AlfalfaGEDB | Msa0976490

M. sativa cultivar zhongmu-4 / Msa0976490

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
PFAM: PF10250.12

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976490	XP_013451116.1	97.856	513	9	1	1	511	1	513	0.0	1033

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976490	sp\|Q4V398\|RRT1_ARATH	71.169	496	140	2	16	510	10	503	0.0	759

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976490	A0A072U6Z8	97.856	513	9	1	1	511	1	513	0.0	1033

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037180	Msa0976490	0.845384	4.200461e-59	-8.615850e-47
Msa0092220	Msa0976490	0.831014	2.121633e-55	-8.615850e-47
Msa0103830	Msa0976490	0.812911	3.339793e-51	-8.615850e-47
Msa0610230	Msa0976490	0.809532	1.806262e-50	-8.615850e-47
Msa0658510	Msa0976490	0.809466	1.866118e-50	-8.615850e-47
Msa0703420	Msa0976490	0.808932	2.429118e-50	-8.615850e-47
Msa0705520	Msa0976490	0.813929	1.995543e-51	-8.615850e-47
Msa0721930	Msa0976490	0.835611	1.517415e-56	-8.615850e-47
Msa0762930	Msa0976490	0.834840	2.374712e-56	-8.615850e-47
Msa0150330	Msa0976490	0.819187	1.324803e-52	-8.615850e-47
Msa0174060	Msa0976490	-0.804838	1.782757e-49	-8.615850e-47
Msa0177320	Msa0976490	0.847647	1.013002e-59	-8.615850e-47
Msa0180100	Msa0976490	-0.830282	3.205940e-55	-8.615850e-47
Msa0184510	Msa0976490	-0.821854	3.236335e-53	-8.615850e-47
Msa0390590	Msa0976490	-0.800031	1.743672e-48	-8.615850e-47
Msa0432970	Msa0976490	0.800609	1.330128e-48	-8.615850e-47
Msa0463970	Msa0976490	0.800417	1.455470e-48	-8.615850e-47
Msa0477030	Msa0976490	0.801763	7.721290e-49	-8.615850e-47
Msa0563440	Msa0976490	0.801148	1.032340e-48	-8.615850e-47
Msa0580210	Msa0976490	0.800553	1.365349e-48	-8.615850e-47
Msa0874820	Msa0976490	0.847216	1.330674e-59	-8.615850e-47
Msa0907170	Msa0976490	0.838858	2.239965e-57	-8.615850e-47
Msa0931550	Msa0976490	-0.810920	9.068412e-51	-8.615850e-47
Msa0976490	Msa1079780	0.802681	4.999373e-49	-8.615850e-47
Msa0976490	Msa1090150	0.804489	2.108026e-49	-8.615850e-47
Msa0976490	Msa1297220	-0.809181	2.147784e-50	-8.615850e-47
Msa0976490	Msa1343450	-0.809547	1.793045e-50	-8.615850e-47
Msa0976490	Msa1371300	0.806355	8.565635e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976490	MtrunA17_Chr6g0455571	97.856	513	9	1	1	511	1	513	0.0	1033
Msa0976490	MtrunA17_Chr4g0061781	77.754	472	101	1	44	511	43	514	0.0	780
Msa0976490	MtrunA17_Chr2g0307971	75.417	480	112	3	32	510	39	513	0.0	765
Msa0976490	MtrunA17_Chr4g0042711	58.436	486	194	3	23	505	8	488	0.0	597
Msa0976490	MtrunA17_Chr5g0417871	58.263	472	184	4	43	505	9	476	0.0	591
Msa0976490	MtrunA17_Chr4g0008451	49.622	397	181	5	112	501	231	615	1.99e-131	395
Msa0976490	MtrunA17_Chr4g0070551	48.849	391	193	5	112	501	227	611	5.03e-131	394
Msa0976490	MtrunA17_Chr5g0426591	49.751	402	193	4	112	505	110	510	7.97e-131	390
Msa0976490	MtrunA17_Chr5g0436321	49.100	389	191	5	114	501	162	544	1.43e-129	388
Msa0976490	MtrunA17_Chr3g0132371	50.374	401	187	5	113	505	141	537	2.65e-128	384
Msa0976490	MtrunA17_Chr3g0129981	46.192	407	205	7	108	505	109	510	4.14e-121	365
Msa0976490	MtrunA17_Chr3g0143821	43.182	396	209	8	112	505	110	491	5.06e-96	302
Msa0976490	MtrunA17_Chr4g0056061	42.439	410	219	9	106	511	101	497	7.30e-96	300
Msa0976490	MtrunA17_Chr5g0399311	42.787	409	217	9	106	510	117	512	1.54e-95	299
Msa0976490	MtrunA17_Chr5g0448581	41.837	392	211	7	116	505	122	498	2.13e-93	295
Msa0976490	MtrunA17_Chr1g0204121	40.976	410	223	9	96	500	72	467	4.01e-86	274
Msa0976490	MtrunA17_Chr3g0123521	37.468	387	220	6	112	482	149	529	8.69e-82	264
Msa0976490	MtrunA17_Chr5g0412251	34.813	428	233	9	112	505	85	500	2.27e-80	259
Msa0976490	MtrunA17_Chr4g0043911	36.010	411	233	10	112	505	149	546	2.85e-80	261
Msa0976490	MtrunA17_Chr3g0132951	34.773	440	236	11	104	505	88	514	1.35e-79	258
Msa0976490	MtrunA17_Chr2g0284071	37.170	417	220	9	96	472	198	612	8.59e-79	259
Msa0976490	MtrunA17_Chr5g0424241	37.170	417	233	11	114	511	158	564	9.89e-79	257
Msa0976490	MtrunA17_Chr3g0077321	37.922	385	220	8	101	471	135	514	1.30e-78	256
Msa0976490	MtrunA17_Chr1g0160781	35.280	411	236	10	112	505	148	545	3.16e-78	255
Msa0976490	MtrunA17_Chr1g0204141	39.286	392	225	8	86	470	64	449	1.15e-76	249
Msa0976490	MtrunA17_Chr3g0087291	38.503	374	216	6	116	485	176	539	7.13e-76	249
Msa0976490	MtrunA17_Chr4g0010511	36.031	383	213	7	116	485	236	599	6.73e-68	229
Msa0976490	MtrunA17_Chr4g0075311	34.852	439	228	11	113	505	164	590	3.99e-67	227
Msa0976490	MtrunA17_Chr4g0003561	34.770	348	208	7	112	455	74	406	9.24e-60	203
Msa0976490	MtrunA17_Chr7g0240241	62.903	124	42	1	273	392	1	124	1.57e-49	166
Msa0976490	MtrunA17_Chr1g0146501	35.473	296	175	6	112	393	89	382	2.37e-44	166
Msa0976490	MtrunA17_Chr3g0127811	32.312	359	206	10	47	393	9	342	1.47e-43	160
Msa0976490	MtrunA17_Chr7g0220381	31.908	304	177	8	112	394	97	391	2.77e-40	154
Msa0976490	MtrunA17_Chr4g0002361	23.410	346	215	13	109	444	82	387	1.32e-18	88.2
Msa0976490	MtrunA17_Chr1g0172911	56.522	69	6	1	110	154	18	86	7.87e-17	77.0
Msa0976490	MtrunA17_Chr1g0172911	64.000	50	18	0	226	275	80	129	8.02e-14	68.6
Msa0976490	MtrunA17_Chr2g0298881	23.099	355	209	10	106	443	28	335	6.11e-16	79.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0976490	AT5G15740.1	71.169	496	140	2	16	510	10	503	0.0	759
Msa0976490	AT3G02250.1	70.766	496	142	2	16	510	10	503	0.0	745
Msa0976490	AT1G14020.1	60.385	467	178	2	39	505	23	482	0.0	615
Msa0976490	AT2G03280.1	57.725	466	183	4	41	505	28	480	0.0	577
Msa0976490	AT2G03280.2	54.564	493	183	5	41	505	28	507	0.0	561
Msa0976490	AT2G37980.1	50.126	397	188	6	112	505	225	614	6.69e-131	394
Msa0976490	AT5G35570.1	48.718	390	191	5	114	501	252	634	4.41e-127	385
Msa0976490	AT3G54100.1	48.232	396	197	5	112	505	221	610	3.75e-126	382
Msa0976490	AT1G22460.1	46.650	403	201	5	112	505	159	556	6.74e-125	377
Msa0976490	AT5G64600.1	47.215	413	192	7	108	505	112	513	4.42e-124	373
Msa0976490	AT5G01100.1	48.615	397	192	5	110	501	213	602	5.81e-124	376
Msa0976490	AT4G38390.1	43.291	395	211	7	112	505	122	504	1.58e-100	313
Msa0976490	AT1G76270.1	43.309	411	215	10	97	505	91	485	1.19e-98	309
Msa0976490	AT1G20550.1	40.988	405	212	9	108	505	104	488	8.41e-95	299
Msa0976490	AT4G16650.2	42.432	403	216	9	105	505	114	502	3.82e-89	284
Msa0976490	AT4G16650.1	42.432	403	216	9	105	505	114	502	3.82e-89	284
Msa0976490	AT4G24530.1	36.597	429	224	10	112	505	100	515	6.36e-85	272
Msa0976490	AT3G26370.1	37.129	404	230	7	95	482	142	537	9.53e-85	273
Msa0976490	AT1G04910.1	40.100	399	221	9	106	500	83	467	8.70e-84	269
Msa0976490	AT1G38065.2	37.621	412	230	11	113	505	26	429	1.48e-83	266
Msa0976490	AT1G38065.1	37.621	412	230	11	113	505	36	439	1.87e-83	266
Msa0976490	AT1G38131.1	37.956	411	230	11	113	505	155	558	5.48e-82	266
Msa0976490	AT5G65470.1	36.111	432	224	11	112	505	84	501	6.80e-82	263
Msa0976490	AT5G63390.1	38.770	374	214	6	116	484	167	530	1.38e-79	259
Msa0976490	AT1G35510.1	39.837	369	201	7	113	466	159	521	3.97e-78	255
Msa0976490	AT2G01480.1	36.104	385	223	8	112	479	153	531	5.98e-78	255
Msa0976490	AT1G14970.3	36.719	384	220	8	113	479	9	386	1.39e-77	249
Msa0976490	AT1G14970.2	36.719	384	220	8	113	479	35	412	2.85e-77	249
Msa0976490	AT2G01480.2	37.047	359	208	6	112	455	153	508	9.04e-77	251
Msa0976490	AT1G14970.1	36.719	384	220	8	113	479	155	532	9.92e-76	249
Msa0976490	AT1G11990.1	38.070	373	216	8	114	473	191	561	8.25e-74	244
Msa0976490	AT1G62330.1	35.468	406	211	9	114	473	222	622	9.47e-74	246
Msa0976490	AT1G29200.4	37.437	398	209	8	113	472	70	465	2.38e-73	241
Msa0976490	AT1G29200.1	37.437	398	209	8	113	472	70	465	2.38e-73	241
Msa0976490	AT1G29200.2	37.561	410	215	9	101	472	175	581	2.41e-72	241
Msa0976490	AT1G29200.3	37.150	393	207	8	118	472	1	391	5.69e-71	233
Msa0976490	AT2G44500.1	36.364	374	225	5	116	485	180	544	2.35e-69	233
Msa0976490	AT1G11990.2	34.634	410	216	8	114	473	176	583	1.80e-68	231
Msa0976490	AT3G07900.1	35.200	375	228	7	116	485	191	555	3.42e-68	229
Msa0976490	AT1G52630.1	34.203	345	212	7	112	455	73	403	4.32e-58	199
Msa0976490	AT1G52630.2	32.523	329	207	7	128	455	1	315	1.26e-49	174
Msa0976490	AT3G03810.2	35.410	305	173	7	107	393	83	381	1.33e-48	178
Msa0976490	AT3G03810.1	35.410	305	173	7	107	393	83	381	1.33e-48	178
Msa0976490	AT3G26370.2	38.208	212	118	4	95	297	142	349	5.15e-42	155
Msa0976490	AT3G30300.2	32.013	303	173	9	106	387	96	386	9.40e-39	150
Msa0976490	AT3G30300.1	32.013	303	173	9	106	387	96	386	9.40e-39	150
Msa0976490	AT2G44500.2	36.638	232	137	4	116	343	180	405	1.63e-34	135

Find 130 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGATTGCAATTGGAGAATTT+TGG	0.164028	6_4:+10602424	Msa0976490:CDS
CAAAATCATAACTTTCCTTC+TGG	0.189397	6_4:+10601541	Msa0976490:five_prime_UTR
ATGAGATTTCTTCACCTTAA+TGG	0.201192	6_4:-10605175	None:intergenic
GAGGAATTGGAGAAGGAAAT+TGG	0.204892	6_4:-10601267	None:intergenic
AGAAAGCATAATTGAATCTA+AGG	0.239496	6_4:-10605416	None:intergenic
GTCGAGCATCGGTCTTATTT+AGG	0.246601	6_4:-10603864	None:intergenic
CTATTACTACTGTGATTCTT+TGG	0.265553	6_4:+10602385	Msa0976490:CDS
CCATTTGTGATGAGTGGTTT+TGG	0.268432	6_4:-10604548	None:intergenic
ATTCAATTATGCTTTCTTCT+TGG	0.275452	6_4:+10605422	Msa0976490:three_prime_UTR
TAAGAATAATGGTTATCTTA+TGG	0.276020	6_4:+10603195	Msa0976490:CDS
AGCTTGATAAATCGTCATTC+TGG	0.276618	6_4:+10603420	Msa0976490:CDS
TTGAATTAGTCCATGTAAAT+AGG	0.282147	6_4:-10605607	None:intergenic
AGATGAAGTTAGAATATTAA+AGG	0.285974	6_4:+10603622	Msa0976490:CDS
GTGAAGCTCAAGCAAGTAAT+TGG	0.286059	6_4:+10602176	Msa0976490:five_prime_UTR
CAATAAAACAATACCTTCTA+TGG	0.300626	6_4:-10604653	None:intergenic
TCAGGGATTTATAAGAATAA+TGG	0.316108	6_4:+10603184	Msa0976490:intron
CTCAAGAGAAGAGTTGAATT+AGG	0.338975	6_4:+10603659	Msa0976490:CDS
GAGGGAAAGAGGACCTTTCC+TGG	0.367903	6_4:+10604002	Msa0976490:CDS
AAGTGATCACTGTGAGGAAA+TGG	0.367940	6_4:+10602272	Msa0976490:CDS
GAAATATCCGACCAACTAAT+CGG	0.379890	6_4:-10603701	None:intergenic
ATTCAAATTTATATTGCTGC+TGG	0.386692	6_4:+10604329	Msa0976490:CDS
TTCTTTCTACCGACCAAGTT+AGG	0.387922	6_4:-10604401	None:intergenic
CTTCATTCTCCAACCTTATG+TGG	0.389204	6_4:+10601569	Msa0976490:five_prime_UTR
AAATTTGAAATTCTCTCAAA+AGG	0.390855	6_4:-10601511	None:intergenic
ACCGTCTTTCCTCTTAAGTT+CGG	0.391839	6_4:-10604243	None:intergenic
AAAATCATAACTTTCCTTCT+GGG	0.392804	6_4:+10601542	Msa0976490:five_prime_UTR
TCTTGGCGACTGAAACAATA+AGG	0.397559	6_4:-10602471	None:intergenic
TATCTTATGGTTTCTTGCAA+TGG	0.398386	6_4:+10603208	Msa0976490:CDS
GTTGTTCAGTTGATTGCAAT+TGG	0.399638	6_4:+10602414	Msa0976490:CDS
ATTGCTGCTGGAGAAATATT+CGG	0.400610	6_4:+10604341	Msa0976490:CDS
GGCATACCCTTCAACAACTT+TGG	0.401643	6_4:-10602450	None:intergenic
GAGGACTATGAATAAATTAG+AGG	0.402477	6_4:-10605341	None:intergenic
TATTCATATATTGATCTATG+AGG	0.414820	6_4:-10605128	None:intergenic
AAGATAAGGTGATTCTCTAT+AGG	0.428065	6_4:-10605305	None:intergenic
ATATTTGTTCCAACATATGA+TGG	0.428867	6_4:+10604606	Msa0976490:CDS
TATTAGTCCTTTGTAATATG+TGG	0.430135	6_4:+10605548	Msa0976490:intron
ATTTAAGTTGCATCCACATA+AGG	0.431026	6_4:-10601582	None:intergenic
CTCATCACAAATGGCTGCAT+TGG	0.431973	6_4:+10604557	Msa0976490:CDS
TGTAGCAAAGGCTAGTGTTT+CGG	0.441505	6_4:+10602512	Msa0976490:CDS
TTCTTAGATATGCTTATCCT+TGG	0.441599	6_4:+10604198	Msa0976490:intron
TATGAATAAGTCATTAAGTT+GGG	0.441690	6_4:+10605143	Msa0976490:CDS
GACATTAATTCCTATTTACA+TGG	0.442640	6_4:+10605597	Msa0976490:three_prime_UTR
TTAGATATGCTTATCCTTGG+TGG	0.452084	6_4:+10604201	Msa0976490:intron
AAATATCCGACCAACTAATC+GGG	0.453315	6_4:-10603700	None:intergenic
TCAGATTCCTAGGTTTCAAA+AGG	0.462223	6_4:+10605073	Msa0976490:intron
TTTCAAAAGGACTATACTAC+TGG	0.463113	6_4:+10605086	Msa0976490:CDS
CGCAGATTCTTCCTCTCATA+CGG	0.465185	6_4:+10603824	Msa0976490:intron
TCATAAATTCCGAACTTAAG+AGG	0.466422	6_4:+10604234	Msa0976490:CDS
AAGTCGTTGAAGGCCATAGA+AGG	0.466633	6_4:+10604640	Msa0976490:CDS
GCGAGCTACTTATCCTAACT+TGG	0.472434	6_4:+10604388	Msa0976490:CDS
TGCTCTAATACTGAAAGCAC+TGG	0.474801	6_4:+10604292	Msa0976490:CDS
GAGATTCCGGCGAAGATCGC+CGG	0.476159	6_4:-10601304	None:intergenic
TTGGGGTCCAAAGTTGTTGA+AGG	0.477681	6_4:+10602443	Msa0976490:CDS
AGTATTAGAGCAGTTTCCTC+AGG	0.478111	6_4:-10604281	None:intergenic
AAAGGCTAGTGTTTCGGCTA+AGG	0.479165	6_4:+10602518	Msa0976490:CDS
ATATGAATAAGTCATTAAGT+TGG	0.479816	6_4:+10605142	Msa0976490:CDS
TATCTACATCAAATATGTCT+TGG	0.480238	6_4:-10603580	None:intergenic
AATCACCTTATCTTTGCTAA+AGG	0.482669	6_4:+10605314	Msa0976490:three_prime_UTR
TAGATATGAGATGGATATGT+TGG	0.483181	6_4:+10604035	Msa0976490:CDS
AATTTGAAATTCTCTCAAAA+GGG	0.483441	6_4:-10601510	None:intergenic
GCTTGATAAATCGTCATTCT+GGG	0.485095	6_4:+10603421	Msa0976490:CDS
CCAAAACCACTCATCACAAA+TGG	0.486452	6_4:+10604548	Msa0976490:CDS
ATTCATATATTGATCTATGA+GGG	0.488263	6_4:-10605127	None:intergenic
CTTATGGTTTCTTGCAATGG+AGG	0.488912	6_4:+10603211	Msa0976490:CDS
ATGTGATAGCAGCGAGGTTG+AGG	0.489083	6_4:+10604080	Msa0976490:CDS
TGGAAATACATCAAATCTGA+AGG	0.489779	6_4:-10604528	None:intergenic
GCCATCCACACTTTGATCCT+CGG	0.489874	6_4:-10602357	None:intergenic
CTTTGTAATATGTGGAGTAA+TGG	0.490118	6_4:+10605556	Msa0976490:intron
GCAGTTTCCTCAGGTGTTAA+CGG	0.492035	6_4:-10604272	None:intergenic
CATATCTAAGATGAAGTACC+AGG	0.495742	6_4:-10604020	None:intergenic
GCCATGTTTCCATCATATGT+TGG	0.500626	6_4:-10604615	None:intergenic
GAAATCTCATGCCAAGAGGA+TGG	0.502076	6_4:+10605188	Msa0976490:CDS
ATGAAGTTGTGAAGTCTAAG+AGG	0.505853	6_4:+10602322	Msa0976490:CDS
GGTAAGGAAGGAAACTCTGC+TGG	0.511062	6_4:+10604503	Msa0976490:intron
TTATCCTTGGTGGAAGGAAA+AGG	0.516235	6_4:+10604211	Msa0976490:CDS
CTACAGATGAAGATGCATCT+TGG	0.531411	6_4:-10602488	None:intergenic
TCAACTCTTCTCTTGAGCCT+AGG	0.531532	6_4:-10603653	None:intergenic
TCCGAACTTAAGAGGAAAGA+CGG	0.533451	6_4:+10604242	Msa0976490:CDS
TGGCAAGCATTCATGAGGGT+TGG	0.533454	6_4:-10605271	None:intergenic
CGTCATTCTGGGCCGATCCA+AGG	0.538229	6_4:+10603432	Msa0976490:CDS
TTCATCTGTAGTTGTAGCAA+AGG	0.540883	6_4:+10602500	Msa0976490:CDS
GAAAGCATAATTGAATCTAA+GGG	0.541349	6_4:-10605415	None:intergenic
AACATGGCTAAAGTCGTTGA+AGG	0.548148	6_4:+10604630	Msa0976490:CDS
AAATCATAACTTTCCTTCTG+GGG	0.552515	6_4:+10601543	Msa0976490:five_prime_UTR
AATGACGATTTATCAAGCTC+TGG	0.553192	6_4:-10603416	None:intergenic
GTGAAGAATAGCGTGAAAAG+AGG	0.556347	6_4:-10605360	None:intergenic
AAGTTGCATCCACATAAGGT+TGG	0.559611	6_4:-10601578	None:intergenic
TCCATGAGTGCAGCCAGAAA+AGG	0.561793	6_4:-10604058	None:intergenic
CTCTATAGGTCATCTAGAAG+TGG	0.565984	6_4:-10605291	None:intergenic
TGGGGTCCAAAGTTGTTGAA+GGG	0.569861	6_4:+10602444	Msa0976490:CDS
GCATGCCTTTAGCAAAGATA+AGG	0.570983	6_4:-10605319	None:intergenic
AAATCTCATGCCAAGAGGAT+GGG	0.571821	6_4:+10605189	Msa0976490:CDS
AGGTTATCAAAAGTATCTGA+TGG	0.572072	6_4:+10602246	Msa0976490:CDS
ACTTCATCTTAGATATGAGA+TGG	0.574403	6_4:+10604026	Msa0976490:CDS
CTAAGATGAAGTACCAGGAA+AGG	0.576609	6_4:-10604015	None:intergenic
GCCGAGGATCAAAGTGTGGA+TGG	0.578147	6_4:+10602356	Msa0976490:CDS
CACTGTGAGGAAATGGAGAT+GGG	0.579908	6_4:+10602279	Msa0976490:CDS
ACTCTTCTCTTGAGCCTAGG+TGG	0.580749	6_4:-10603650	None:intergenic
ATATGCTTATCCTTGGTGGA+AGG	0.581937	6_4:+10604205	Msa0976490:CDS
ATTCGGTGGAAAGAGAAGAA+TGG	0.589294	6_4:+10604358	Msa0976490:CDS
ACCTTGTGTTTCCGTATGAG+AGG	0.596897	6_4:-10603835	None:intergenic
TCACTGTGAGGAAATGGAGA+TGG	0.598317	6_4:+10602278	Msa0976490:CDS
AGAGGTTTGTTGTAAAGCCG+AGG	0.599346	6_4:+10602340	Msa0976490:CDS
ATGCAGCCATTTGTGATGAG+TGG	0.600456	6_4:-10604554	None:intergenic
TCAACGCATTAAAATTTACT+CGG	0.602768	6_4:-10603930	None:intergenic
GATCTTCGCCGGAATCTCAT+CGG	0.605646	6_4:+10601309	Msa0976490:five_prime_UTR
ATTGTTAGCAAGTCGAGCAT+CGG	0.606467	6_4:-10603875	None:intergenic
TTGAGGAACTCACACGAATG+AGG	0.617787	6_4:+10604097	Msa0976490:CDS
TTCATATATTGATCTATGAG+GGG	0.618712	6_4:-10605126	None:intergenic
AGAAGTGGCAAGCATTCATG+AGG	0.621835	6_4:-10605276	None:intergenic
ATTCTTCACTACAATCGCGA+TGG	0.625191	6_4:+10605374	Msa0976490:three_prime_UTR
ACTTCTCAGATAGAACAACT+AGG	0.625398	6_4:+10603958	Msa0976490:CDS
ACAATGTGCAAACCTTGGAT+CGG	0.628923	6_4:-10603444	None:intergenic
TTGAGAGGGCCTAAAACCAG+AGG	0.633837	6_4:+10605715	Msa0976490:three_prime_UTR
TCCAACATATGATGGAAACA+TGG	0.636574	6_4:+10604614	Msa0976490:CDS
TCTACTACCACAGGTAAGGA+AGG	0.638240	6_4:+10604491	Msa0976490:intron
AATATCCGACCAACTAATCG+GGG	0.639424	6_4:-10603699	None:intergenic
GATGCTCGACTTGCTAACAA+TGG	0.647559	6_4:+10603877	Msa0976490:CDS
AACTAGGTAGAAAGATAGTG+AGG	0.649462	6_4:+10603974	Msa0976490:CDS
TATTCTGCAGATATGCGACA+TGG	0.654426	6_4:+10603355	Msa0976490:intron
TAAAGCCGAGGATCAAAGTG+TGG	0.669923	6_4:+10602352	Msa0976490:CDS
TCCTCTCATACGGAAACACA+AGG	0.673092	6_4:+10603834	Msa0976490:CDS
GAGAATGAAGACACCCCAGA+AGG	0.675788	6_4:-10601556	None:intergenic
TTTATGTCCGTTAACACCTG+AGG	0.675937	6_4:+10604265	Msa0976490:CDS
TATTAAAGGAACTACCACCT+AGG	0.678913	6_4:+10603636	Msa0976490:CDS
TGAAGAAATCTCATGCCAAG+AGG	0.682299	6_4:+10605184	Msa0976490:CDS
GCTGCTGGAGAAATATTCGG+TGG	0.702946	6_4:+10604344	Msa0976490:CDS
GAAGTGGCAAGCATTCATGA+GGG	0.714656	6_4:-10605275	None:intergenic
ATATCCGACCAACTAATCGG+GGG	0.718638	6_4:-10603698	None:intergenic
TCATGGATGTGATAGCAGCG+AGG	0.773321	6_4:+10604074	Msa0976490:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATATAGATATAAAAAACAA+AGG	-	chr6_4:10602091-10602110	None:intergenic	10.0%
!!!	TTTTGAATTTTTGTTATATG+TGG	+	chr6_4:10601749-10601768	Msa0976490:intron	15.0%
!!!	TTGATATTTTGATGTTTTTA+AGG	+	chr6_4:10601828-10601847	Msa0976490:intron	15.0%
!!	TCATATAAATTTAATGATTG+CGG	-	chr6_4:10603293-10603312	None:intergenic	15.0%
!!!	AATGAAAAAAATATTTTGAG+AGG	+	chr6_4:10605700-10605719	Msa0976490:three_prime_UTR	15.0%
!!!	ATGAAAAAAATATTTTGAGA+GGG	+	chr6_4:10605701-10605720	Msa0976490:three_prime_UTR	15.0%
!!!	TTAATGGAGATATGATTTTT+CGG	-	chr6_4:10601343-10601362	None:intergenic	20.0%
!!	ATTCAGAAAAATCTACAAAA+GGG	-	chr6_4:10601445-10601464	None:intergenic	20.0%
!!	AATTCAGAAAAATCTACAAA+AGG	-	chr6_4:10601446-10601465	None:intergenic	20.0%
!!!	AAAGATTAATCACTTTTCAA+TGG	-	chr6_4:10601488-10601507	None:intergenic	20.0%
!!!	AATTTGAAATTCTCTCAAAA+GGG	-	chr6_4:10601513-10601532	None:intergenic	20.0%
!!!	AAATTTGAAATTCTCTCAAA+AGG	-	chr6_4:10601514-10601533	None:intergenic	20.0%
!!!	TTGTTTTTGAATTCTGTTTT+TGG	+	chr6_4:10601625-10601644	Msa0976490:intron	20.0%
!!	AAATTTCATGCCAAAAAATA+AGG	-	chr6_4:10601935-10601954	None:intergenic	20.0%
!!!	TATTATTTTTGAGAAGTCAA+TGG	+	chr6_4:10601954-10601973	Msa0976490:intron	20.0%
!!!	TTTGATTTGCATTTATTTCA+TGG	+	chr6_4:10601984-10602003	Msa0976490:intron	20.0%
!!	TGATAAGAATAAGAATCTTA+TGG	+	chr6_4:10603132-10603151	Msa0976490:intron	20.0%
!!!	ATTTGATAATTCTTTTCATC+AGG	+	chr6_4:10603166-10603185	Msa0976490:intron	20.0%
!!!	TTTGATAATTCTTTTCATCA+GGG	+	chr6_4:10603167-10603186	Msa0976490:intron	20.0%
!!	TAAGAATAATGGTTATCTTA+TGG	+	chr6_4:10603195-10603214	Msa0976490:CDS	20.0%
!!!	ATTCTGTTTTTCTCAAAATT+TGG	+	chr6_4:10603327-10603346	Msa0976490:intron	20.0%
!!	AGATGAAGTTAGAATATTAA+AGG	+	chr6_4:10603622-10603641	Msa0976490:CDS	20.0%
!!	ACTAAATGAAAACACATTTA+AGG	+	chr6_4:10604890-10604909	Msa0976490:intron	20.0%
!!!	TTGTAATTTTGATACATTCA+AGG	+	chr6_4:10604951-10604970	Msa0976490:intron	20.0%
!!	ATTCATATATTGATCTATGA+GGG	-	chr6_4:10605130-10605149	None:intergenic	20.0%
!!	TATTCATATATTGATCTATG+AGG	-	chr6_4:10605131-10605150	None:intergenic	20.0%
!!	ATATGAATAAGTCATTAAGT+TGG	+	chr6_4:10605142-10605161	Msa0976490:CDS	20.0%
!!	TATGAATAAGTCATTAAGTT+GGG	+	chr6_4:10605143-10605162	Msa0976490:CDS	20.0%
!!!	TAAAAATAGTCTTCTTCTTT+TGG	-	chr6_4:10605249-10605268	None:intergenic	20.0%
!!	ACTAAAAAAACTAAATAACG+AGG	-	chr6_4:10605507-10605526	None:intergenic	20.0%
!!	TAACATGAACTAAACATTAA+TGG	-	chr6_4:10605530-10605549	None:intergenic	20.0%
!!!	GGAATTAATGTCATATTTTA+GGG	-	chr6_4:10605589-10605608	None:intergenic	20.0%
!!!	AGGAATTAATGTCATATTTT+AGG	-	chr6_4:10605590-10605609	None:intergenic	20.0%
!!!	GAAGTTAAGTGTAGTTTTAA+TGG	-	chr6_4:10601359-10601378	None:intergenic	25.0%
!!	GTTGAAAAATGGTGAAATTT+TGG	-	chr6_4:10601381-10601400	None:intergenic	25.0%
!!!	AATCTACAAAAGGGTTTTTT+TGG	-	chr6_4:10601436-10601455	None:intergenic	25.0%
!	AAAATCATAACTTTCCTTCT+GGG	+	chr6_4:10601542-10601561	Msa0976490:five_prime_UTR	25.0%
!!!	AATTTGACCACCTTATTTTT+TGG	+	chr6_4:10601922-10601941	Msa0976490:intron	25.0%
!	AAAAATCAATGATGTTGTTG+AGG	+	chr6_4:10602226-10602245	Msa0976490:exon	25.0%
!!!	ACAACCAAAAACTTACTTTT+TGG	-	chr6_4:10602555-10602574	None:intergenic	25.0%
!	AGAACTTTGAATCATAAACA+CGG	+	chr6_4:10602618-10602637	Msa0976490:intron	25.0%
!!	TATAAAGGCACAATCTAATT+AGG	-	chr6_4:10602859-10602878	None:intergenic	25.0%
!	TAGATTGTGCCTTTATATTA+TGG	+	chr6_4:10602862-10602881	Msa0976490:intron	25.0%
!	TCAGGGATTTATAAGAATAA+TGG	+	chr6_4:10603184-10603203	Msa0976490:intron	25.0%
!	GAGATTTCAATTAAGAAATC+AGG	-	chr6_4:10603528-10603547	None:intergenic	25.0%
!	AACATCAAAGTAACAAAAAG+AGG	-	chr6_4:10603550-10603569	None:intergenic	25.0%
!	TATCTACATCAAATATGTCT+TGG	-	chr6_4:10603583-10603602	None:intergenic	25.0%
!	TCAACGCATTAAAATTTACT+CGG	-	chr6_4:10603933-10603952	None:intergenic	25.0%
!	ATTCAAATTTATATTGCTGC+TGG	+	chr6_4:10604329-10604348	Msa0976490:CDS	25.0%
!!!	TGTTTGTAACCTTTTTTTTC+CGG	+	chr6_4:10604467-10604486	Msa0976490:intron	25.0%
!	ATATTTGTTCCAACATATGA+TGG	+	chr6_4:10604606-10604625	Msa0976490:CDS	25.0%
!	CAATAAAACAATACCTTCTA+TGG	-	chr6_4:10604656-10604675	None:intergenic	25.0%
!	CAATCTAAATAGTACATCAA+AGG	-	chr6_4:10604719-10604738	None:intergenic	25.0%
!!!	ATTTTAGTCCTTAAATGTGT+AGG	+	chr6_4:10604781-10604800	Msa0976490:intron	25.0%
!	TGTAATTTCAATTCATTCAG+AGG	-	chr6_4:10604821-10604840	None:intergenic	25.0%
!	TCAAAGACCAAAATGATTAT+TGG	+	chr6_4:10605003-10605022	Msa0976490:intron	25.0%
!!	ATTAGAGCCAATAATCATTT+TGG	-	chr6_4:10605013-10605032	None:intergenic	25.0%
!!	TTCATTTTATTCAGATTCCT+AGG	+	chr6_4:10605063-10605082	Msa0976490:intron	25.0%
!	TTCATATATTGATCTATGAG+GGG	-	chr6_4:10605129-10605148	None:intergenic	25.0%
!!	GAAAGCATAATTGAATCTAA+GGG	-	chr6_4:10605418-10605437	None:intergenic	25.0%
!!	AGAAAGCATAATTGAATCTA+AGG	-	chr6_4:10605419-10605438	None:intergenic	25.0%
!	ATTCAATTATGCTTTCTTCT+TGG	+	chr6_4:10605422-10605441	Msa0976490:three_prime_UTR	25.0%
!	TATTAGTCCTTTGTAATATG+TGG	+	chr6_4:10605548-10605567	Msa0976490:intron	25.0%
!	GACATTAATTCCTATTTACA+TGG	+	chr6_4:10605597-10605616	Msa0976490:three_prime_UTR	25.0%
!	TTGAATTAGTCCATGTAAAT+AGG	-	chr6_4:10605610-10605629	None:intergenic	25.0%
	GAAAAGAAAAAGAGAGGAAT+TGG	-	chr6_4:10601283-10601302	None:intergenic	30.0%
	GAAGTAGCAATGTTGAAAAA+TGG	-	chr6_4:10601392-10601411	None:intergenic	30.0%
	CAAAATCATAACTTTCCTTC+TGG	+	chr6_4:10601541-10601560	Msa0976490:five_prime_UTR	30.0%
	AAATCATAACTTTCCTTCTG+GGG	+	chr6_4:10601543-10601562	Msa0976490:five_prime_UTR	30.0%
!!	ATTTAAGTTGCATCCACATA+AGG	-	chr6_4:10601585-10601604	None:intergenic	30.0%
	TCAGAATTCTTAGCTAAAAG+AGG	-	chr6_4:10601700-10601719	None:intergenic	30.0%
	TTTCATGCCAAAAAATAAGG+TGG	-	chr6_4:10601932-10601951	None:intergenic	30.0%
!!	AGGTTATCAAAAGTATCTGA+TGG	+	chr6_4:10602246-10602265	Msa0976490:CDS	30.0%
	CTATTACTACTGTGATTCTT+TGG	+	chr6_4:10602385-10602404	Msa0976490:CDS	30.0%
!	TGATTGCAATTGGAGAATTT+TGG	+	chr6_4:10602424-10602443	Msa0976490:CDS	30.0%
!	GATTGCAATTGGAGAATTTT+GGG	+	chr6_4:10602425-10602444	Msa0976490:CDS	30.0%
!	ATTGCAATTGGAGAATTTTG+GGG	+	chr6_4:10602426-10602445	Msa0976490:CDS	30.0%
!!!	ACCAAAAACTTACTTTTTGG+CGG	-	chr6_4:10602552-10602571	None:intergenic	30.0%
!	AAGACTTTTCTGCAATATCA+TGG	-	chr6_4:10602821-10602840	None:intergenic	30.0%
	TTGTGCCTTTATATTATGGT+TGG	+	chr6_4:10602866-10602885	Msa0976490:intron	30.0%
!	CTTTATATTATGGTTGGTGT+CGG	+	chr6_4:10602872-10602891	Msa0976490:intron	30.0%
	CAGTAGATTGTTGTCAAATA+GGG	+	chr6_4:10602913-10602932	Msa0976490:intron	30.0%
	TATCTTATGGTTTCTTGCAA+TGG	+	chr6_4:10603208-10603227	Msa0976490:CDS	30.0%
	AAATTTAATGATTGCGGCAA+AGG	-	chr6_4:10603287-10603306	None:intergenic	30.0%
	ATCAGGAAGATAATCGTAAA+TGG	-	chr6_4:10603511-10603530	None:intergenic	30.0%
	TATTTCGTACTACGAAAAAC+AGG	+	chr6_4:10603718-10603737	Msa0976490:CDS	30.0%
!!	GAGTAAATTTTAATGCGTTG+AGG	+	chr6_4:10603932-10603951	Msa0976490:CDS	30.0%
!	AAAGATAGTGAGGATTTTGA+GGG	+	chr6_4:10603984-10604003	Msa0976490:CDS	30.0%
	ACTTCATCTTAGATATGAGA+TGG	+	chr6_4:10604026-10604045	Msa0976490:CDS	30.0%
	TAGATATGAGATGGATATGT+TGG	+	chr6_4:10604035-10604054	Msa0976490:CDS	30.0%
	TTCTTAGATATGCTTATCCT+TGG	+	chr6_4:10604198-10604217	Msa0976490:intron	30.0%
	TCATAAATTCCGAACTTAAG+AGG	+	chr6_4:10604234-10604253	Msa0976490:CDS	30.0%
	TGGAAATACATCAAATCTGA+AGG	-	chr6_4:10604531-10604550	None:intergenic	30.0%
!!	ATTTTGATACATTCAAGGAC+TGG	+	chr6_4:10604956-10604975	Msa0976490:intron	30.0%
	TTTCAAAAGGACTATACTAC+TGG	+	chr6_4:10605086-10605105	Msa0976490:CDS	30.0%
!	TTGGGATGAATTTTCCATTA+AGG	+	chr6_4:10605161-10605180	Msa0976490:CDS	30.0%
	ATGAGATTTCTTCACCTTAA+TGG	-	chr6_4:10605178-10605197	None:intergenic	30.0%
!	GGATGATAACTCTTCTTTTT+GGG	-	chr6_4:10605218-10605237	None:intergenic	30.0%
!	CTTCTTCTTTTGGTCTATTT+GGG	-	chr6_4:10605239-10605258	None:intergenic	30.0%
!	TCTTCTTCTTTTGGTCTATT+TGG	-	chr6_4:10605240-10605259	None:intergenic	30.0%
	AAGATAAGGTGATTCTCTAT+AGG	-	chr6_4:10605308-10605327	None:intergenic	30.0%
	AATCACCTTATCTTTGCTAA+AGG	+	chr6_4:10605314-10605333	Msa0976490:three_prime_UTR	30.0%
	GAGGACTATGAATAAATTAG+AGG	-	chr6_4:10605344-10605363	None:intergenic	30.0%
	CATTACTCCACATATTACAA+AGG	-	chr6_4:10605558-10605577	None:intergenic	30.0%
	CTTTGTAATATGTGGAGTAA+TGG	+	chr6_4:10605556-10605575	Msa0976490:intron	30.0%
	AAAAAGAGAGGAATTGGAGA+AGG	-	chr6_4:10601277-10601296	None:intergenic	35.0%
!	TCCTCTCTTTTTCTTTTCTC+CGG	+	chr6_4:10601285-10601304	Msa0976490:five_prime_UTR	35.0%
!!	TGTTGATGATGCTTGAAGTT+AGG	-	chr6_4:10602019-10602038	None:intergenic	35.0%
!!	ATGGGATTCAATGTTTTGAG+TGG	+	chr6_4:10602297-10602316	Msa0976490:CDS	35.0%
	ATGAAGTTGTGAAGTCTAAG+AGG	+	chr6_4:10602322-10602341	Msa0976490:CDS	35.0%
	GTTGTTCAGTTGATTGCAAT+TGG	+	chr6_4:10602414-10602433	Msa0976490:CDS	35.0%
	TTCATCTGTAGTTGTAGCAA+AGG	+	chr6_4:10602500-10602519	Msa0976490:CDS	35.0%
!	TCCGCCAAAAAGTAAGTTTT+TGG	+	chr6_4:10602548-10602567	Msa0976490:intron	35.0%
!	TGCAATATCATGGATTGCAA+CGG	-	chr6_4:10602811-10602830	None:intergenic	35.0%
	CGACACCAACCATAATATAA+AGG	-	chr6_4:10602874-10602893	None:intergenic	35.0%
	AACAATCTACTGCACTATCA+TGG	-	chr6_4:10602905-10602924	None:intergenic	35.0%
	GCAGTAGATTGTTGTCAAAT+AGG	+	chr6_4:10602912-10602931	Msa0976490:intron	35.0%
	GATAATGTCGCTGTCAAATA+GGG	+	chr6_4:10602978-10602997	Msa0976490:intron	35.0%
	CTTACATAGCAATCACATTG+TGG	+	chr6_4:10603001-10603020	Msa0976490:intron	35.0%
	GGTAACTAATGCTAAGTACT+TGG	-	chr6_4:10603266-10603285	None:intergenic	35.0%
	AATGACGATTTATCAAGCTC+TGG	-	chr6_4:10603419-10603438	None:intergenic	35.0%
	AGCTTGATAAATCGTCATTC+TGG	+	chr6_4:10603420-10603439	Msa0976490:CDS	35.0%
	GCTTGATAAATCGTCATTCT+GGG	+	chr6_4:10603421-10603440	Msa0976490:CDS	35.0%
	CAATAACAATGTGCAAACCT+TGG	-	chr6_4:10603452-10603471	None:intergenic	35.0%
	TATTAAAGGAACTACCACCT+AGG	+	chr6_4:10603636-10603655	Msa0976490:CDS	35.0%
	CTCAAGAGAAGAGTTGAATT+AGG	+	chr6_4:10603659-10603678	Msa0976490:CDS	35.0%
	AAATATCCGACCAACTAATC+GGG	-	chr6_4:10603703-10603722	None:intergenic	35.0%
	GAAATATCCGACCAACTAAT+CGG	-	chr6_4:10603704-10603723	None:intergenic	35.0%
	ACTTCTCAGATAGAACAACT+AGG	+	chr6_4:10603958-10603977	Msa0976490:CDS	35.0%
	AACTAGGTAGAAAGATAGTG+AGG	+	chr6_4:10603974-10603993	Msa0976490:CDS	35.0%
!	GAAAGATAGTGAGGATTTTG+AGG	+	chr6_4:10603983-10604002	Msa0976490:CDS	35.0%
!	CATATCTAAGATGAAGTACC+AGG	-	chr6_4:10604023-10604042	None:intergenic	35.0%
	TTAGATATGCTTATCCTTGG+TGG	+	chr6_4:10604201-10604220	Msa0976490:intron	35.0%
	ATTGCTGCTGGAGAAATATT+CGG	+	chr6_4:10604341-10604360	Msa0976490:CDS	35.0%
	GTAGTAGAACCGGAAAAAAA+AGG	-	chr6_4:10604479-10604498	None:intergenic	35.0%
!	TCCAACATATGATGGAAACA+TGG	+	chr6_4:10604614-10604633	Msa0976490:CDS	35.0%
	TTGCTAGATGTCTCTTTCTA+TGG	+	chr6_4:10604673-10604692	Msa0976490:intron	35.0%
	TTAGTCCTTAAATGTGTAGG+CGG	+	chr6_4:10604784-10604803	Msa0976490:intron	35.0%
	TTTAAGGACCGAACAAACTA+AGG	+	chr6_4:10604906-10604925	Msa0976490:intron	35.0%
!!	GTGTCTTTCCTTAGTTTGTT+CGG	-	chr6_4:10604917-10604936	None:intergenic	35.0%
	TCAGATTCCTAGGTTTCAAA+AGG	+	chr6_4:10605073-10605092	Msa0976490:intron	35.0%
!!!	GTATAGTCCTTTTGAAACCT+AGG	-	chr6_4:10605083-10605102	None:intergenic	35.0%
!	GGGATGATAACTCTTCTTTT+TGG	-	chr6_4:10605219-10605238	None:intergenic	35.0%
!	TGAGTTTTCCGATGAGATTC+CGG	-	chr6_4:10601320-10601339	None:intergenic	40.0%
	CTTCATTCTCCAACCTTATG+TGG	+	chr6_4:10601569-10601588	Msa0976490:five_prime_UTR	40.0%
	AAGTTGCATCCACATAAGGT+TGG	-	chr6_4:10601581-10601600	None:intergenic	40.0%
	ACTCAAAACATTGCCTTGTC+TGG	+	chr6_4:10601891-10601910	Msa0976490:intron	40.0%
	AAAACATTGCCTTGTCTGGT+GGG	+	chr6_4:10601895-10601914	Msa0976490:intron	40.0%
	GTGAAGCTCAAGCAAGTAAT+TGG	+	chr6_4:10602176-10602195	Msa0976490:five_prime_UTR	40.0%
	TGGAAAAAGTGATCACTGTG+AGG	+	chr6_4:10602266-10602285	Msa0976490:CDS	40.0%
	AAGTGATCACTGTGAGGAAA+TGG	+	chr6_4:10602272-10602291	Msa0976490:CDS	40.0%
	TCTTGGCGACTGAAACAATA+AGG	-	chr6_4:10602474-10602493	None:intergenic	40.0%
	CTACAGATGAAGATGCATCT+TGG	-	chr6_4:10602491-10602510	None:intergenic	40.0%
	TGTAGCAAAGGCTAGTGTTT+CGG	+	chr6_4:10602512-10602531	Msa0976490:CDS	40.0%
	ATGCATGAGCCCTTATATTG+TGG	+	chr6_4:10602778-10602797	Msa0976490:intron	40.0%
	GGACTGTGACCACAATATAA+GGG	-	chr6_4:10602790-10602809	None:intergenic	40.0%
	CTTACATAGCAATCGCATTG+TGG	+	chr6_4:10602936-10602955	Msa0976490:intron	40.0%
	CGATAATGTCGCTGTCAAAT+AGG	+	chr6_4:10602977-10602996	Msa0976490:intron	40.0%
	CTTATGGTTTCTTGCAATGG+AGG	+	chr6_4:10603211-10603230	Msa0976490:CDS	40.0%
	TATTCTGCAGATATGCGACA+TGG	+	chr6_4:10603355-10603374	Msa0976490:intron	40.0%
	ACAATGTGCAAACCTTGGAT+CGG	-	chr6_4:10603447-10603466	None:intergenic	40.0%
	AATATCCGACCAACTAATCG+GGG	-	chr6_4:10603702-10603721	None:intergenic	40.0%
	ATTGTTAGCAAGTCGAGCAT+CGG	-	chr6_4:10603878-10603897	None:intergenic	40.0%
!	CTCAGCTTTTGAATCTCGAT+AGG	-	chr6_4:10603907-10603926	None:intergenic	40.0%
!	CTAAGATGAAGTACCAGGAA+AGG	-	chr6_4:10604018-10604037	None:intergenic	40.0%
!!!	ATGGATATGTTGGCCTTTTC+TGG	+	chr6_4:10604045-10604064	Msa0976490:CDS	40.0%
	ATATGCTTATCCTTGGTGGA+AGG	+	chr6_4:10604205-10604224	Msa0976490:CDS	40.0%
	TTATCCTTGGTGGAAGGAAA+AGG	+	chr6_4:10604211-10604230	Msa0976490:CDS	40.0%
	TCCGAACTTAAGAGGAAAGA+CGG	+	chr6_4:10604242-10604261	Msa0976490:CDS	40.0%
	ACCGTCTTTCCTCTTAAGTT+CGG	-	chr6_4:10604246-10604265	None:intergenic	40.0%
	TTTATGTCCGTTAACACCTG+AGG	+	chr6_4:10604265-10604284	Msa0976490:CDS	40.0%
	AGTATTAGAGCAGTTTCCTC+AGG	-	chr6_4:10604284-10604303	None:intergenic	40.0%
!	TGCTCTAATACTGAAAGCAC+TGG	+	chr6_4:10604292-10604311	Msa0976490:CDS	40.0%
!	ATTCGGTGGAAAGAGAAGAA+TGG	+	chr6_4:10604358-10604377	Msa0976490:CDS	40.0%
	GCTACTTATCCTAACTTGGT+CGG	+	chr6_4:10604392-10604411	Msa0976490:intron	40.0%
	TTCTTTCTACCGACCAAGTT+AGG	-	chr6_4:10604404-10604423	None:intergenic	40.0%
!	CCATTTGTGATGAGTGGTTT+TGG	-	chr6_4:10604551-10604570	None:intergenic	40.0%
	CCAAAACCACTCATCACAAA+TGG	+	chr6_4:10604548-10604567	Msa0976490:CDS	40.0%
	GCCATGTTTCCATCATATGT+TGG	-	chr6_4:10604618-10604637	None:intergenic	40.0%
	AACATGGCTAAAGTCGTTGA+AGG	+	chr6_4:10604630-10604649	Msa0976490:CDS	40.0%
	TGAAGAAATCTCATGCCAAG+AGG	+	chr6_4:10605184-10605203	Msa0976490:CDS	40.0%
	AAATCTCATGCCAAGAGGAT+GGG	+	chr6_4:10605189-10605208	Msa0976490:CDS	40.0%
	CTCTATAGGTCATCTAGAAG+TGG	-	chr6_4:10605294-10605313	None:intergenic	40.0%
	GCATGCCTTTAGCAAAGATA+AGG	-	chr6_4:10605322-10605341	None:intergenic	40.0%
	GTGAAGAATAGCGTGAAAAG+AGG	-	chr6_4:10605363-10605382	None:intergenic	40.0%
	ATTCTTCACTACAATCGCGA+TGG	+	chr6_4:10605374-10605393	Msa0976490:three_prime_UTR	40.0%
	GCCGGAGAAAAGAAAAAGAG+AGG	-	chr6_4:10601289-10601308	None:intergenic	45.0%
	CAAAACATTGCCTTGTCTGG+TGG	+	chr6_4:10601894-10601913	Msa0976490:intron	45.0%
	AAACATTGCCTTGTCTGGTG+GGG	+	chr6_4:10601896-10601915	Msa0976490:intron	45.0%
	TCACTGTGAGGAAATGGAGA+TGG	+	chr6_4:10602278-10602297	Msa0976490:CDS	45.0%
	CACTGTGAGGAAATGGAGAT+GGG	+	chr6_4:10602279-10602298	Msa0976490:CDS	45.0%
!!	AGAGGTTTGTTGTAAAGCCG+AGG	+	chr6_4:10602340-10602359	Msa0976490:CDS	45.0%
	TAAAGCCGAGGATCAAAGTG+TGG	+	chr6_4:10602352-10602371	Msa0976490:CDS	45.0%
	TTGGGGTCCAAAGTTGTTGA+AGG	+	chr6_4:10602443-10602462	Msa0976490:CDS	45.0%
	TGGGGTCCAAAGTTGTTGAA+GGG	+	chr6_4:10602444-10602463	Msa0976490:CDS	45.0%
	GGCATACCCTTCAACAACTT+TGG	-	chr6_4:10602453-10602472	None:intergenic	45.0%
	AAAGGCTAGTGTTTCGGCTA+AGG	+	chr6_4:10602518-10602537	Msa0976490:CDS	45.0%
	AAACACGGACACGTTGACAT+CGG	+	chr6_4:10602633-10602652	Msa0976490:intron	45.0%
	CGGACTGTGACCACAATATA+AGG	-	chr6_4:10602791-10602810	None:intergenic	45.0%
	TCAACTCTTCTCTTGAGCCT+AGG	-	chr6_4:10603656-10603675	None:intergenic	45.0%
	ATATCCGACCAACTAATCGG+GGG	-	chr6_4:10603701-10603720	None:intergenic	45.0%
	CGCAGATTCTTCCTCTCATA+CGG	+	chr6_4:10603824-10603843	Msa0976490:intron	45.0%
	TCCTCTCATACGGAAACACA+AGG	+	chr6_4:10603834-10603853	Msa0976490:CDS	45.0%
	ACCTTGTGTTTCCGTATGAG+AGG	-	chr6_4:10603838-10603857	None:intergenic	45.0%
!!	GTCGAGCATCGGTCTTATTT+AGG	-	chr6_4:10603867-10603886	None:intergenic	45.0%
!!	GATGCTCGACTTGCTAACAA+TGG	+	chr6_4:10603877-10603896	Msa0976490:CDS	45.0%
!!	GTGAGGATTTTGAGGGAAAG+AGG	+	chr6_4:10603991-10604010	Msa0976490:CDS	45.0%
	TTGAGGAACTCACACGAATG+AGG	+	chr6_4:10604097-10604116	Msa0976490:CDS	45.0%
!	ATGACCTTTTCCTTCCACCA+AGG	-	chr6_4:10604218-10604237	None:intergenic	45.0%
	GCAGTTTCCTCAGGTGTTAA+CGG	-	chr6_4:10604275-10604294	None:intergenic	45.0%
	GCGAGCTACTTATCCTAACT+TGG	+	chr6_4:10604388-10604407	Msa0976490:CDS	45.0%
!	TTTTCCGGTTCTACTACCAC+AGG	+	chr6_4:10604482-10604501	Msa0976490:intron	45.0%
	CTTACCTGTGGTAGTAGAAC+CGG	-	chr6_4:10604489-10604508	None:intergenic	45.0%
	TCTACTACCACAGGTAAGGA+AGG	+	chr6_4:10604491-10604510	Msa0976490:intron	45.0%
	AGAGTTTCCTTCCTTACCTG+TGG	-	chr6_4:10604501-10604520	None:intergenic	45.0%
	ATGCAGCCATTTGTGATGAG+TGG	-	chr6_4:10604557-10604576	None:intergenic	45.0%
	CTCATCACAAATGGCTGCAT+TGG	+	chr6_4:10604557-10604576	Msa0976490:CDS	45.0%
	AAGTCGTTGAAGGCCATAGA+AGG	+	chr6_4:10604640-10604659	Msa0976490:CDS	45.0%
	TGACACCGCCTACACATTTA+AGG	-	chr6_4:10604792-10604811	None:intergenic	45.0%
	GAAATCTCATGCCAAGAGGA+TGG	+	chr6_4:10605188-10605207	Msa0976490:CDS	45.0%
!!!	TTTTGGGTTTCCCATCCTCT+TGG	-	chr6_4:10605202-10605221	None:intergenic	45.0%
	GAAGTGGCAAGCATTCATGA+GGG	-	chr6_4:10605278-10605297	None:intergenic	45.0%
	AGAAGTGGCAAGCATTCATG+AGG	-	chr6_4:10605279-10605298	None:intergenic	45.0%
!!!	TTTATTTTTTGTATTTTTTA+AGG	+	chr6_4:10602127-10602146	Msa0976490:intron	5.0%
!!!	GTTTTTTTTATAAAAAAAAA+AGG	-	chr6_4:10603078-10603097	None:intergenic	5.0%
	GATCTTCGCCGGAATCTCAT+CGG	+	chr6_4:10601309-10601328	Msa0976490:five_prime_UTR	50.0%
	GAGAATGAAGACACCCCAGA+AGG	-	chr6_4:10601559-10601578	None:intergenic	50.0%
	AAATTCCACCCCACCAGACA+AGG	-	chr6_4:10601907-10601926	None:intergenic	50.0%
	GCCATCCACACTTTGATCCT+CGG	-	chr6_4:10602360-10602379	None:intergenic	50.0%
	ACTCTTCTCTTGAGCCTAGG+TGG	-	chr6_4:10603653-10603672	None:intergenic	50.0%
	ACTCATTGCCCCCGATTAGT+TGG	+	chr6_4:10603690-10603709	Msa0976490:CDS	50.0%
!	ATTGCCCCCGATTAGTTGGT+CGG	+	chr6_4:10603694-10603713	Msa0976490:CDS	50.0%
	TCCATGAGTGCAGCCAGAAA+AGG	-	chr6_4:10604061-10604080	None:intergenic	50.0%
	TCATGGATGTGATAGCAGCG+AGG	+	chr6_4:10604074-10604093	Msa0976490:CDS	50.0%
	ATGTGATAGCAGCGAGGTTG+AGG	+	chr6_4:10604080-10604099	Msa0976490:CDS	50.0%
	GCTGCTGGAGAAATATTCGG+TGG	+	chr6_4:10604344-10604363	Msa0976490:CDS	50.0%
	CGGTTCTACTACCACAGGTA+AGG	+	chr6_4:10604487-10604506	Msa0976490:intron	50.0%
	GGTAAGGAAGGAAACTCTGC+TGG	+	chr6_4:10604503-10604522	Msa0976490:intron	50.0%
	CATTCAAGGACTGGAGTGAC+AGG	+	chr6_4:10604965-10604984	Msa0976490:intron	50.0%
	TGGCAAGCATTCATGAGGGT+TGG	-	chr6_4:10605274-10605293	None:intergenic	50.0%
!	TTTTCTCCGGCGATCTTCGC+CGG	+	chr6_4:10601298-10601317	Msa0976490:five_prime_UTR	55.0%
	GCCGAGGATCAAAGTGTGGA+TGG	+	chr6_4:10602356-10602375	Msa0976490:CDS	55.0%
	GAGGGAAAGAGGACCTTTCC+TGG	+	chr6_4:10604002-10604021	Msa0976490:CDS	55.0%
!!!	GCCTTTTCTGGCTGCACTCA+TGG	+	chr6_4:10604057-10604076	Msa0976490:CDS	55.0%
	GAGATTCCGGCGAAGATCGC+CGG	-	chr6_4:10601307-10601326	None:intergenic	60.0%
	CATTGCCTTGTCTGGTGGGG+TGG	+	chr6_4:10601899-10601918	Msa0976490:intron	60.0%
	CGTCATTCTGGGCCGATCCA+AGG	+	chr6_4:10603432-10603451	Msa0976490:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	10601270	10605735	10601270	ID=Msa0976490;Name=Msa0976490
chr6_4	mRNA	10601270	10605735	10601270	ID=Msa0976490-mRNA-1;Parent=Msa0976490;Name=Msa0976490-mRNA-1;_AED=0.15;_eAED=0.15;_QI=420\|1\|1\|1\|0.77\|0.6\|10\|308\|511
chr6_4	exon	10601270	10601604	10601270	ID=Msa0976490-mRNA-1:exon:3841;Parent=Msa0976490-mRNA-1
chr6_4	exon	10602149	10602558	10602149	ID=Msa0976490-mRNA-1:exon:3842;Parent=Msa0976490-mRNA-1
chr6_4	exon	10603188	10603255	10603188	ID=Msa0976490-mRNA-1:exon:3843;Parent=Msa0976490-mRNA-1
chr6_4	exon	10603365	10603453	10603365	ID=Msa0976490-mRNA-1:exon:3844;Parent=Msa0976490-mRNA-1
chr6_4	exon	10603574	10603739	10603574	ID=Msa0976490-mRNA-1:exon:3845;Parent=Msa0976490-mRNA-1
chr6_4	exon	10603829	10604118	10603829	ID=Msa0976490-mRNA-1:exon:3846;Parent=Msa0976490-mRNA-1
chr6_4	exon	10604205	10604409	10604205	ID=Msa0976490-mRNA-1:exon:3847;Parent=Msa0976490-mRNA-1
chr6_4	exon	10604504	10604661	10604504	ID=Msa0976490-mRNA-1:exon:3848;Parent=Msa0976490-mRNA-1
chr6_4	exon	10605077	10605443	10605077	ID=Msa0976490-mRNA-1:exon:3849;Parent=Msa0976490-mRNA-1
chr6_4	exon	10605560	10605735	10605560	ID=Msa0976490-mRNA-1:exon:3850;Parent=Msa0976490-mRNA-1
chr6_4	five_prime_UTR	10601270	10601604	10601270	ID=Msa0976490-mRNA-1:five_prime_utr;Parent=Msa0976490-mRNA-1
chr6_4	five_prime_UTR	10602149	10602233	10602149	ID=Msa0976490-mRNA-1:five_prime_utr;Parent=Msa0976490-mRNA-1
chr6_4	CDS	10602234	10602558	10602234	ID=Msa0976490-mRNA-1:cds;Parent=Msa0976490-mRNA-1
chr6_4	CDS	10603188	10603255	10603188	ID=Msa0976490-mRNA-1:cds;Parent=Msa0976490-mRNA-1
chr6_4	CDS	10603365	10603453	10603365	ID=Msa0976490-mRNA-1:cds;Parent=Msa0976490-mRNA-1
chr6_4	CDS	10603574	10603739	10603574	ID=Msa0976490-mRNA-1:cds;Parent=Msa0976490-mRNA-1
chr6_4	CDS	10603829	10604118	10603829	ID=Msa0976490-mRNA-1:cds;Parent=Msa0976490-mRNA-1
chr6_4	CDS	10604205	10604409	10604205	ID=Msa0976490-mRNA-1:cds;Parent=Msa0976490-mRNA-1
chr6_4	CDS	10604504	10604661	10604504	ID=Msa0976490-mRNA-1:cds;Parent=Msa0976490-mRNA-1
chr6_4	CDS	10605077	10605311	10605077	ID=Msa0976490-mRNA-1:cds;Parent=Msa0976490-mRNA-1
chr6_4	three_prime_UTR	10605312	10605443	10605312	ID=Msa0976490-mRNA-1:three_prime_utr;Parent=Msa0976490-mRNA-1
chr6_4	three_prime_UTR	10605560	10605735	10605560	ID=Msa0976490-mRNA-1:three_prime_utr;Parent=Msa0976490-mRNA-1

Gene Sequence

>Msa0976490

ATGATGTTGTTGAGGTTATCAAAAGTATCTGATGGAAAAAGTGATCACTGTGAGGAAATGGAGATGGGATTCAATGTTTTGAGTGGTGATGAAGTTGTGAAGTCTAAGAGGTTTGTTGTAAAGCCGAGGATCAAAGTGTGGATGGCACGCGCTATTACTACTGTGATTCTTTGGACTAGTGTTGTTCAGTTGATTGCAATTGGAGAATTTTGGGGTCCAAAGTTGTTGAAGGGTATGCCTTATTGTTTCAGTCGCCAAGATGCATCTTCATCTGTAGTTGTAGCAAAGGCTAGTGTTTCGGCTAAGGTTGCGCTTCCGCCAAAAAGGATTTATAAGAATAATGGTTATCTTATGGTTTCTTGCAATGGAGGACTCAATCAAATGAGAGCAGCAATATGCGACATGGTTGCTATTGCAAGACATTTAAATGTCACTCTCATAGTTCCAGAGCTTGATAAATCGTCATTCTGGGCCGATCCAAGTGAGTTCCAAGACATATTTGATGTAGATAATTTCATTGCATCTTTGAGAGATGAAGTTAGAATATTAAAGGAACTACCACCTAGGCTCAAGAGAAGAGTTGAATTAGGATTGTCTTACTCATTGCCCCCGATTAGTTGGTCGGATATTTCGTACTACGAAAAACAGATTCTTCCTCTCATACGGAAACACAAGGTTGTGCACCTAAATAAGACCGATGCTCGACTTGCTAACAATGGATTGCCTATCGAGATTCAAAAGCTGAGATGCCGAGTAAATTTTAATGCGTTGAGGTTTACTTCTCAGATAGAACAACTAGGTAGAAAGATAGTGAGGATTTTGAGGGAAAGAGGACCTTTCCTGGTACTTCATCTTAGATATGAGATGGATATGTTGGCCTTTTCTGGCTGCACTCATGGATGTGATAGCAGCGAGGTTGAGGAACTCACACGAATGAGATATGCTTATCCTTGGTGGAAGGAAAAGGTCATAAATTCCGAACTTAAGAGGAAAGACGGTTTATGTCCGTTAACACCTGAGGAAACTGCTCTAATACTGAAAGCACTGGACATAGATCAAAATATTCAAATTTATATTGCTGCTGGAGAAATATTCGGTGGAAAGAGAAGAATGGCACGTTTGCGAGCTACTTATCCTAACTTGGTAAGGAAGGAAACTCTGCTGGAACCTTCAGATTTGATGTATTTCCAAAACCACTCATCACAAATGGCTGCATTGGATTATCTTGTGTCTCTAGAAAGTGATATATTTGTTCCAACATATGATGGAAACATGGCTAAAGTCGTTGAAGGCCATAGAAGATTCCTAGGTTTCAAAAGGACTATACTACTGGATAGAAAGCATCTGATGCCCCTCATAGATCAATATATGAATAAGTCATTAAGTTGGGATGAATTTTCCATTAAGGTGAAGAAATCTCATGCCAAGAGGATGGGAAACCCAAAAAGAAGAGTTATCATCCCAAATAGACCAAAAGAAGAAGACTATTTTTATTCCAACCCTCATGAATGCTTGCCACTTCTAGATGACCTATAG

Protein sequence

>Msa0976490

MMLLRLSKVSDGKSDHCEEMEMGFNVLSGDEVVKSKRFVVKPRIKVWMARAITTVILWTSVVQLIAIGEFWGPKLLKGMPYCFSRQDASSSVVVAKASVSAKVALPPKRIYKNNGYLMVSCNGGLNQMRAAICDMVAIARHLNVTLIVPELDKSSFWADPSEFQDIFDVDNFIASLRDEVRILKELPPRLKRRVELGLSYSLPPISWSDISYYEKQILPLIRKHKVVHLNKTDARLANNGLPIEIQKLRCRVNFNALRFTSQIEQLGRKIVRILRERGPFLVLHLRYEMDMLAFSGCTHGCDSSEVEELTRMRYAYPWWKEKVINSELKRKDGLCPLTPEETALILKALDIDQNIQIYIAAGEIFGGKRRMARLRATYPNLVRKETLLEPSDLMYFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRFLGFKRTILLDRKHLMPLIDQYMNKSLSWDEFSIKVKKSHAKRMGNPKRRVIIPNRPKEEDYFYSNPHECLPLLDDL*