | chr8_2:4273411-4273430 | None:intergenic | 30.0% |
| AAAGAAAGAGAAGTTGAAGT+TGG | - | chr8_2:4273451-4273470 | None:intergenic | 30.0% | |
| AGATTAATAAGAAGGAGAAG+AGG | + | chr8_2:4273878-4273897 | Msa1228780:CDS | 30.0% | |
| !!! | GAAAGTGACGTTTTTTATGA+TGG | + | chr8_2:4274038-4274057 | Msa1228780:CDS | 30.0% |
| GATTATTTGAATGGTAGGTA+TGG | + | chr8_2:4274186-4274205 | Msa1228780:CDS | 30.0% | |
| TTATTTGAATGGTAGGTATG+GGG | + | chr8_2:4274188-4274207 | Msa1228780:CDS | 30.0% | |
| TTAAATTGAAGTTGCGGTTA+TGG | + | chr8_2:4274435-4274454 | Msa1228780:intron | 30.0% | |
| !!! | CTGCAGATCTTTTAAAATCT+TGG | + | chr8_2:4274724-4274743 | Msa1228780:intron | 30.0% |
| ACAACCTACTATAATGCTTA+AGG | - | chr8_2:4274910-4274929 | None:intergenic | 30.0% | |
| !! | GTGAACATTCTGAAATATGA+AGG | + | chr8_2:4275093-4275112 | Msa1228780:intron | 30.0% |
| AAAATGAGTCAGTGAGATTT+AGG | - | chr8_2:4275398-4275417 | None:intergenic | 30.0% | |
| GAGCAATAACCTCTATAAAA+TGG | - | chr8_2:4275674-4275693 | None:intergenic | 30.0% | |
| ! | TTGAATTCTAAGTGATGGAA+TGG | - | chr8_2:4275751-4275770 | None:intergenic | 30.0% |
| TAGAATTCAAGTAGCATGTA+AGG | + | chr8_2:4275761-4275780 | Msa1228780:three_prime_UTR | 30.0% | |
| CTCTTCAAAATTGATTGGTG+TGG | - | chr8_2:4273329-4273348 | None:intergenic | 35.0% | |
| !! | TCTTTTGGTTGTAGGGTTTT+CGG | - | chr8_2:4273765-4273784 | None:intergenic | 35.0% |
| ATCTTAATACTCCAATCCCT+TGG | - | chr8_2:4273862-4273881 | None:intergenic | 35.0% | |
| TTATTGCAGCGATGAAAAGA+TGG | + | chr8_2:4273998-4274017 | Msa1228780:CDS | 35.0% | |
| TATTGCAGCGATGAAAAGAT+GGG | + | chr8_2:4273999-4274018 | Msa1228780:CDS | 35.0% | |
| !!! | AGTGACGTTTTTTATGATGG+AGG | + | chr8_2:4274041-4274060 | Msa1228780:CDS | 35.0% |
| !!! | GTTTTTTATGATGGAGGTGA+AGG | + | chr8_2:4274047-4274066 | Msa1228780:CDS | 35.0% |
| ! | TTGTTGGCTAGTAGGAATAT+TGG | + | chr8_2:4274078-4274097 | Msa1228780:CDS | 35.0% |
| ! | TGTTGGCTAGTAGGAATATT+GGG | + | chr8_2:4274079-4274098 | Msa1228780:CDS | 35.0% |
| TCATACAAATTCAACGTCCT+CGG | - | chr8_2:4274123-4274142 | None:intergenic | 35.0% | |
| TCAAATAATCCACAGCATCA+GGG | - | chr8_2:4274176-4274195 | None:intergenic | 35.0% | |
| TTCAAATAATCCACAGCATC+AGG | - | chr8_2:4274177-4274196 | None:intergenic | 35.0% | |
| ! | GATGCTGTGGATTATTTGAA+TGG | + | chr8_2:4274177-4274196 | Msa1228780:CDS | 35.0% |
| ! | CTGTGGATTATTTGAATGGT+AGG | + | chr8_2:4274181-4274200 | Msa1228780:CDS | 35.0% |
| GATGTTGTGATCACAAATGT+GGG | + | chr8_2:4274542-4274561 | Msa1228780:intron | 35.0% | |
| TGTAGAGATCCTTGATATTG+CGG | + | chr8_2:4274593-4274612 | Msa1228780:intron | 35.0% | |
| GTGTTAGATAGGAGTTAGTT+TGG | + | chr8_2:4274754-4274773 | Msa1228780:intron | 35.0% | |
| !! | TGTGTAGTCTTATTTGTCAC+TGG | + | chr8_2:4275277-4275296 | Msa1228780:intron | 35.0% |
| TGTGTATTGGACATTCATGT+TGG | + | chr8_2:4275446-4275465 | Msa1228780:intron | 35.0% | |
| AGCAACTCAAAAGTTACAGA+GGG | - | chr8_2:4275500-4275519 | None:intergenic | 35.0% | |
| AAGCAACTCAAAAGTTACAG+AGG | - | chr8_2:4275501-4275520 | None:intergenic | 35.0% | |
| ! | CTTGGTTGCTTTCTTCTATT+TGG | + | chr8_2:4275572-4275591 | Msa1228780:intron | 35.0% |
| ATAGAGGTTATTGCTCATAC+AGG | + | chr8_2:4275678-4275697 | Msa1228780:three_prime_UTR | 35.0% | |
| TAGAGGTTATTGCTCATACA+GGG | + | chr8_2:4275679-4275698 | Msa1228780:three_prime_UTR | 35.0% | |
| GCTACTTGAATTCTAAGTGA+TGG | - | chr8_2:4275756-4275775 | None:intergenic | 35.0% | |
| CTTGTGCAAATGCATGTATA+TGG | + | chr8_2:4275864-4275883 | Msa1228780:three_prime_UTR | 35.0% | |
| CAGATACAACTTCTTCAGAA+AGG | - | chr8_2:4275930-4275949 | None:intergenic | 35.0% | |
| ! | CTTTCTGAAGAAGTTGTATC+TGG | + | chr8_2:4275928-4275947 | Msa1228780:three_prime_UTR | 35.0% |
| ! | TTTTCTTGTACTGCTTCTAC+TGG | + | chr8_2:4275960-4275979 | Msa1228780:three_prime_UTR | 35.0% |
| !! | CCGGTTTTCTTTTGGTTGTA+GGG | - | chr8_2:4273772-4273791 | None:intergenic | 40.0% |
| CCCTACAACCAAAAGAAAAC+CGG | + | chr8_2:4273769-4273788 | Msa1228780:CDS | 40.0% | |
| ATACTCCAATCCCTTGGTTT+GGG | - | chr8_2:4273856-4273875 | None:intergenic | 40.0% | |
| AATACTCCAATCCCTTGGTT+TGG | - | chr8_2:4273857-4273876 | None:intergenic | 40.0% | |
| GAATTTGGGGATGAGTTTGA+GGG | + | chr8_2:4273955-4273974 | Msa1228780:CDS | 40.0% | |
| AATTTGGGGATGAGTTTGAG+GGG | + | chr8_2:4273956-4273975 | Msa1228780:CDS | 40.0% | |
| ATTGCAGCGATGAAAAGATG+GGG | + | chr8_2:4274000-4274019 | Msa1228780:CDS | 40.0% | |
| ! | AAAAACGTCACTTTCTCCGT+CGG | - | chr8_2:4274033-4274052 | None:intergenic | 40.0% |
| !! | AGAAAGTGTTGTTGGCTAGT+AGG | + | chr8_2:4274070-4274089 | Msa1228780:CDS | 40.0% |
| CAAATAATCCACAGCATCAG+GGG | - | chr8_2:4274175-4274194 | None:intergenic | 40.0% | |
| GACAGTGAACAAGATGATGA+TGG | + | chr8_2:4274210-4274229 | Msa1228780:CDS | 40.0% | |
| TGGTGATTATGTCGAACAAG+AGG | + | chr8_2:4274230-4274249 | Msa1228780:CDS | 40.0% | |
| GCGTGCAATTGTTGATATGT+TGG | + | chr8_2:4274460-4274479 | Msa1228780:intron | 40.0% | |
| GGATGTTGTGATCACAAATG+TGG | + | chr8_2:4274541-4274560 | Msa1228780:intron | 40.0% | |
| TTGTGATCACAAATGTGGGT+GGG | + | chr8_2:4274546-4274565 | Msa1228780:intron | 40.0% | |
| GACAACATCAAAGACCGTTA+TGG | + | chr8_2:4274652-4274671 | Msa1228780:intron | 40.0% | |
| !! | ACTGGCTTTAGCCTTAACTT+TGG | + | chr8_2:4275295-4275314 | Msa1228780:intron | 40.0% |
| !! | TTTAGCCTTAACTTTGGAGC+TGG | + | chr8_2:4275301-4275320 | Msa1228780:intron | 40.0% |
| AGATACCAGCTCCAAAGTTA+AGG | - | chr8_2:4275309-4275328 | None:intergenic | 40.0% | |
| TTGTGCATGTGTGTGTGTAT+TGG | + | chr8_2:4275433-4275452 | Msa1228780:intron | 40.0% | |
| !! | TGGACATTCATGTTGGTAGT+TGG | + | chr8_2:4275453-4275472 | Msa1228780:intron | 40.0% |
| !! | GGACATTCATGTTGGTAGTT+GGG | + | chr8_2:4275454-4275473 | Msa1228780:intron | 40.0% |
| GCTTTCTTCTATTTGGACAC+AGG | + | chr8_2:4275579-4275598 | Msa1228780:intron | 40.0% | |
| TTGCTCATACAGGGTATAGA+AGG | + | chr8_2:4275688-4275707 | Msa1228780:three_prime_UTR | 40.0% | |
| !!! | GTTTTGAAGGTCGTGGATGA+TGG | - | chr8_2:4273689-4273708 | None:intergenic | 45.0% |
| !!! | GACGTTTGTTTTGAAGGTCG+TGG | - | chr8_2:4273696-4273715 | None:intergenic | 45.0% |
| GACCTTCAAAACAAACGTCG+CGG | + | chr8_2:4273697-4273716 | Msa1228780:CDS | 45.0% | |
| !! | GCCGGTTTTCTTTTGGTTGT+AGG | - | chr8_2:4273773-4273792 | None:intergenic | 45.0% |
| !!! | TGATTTTTGGCCCCAAACCA+AGG | + | chr8_2:4273842-4273861 | Msa1228780:CDS | 45.0% |
| !!! | GATTTTTGGCCCCAAACCAA+GGG | + | chr8_2:4273843-4273862 | Msa1228780:CDS | 45.0% |
| ! | TACTCCAATCCCTTGGTTTG+GGG | - | chr8_2:4273855-4273874 | None:intergenic | 45.0% |
| GGAATTTGGGGATGAGTTTG+AGG | + | chr8_2:4273954-4273973 | Msa1228780:CDS | 45.0% | |
| AGCGATGAAAAGATGGGGAT+TGG | + | chr8_2:4274005-4274024 | Msa1228780:CDS | 45.0% | |
| !! | GGTGAAGGAGAAAGTGTTGT+TGG | + | chr8_2:4274062-4274081 | Msa1228780:CDS | 45.0% |
| TGTCGAACAAGAGGAAGTAG+AGG | + | chr8_2:4274239-4274258 | Msa1228780:CDS | 45.0% | |
| GAAGTAGAGGATAGCCAAGA+AGG | + | chr8_2:4274252-4274271 | Msa1228780:CDS | 45.0% | |
| AGATGGTACTATTGTGGTCG+TGG | + | chr8_2:4274491-4274510 | Msa1228780:intron | 45.0% | |
| GTTGTGATCACAAATGTGGG+TGG | + | chr8_2:4274545-4274564 | Msa1228780:intron | 45.0% | |
| TCACAAATGTGGGTGGGATA+AGG | + | chr8_2:4274552-4274571 | Msa1228780:intron | 45.0% | |
| CACAAATGTGGGTGGGATAA+GGG | + | chr8_2:4274553-4274572 | Msa1228780:intron | 45.0% | |
| AAGGTCTGCGACTGAGATTT+GGG | - | chr8_2:4274689-4274708 | None:intergenic | 45.0% | |
| AAAGGTCTGCGACTGAGATT+TGG | - | chr8_2:4274690-4274709 | None:intergenic | 45.0% | |
| ! | TTGGGCATTGCGTGTTAGAT+AGG | + | chr8_2:4274743-4274762 | Msa1228780:intron | 45.0% |
| GGTGGCGAGTTTGCAAGAAA+TGG | - | chr8_2:4273569-4273588 | None:intergenic | 50.0% | |
| TCCTTCTCCGGCGAGAAAAT+CGG | + | chr8_2:4273601-4273620 | Msa1228780:CDS | 50.0% | |
| !!! | TGATTCGCCGATTTTCTCGC+CGG | - | chr8_2:4273611-4273630 | None:intergenic | 50.0% |
| !!! | TGCCGCGACGTTTGTTTTGA+AGG | - | chr8_2:4273702-4273721 | None:intergenic | 50.0% |
| ! | ACGGTTGTGGTGGAGGAATT+TGG | + | chr8_2:4273940-4273959 | Msa1228780:CDS | 50.0% |
| ! | CGGTTGTGGTGGAGGAATTT+GGG | + | chr8_2:4273941-4273960 | Msa1228780:CDS | 50.0% |
| ! | GGTTGTGGTGGAGGAATTTG+GGG | + | chr8_2:4273942-4273961 | Msa1228780:CDS | 50.0% |
| AAGATGGGGATTGGATCCGA+CGG | + | chr8_2:4274014-4274033 | Msa1228780:CDS | 50.0% | |
| !! | CGTTGAAGATTTTGACGCCG+AGG | + | chr8_2:4274103-4274122 | Msa1228780:CDS | 50.0% |
| TGTTCTTACCCCTGATGCTG+TGG | + | chr8_2:4274164-4274183 | Msa1228780:CDS | 50.0% | |
| CCACACATGCCGCAATATCA+AGG | - | chr8_2:4274605-4274624 | None:intergenic | 50.0% | |
| CCTTGATATTGCGGCATGTG+TGG | + | chr8_2:4274602-4274621 | Msa1228780:intron | 50.0% | |
| GGGGGGCTACATAACCATAA+CGG | - | chr8_2:4274669-4274688 | None:intergenic | 50.0% | |
| AGGTCTGCGACTGAGATTTG+GGG | - | chr8_2:4274688-4274707 | None:intergenic | 50.0% | |
| ! | TCGTCACTTTCTTCTGCGTC+TGG | - | chr8_2:4275606-4275625 | None:intergenic | 50.0% |
| CGCAGAAGAAAGTGACGATG+TGG | + | chr8_2:4275608-4275627 | Msa1228780:CDS | 50.0% | |
| ! | TTTTCTCGCCGGAGAAGGAG+AGG | - | chr8_2:4273600-4273619 | None:intergenic | 55.0% |
| !! | GTGCTCGGCCGGTTTTCTTT+TGG | - | chr8_2:4273780-4273799 | None:intergenic | 55.0% |
| AGTCGTACACCTCTACGACC+CGG | + | chr8_2:4273811-4273830 | Msa1228780:CDS | 55.0% | |
| CCAAAAATCACACCACCGCC+GGG | - | chr8_2:4273832-4273851 | None:intergenic | 55.0% | |
| GCCAAAAATCACACCACCGC+CGG | - | chr8_2:4273833-4273852 | None:intergenic | 55.0% | |
| TTGGCCCCAAACCAAGGGAT+TGG | + | chr8_2:4273848-4273867 | Msa1228780:CDS | 55.0% | |
| GAGGCTTGCGATTTCGACTG+CGG | + | chr8_2:4273897-4273916 | Msa1228780:CDS | 55.0% | |
| TGCAGCGGTGAATACGGTTG+TGG | + | chr8_2:4273927-4273946 | Msa1228780:CDS | 55.0% | |
| AGCGGTGAATACGGTTGTGG+TGG | + | chr8_2:4273930-4273949 | Msa1228780:CDS | 55.0% | |
| GGTGAATACGGTTGTGGTGG+AGG | + | chr8_2:4273933-4273952 | Msa1228780:CDS | 55.0% | |
| TGAGGGGAATGCGAAGACGA+AGG | + | chr8_2:4273972-4273991 | Msa1228780:CDS | 55.0% | |
| GTCTGCGACTGAGATTTGGG+GGG | - | chr8_2:4274686-4274705 | None:intergenic | 55.0% | |
| GGTCTGCGACTGAGATTTGG+GGG | - | chr8_2:4274687-4274706 | None:intergenic | 55.0% | |
| GGAGAAGGAGAGGAGTGGGA+GGG | - | chr8_2:4273590-4273609 | None:intergenic | 60.0% | |
| CTCCCACTCCTCTCCTTCTC+CGG | + | chr8_2:4273589-4273608 | Msa1228780:CDS | 60.0% | |
| !! | GCCGATTTTCTCGCCGGAGA+AGG | - | chr8_2:4273605-4273624 | None:intergenic | 60.0% |
| GCGTGAGGTGGAAGGAGATG+CGG | - | chr8_2:4273650-4273669 | None:intergenic | 60.0% | |
| ! | GAAGGTCGTGGATGATGGCG+CGG | - | chr8_2:4273684-4273703 | None:intergenic | 60.0% |
| AGCGCGTGTTAGGGTGGAAG+CGG | - | chr8_2:4273725-4273744 | None:intergenic | 60.0% | |
| GACTTCAGCGCGTGTTAGGG+TGG | - | chr8_2:4273731-4273750 | None:intergenic | 60.0% | |
| GCGGACTTCAGCGCGTGTTA+GGG | - | chr8_2:4273734-4273753 | None:intergenic | 60.0% | |
| CTAACACGCGCTGAAGTCCG+CGG | + | chr8_2:4273733-4273752 | Msa1228780:CDS | 60.0% | |
| AAAACCGGCCGAGCACGTCA+GGG | + | chr8_2:4273784-4273803 | Msa1228780:CDS | 60.0% | |
| GACTGGAACCCTGACGTGCT+CGG | - | chr8_2:4273795-4273814 | None:intergenic | 60.0% | |
| ! | GGGTCGTAGAGGTGTACGAC+TGG | - | chr8_2:4273812-4273831 | None:intergenic | 60.0% |
| ! | CCCGGCGGTGGTGTGATTTT+TGG | + | chr8_2:4273829-4273848 | Msa1228780:CDS | 60.0% |
| GCTTGCGATTTCGACTGCGG+TGG | + | chr8_2:4273900-4273919 | Msa1228780:CDS | 60.0% | |
| GGCGAGTGCAGCGGTGAATA+CGG | + | chr8_2:4273921-4273940 | Msa1228780:CDS | 60.0% | |
| GAAGGAGAGGAGTGGGAGGG+TGG | - | chr8_2:4273587-4273606 | None:intergenic | 65.0% | |
| CGGAGAAGGAGAGGAGTGGG+AGG | - | chr8_2:4273591-4273610 | None:intergenic | 65.0% | |
| CGCCGGAGAAGGAGAGGAGT+GGG | - | chr8_2:4273594-4273613 | None:intergenic | 65.0% | |
| TCGCCGGAGAAGGAGAGGAG+TGG | - | chr8_2:4273595-4273614 | None:intergenic | 65.0% | |
| ! | GATGATGGCGCGGTGGACGA+CGG | - | chr8_2:4273674-4273693 | None:intergenic | 65.0% |
| CGCGGACTTCAGCGCGTGTT+AGG | - | chr8_2:4273735-4273754 | None:intergenic | 65.0% | |
| ! | AGGGTTTTCGGCCACCACCG+CGG | - | chr8_2:4273753-4273772 | None:intergenic | 65.0% |
| GAAAACCGGCCGAGCACGTC+AGG | + | chr8_2:4273783-4273802 | Msa1228780:CDS | 65.0% | |
| CGTACACCTCTACGACCCGG+CGG | + | chr8_2:4273814-4273833 | Msa1228780:CDS | 65.0% | |
| ACGACGGCGCGTGAGGTGGA+AGG | - | chr8_2:4273658-4273677 | None:intergenic | 70.0% | |
| ! | GGTCGTGGATGATGGCGCGG+TGG | - | chr8_2:4273681-4273700 | None:intergenic | 70.0% |
| ACACGCGCTGAAGTCCGCGG+TGG | + | chr8_2:4273736-4273755 | Msa1228780:CDS | 70.0% | |
| GGAACCCTGACGTGCTCGGC+CGG | - | chr8_2:4273791-4273810 | None:intergenic | 70.0% | |
| ACACCTCTACGACCCGGCGG+TGG | + | chr8_2:4273817-4273836 | Msa1228780:CDS | 70.0% | |
| ACACCACCGCCGGGTCGTAG+AGG | - | chr8_2:4273823-4273842 | None:intergenic | 70.0% | |
| GACTGCGGTGGCGAGTGCAG+CGG | + | chr8_2:4273912-4273931 | Msa1228780:CDS | 70.0% | |
| GTGGACGACGGCGCGTGAGG+TGG | - | chr8_2:4273662-4273681 | None:intergenic | 75.0% | |
| CGCGCTGAAGTCCGCGGTGG+TGG | + | chr8_2:4273739-4273758 | Msa1228780:CDS | 75.0% | |
| ! | GCGGTGGACGACGGCGCGTG+AGG | - | chr8_2:4273665-4273684 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 4273322 | 4275998 | 4273322 | ID=Msa1228780;Name=Msa1228780 |
| chr8_2 | mRNA | 4273322 | 4275998 | 4273322 | ID=Msa1228780-mRNA-1;Parent=Msa1228780;Name=Msa1228780-mRNA-1;_AED=0.35;_eAED=0.35;_QI=99|1|1|1|1|1|2|360|296 |
| chr8_2 | exon | 4273322 | 4274273 | 4273322 | ID=Msa1228780-mRNA-1:exon:1394;Parent=Msa1228780-mRNA-1 |
| chr8_2 | exon | 4275601 | 4275998 | 4275601 | ID=Msa1228780-mRNA-1:exon:1395;Parent=Msa1228780-mRNA-1 |
| chr8_2 | five_prime_UTR | 4273322 | 4273420 | 4273322 | ID=Msa1228780-mRNA-1:five_prime_utr;Parent=Msa1228780-mRNA-1 |
| chr8_2 | CDS | 4273421 | 4274273 | 4273421 | ID=Msa1228780-mRNA-1:cds;Parent=Msa1228780-mRNA-1 |
| chr8_2 | CDS | 4275601 | 4275638 | 4275601 | ID=Msa1228780-mRNA-1:cds;Parent=Msa1228780-mRNA-1 |
| chr8_2 | three_prime_UTR | 4275639 | 4275998 | 4275639 | ID=Msa1228780-mRNA-1:three_prime_utr;Parent=Msa1228780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
