AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0464730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464730 MtrunA17_Chr3g0116461 99.071 323 3 0 1 323 1 323 0.0 659
Msa0464730 MtrunA17_Chr8g0381911 41.202 233 119 5 82 297 65 296 1.85e-54 180
Msa0464730 MtrunA17_Chr2g0291931 34.868 152 90 5 82 227 74 222 1.93e-20 90.9
Msa0464730 MtrunA17_Chr7g0271811 28.671 286 175 9 1 282 1 261 1.39e-13 71.6
Msa0464730 MtrunA17_Chr4g0048231 32.609 138 92 1 182 319 93 229 1.36e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0464730 AT3G48420.1 81.588 277 47 2 50 323 44 319 6.33e-160 449
Msa0464730 AT4G39970.1 38.431 255 140 6 58 297 42 294 9.74e-51 171
Msa0464730 AT5G45170.2 30.380 237 148 10 10 233 1 233 1.45e-18 85.5
Msa0464730 AT5G45170.1 30.380 237 148 10 10 233 1 233 1.72e-18 85.5
Msa0464730 AT1G56500.2 29.675 246 129 8 55 282 43 262 2.02e-13 71.6
Msa0464730 AT1G56500.1 32.843 204 119 7 81 282 75 262 2.31e-13 71.2
Msa0464730 AT4G21470.1 29.661 236 140 9 79 310 10 223 6.88e-12 66.2

Find 81 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTTCTTGTTGTGTTTA+AGG 0.108233 3_3:+64885258 None:intergenic
TACGGTGAGTTGCTTAAAAT+TGG 0.209701 3_3:-64884604 Msa0464730:CDS
TCCTTTCTTGTTCACCTGTC+GGG 0.284815 3_3:+64884448 None:intergenic
CCACGTCTCCTGCAAATATC+TGG 0.290444 3_3:+64883603 None:intergenic
TGCAATAGTATCATGTTTAC+TGG 0.316202 3_3:-64883648 Msa0464730:CDS
TCCTGAGGAGAGATTTGATT+TGG 0.337964 3_3:-64882766 Msa0464730:CDS
GCAACTCAACCTACGCCTTC+TGG 0.363138 3_3:+64885169 None:intergenic
TCAATTCCTCATTTGTTGTC+AGG 0.365784 3_3:-64882649 Msa0464730:three_prime_UTR
CAACAATGAAGCAGAGGAAA+TGG 0.387924 3_3:+64885322 None:intergenic
AACATACAGGCTTGTCGATC+AGG 0.394903 3_3:-64883922 Msa0464730:intron
TTAACATCAAGTCTTTAGAT+TGG 0.401795 3_3:-64882454 Msa0464730:three_prime_UTR
GCGAAAGACAGAACTATTCA+TGG 0.402161 3_3:-64884400 Msa0464730:CDS
GATGCTGTATTTGACTTCAT+TGG 0.403312 3_3:-64882795 Msa0464730:CDS
TTCCTTTCTTGTTCACCTGT+CGG 0.403845 3_3:+64884447 None:intergenic
CAATATGTCAGCTAGCAAAC+TGG 0.412540 3_3:-64882717 Msa0464730:exon
AAGTGTGTGTGATGATGATT+TGG 0.419141 3_3:-64885398 Msa0464730:five_prime_UTR
TATGCATACCGCCTTCTCAT+TGG 0.423723 3_3:+64883860 None:intergenic
TAACATCAAGTCTTTAGATT+GGG 0.424733 3_3:-64882453 Msa0464730:three_prime_UTR
CTCTCGGTGTTGAACCTTCA+AGG 0.431443 3_3:-64883388 Msa0464730:intron
GAGGAAAATCTTACTGGATC+AGG 0.443590 3_3:+64883566 None:intergenic
CTAGCAGCAGCTAAAGCAGC+TGG 0.444999 3_3:-64883039 Msa0464730:CDS
GTGGTCGAGGACAGTGCAAT+AGG 0.458037 3_3:-64883063 Msa0464730:CDS
GAGTTGCTCAGCCTCGGCTT+CGG 0.462076 3_3:-64885153 Msa0464730:CDS
AAGAGCTTTGACAGTGAAAG+AGG 0.462364 3_3:+64885211 None:intergenic
TGAATTGTGCAGAAAGAACT+AGG 0.469246 3_3:-64884649 Msa0464730:intron
AGAAAGAACTAGGCGTTACA+TGG 0.472435 3_3:-64884639 Msa0464730:CDS
TCACCTGTCGGGGCATTCGC+AGG 0.476166 3_3:+64884459 None:intergenic
TAGGTTGAGTTGCTCAGCCT+CGG 0.485144 3_3:-64885159 Msa0464730:CDS
CCCCGACAGGTGAACAAGAA+AGG 0.485593 3_3:-64884449 Msa0464730:CDS
GCTTGCAGCTAGTATATAGA+TGG 0.488092 3_3:+64883412 None:intergenic
TTTATAGCGGTTGTGTAAAG+AGG 0.488635 3_3:-64882591 Msa0464730:three_prime_UTR
GCCAAATCAAATCTCTCCTC+AGG 0.492266 3_3:+64882765 None:intergenic
CCTTTCTTGTTCACCTGTCG+GGG 0.500466 3_3:+64884449 None:intergenic
ACTATTATGAGATACCTTGA+AGG 0.500652 3_3:+64883374 None:intergenic
ACATGGGACGTGGAATTGTA+CGG 0.502947 3_3:-64884622 Msa0464730:CDS
GTAACCAACTTTGCAACACC+TGG 0.507072 3_3:+64884345 None:intergenic
CCTTCTTGTTGTGTTTAAGG+AGG 0.516074 3_3:+64885261 None:intergenic
TTACAGATGTGTCGTGGTCG+AGG 0.524433 3_3:-64883076 Msa0464730:intron
TGGCCTGCGAATGCCCCGAC+AGG 0.524846 3_3:-64884462 Msa0464730:CDS
GTCGATCAGGCTTTAACTCA+AGG 0.530696 3_3:-64883909 Msa0464730:CDS
GGTGAGTTGCTTAAAATTGG+AGG 0.532628 3_3:-64884601 Msa0464730:CDS
TGACATATTGCTTCTCAAGA+AGG 0.536995 3_3:+64882730 None:intergenic
ATACTAGCTGCAAGCACTCT+CGG 0.540283 3_3:-64883404 Msa0464730:CDS
AAACTGTTGCCTCTTCGCCC+AGG 0.546839 3_3:-64884363 Msa0464730:CDS
ACGGCGTACTTTAACAAGAC+AGG 0.551081 3_3:-64884486 Msa0464730:CDS
TGATGATGATTTGGTTTGCA+AGG 0.551348 3_3:-64885389 Msa0464730:five_prime_UTR
AAAGACTTGATGTTAAAACT+TGG 0.553281 3_3:+64882461 None:intergenic
TGGTTTGCAAGGAAAAGCTA+AGG 0.555137 3_3:-64885378 Msa0464730:five_prime_UTR
AAAAGCTAAGGCAATGGCCA+TGG 0.562011 3_3:-64885366 Msa0464730:exon
TTGCAGCACTTCCAATGAGA+AGG 0.567771 3_3:-64883871 Msa0464730:CDS
GAGTTGCTTAAAATTGGAGG+TGG 0.568390 3_3:-64884598 Msa0464730:CDS
AATTAACGGTCCCACTCCAT+AGG 0.577424 3_3:-64885443 None:intergenic
TAAAAGATCAATGTTTATAG+CGG 0.578210 3_3:-64882604 Msa0464730:three_prime_UTR
AAGAAGAGCTGAGGGAAGCG+TGG 0.578519 3_3:+64885124 None:intergenic
AGTGTATAGTAACAAAGAGC+GGG 0.580787 3_3:-64883011 Msa0464730:intron
CCAGATATTTGCAGGAGACG+TGG 0.583159 3_3:-64883603 Msa0464730:CDS
CGTGGAAGATGCCGAAGCCG+AGG 0.587987 3_3:+64885142 None:intergenic
TAGCAGCAGCTAAAGCAGCT+GGG 0.588153 3_3:-64883038 Msa0464730:CDS
GCAATAGTATCATGTTTACT+GGG 0.601679 3_3:-64883647 Msa0464730:CDS
CCTCCTTAAACACAACAAGA+AGG 0.603904 3_3:-64885261 Msa0464730:CDS
TTTGCAACACCTGGGCGAAG+AGG 0.605369 3_3:+64884354 None:intergenic
AAATTGGAGGTGGAAAAGAA+AGG 0.610712 3_3:-64884588 Msa0464730:intron
TTTCAATGATACTTTCCAAG+AGG 0.616411 3_3:-64885048 Msa0464730:intron
TGTTATTTACAGATGTGTCG+TGG 0.617481 3_3:-64883082 Msa0464730:intron
GCTTTGACAGTGAAAGAGGA+TGG 0.619633 3_3:+64885215 None:intergenic
CTTCATTGGTGATCCTCCTG+AGG 0.623430 3_3:-64882781 Msa0464730:CDS
TCGATTCAACAATGAAGCAG+AGG 0.624993 3_3:+64885316 None:intergenic
TATGCTATTTGCTGATGCCA+TGG 0.626029 3_3:+64885349 None:intergenic
GCAAGGAAAAGCTAAGGCAA+TGG 0.626356 3_3:-64885372 Msa0464730:exon
AAATCAAATCTCTCCTCAGG+AGG 0.626804 3_3:+64882768 None:intergenic
AAGTGTATAGTAACAAAGAG+CGG 0.628437 3_3:-64883012 Msa0464730:CDS
GGTAAGCCTGACAACAAATG+AGG 0.628590 3_3:+64882643 None:intergenic
CGTACTTTAACAAGACAGGT+TGG 0.629835 3_3:-64884482 Msa0464730:CDS
ACTAGGCGTTACATGGGACG+TGG 0.635683 3_3:-64884632 Msa0464730:CDS
TAACCAACTTTGCAACACCT+GGG 0.652911 3_3:+64884346 None:intergenic
GAAAGAACTAGGCGTTACAT+GGG 0.654542 3_3:-64884638 Msa0464730:CDS
TATCATTGAAAGAAATGCGG+TGG 0.657910 3_3:+64885060 None:intergenic
CAGCACTTCCAATGAGAAGG+CGG 0.658354 3_3:-64883868 Msa0464730:intron
TATCAACTTCAACAACCAGA+AGG 0.668672 3_3:-64885184 Msa0464730:CDS
CTTCAACAACCAGAAGGCGT+AGG 0.675480 3_3:-64885178 Msa0464730:CDS
AAGTATCATTGAAAGAAATG+CGG 0.694645 3_3:+64885057 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAAATATTACTTTTTATTA+TGG - chr3_3:64882888-64882907 Msa0464730:intron 10.0%
!! AAAACTCATAAAAATGAATT+TGG + chr3_3:64883585-64883604 None:intergenic 15.0%
!!! CTAATTTTCATTATTGAATA+TGG - chr3_3:64883666-64883685 Msa0464730:intron 15.0%
!!! GTATATTTCTATTTACTAAA+TGG - chr3_3:64884890-64884909 Msa0464730:intron 15.0%
!!! TCTATGTAATTTTTTTTCAT+AGG - chr3_3:64884921-64884940 Msa0464730:intron 15.0%
!!! TTTTAATCATTGACTTAAAA+GGG + chr3_3:64885260-64885279 None:intergenic 15.0%
!!! TTTTTATTTATAAGAGATTG+AGG + chr3_3:64885390-64885409 None:intergenic 15.0%
!!! AAACAATATTAGCCTATTAA+GGG + chr3_3:64883807-64883826 None:intergenic 20.0%
!!! TAAACAATATTAGCCTATTA+AGG + chr3_3:64883808-64883827 None:intergenic 20.0%
!! TAGTTGGAAAAATTCATTTA+AGG + chr3_3:64884061-64884080 None:intergenic 20.0%
!! TTTATTCATAACTGCAATAT+CGG - chr3_3:64884150-64884169 Msa0464730:intron 20.0%
!! TTAACTGTAGTATGTAAAAT+GGG + chr3_3:64884393-64884412 None:intergenic 20.0%
!! TTTAACTGTAGTATGTAAAA+TGG + chr3_3:64884394-64884413 None:intergenic 20.0%
!!! TACAACATTTGATTTTATGA+TGG + chr3_3:64884647-64884666 None:intergenic 20.0%
!!! AATAACTTGCTCTAAAATTT+TGG + chr3_3:64884715-64884734 None:intergenic 20.0%
!!! TTATTTGTTTTTGAACTGTA+TGG - chr3_3:64884747-64884766 Msa0464730:intron 20.0%
!!! CTTTTAATCATTGACTTAAA+AGG + chr3_3:64885261-64885280 None:intergenic 20.0%
!! TAAAAGATCAATGTTTATAG+CGG - chr3_3:64885275-64885294 Msa0464730:CDS 20.0%
!!! TGACATTTTTAATCATCAAA+GGG + chr3_3:64885364-64885383 None:intergenic 20.0%
! AAGTATCATTGAAAGAAATG+CGG + chr3_3:64882825-64882844 None:intergenic 25.0%
! AAGAAAGATTAAAAAGCAGA+AGG + chr3_3:64882859-64882878 None:intergenic 25.0%
! AACATTAATAATTGTTTCCG+AGG + chr3_3:64883143-64883162 None:intergenic 25.0%
!!! ATAATTGATGCGTTTTTTGT+AGG - chr3_3:64883367-64883386 Msa0464730:intron 25.0%
! TAAATTACCTACTAAGTAGT+TGG - chr3_3:64883761-64883780 Msa0464730:intron 25.0%
! TTATAAACCAACTACTTAGT+AGG + chr3_3:64883771-64883790 None:intergenic 25.0%
! TTTCCAACTATAGAGAAAAA+TGG - chr3_3:64884071-64884090 Msa0464730:intron 25.0%
! ATTTATTTGTATTCCATCTC+AGG - chr3_3:64884179-64884198 Msa0464730:intron 25.0%
! AAAAAATTAGCATTGCAATG+AGG + chr3_3:64884335-64884354 None:intergenic 25.0%
!!! TGCTAATTTTTTAGACTTTC+AGG - chr3_3:64884343-64884362 Msa0464730:intron 25.0%
! TACATACTACAGTTAAACAA+TGG - chr3_3:64884397-64884416 Msa0464730:CDS 25.0%
! CTTTAAATTACACAAGACAT+TGG - chr3_3:64884582-64884601 Msa0464730:intron 25.0%
!!! GATTTTATGATGGATACATT+TGG + chr3_3:64884637-64884656 None:intergenic 25.0%
!!! TTAGTGGTTATGTTAGTTTT+TGG - chr3_3:64884960-64884979 Msa0464730:intron 25.0%
!!! TAGTGGTTATGTTAGTTTTT+GGG - chr3_3:64884961-64884980 Msa0464730:intron 25.0%
!! CTGACATTTTTAATCATCAA+AGG + chr3_3:64885365-64885384 None:intergenic 25.0%
! AAAGACTTGATGTTAAAACT+TGG + chr3_3:64885421-64885440 None:intergenic 25.0%
! TTAACATCAAGTCTTTAGAT+TGG - chr3_3:64885425-64885444 Msa0464730:five_prime_UTR 25.0%
! TAACATCAAGTCTTTAGATT+GGG - chr3_3:64885426-64885445 Msa0464730:five_prime_UTR 25.0%
!!! CTAGTAAGTGTTGTTGTTTT+TGG + chr3_3:64882598-64882617 None:intergenic 30.0%
TTTCAATGATACTTTCCAAG+AGG - chr3_3:64882831-64882850 Msa0464730:intron 30.0%
CACTAGTTAGTTGTTCTAAT+CGG + chr3_3:64883033-64883052 None:intergenic 30.0%
TACATCTAACGTTAGTAATC+AGG - chr3_3:64883064-64883083 Msa0464730:CDS 30.0%
TGAAAACTCAAGCTATTAAG+TGG + chr3_3:64883643-64883662 None:intergenic 30.0%
! AGTAGTTGGTTTATAACATG+TGG - chr3_3:64883775-64883794 Msa0464730:intron 30.0%
ATGTGGAAATATCCCTTAAT+AGG - chr3_3:64883792-64883811 Msa0464730:intron 30.0%
TTTCTGTCTATCAAACATAC+AGG - chr3_3:64883944-64883963 Msa0464730:intron 30.0%
TCAACAAACAGGTAACTAAT+AGG + chr3_3:64884117-64884136 None:intergenic 30.0%
TGCAATAGTATCATGTTTAC+TGG - chr3_3:64884231-64884250 Msa0464730:intron 30.0%
GCAATAGTATCATGTTTACT+GGG - chr3_3:64884232-64884251 Msa0464730:intron 30.0%
CACAAAGAGAATAACACAAT+TGG + chr3_3:64884442-64884461 None:intergenic 30.0%
ACTATTATGAGATACCTTGA+AGG + chr3_3:64884508-64884527 None:intergenic 30.0%
CAAGACATTGGAAAAGTTAA+TGG - chr3_3:64884594-64884613 Msa0464730:CDS 30.0%
AAGTGTATAGTAACAAAGAG+CGG - chr3_3:64884867-64884886 Msa0464730:intron 30.0%
!!! TTAGTTTTTGGGATCGAATT+TGG - chr3_3:64884972-64884991 Msa0464730:intron 30.0%
!!! TAGTTTTTGGGATCGAATTT+GGG - chr3_3:64884973-64884992 Msa0464730:intron 30.0%
CAAGAATGAAATCACATTGA+AGG + chr3_3:64885013-64885032 None:intergenic 30.0%
!!! AGATTTGATTTGGCATTTTG+TGG - chr3_3:64885123-64885142 Msa0464730:CDS 30.0%
!! CTACTTATCTGCTTTTCCTA+TGG + chr3_3:64882455-64882474 None:intergenic 35.0%
! AAGTGTGTGTGATGATGATT+TGG - chr3_3:64882481-64882500 Msa0464730:three_prime_UTR 35.0%
!! TGATGATGATTTGGTTTGCA+AGG - chr3_3:64882490-64882509 Msa0464730:three_prime_UTR 35.0%
! GATCCTTCTTGTTGTGTTTA+AGG + chr3_3:64882624-64882643 None:intergenic 35.0%
TATCAACTTCAACAACCAGA+AGG - chr3_3:64882695-64882714 Msa0464730:intron 35.0%
!!! CATCTTTTTCAGTGTCAACA+AGG + chr3_3:64882798-64882817 None:intergenic 35.0%
CTTGTTGACACTGAAAAAGA+TGG - chr3_3:64882796-64882815 Msa0464730:CDS 35.0%
TATCATTGAAAGAAATGCGG+TGG + chr3_3:64882822-64882841 None:intergenic 35.0%
!! GATGAAGACATTCTAGTTCT+AGG + chr3_3:64883097-64883116 None:intergenic 35.0%
TGAATTGTGCAGAAAGAACT+AGG - chr3_3:64883230-64883249 Msa0464730:intron 35.0%
TACGGTGAGTTGCTTAAAAT+TGG - chr3_3:64883275-64883294 Msa0464730:intron 35.0%
AAATTGGAGGTGGAAAAGAA+AGG - chr3_3:64883291-64883310 Msa0464730:intron 35.0%
!!! ATGCGTTTTTTGTAGGATGA+CGG - chr3_3:64883374-64883393 Msa0464730:intron 35.0%
AATATGGTTTCGAAACAGCT+AGG - chr3_3:64883682-64883701 Msa0464730:intron 35.0%
ATATGGTTTCGAAACAGCTA+GGG - chr3_3:64883683-64883702 Msa0464730:intron 35.0%
!!! GAGCCATTTTTCTCTATAGT+TGG + chr3_3:64884077-64884096 None:intergenic 35.0%
CTGAAATCAACTCATGACTT+AGG + chr3_3:64884206-64884225 None:intergenic 35.0%
!! CTAAGTCATGAGTTGATTTC+AGG - chr3_3:64884204-64884223 Msa0464730:intron 35.0%
GCAAAAATCCAGATATTTGC+AGG - chr3_3:64884268-64884287 Msa0464730:intron 35.0%
!!! TTACTGGATCAGGCTTTTTT+CGG + chr3_3:64884306-64884325 None:intergenic 35.0%
TGCAATGAGGAAAATCTTAC+TGG + chr3_3:64884322-64884341 None:intergenic 35.0%
AATTGGCCACATGGTAAAAA+AGG + chr3_3:64884425-64884444 None:intergenic 35.0%
! TGTGTTATTCTCTTTGTGAC+AGG - chr3_3:64884444-64884463 Msa0464730:CDS 35.0%
TCATATGCCTAACTAGTACA+TGG - chr3_3:64884527-64884546 Msa0464730:intron 35.0%
TAGTACTCCATGTACTAGTT+AGG + chr3_3:64884537-64884556 None:intergenic 35.0%
! TGTTATTTACAGATGTGTCG+TGG - chr3_3:64884797-64884816 Msa0464730:intron 35.0%
AGTGTATAGTAACAAAGAGC+GGG - chr3_3:64884868-64884887 Msa0464730:intron 35.0%
CAGAGATGATAGTAAGTTAG+TGG - chr3_3:64884944-64884963 Msa0464730:intron 35.0%
TGATCTCAAATGTATCATGC+AGG - chr3_3:64885031-64885050 Msa0464730:intron 35.0%
! GATGCTGTATTTGACTTCAT+TGG - chr3_3:64885084-64885103 Msa0464730:CDS 35.0%
TGACATATTGCTTCTCAAGA+AGG + chr3_3:64885152-64885171 None:intergenic 35.0%
!! AGCACTGATAGAAATAGTGA+AGG + chr3_3:64885211-64885230 None:intergenic 35.0%
!! TCAATTCCTCATTTGTTGTC+AGG - chr3_3:64885230-64885249 Msa0464730:CDS 35.0%
TTTATAGCGGTTGTGTAAAG+AGG - chr3_3:64885288-64885307 Msa0464730:CDS 35.0%
!! ATCTGCTTTTCCTATGGAGT+GGG + chr3_3:64882449-64882468 None:intergenic 40.0%
!! TATCTGCTTTTCCTATGGAG+TGG + chr3_3:64882450-64882469 None:intergenic 40.0%
! TGGTTTGCAAGGAAAAGCTA+AGG - chr3_3:64882501-64882520 Msa0464730:three_prime_UTR 40.0%
! TATGCTATTTGCTGATGCCA+TGG + chr3_3:64882533-64882552 None:intergenic 40.0%
CAACAATGAAGCAGAGGAAA+TGG + chr3_3:64882560-64882579 None:intergenic 40.0%
TCGATTCAACAATGAAGCAG+AGG + chr3_3:64882566-64882585 None:intergenic 40.0%
! CCTTCTTGTTGTGTTTAAGG+AGG + chr3_3:64882621-64882640 None:intergenic 40.0%
CCTCCTTAAACACAACAAGA+AGG - chr3_3:64882618-64882637 Msa0464730:three_prime_UTR 40.0%
! AAGAGCTTTGACAGTGAAAG+AGG + chr3_3:64882671-64882690 None:intergenic 40.0%
CAGTCAAAAAGAAGAGCTGA+GGG + chr3_3:64882766-64882785 None:intergenic 40.0%
ACAGTCAAAAAGAAGAGCTG+AGG + chr3_3:64882767-64882786 None:intergenic 40.0%
!! GCTCTTCTTTTTGACTGTGA+TGG - chr3_3:64882769-64882788 Msa0464730:CDS 40.0%
! GAGTCGTTGATTACATAGAG+TGG - chr3_3:64882989-64883008 Msa0464730:intron 40.0%
TAATAATTGTTTCCGAGGCG+TGG + chr3_3:64883138-64883157 None:intergenic 40.0%
AGAAAGAACTAGGCGTTACA+TGG - chr3_3:64883240-64883259 Msa0464730:intron 40.0%
GAAAGAACTAGGCGTTACAT+GGG - chr3_3:64883241-64883260 Msa0464730:intron 40.0%
GGTGAGTTGCTTAAAATTGG+AGG - chr3_3:64883278-64883297 Msa0464730:intron 40.0%
GAGTTGCTTAAAATTGGAGG+TGG - chr3_3:64883281-64883300 Msa0464730:intron 40.0%
CGTACTTTAACAAGACAGGT+TGG - chr3_3:64883397-64883416 Msa0464730:CDS 40.0%
TTCCTTTCTTGTTCACCTGT+CGG + chr3_3:64883435-64883454 None:intergenic 40.0%
GCGAAAGACAGAACTATTCA+TGG - chr3_3:64883479-64883498 Msa0464730:intron 40.0%
TAACCAACTTTGCAACACCT+GGG + chr3_3:64883536-64883555 None:intergenic 40.0%
TATGGTTTCGAAACAGCTAG+GGG - chr3_3:64883684-64883703 Msa0464730:intron 40.0%
ACACAGCATTGTCAACAAAC+AGG + chr3_3:64884128-64884147 None:intergenic 40.0%
!!! TACTGGATCAGGCTTTTTTC+GGG + chr3_3:64884305-64884324 None:intergenic 40.0%
GAGGAAAATCTTACTGGATC+AGG + chr3_3:64884316-64884335 None:intergenic 40.0%
!!! ATGGAGCCTTTTTTACCATG+TGG - chr3_3:64884416-64884435 Msa0464730:CDS 40.0%
GAATAACACAATTGGCCACA+TGG + chr3_3:64884434-64884453 None:intergenic 40.0%
GCTTGCAGCTAGTATATAGA+TGG + chr3_3:64884470-64884489 None:intergenic 40.0%
CAATTCTACAGTTGCTGGAT+AGG + chr3_3:64884675-64884694 None:intergenic 40.0%
CCATACAATTCTACAGTTGC+TGG + chr3_3:64884680-64884699 None:intergenic 40.0%
CCAGCAACTGTAGAATTGTA+TGG - chr3_3:64884677-64884696 Msa0464730:intron 40.0%
AAATCAAATCTCTCCTCAGG+AGG + chr3_3:64885114-64885133 None:intergenic 40.0%
TCCTGAGGAGAGATTTGATT+TGG - chr3_3:64885113-64885132 Msa0464730:CDS 40.0%
CAATATGTCAGCTAGCAAAC+TGG - chr3_3:64885162-64885181 Msa0464730:CDS 40.0%
GCAAGGAAAAGCTAAGGCAA+TGG - chr3_3:64882507-64882526 Msa0464730:three_prime_UTR 45.0%
AAAAGCTAAGGCAATGGCCA+TGG - chr3_3:64882513-64882532 Msa0464730:three_prime_UTR 45.0%
GCTTTGACAGTGAAAGAGGA+TGG + chr3_3:64882667-64882686 None:intergenic 45.0%
!! AAAAAGCAGAAGGCACCTCT+TGG + chr3_3:64882849-64882868 None:intergenic 45.0%
ACATGGGACGTGGAATTGTA+CGG - chr3_3:64883257-64883276 Msa0464730:intron 45.0%
ACGGCGTACTTTAACAAGAC+AGG - chr3_3:64883393-64883412 Msa0464730:CDS 45.0%
TCCTTTCTTGTTCACCTGTC+GGG + chr3_3:64883434-64883453 None:intergenic 45.0%
GTAACCAACTTTGCAACACC+TGG + chr3_3:64883537-64883556 None:intergenic 45.0%
AACATACAGGCTTGTCGATC+AGG - chr3_3:64883957-64883976 Msa0464730:intron 45.0%
! GTCGATCAGGCTTTAACTCA+AGG - chr3_3:64883970-64883989 Msa0464730:intron 45.0%
TTGCAGCACTTCCAATGAGA+AGG - chr3_3:64884008-64884027 Msa0464730:intron 45.0%
TATGCATACCGCCTTCTCAT+TGG + chr3_3:64884022-64884041 None:intergenic 45.0%
TCATGACTTAGGTCCTGAGA+TGG + chr3_3:64884195-64884214 None:intergenic 45.0%
!!! ACTGGATCAGGCTTTTTTCG+GGG + chr3_3:64884304-64884323 None:intergenic 45.0%
ATACTAGCTGCAAGCACTCT+CGG - chr3_3:64884475-64884494 Msa0464730:CDS 45.0%
GCCAAATCAAATCTCTCCTC+AGG + chr3_3:64885117-64885136 None:intergenic 45.0%
GGTAAGCCTGACAACAAATG+AGG + chr3_3:64885239-64885258 None:intergenic 45.0%
! CTTCAACAACCAGAAGGCGT+AGG - chr3_3:64882701-64882720 Msa0464730:intron 50.0%
! TAGGTTGAGTTGCTCAGCCT+CGG - chr3_3:64882720-64882739 Msa0464730:exon 50.0%
CCTTTCTTGTTCACCTGTCG+GGG + chr3_3:64883433-64883452 None:intergenic 50.0%
CAGCACTTCCAATGAGAAGG+CGG - chr3_3:64884011-64884030 Msa0464730:intron 50.0%
! TGGATTTTTGCTGCTCGCTC+AGG + chr3_3:64884259-64884278 None:intergenic 50.0%
CCACGTCTCCTGCAAATATC+TGG + chr3_3:64884279-64884298 None:intergenic 50.0%
CCAGATATTTGCAGGAGACG+TGG - chr3_3:64884276-64884295 Msa0464730:intron 50.0%
!! CTCTCGGTGTTGAACCTTCA+AGG - chr3_3:64884491-64884510 Msa0464730:CDS 50.0%
TTACAGATGTGTCGTGGTCG+AGG - chr3_3:64884803-64884822 Msa0464730:intron 50.0%
TAGCAGCAGCTAAAGCAGCT+GGG - chr3_3:64884841-64884860 Msa0464730:intron 50.0%
! CTTCATTGGTGATCCTCCTG+AGG - chr3_3:64885098-64885117 Msa0464730:CDS 50.0%
GCAACTCAACCTACGCCTTC+TGG + chr3_3:64882713-64882732 None:intergenic 55.0%
AAGAAGAGCTGAGGGAAGCG+TGG + chr3_3:64882758-64882777 None:intergenic 55.0%
ACTAGGCGTTACATGGGACG+TGG - chr3_3:64883247-64883266 Msa0464730:intron 55.0%
CCCCGACAGGTGAACAAGAA+AGG - chr3_3:64883430-64883449 Msa0464730:intron 55.0%
AAACTGTTGCCTCTTCGCCC+AGG - chr3_3:64883516-64883535 Msa0464730:intron 55.0%
TTTGCAACACCTGGGCGAAG+AGG + chr3_3:64883528-64883547 None:intergenic 55.0%
! TCGCCCAGGTGTTGCAAAGT+TGG - chr3_3:64883530-64883549 Msa0464730:intron 55.0%
GTGGTCGAGGACAGTGCAAT+AGG - chr3_3:64884816-64884835 Msa0464730:intron 55.0%
CTAGCAGCAGCTAAAGCAGC+TGG - chr3_3:64884840-64884859 Msa0464730:intron 55.0%
GAGTTGCTCAGCCTCGGCTT+CGG - chr3_3:64882726-64882745 Msa0464730:CDS 60.0%
GTGGCTCAGGTGGTTGAGGT+AGG + chr3_3:64883119-64883138 None:intergenic 60.0%
TTGTTTCCGAGGCGTGGCTC+AGG + chr3_3:64883132-64883151 None:intergenic 60.0%
CGTGGAAGATGCCGAAGCCG+AGG + chr3_3:64882740-64882759 None:intergenic 65.0%
AGGCGTGGCTCAGGTGGTTG+AGG + chr3_3:64883123-64883142 None:intergenic 65.0%
CAACCACCTGAGCCACGCCT+CGG - chr3_3:64883123-64883142 Msa0464730:intron 65.0%
TTTCCGAGGCGTGGCTCAGG+TGG + chr3_3:64883129-64883148 None:intergenic 65.0%
! TCACCTGTCGGGGCATTCGC+AGG + chr3_3:64883423-64883442 None:intergenic 65.0%
TGGCCTGCGAATGCCCCGAC+AGG - chr3_3:64883417-64883436 Msa0464730:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 64882443 64885458 64882443 ID=Msa0464730;Name=Msa0464730
chr3_3 mRNA 64882443 64885458 64882443 ID=Msa0464730-mRNA-1;Parent=Msa0464730;Name=Msa0464730-mRNA-1;_AED=0.07;_eAED=0.07;_QI=83|1|1|1|0.87|0.77|9|252|323
chr3_3 exon 64882443 64882677 64882443 ID=Msa0464730-mRNA-1:exon:14338;Parent=Msa0464730-mRNA-1
chr3_3 exon 64882708 64882848 64882708 ID=Msa0464730-mRNA-1:exon:14337;Parent=Msa0464730-mRNA-1
chr3_3 exon 64883012 64883092 64883012 ID=Msa0464730-mRNA-1:exon:14336;Parent=Msa0464730-mRNA-1
chr3_3 exon 64883389 64883435 64883389 ID=Msa0464730-mRNA-1:exon:14335;Parent=Msa0464730-mRNA-1
chr3_3 exon 64883580 64883675 64883580 ID=Msa0464730-mRNA-1:exon:14334;Parent=Msa0464730-mRNA-1
chr3_3 exon 64883869 64883935 64883869 ID=Msa0464730-mRNA-1:exon:14333;Parent=Msa0464730-mRNA-1
chr3_3 exon 64884354 64884512 64884354 ID=Msa0464730-mRNA-1:exon:14332;Parent=Msa0464730-mRNA-1
chr3_3 exon 64884589 64884659 64884589 ID=Msa0464730-mRNA-1:exon:14331;Parent=Msa0464730-mRNA-1
chr3_3 exon 64885049 64885458 64885049 ID=Msa0464730-mRNA-1:exon:14330;Parent=Msa0464730-mRNA-1
chr3_3 five_prime_UTR 64885376 64885458 64885376 ID=Msa0464730-mRNA-1:five_prime_utr;Parent=Msa0464730-mRNA-1
chr3_3 CDS 64885049 64885375 64885049 ID=Msa0464730-mRNA-1:cds;Parent=Msa0464730-mRNA-1
chr3_3 CDS 64884589 64884659 64884589 ID=Msa0464730-mRNA-1:cds;Parent=Msa0464730-mRNA-1
chr3_3 CDS 64884354 64884512 64884354 ID=Msa0464730-mRNA-1:cds;Parent=Msa0464730-mRNA-1
chr3_3 CDS 64883869 64883935 64883869 ID=Msa0464730-mRNA-1:cds;Parent=Msa0464730-mRNA-1
chr3_3 CDS 64883580 64883675 64883580 ID=Msa0464730-mRNA-1:cds;Parent=Msa0464730-mRNA-1
chr3_3 CDS 64883389 64883435 64883389 ID=Msa0464730-mRNA-1:cds;Parent=Msa0464730-mRNA-1
chr3_3 CDS 64883012 64883092 64883012 ID=Msa0464730-mRNA-1:cds;Parent=Msa0464730-mRNA-1
chr3_3 CDS 64882725 64882848 64882725 ID=Msa0464730-mRNA-1:cds;Parent=Msa0464730-mRNA-1
chr3_3 three_prime_UTR 64882708 64882724 64882708 ID=Msa0464730-mRNA-1:three_prime_utr;Parent=Msa0464730-mRNA-1
chr3_3 three_prime_UTR 64882443 64882677 64882443 ID=Msa0464730-mRNA-1:three_prime_utr;Parent=Msa0464730-mRNA-1
Gene Sequence

>Msa0464730

ATGGCCATGGCATCAGCAAATAGCATAATCTCCATTTCCTCTGCTTCATTGTTGAATCGAACTCATCAACCAAAAACAACAACACTTACTAGCCTCCTTAAACACAACAAGAAGGATCATGAACAACACAGTAATTCACCATCCTCTTTCACTGTCAAAGCTCTTAAGATATCAACTTCAACAACCAGAAGGCGTAGGTTGAGTTGCTCAGCCTCGGCTTCGGCATCTTCCACGCTTCCCTCAGCTCTTCTTTTTGACTGTGATGGAGTCCTTGTTGACACTGAAAAAGATGGCCACCGCATTTCTTTCAATGATACTTTCCAAGAGAAAGAACTAGGCGTTACATGGGACGTGGAATTGTACGGTGAGTTGCTTAAAATTGGAGGTGGAAAAGAAAGGATGACGGCGTACTTTAACAAGACAGGTTGGCCTGCGAATGCCCCGACAGGTGAACAAGAAAGGAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTCGATCAGGCTTTAACTCAAGGAGTCAATGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATGTTTACTGGGACCTGAGCGAGCAGCAAAAATCCAGATATTTGCAGGAGACGTGGTTCCCCGAAAAAAGCCTGATCCAGCCATCTATATACTAGCTGCAAGCACTCTCGGTGTTGAACCTTCAAGATGTGTCGTGGTCGAGGACAGTGCAATAGGTCTAGCAGCAGCTAAAGCAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTTTGTGGTAGCCTTCTTGAGAAGCAATATGTCAGCTAG

Protein sequence

>Msa0464730

MAMASANSIISISSASLLNRTHQPKTTTLTSLLKHNKKDHEQHSNSPSSFTVKALKISTSTTRRRRLSCSASASASSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAVSAIVSCLLGPERAAKIQIFAGDVVPRKKPDPAIYILAASTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS*