AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474640 MtrunA17_Chr3g0131551 80.093 216 9 1 1 182 7 222 1.25e-123 347
Msa0474640 MtrunA17_Chr3g0131541 61.468 218 42 4 1 182 1 212 9.19e-89 259
Msa0474640 MtrunA17_Chr8g0385631 52.381 189 55 2 1 156 1 187 2.56e-62 192
Msa0474640 MtrunA17_Chr8g0385601 52.356 191 54 4 1 156 1 189 2.90e-61 189
Msa0474640 MtrunA17_Chr8g0385611 44.304 158 54 2 1 125 1 157 1.21e-38 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474640 AT3G23760.1 50.000 184 51 3 12 156 9 190 1.04e-59 185
Msa0474640 AT4G14100.1 48.619 181 56 3 11 156 7 185 3.97e-56 176

Find 61 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTGTTCATGAGGATTT+TGG 0.136762 3_3:+77558096 Msa0474640:CDS
AGTGTTTGTAATTATGAAAA+TGG 0.266071 3_3:+77558158 Msa0474640:exon
GCTCTTGTTCATAAACATTA+AGG 0.279361 3_3:-77557294 None:intergenic
ATAATTTCCTTTGTAATGTT+TGG 0.290309 3_3:+77557552 Msa0474640:CDS
CTTGAGGGCGCTACGTATTT+AGG 0.303379 3_3:+77557515 Msa0474640:CDS
CTTGCATTCAAATATCTTAT+CGG 0.310273 3_3:+77558367 Msa0474640:three_prime_UTR
TCTATTTCTGTTCTGATGAT+AGG 0.311754 3_3:+77558204 Msa0474640:three_prime_UTR
TCCGGCCAAACAGCCGGAAT+TGG 0.340541 3_3:-77557260 None:intergenic
GTAGCGCCCTCAAGAAAATT+AGG 0.340967 3_3:-77557506 None:intergenic
TTATGTAAGGTTTCACATAA+AGG 0.351641 3_3:+77558575 Msa0474640:three_prime_UTR
TATGTAAGGTTTCACATAAA+GGG 0.361091 3_3:+77558576 Msa0474640:three_prime_UTR
AAGAAAGACTAGAGGATGAT+TGG 0.365331 3_3:+77558529 Msa0474640:three_prime_UTR
CTGAGCCAATTCCGGCTGTT+TGG 0.366949 3_3:+77557255 Msa0474640:CDS
GGTTTGTGACTCTCGATATC+AGG 0.371771 3_3:+77558309 Msa0474640:three_prime_UTR
TTCGATGGCTGAGCCAATTC+CGG 0.379483 3_3:+77557247 Msa0474640:CDS
CATACACCTTAACAAAATTC+AGG 0.393845 3_3:+77558463 Msa0474640:three_prime_UTR
GTTAAGTGGTTCTTCTACTC+AGG 0.396357 3_3:+77557626 Msa0474640:CDS
TTGCATTCAAATATCTTATC+GGG 0.409476 3_3:+77558368 Msa0474640:three_prime_UTR
GAGAGAAGAGAATGACATAT+AGG 0.411659 3_3:-77557211 None:intergenic
GAGTAGAAGAACCACTTAAC+AGG 0.415932 3_3:-77557623 None:intergenic
GGAGAATACCTACAGGAAAC+TGG 0.417162 3_3:-77557481 None:intergenic
GCCAATTCCGGCTGTTTGGC+CGG 0.420441 3_3:+77557259 Msa0474640:CDS
CTGCAATAGAACAACTATCT+AGG 0.426683 3_3:+77557183 Msa0474640:CDS
TCCTGCAGAAAGTGGACTTA+TGG 0.436493 3_3:+77557321 Msa0474640:CDS
TGTCATTCTCTTCTCTCTCT+CGG 0.441820 3_3:+77557217 Msa0474640:CDS
GTAATAGAGACACTGGCAAT+AGG 0.467613 3_3:-77558498 None:intergenic
GTCTGATTGAAGCAGTATAT+AGG 0.470699 3_3:-77558051 None:intergenic
CGCTCATGTAATGACGTTTG+AGG 0.471029 3_3:+77557993 Msa0474640:CDS
AACTGCTCCGGCCAAACAGC+CGG 0.482218 3_3:-77557266 None:intergenic
CATCAGAACAGAAATAGAAT+AGG 0.482543 3_3:-77558199 None:intergenic
CATGTAATGACGTTTGAGGT+TGG 0.496845 3_3:+77557997 Msa0474640:CDS
TTGTTCTATTGCAGAGGCCA+TGG 0.498883 3_3:-77557174 None:intergenic
GCTTGAGGAACCGCATTGGC+AGG 0.504494 3_3:+77558026 Msa0474640:CDS
TTTATAAACTGTATATGTTG+TGG 0.507750 3_3:+77558421 Msa0474640:three_prime_UTR
ACCATAAGTCCACTTTCTGC+AGG 0.523892 3_3:-77557322 None:intergenic
GAGCGGAGTCCTGCAGAAAG+TGG 0.548813 3_3:+77557313 Msa0474640:CDS
CACTGCTTGAGGAACCGCAT+TGG 0.549270 3_3:+77558022 Msa0474640:CDS
TCACTCGTAGACCTGTTAAG+TGG 0.552659 3_3:+77557612 Msa0474640:CDS
TCCCTCAGACCGCCATTGCA+AGG 0.555841 3_3:+77557454 Msa0474640:intron
ATTAAGGCATGAAACTGCTC+CGG 0.562441 3_3:-77557278 None:intergenic
AAGACTAGAGGATGATTGGA+AGG 0.569403 3_3:+77558533 Msa0474640:three_prime_UTR
AAGTGGACTTATGGTACGAC+TGG 0.577314 3_3:+77557330 Msa0474640:CDS
TGAGGTTGGAGCACTGCTTG+AGG 0.579016 3_3:+77558011 Msa0474640:CDS
AAAATCCTCATGAACAGTAG+TGG 0.580647 3_3:-77558094 None:intergenic
ACTGGACGACCTTGCAATGG+CGG 0.580698 3_3:-77557463 None:intergenic
TTCATCAGTAATAGAGACAC+TGG 0.583618 3_3:-77558505 None:intergenic
TTATGGTACGACTGGCCTAA+CGG 0.583725 3_3:+77557338 Msa0474640:CDS
TCTCTCGGCTTCATATTCGA+TGG 0.592702 3_3:+77557232 Msa0474640:CDS
CTTTCGTCCAAACATTACAA+AGG 0.600135 3_3:-77557559 None:intergenic
CGCCCTCAAGAAAATTAGGA+CGG 0.606966 3_3:-77557502 None:intergenic
AAGGTCGTCCAGTTTCCTGT+AGG 0.614277 3_3:+77557473 Msa0474640:CDS
ACAAACCATTTAGAAAACAA+TGG 0.616253 3_3:-77558293 None:intergenic
AGATAGTTGTTCTATTGCAG+AGG 0.619269 3_3:-77557180 None:intergenic
AGAATCCACTACTGTTCATG+AGG 0.630604 3_3:+77558089 Msa0474640:CDS
TTAGGACGGAGAATACCTAC+AGG 0.634745 3_3:-77557488 None:intergenic
GAAACTGGACGACCTTGCAA+TGG 0.636092 3_3:-77557466 None:intergenic
CTCAAACGTCATTACATGAG+CGG 0.651282 3_3:-77557992 None:intergenic
TATCAGGACAAGATCAAGAG+TGG 0.655946 3_3:+77558325 Msa0474640:three_prime_UTR
TTAATGTTTATGAACAAGAG+CGG 0.658259 3_3:+77557296 Msa0474640:CDS
TGATGAATAAGAAAGACTAG+AGG 0.673133 3_3:+77558521 Msa0474640:three_prime_UTR
TATATAGGAGCCTGCCAATG+CGG 0.702014 3_3:-77558036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATTAATAAGCTCAAT+CGG - chr3_3:77557861-77557880 None:intergenic 15.0%
!!! ATAGTGATAATTTTAATAGA+TGG + chr3_3:77557961-77557980 Msa0474640:intron 15.0%
!! TAATAATTAATAAGCTCAAT+CGG - chr3_3:77557861-77557880 None:intergenic 15.0%
!!! ATAGTGATAATTTTAATAGA+TGG + chr3_3:77557961-77557980 Msa0474640:intron 15.0%
!! ATAATTTCCTTTGTAATGTT+TGG + chr3_3:77557552-77557571 Msa0474640:CDS 20.0%
!!! TCTCTTATATTATCACTTTT+GGG + chr3_3:77557661-77557680 Msa0474640:intron 20.0%
!! AGTGTTTGTAATTATGAAAA+TGG + chr3_3:77558158-77558177 Msa0474640:exon 20.0%
!! TTTATAAACTGTATATGTTG+TGG + chr3_3:77558421-77558440 Msa0474640:three_prime_UTR 20.0%
!! ATAATTTCCTTTGTAATGTT+TGG + chr3_3:77557552-77557571 Msa0474640:CDS 20.0%
!!! TCTCTTATATTATCACTTTT+GGG + chr3_3:77557661-77557680 Msa0474640:intron 20.0%
!! AGTGTTTGTAATTATGAAAA+TGG + chr3_3:77558158-77558177 Msa0474640:exon 20.0%
!! TTTATAAACTGTATATGTTG+TGG + chr3_3:77558421-77558440 Msa0474640:three_prime_UTR 20.0%
! TTAATGTTTATGAACAAGAG+CGG + chr3_3:77557296-77557315 Msa0474640:CDS 25.0%
!! CTCTCTTATATTATCACTTT+TGG + chr3_3:77557660-77557679 Msa0474640:intron 25.0%
! ATGACAAGATAAGCTTAAAT+AGG - chr3_3:77557702-77557721 None:intergenic 25.0%
!! CTTATCTTGTCATACATTTT+GGG + chr3_3:77557709-77557728 Msa0474640:intron 25.0%
! ATTCACTTCATTCAATATCT+TGG - chr3_3:77557893-77557912 None:intergenic 25.0%
!!! GTGATAATTTTAATAGATGG+AGG + chr3_3:77557964-77557983 Msa0474640:intron 25.0%
!! ATTTTTCTATCAGTCTTCTT+GGG + chr3_3:77558261-77558280 Msa0474640:three_prime_UTR 25.0%
!! ATGAACCATTGTTTTCTAAA+TGG + chr3_3:77558288-77558307 Msa0474640:three_prime_UTR 25.0%
! ACAAACCATTTAGAAAACAA+TGG - chr3_3:77558296-77558315 None:intergenic 25.0%
! CTTGCATTCAAATATCTTAT+CGG + chr3_3:77558367-77558386 Msa0474640:three_prime_UTR 25.0%
! TTGCATTCAAATATCTTATC+GGG + chr3_3:77558368-77558387 Msa0474640:three_prime_UTR 25.0%
! GAAACCTTACATAAAAAGTT+TGG - chr3_3:77558569-77558588 None:intergenic 25.0%
! TTATGTAAGGTTTCACATAA+AGG + chr3_3:77558575-77558594 Msa0474640:three_prime_UTR 25.0%
! TATGTAAGGTTTCACATAAA+GGG + chr3_3:77558576-77558595 Msa0474640:three_prime_UTR 25.0%
! TTAATGTTTATGAACAAGAG+CGG + chr3_3:77557296-77557315 Msa0474640:CDS 25.0%
!! CTCTCTTATATTATCACTTT+TGG + chr3_3:77557660-77557679 Msa0474640:intron 25.0%
! ATGACAAGATAAGCTTAAAT+AGG - chr3_3:77557702-77557721 None:intergenic 25.0%
!! CTTATCTTGTCATACATTTT+GGG + chr3_3:77557709-77557728 Msa0474640:intron 25.0%
! ATTCACTTCATTCAATATCT+TGG - chr3_3:77557893-77557912 None:intergenic 25.0%
!!! GTGATAATTTTAATAGATGG+AGG + chr3_3:77557964-77557983 Msa0474640:intron 25.0%
!! ATTTTTCTATCAGTCTTCTT+GGG + chr3_3:77558261-77558280 Msa0474640:three_prime_UTR 25.0%
!! ATGAACCATTGTTTTCTAAA+TGG + chr3_3:77558288-77558307 Msa0474640:three_prime_UTR 25.0%
! ACAAACCATTTAGAAAACAA+TGG - chr3_3:77558296-77558315 None:intergenic 25.0%
! CTTGCATTCAAATATCTTAT+CGG + chr3_3:77558367-77558386 Msa0474640:three_prime_UTR 25.0%
! TTGCATTCAAATATCTTATC+GGG + chr3_3:77558368-77558387 Msa0474640:three_prime_UTR 25.0%
! GAAACCTTACATAAAAAGTT+TGG - chr3_3:77558569-77558588 None:intergenic 25.0%
! TTATGTAAGGTTTCACATAA+AGG + chr3_3:77558575-77558594 Msa0474640:three_prime_UTR 25.0%
! TATGTAAGGTTTCACATAAA+GGG + chr3_3:77558576-77558595 Msa0474640:three_prime_UTR 25.0%
GCTCTTGTTCATAAACATTA+AGG - chr3_3:77557297-77557316 None:intergenic 30.0%
!! TATCACTTTTGGGCTATATT+TGG + chr3_3:77557671-77557690 Msa0474640:intron 30.0%
! GCTTATCTTGTCATACATTT+TGG + chr3_3:77557708-77557727 Msa0474640:intron 30.0%
CATCAGAACAGAAATAGAAT+AGG - chr3_3:77558202-77558221 None:intergenic 30.0%
!! TCTATTTCTGTTCTGATGAT+AGG + chr3_3:77558204-77558223 Msa0474640:three_prime_UTR 30.0%
GAAGACTGATAGAAAAATGA+TGG - chr3_3:77558259-77558278 None:intergenic 30.0%
! CATTTTTCTATCAGTCTTCT+TGG + chr3_3:77558260-77558279 Msa0474640:three_prime_UTR 30.0%
CATACACCTTAACAAAATTC+AGG + chr3_3:77558463-77558482 Msa0474640:three_prime_UTR 30.0%
TGATGAATAAGAAAGACTAG+AGG + chr3_3:77558521-77558540 Msa0474640:three_prime_UTR 30.0%
! CAAGCCAAACTTTTTATGTA+AGG + chr3_3:77558562-77558581 Msa0474640:three_prime_UTR 30.0%
GCTCTTGTTCATAAACATTA+AGG - chr3_3:77557297-77557316 None:intergenic 30.0%
!! TATCACTTTTGGGCTATATT+TGG + chr3_3:77557671-77557690 Msa0474640:intron 30.0%
! GCTTATCTTGTCATACATTT+TGG + chr3_3:77557708-77557727 Msa0474640:intron 30.0%
CATCAGAACAGAAATAGAAT+AGG - chr3_3:77558202-77558221 None:intergenic 30.0%
!! TCTATTTCTGTTCTGATGAT+AGG + chr3_3:77558204-77558223 Msa0474640:three_prime_UTR 30.0%
GAAGACTGATAGAAAAATGA+TGG - chr3_3:77558259-77558278 None:intergenic 30.0%
! CATTTTTCTATCAGTCTTCT+TGG + chr3_3:77558260-77558279 Msa0474640:three_prime_UTR 30.0%
CATACACCTTAACAAAATTC+AGG + chr3_3:77558463-77558482 Msa0474640:three_prime_UTR 30.0%
TGATGAATAAGAAAGACTAG+AGG + chr3_3:77558521-77558540 Msa0474640:three_prime_UTR 30.0%
! CAAGCCAAACTTTTTATGTA+AGG + chr3_3:77558562-77558581 Msa0474640:three_prime_UTR 30.0%
AGATAGTTGTTCTATTGCAG+AGG - chr3_3:77557183-77557202 None:intergenic 35.0%
CTGCAATAGAACAACTATCT+AGG + chr3_3:77557183-77557202 Msa0474640:CDS 35.0%
GAGAGAAGAGAATGACATAT+AGG - chr3_3:77557214-77557233 None:intergenic 35.0%
ATGTTGAAGTTTCAACCGTT+AGG - chr3_3:77557356-77557375 None:intergenic 35.0%
CTTTCGTCCAAACATTACAA+AGG - chr3_3:77557562-77557581 None:intergenic 35.0%
GTCTGATTGAAGCAGTATAT+AGG - chr3_3:77558054-77558073 None:intergenic 35.0%
AAAATCCTCATGAACAGTAG+TGG - chr3_3:77558097-77558116 None:intergenic 35.0%
! ACTACTGTTCATGAGGATTT+TGG + chr3_3:77558096-77558115 Msa0474640:CDS 35.0%
! CTACTGTTCATGAGGATTTT+GGG + chr3_3:77558097-77558116 Msa0474640:CDS 35.0%
! ACGTTGCCTGAATTTTGTTA+AGG - chr3_3:77558472-77558491 None:intergenic 35.0%
TTCATCAGTAATAGAGACAC+TGG - chr3_3:77558508-77558527 None:intergenic 35.0%
AAGAAAGACTAGAGGATGAT+TGG + chr3_3:77558529-77558548 Msa0474640:three_prime_UTR 35.0%
AGATAGTTGTTCTATTGCAG+AGG - chr3_3:77557183-77557202 None:intergenic 35.0%
CTGCAATAGAACAACTATCT+AGG + chr3_3:77557183-77557202 Msa0474640:CDS 35.0%
GAGAGAAGAGAATGACATAT+AGG - chr3_3:77557214-77557233 None:intergenic 35.0%
ATGTTGAAGTTTCAACCGTT+AGG - chr3_3:77557356-77557375 None:intergenic 35.0%
CTTTCGTCCAAACATTACAA+AGG - chr3_3:77557562-77557581 None:intergenic 35.0%
GTCTGATTGAAGCAGTATAT+AGG - chr3_3:77558054-77558073 None:intergenic 35.0%
AAAATCCTCATGAACAGTAG+TGG - chr3_3:77558097-77558116 None:intergenic 35.0%
! ACTACTGTTCATGAGGATTT+TGG + chr3_3:77558096-77558115 Msa0474640:CDS 35.0%
! CTACTGTTCATGAGGATTTT+GGG + chr3_3:77558097-77558116 Msa0474640:CDS 35.0%
! ACGTTGCCTGAATTTTGTTA+AGG - chr3_3:77558472-77558491 None:intergenic 35.0%
TTCATCAGTAATAGAGACAC+TGG - chr3_3:77558508-77558527 None:intergenic 35.0%
AAGAAAGACTAGAGGATGAT+TGG + chr3_3:77558529-77558548 Msa0474640:three_prime_UTR 35.0%
TGTCATTCTCTTCTCTCTCT+CGG + chr3_3:77557217-77557236 Msa0474640:CDS 40.0%
ATTAAGGCATGAAACTGCTC+CGG - chr3_3:77557281-77557300 None:intergenic 40.0%
!!! CGACAGCATTGAGTTGATTT+TGG - chr3_3:77557382-77557401 None:intergenic 40.0%
! TCTCCGTCCTAATTTTCTTG+AGG + chr3_3:77557499-77557518 Msa0474640:CDS 40.0%
! CTCCGTCCTAATTTTCTTGA+GGG + chr3_3:77557500-77557519 Msa0474640:CDS 40.0%
GAGTAGAAGAACCACTTAAC+AGG - chr3_3:77557626-77557645 None:intergenic 40.0%
GTTAAGTGGTTCTTCTACTC+AGG + chr3_3:77557626-77557645 Msa0474640:CDS 40.0%
CTCAAACGTCATTACATGAG+CGG - chr3_3:77557995-77558014 None:intergenic 40.0%
! CATGTAATGACGTTTGAGGT+TGG + chr3_3:77557997-77558016 Msa0474640:CDS 40.0%
AGAATCCACTACTGTTCATG+AGG + chr3_3:77558089-77558108 Msa0474640:CDS 40.0%
!! GATTTTGGGAGTTTGATGAG+AGG + chr3_3:77558111-77558130 Msa0474640:CDS 40.0%
TATCAGGACAAGATCAAGAG+TGG + chr3_3:77558325-77558344 Msa0474640:three_prime_UTR 40.0%
GTAATAGAGACACTGGCAAT+AGG - chr3_3:77558501-77558520 None:intergenic 40.0%
AAGACTAGAGGATGATTGGA+AGG + chr3_3:77558533-77558552 Msa0474640:three_prime_UTR 40.0%
TGTCATTCTCTTCTCTCTCT+CGG + chr3_3:77557217-77557236 Msa0474640:CDS 40.0%
ATTAAGGCATGAAACTGCTC+CGG - chr3_3:77557281-77557300 None:intergenic 40.0%
!!! CGACAGCATTGAGTTGATTT+TGG - chr3_3:77557382-77557401 None:intergenic 40.0%
! TCTCCGTCCTAATTTTCTTG+AGG + chr3_3:77557499-77557518 Msa0474640:CDS 40.0%
! CTCCGTCCTAATTTTCTTGA+GGG + chr3_3:77557500-77557519 Msa0474640:CDS 40.0%
GAGTAGAAGAACCACTTAAC+AGG - chr3_3:77557626-77557645 None:intergenic 40.0%
GTTAAGTGGTTCTTCTACTC+AGG + chr3_3:77557626-77557645 Msa0474640:CDS 40.0%
CTCAAACGTCATTACATGAG+CGG - chr3_3:77557995-77558014 None:intergenic 40.0%
! CATGTAATGACGTTTGAGGT+TGG + chr3_3:77557997-77558016 Msa0474640:CDS 40.0%
AGAATCCACTACTGTTCATG+AGG + chr3_3:77558089-77558108 Msa0474640:CDS 40.0%
!! GATTTTGGGAGTTTGATGAG+AGG + chr3_3:77558111-77558130 Msa0474640:CDS 40.0%
TATCAGGACAAGATCAAGAG+TGG + chr3_3:77558325-77558344 Msa0474640:three_prime_UTR 40.0%
GTAATAGAGACACTGGCAAT+AGG - chr3_3:77558501-77558520 None:intergenic 40.0%
AAGACTAGAGGATGATTGGA+AGG + chr3_3:77558533-77558552 Msa0474640:three_prime_UTR 40.0%
TCTCTCGGCTTCATATTCGA+TGG + chr3_3:77557232-77557251 Msa0474640:CDS 45.0%
! TCCTGCAGAAAGTGGACTTA+TGG + chr3_3:77557321-77557340 Msa0474640:CDS 45.0%
ACCATAAGTCCACTTTCTGC+AGG - chr3_3:77557325-77557344 None:intergenic 45.0%
! AAGTGGACTTATGGTACGAC+TGG + chr3_3:77557330-77557349 Msa0474640:CDS 45.0%
!! TTATGGTACGACTGGCCTAA+CGG + chr3_3:77557338-77557357 Msa0474640:CDS 45.0%
! ATGGAGAGTGTAGATGAAGG+AGG - chr3_3:77557435-77557454 None:intergenic 45.0%
GGAGAATACCTACAGGAAAC+TGG - chr3_3:77557484-77557503 None:intergenic 45.0%
TTAGGACGGAGAATACCTAC+AGG - chr3_3:77557491-77557510 None:intergenic 45.0%
CGCCCTCAAGAAAATTAGGA+CGG - chr3_3:77557505-77557524 None:intergenic 45.0%
GTAGCGCCCTCAAGAAAATT+AGG - chr3_3:77557509-77557528 None:intergenic 45.0%
TCACTCGTAGACCTGTTAAG+TGG + chr3_3:77557612-77557631 Msa0474640:CDS 45.0%
GTGGTTCTTCTACTCAGGTT+TGG + chr3_3:77557631-77557650 Msa0474640:intron 45.0%
CGCTCATGTAATGACGTTTG+AGG + chr3_3:77557993-77558012 Msa0474640:CDS 45.0%
TATATAGGAGCCTGCCAATG+CGG - chr3_3:77558039-77558058 None:intergenic 45.0%
GGTTTGTGACTCTCGATATC+AGG + chr3_3:77558309-77558328 Msa0474640:three_prime_UTR 45.0%
TCTCTCGGCTTCATATTCGA+TGG + chr3_3:77557232-77557251 Msa0474640:CDS 45.0%
! TCCTGCAGAAAGTGGACTTA+TGG + chr3_3:77557321-77557340 Msa0474640:CDS 45.0%
ACCATAAGTCCACTTTCTGC+AGG - chr3_3:77557325-77557344 None:intergenic 45.0%
! AAGTGGACTTATGGTACGAC+TGG + chr3_3:77557330-77557349 Msa0474640:CDS 45.0%
!! TTATGGTACGACTGGCCTAA+CGG + chr3_3:77557338-77557357 Msa0474640:CDS 45.0%
! ATGGAGAGTGTAGATGAAGG+AGG - chr3_3:77557435-77557454 None:intergenic 45.0%
GGAGAATACCTACAGGAAAC+TGG - chr3_3:77557484-77557503 None:intergenic 45.0%
TTAGGACGGAGAATACCTAC+AGG - chr3_3:77557491-77557510 None:intergenic 45.0%
CGCCCTCAAGAAAATTAGGA+CGG - chr3_3:77557505-77557524 None:intergenic 45.0%
GTAGCGCCCTCAAGAAAATT+AGG - chr3_3:77557509-77557528 None:intergenic 45.0%
TCACTCGTAGACCTGTTAAG+TGG + chr3_3:77557612-77557631 Msa0474640:CDS 45.0%
GTGGTTCTTCTACTCAGGTT+TGG + chr3_3:77557631-77557650 Msa0474640:intron 45.0%
CGCTCATGTAATGACGTTTG+AGG + chr3_3:77557993-77558012 Msa0474640:CDS 45.0%
TATATAGGAGCCTGCCAATG+CGG - chr3_3:77558039-77558058 None:intergenic 45.0%
GGTTTGTGACTCTCGATATC+AGG + chr3_3:77558309-77558328 Msa0474640:three_prime_UTR 45.0%
TTCGATGGCTGAGCCAATTC+CGG + chr3_3:77557247-77557266 Msa0474640:CDS 50.0%
TCGTCGTTTACGACCTCGAA+TGG + chr3_3:77557399-77557418 Msa0474640:intron 50.0%
TACGACCTCGAATGGACCAA+CGG + chr3_3:77557407-77557426 Msa0474640:intron 50.0%
!! GTAGATGAAGGAGGTACCGT+TGG - chr3_3:77557426-77557445 None:intergenic 50.0%
! GGGATGGAGAGTGTAGATGA+AGG - chr3_3:77557438-77557457 None:intergenic 50.0%
GAAACTGGACGACCTTGCAA+TGG - chr3_3:77557469-77557488 None:intergenic 50.0%
AAGGTCGTCCAGTTTCCTGT+AGG + chr3_3:77557473-77557492 Msa0474640:CDS 50.0%
!! CTTGAGGGCGCTACGTATTT+AGG + chr3_3:77557515-77557534 Msa0474640:CDS 50.0%
TTCGATGGCTGAGCCAATTC+CGG + chr3_3:77557247-77557266 Msa0474640:CDS 50.0%
TCGTCGTTTACGACCTCGAA+TGG + chr3_3:77557399-77557418 Msa0474640:intron 50.0%
TACGACCTCGAATGGACCAA+CGG + chr3_3:77557407-77557426 Msa0474640:intron 50.0%
!! GTAGATGAAGGAGGTACCGT+TGG - chr3_3:77557426-77557445 None:intergenic 50.0%
! GGGATGGAGAGTGTAGATGA+AGG - chr3_3:77557438-77557457 None:intergenic 50.0%
GAAACTGGACGACCTTGCAA+TGG - chr3_3:77557469-77557488 None:intergenic 50.0%
AAGGTCGTCCAGTTTCCTGT+AGG + chr3_3:77557473-77557492 Msa0474640:CDS 50.0%
!! CTTGAGGGCGCTACGTATTT+AGG + chr3_3:77557515-77557534 Msa0474640:CDS 50.0%
CTGAGCCAATTCCGGCTGTT+TGG + chr3_3:77557255-77557274 Msa0474640:CDS 55.0%
! AGGTACCGTTGGTCCATTCG+AGG - chr3_3:77557415-77557434 None:intergenic 55.0%
ACCTTGCAATGGCGGTCTGA+GGG - chr3_3:77557458-77557477 None:intergenic 55.0%
ACTGGACGACCTTGCAATGG+CGG - chr3_3:77557466-77557485 None:intergenic 55.0%
!! TGAGGTTGGAGCACTGCTTG+AGG + chr3_3:77558011-77558030 Msa0474640:CDS 55.0%
CACTGCTTGAGGAACCGCAT+TGG + chr3_3:77558022-77558041 Msa0474640:CDS 55.0%
CTGAGCCAATTCCGGCTGTT+TGG + chr3_3:77557255-77557274 Msa0474640:CDS 55.0%
! AGGTACCGTTGGTCCATTCG+AGG - chr3_3:77557415-77557434 None:intergenic 55.0%
ACCTTGCAATGGCGGTCTGA+GGG - chr3_3:77557458-77557477 None:intergenic 55.0%
ACTGGACGACCTTGCAATGG+CGG - chr3_3:77557466-77557485 None:intergenic 55.0%
!! TGAGGTTGGAGCACTGCTTG+AGG + chr3_3:77558011-77558030 Msa0474640:CDS 55.0%
CACTGCTTGAGGAACCGCAT+TGG + chr3_3:77558022-77558041 Msa0474640:CDS 55.0%
GCCAATTCCGGCTGTTTGGC+CGG + chr3_3:77557259-77557278 Msa0474640:CDS 60.0%
TCCGGCCAAACAGCCGGAAT+TGG - chr3_3:77557263-77557282 None:intergenic 60.0%
AACTGCTCCGGCCAAACAGC+CGG - chr3_3:77557269-77557288 None:intergenic 60.0%
GAGCGGAGTCCTGCAGAAAG+TGG + chr3_3:77557313-77557332 Msa0474640:CDS 60.0%
TGCAATGGCGGTCTGAGGGA+TGG - chr3_3:77557454-77557473 None:intergenic 60.0%
TCCCTCAGACCGCCATTGCA+AGG + chr3_3:77557454-77557473 Msa0474640:intron 60.0%
GACCTTGCAATGGCGGTCTG+AGG - chr3_3:77557459-77557478 None:intergenic 60.0%
! GCTTGAGGAACCGCATTGGC+AGG + chr3_3:77558026-77558045 Msa0474640:CDS 60.0%
GCCAATTCCGGCTGTTTGGC+CGG + chr3_3:77557259-77557278 Msa0474640:CDS 60.0%
TCCGGCCAAACAGCCGGAAT+TGG - chr3_3:77557263-77557282 None:intergenic 60.0%
AACTGCTCCGGCCAAACAGC+CGG - chr3_3:77557269-77557288 None:intergenic 60.0%
GAGCGGAGTCCTGCAGAAAG+TGG + chr3_3:77557313-77557332 Msa0474640:CDS 60.0%
TGCAATGGCGGTCTGAGGGA+TGG - chr3_3:77557454-77557473 None:intergenic 60.0%
TCCCTCAGACCGCCATTGCA+AGG + chr3_3:77557454-77557473 Msa0474640:intron 60.0%
GACCTTGCAATGGCGGTCTG+AGG - chr3_3:77557459-77557478 None:intergenic 60.0%
! GCTTGAGGAACCGCATTGGC+AGG + chr3_3:77558026-77558045 Msa0474640:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 77557176 77558603 77557176 ID=Msa0474640;Name=Msa0474640
chr3_3 mRNA 77557176 77558603 77557176 ID=Msa0474640-mRNA-1;Parent=Msa0474640;Name=Msa0474640-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.5|0.33|1|1|1|3|445|182
chr3_3 exon 77557176 77557359 77557176 ID=Msa0474640-mRNA-1:exon:20760;Parent=Msa0474640-mRNA-1
chr3_3 exon 77557462 77557647 77557462 ID=Msa0474640-mRNA-1:exon:20761;Parent=Msa0474640-mRNA-1
chr3_3 exon 77557980 77558603 77557980 ID=Msa0474640-mRNA-1:exon:20762;Parent=Msa0474640-mRNA-1
chr3_3 CDS 77557176 77557359 77557176 ID=Msa0474640-mRNA-1:cds;Parent=Msa0474640-mRNA-1
chr3_3 CDS 77557462 77557647 77557462 ID=Msa0474640-mRNA-1:cds;Parent=Msa0474640-mRNA-1
chr3_3 CDS 77557980 77558158 77557980 ID=Msa0474640-mRNA-1:cds;Parent=Msa0474640-mRNA-1
chr3_3 three_prime_UTR 77558159 77558603 77558159 ID=Msa0474640-mRNA-1:three_prime_utr;Parent=Msa0474640-mRNA-1
Gene Sequence

>Msa0474640

ATGGCCTCTGCAATAGAACAACTATCTAGGATATTCCTATATGTCATTCTCTTCTCTCTCTCGGCTTCATATTCGATGGCTGAGCCAATTCCGGCTGTTTGGCCGGAGCAGTTTCATGCCTTAATGTTTATGAACAAGAGCGGAGTCCTGCAGAAAGTGGACTTATGGTACGACTGGCCTAACGACCGCCATTGCAAGGTCGTCCAGTTTCCTGTAGGTATTCTCCGTCCTAATTTTCTTGAGGGCGCTACGTATTTAGGTCAAGAACATGTTGATAATTTCCTTTGTAATGTTTGGACGAAAGTTGATTTCATTGTGTACTATGAAGATGTTCTCACTCGTAGACCTGTTAAGTGGTTCTTCTACTCAGATGGAGGATATACCGCTCATGTAATGACGTTTGAGGTTGGAGCACTGCTTGAGGAACCGCATTGGCAGGCTCCTATATACTGCTTCAATCAGACTGAGATAATAATAATAGAATCCACTACTGTTCATGAGGATTTTGGGAGTTTGATGAGAGGCAAAGTTGATGCTGCTGCTGCATAA

Protein sequence

>Msa0474640

MASAIEQLSRIFLYVILFSLSASYSMAEPIPAVWPEQFHALMFMNKSGVLQKVDLWYDWPNDRHCKVVQFPVGILRPNFLEGATYLGQEHVDNFLCNVWTKVDFIVYYEDVLTRRPVKWFFYSDGGYTAHVMTFEVGALLEEPHWQAPIYCFNQTEIIIIESTTVHEDFGSLMRGKVDAAAA*