AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0931550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931550 MtrunA17_Chr2g0322321 97.292 480 13 0 1 480 1 480 0.0 958
Msa0931550 MtrunA17_Chr1g0154381 40.741 459 266 4 9 464 44 499 2.51e-123 370
Msa0931550 MtrunA17_Chr3g0141271 39.451 474 271 7 20 480 88 558 2.56e-116 353
Msa0931550 MtrunA17_Chr1g0162571 39.030 474 268 8 22 479 14 482 2.08e-107 327
Msa0931550 MtrunA17_Chr4g0034141 36.910 466 280 7 12 469 1 460 2.34e-103 317
Msa0931550 MtrunA17_Chr1g0162591 38.843 242 133 4 250 479 3 241 1.66e-49 169
Msa0931550 MtrunA17_Chr1g0162581 36.134 238 140 5 22 252 18 250 3.25e-43 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931550 AT4G15440.1 60.677 384 147 3 101 480 1 384 4.82e-170 484
Msa0931550 AT5G42650.1 41.703 458 261 3 10 464 39 493 3.46e-125 375

Find 151 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTACCTGCACACTGTTTAT+TGG 0.128108 6_2:+81085123 None:intergenic
CAGACAGGTTAGATTATTTC+TGG 0.141000 6_2:-81089259 Msa0931550:CDS
TTGAATTTACGGGAAATATT+AGG 0.183729 6_2:-81089028 Msa0931550:CDS
GTTATGCTCTCAATCAATTT+TGG 0.194984 6_2:+81085523 None:intergenic
CGTCGGTATGATTTAATTAA+AGG 0.200247 6_2:-81085055 Msa0931550:CDS
AACTATTTGTATTGGTCTAA+TGG 0.210824 6_2:-81085172 Msa0931550:CDS
AAGTAAGTTAAGTAAGAAAA+AGG 0.224562 6_2:-81084825 Msa0931550:three_prime_UTR
GGAGCCTGATTCGGCGATTT+TGG 0.224744 6_2:+81086014 None:intergenic
TTTCTCTCACCTCTTTGATA+TGG 0.280521 6_2:-81089099 Msa0931550:CDS
TGTTCCTAGTGTTGAATTTA+CGG 0.291492 6_2:-81089039 Msa0931550:CDS
TCAAGAACTGCAATAATATT+AGG 0.294757 6_2:+81089131 None:intergenic
TCGGTGGAGGTCACACTTTA+TGG 0.299964 6_2:+81089426 None:intergenic
TGAAGCAAAGTTCAAGCATA+TGG 0.300137 6_2:-81086191 Msa0931550:CDS
CCACCGGTTCCACTTCAATT+TGG 0.305118 6_2:-81085367 Msa0931550:CDS
AGAAGGCCAAATGAAGAGTT+AGG 0.305897 6_2:-81085006 Msa0931550:exon
GCTACCGATCCGGCAGATTC+CGG 0.308018 6_2:-81089315 Msa0931550:CDS
TGAATTTACGGGAAATATTA+GGG 0.330709 6_2:-81089027 Msa0931550:CDS
GACGGTGGTGGTATCGGTGG+TGG 0.334671 6_2:+81089371 None:intergenic
ACTTTGCTTCAAAATGTTCA+TGG 0.334862 6_2:+81086203 None:intergenic
ACTATTTGTATTGGTCTAAT+GGG 0.337855 6_2:-81085171 Msa0931550:CDS
TAGACAGTGTTGCTTCAATT+TGG 0.347494 6_2:+81086130 None:intergenic
TCCAGGTTTGATATCAGTTC+TGG 0.348706 6_2:+81086165 None:intergenic
AGCTCCGTTGGCCTTGCTTT+CGG 0.351852 6_2:+81089335 None:intergenic
GTCGGTATGATTTAATTAAA+GGG 0.360322 6_2:-81085054 Msa0931550:CDS
CGTTCCGGTTTAAATTGTTC+TGG 0.360380 6_2:+81085226 None:intergenic
ACCAACCCTAACTCTTCATT+TGG 0.361089 6_2:+81085000 None:intergenic
TTCTCTTTAGTGAACCGTTC+CGG 0.366646 6_2:+81085211 None:intergenic
AATGGCCATCCGTGGCTTCC+CGG 0.370701 6_2:+81089296 None:intergenic
GTTCCTAGTGTTGAATTTAC+GGG 0.375540 6_2:-81089038 Msa0931550:CDS
GTGTTGGGTTTCAACTCATA+TGG 0.377271 6_2:-81085565 Msa0931550:CDS
GATCCCAAAATCGCCGAATC+AGG 0.380571 6_2:-81086018 Msa0931550:CDS
GAGAAAGGCGGTTCAACTCT+TGG 0.381113 6_2:-81085454 Msa0931550:CDS
ATAATCTAACCTGTCTGATA+AGG 0.382700 6_2:+81089265 None:intergenic
TTGCTTTCGGTGGAGTTGCT+AGG 0.382888 6_2:+81089348 None:intergenic
AGTTATTGAACTATTTGTAT+TGG 0.390965 6_2:-81085180 Msa0931550:CDS
GAACCGGTGGGTTCATTCGC+AGG 0.400858 6_2:+81085380 None:intergenic
CTACCGATCCGGCAGATTCC+GGG 0.403146 6_2:-81089314 Msa0931550:CDS
AGAGTTGGAACTAATAAATT+CGG 0.427670 6_2:-81085416 Msa0931550:CDS
AGAAAGGCGGTTCAACTCTT+GGG 0.427891 6_2:-81085453 Msa0931550:CDS
GGAAAATTTCTTCGAGTGGT+TGG 0.429611 6_2:+81085932 None:intergenic
TGGTCTAATGGGCCACAAAC+TGG 0.430261 6_2:-81085160 Msa0931550:CDS
GAGAAGAAGAGAAGAGAGTT+CGG 0.441579 6_2:+81089407 None:intergenic
TAATCTAACCTGTCTGATAA+GGG 0.445035 6_2:+81089266 None:intergenic
TCTTCATTTGGCCTTCTGTA+AGG 0.448353 6_2:+81085012 None:intergenic
GGATTCACGTTGGTGAAGAA+AGG 0.453342 6_2:+81089152 None:intergenic
TCTCAACTTCTCTTGCAAAC+CGG 0.454849 6_2:+81085489 None:intergenic
CATAAGGGTAAGAGAAGGAA+TGG 0.459434 6_2:+81085908 None:intergenic
GGCCTTCTGTAAGGCAGTAA+TGG 0.459616 6_2:+81085021 None:intergenic
GACAAAAGAGATGTTCTAGT+TGG 0.460373 6_2:-81089068 Msa0931550:CDS
GAAGCAAAGTTCAAGCATAT+GGG 0.463109 6_2:-81086190 Msa0931550:CDS
GCTAGGGACGGTGGTGGTAT+CGG 0.463818 6_2:+81089365 None:intergenic
TGCTTTCGGTGGAGTTGCTA+GGG 0.468309 6_2:+81089349 None:intergenic
CAATAAACAGTGTGCAGGTA+AGG 0.471780 6_2:-81085122 Msa0931550:CDS
TGAACCAGAACAATTTAAAC+CGG 0.473665 6_2:-81085230 Msa0931550:CDS
ATCAAGGGAAGGATCGGCTC+TGG 0.474506 6_2:+81086038 None:intergenic
TACCCTTATGCTCTTGTCAG+TGG 0.477774 6_2:-81085895 Msa0931550:CDS
CGACCAAATTGAAGTGGAAC+CGG 0.478711 6_2:+81085364 None:intergenic
CTCCGCGTTCAATGTGAAGA+AGG 0.479052 6_2:-81085308 Msa0931550:CDS
GTTTGACTCGTTAAAAGAGT+TGG 0.480961 6_2:-81085431 Msa0931550:CDS
TCTCCACTGACAAGAGCATA+AGG 0.482167 6_2:+81085892 None:intergenic
GAGCATGGAGGAGCCTGATT+CGG 0.489708 6_2:+81086005 None:intergenic
AGAAAGGAAGCAAGAGAGAA+AGG 0.493653 6_2:-81085469 Msa0931550:CDS
GGCCAACGGAGCTACCGATC+CGG 0.494027 6_2:-81089325 Msa0931550:CDS
GCTCCTCCATGCTCAACAAA+TGG 0.496661 6_2:-81085996 Msa0931550:CDS
CACTGTTTATTGGACACAGT+TGG 0.496951 6_2:+81085133 None:intergenic
CTCTGGCAAGTACTTTGCTT+AGG 0.499755 6_2:+81086055 None:intergenic
TGCGAGCCATTTGTTGAGCA+TGG 0.501636 6_2:+81085990 None:intergenic
CGTGGCTTCCCGGAATCTGC+CGG 0.503229 6_2:+81089306 None:intergenic
TGCTAGGTCCCTTATCAGAC+AGG 0.504652 6_2:-81089274 Msa0931550:CDS
TGGGTTTCAACTCATATGGT+GGG 0.510542 6_2:-81085561 Msa0931550:CDS
TGCCGGATCGGTAGCTCCGT+TGG 0.513185 6_2:+81089323 None:intergenic
TTCGGTGGAGTTGCTAGGGA+CGG 0.513266 6_2:+81089353 None:intergenic
TTTACGGGAAATATTAGGGT+TGG 0.514210 6_2:-81089023 Msa0931550:CDS
ACGGTGGTGGTATCGGTGGT+GGG 0.518078 6_2:+81089372 None:intergenic
AATTTCTTCGAGTGGTTGGA+TGG 0.518200 6_2:+81085936 None:intergenic
CTGGCTCGACCAAATTGAAG+TGG 0.519831 6_2:+81085358 None:intergenic
GATTCACGTTGGTGAAGAAA+GGG 0.521739 6_2:+81089153 None:intergenic
AGAAGGGTGAGTTATTATGT+GGG 0.524535 6_2:-81085291 Msa0931550:CDS
AACTTCTCTTGCAAACCGGT+TGG 0.526019 6_2:+81085493 None:intergenic
GTGAACAGAAATTTCTGCAG+TGG 0.528197 6_2:+81086081 None:intergenic
TTGGGTTTCAACTCATATGG+TGG 0.534485 6_2:-81085562 Msa0931550:CDS
TTTGCAAGAGAAGTTGAGAA+AGG 0.535515 6_2:-81085485 Msa0931550:CDS
TCCGTTGGCCTTGCTTTCGG+TGG 0.541082 6_2:+81089338 None:intergenic
TATGATTTAATTAAAGGGGA+TGG 0.541669 6_2:-81085049 Msa0931550:CDS
CACAATCAACGCAGCGGTGA+AGG 0.542968 6_2:+81085090 None:intergenic
AGCCACGGATGGCCATTGCT+AGG 0.543267 6_2:-81089290 Msa0931550:CDS
CTTCCCGGAATCTGCCGGAT+CGG 0.543367 6_2:+81089311 None:intergenic
AGGGACGGTGGTGGTATCGG+TGG 0.543609 6_2:+81089368 None:intergenic
TTCTGAACCTCAACATGCTA+AGG 0.543924 6_2:-81088985 Msa0931550:intron
TCTGGTTCATCAAACACGAC+CGG 0.544589 6_2:+81085244 None:intergenic
AAGAGAAGAGAGTTCGGTGG+AGG 0.545388 6_2:+81089413 None:intergenic
AAGAAGAGAAGAGAGTTCGG+TGG 0.545911 6_2:+81089410 None:intergenic
AAGAAGGGTGAGTTATTATG+TGG 0.548271 6_2:-81085292 Msa0931550:CDS
GTTGTTTAATGAAGTTGTAG+AGG 0.549200 6_2:+81085860 None:intergenic
CTTCACCGCTGCGTTGATTG+TGG 0.549965 6_2:-81085089 Msa0931550:CDS
TGGAGGAAAATTTCTTCGAG+TGG 0.550646 6_2:+81085928 None:intergenic
TGAACAGAAATTTCTGCAGT+GGG 0.551534 6_2:+81086082 None:intergenic
GGAGTTGCTAGGGACGGTGG+TGG 0.552416 6_2:+81089359 None:intergenic
TTTGGGATCAAGGGAAGGAT+CGG 0.552953 6_2:+81086032 None:intergenic
ACCAGAACTGATATCAAACC+TGG 0.557853 6_2:-81086166 Msa0931550:CDS
GCCAAATGAAGAGTTAGGGT+TGG 0.558819 6_2:-81085001 Msa0931550:exon
GGTTTCAGAAGCTTGTAATG+AGG 0.560783 6_2:-81085270 Msa0931550:CDS
TTTCCCGTAAATTCAACACT+AGG 0.562457 6_2:+81089035 None:intergenic
CGGCAGATTCCGGGAAGCCA+CGG 0.563660 6_2:-81089305 Msa0931550:CDS
CTCCACTGACAAGAGCATAA+GGG 0.568207 6_2:+81085893 None:intergenic
AACCGGTGGGTTCATTCGCA+GGG 0.568675 6_2:+81085381 None:intergenic
TTCCATTACTGCCTTACAGA+AGG 0.570694 6_2:-81085023 Msa0931550:CDS
ATCAAGTTCAAGTATAAGGA+AGG 0.571397 6_2:+81084761 Msa0931540:three_prime_UTR
GTTGGAACTAATAAATTCGG+TGG 0.571940 6_2:-81085413 Msa0931550:CDS
GAACGGTTCACTAAAGAGAA+AGG 0.572715 6_2:-81085208 Msa0931550:CDS
AGTGGTACCTTAGCATGTTG+AGG 0.575238 6_2:+81088978 None:intergenic
GAAGGCCAAATGAAGAGTTA+GGG 0.575465 6_2:-81085005 Msa0931550:exon
GTGTCCAATAAACAGTGTGC+AGG 0.576661 6_2:-81085127 Msa0931550:CDS
TCGGTATGATTTAATTAAAG+GGG 0.578026 6_2:-81085053 Msa0931550:CDS
AGGGAACGTGGGTGGAACAT+TGG 0.578719 6_2:+81089172 None:intergenic
CTGGTTCATCAAACACGACC+GGG 0.580825 6_2:+81085245 None:intergenic
AAGAGCATAAGGGTAAGAGA+AGG 0.584245 6_2:+81085903 None:intergenic
ACAGTTGGCGAACCAGTTTG+TGG 0.585878 6_2:+81085148 None:intergenic
AAGGGTAAGAGAAGGAATGG+AGG 0.585930 6_2:+81085911 None:intergenic
CTTCTACCGACTGTGAGTGT+TGG 0.586862 6_2:-81085961 Msa0931550:CDS
GTTTCAGAAGCTTGTAATGA+GGG 0.587067 6_2:-81085269 Msa0931550:CDS
TAGCAACTCCACCGAAAGCA+AGG 0.588271 6_2:-81089346 Msa0931550:CDS
GGTGGAGTTGCTAGGGACGG+TGG 0.594020 6_2:+81089356 None:intergenic
AGTAACTTTACTATCTATCA+CGG 0.603195 6_2:-81089568 Msa0931550:five_prime_UTR
TCTGATAAGGGACCTAGCAA+TGG 0.603682 6_2:+81089278 None:intergenic
AGATTCCGGGAAGCCACGGA+TGG 0.603980 6_2:-81089301 Msa0931550:CDS
TTGTGGCACACTTGTTACGT+CGG 0.612333 6_2:-81085072 Msa0931550:CDS
TATCGGTGGTGGGAGTGACA+TGG 0.613140 6_2:+81089382 None:intergenic
CCAAATTGAAGTGGAACCGG+TGG 0.613875 6_2:+81085367 None:intergenic
TCCGCGTTCAATGTGAAGAA+GGG 0.615898 6_2:-81085307 Msa0931550:CDS
TCCACCGAAAGCAAGGCCAA+CGG 0.616945 6_2:-81089339 Msa0931550:CDS
CAGAACAATTTAAACCGGAA+CGG 0.632046 6_2:-81085225 Msa0931550:CDS
ACGTGGGTGGAACATTGGTA+CGG 0.634090 6_2:+81089177 None:intergenic
GACCTAGCAATGGCCATCCG+TGG 0.636484 6_2:+81089288 None:intergenic
GTGAAGAAAGGGAACGTGGG+TGG 0.642657 6_2:+81089164 None:intergenic
CAACAAGGTCCATATCAAAG+AGG 0.642799 6_2:+81089090 None:intergenic
AATAATATTAGGATTCACGT+TGG 0.648803 6_2:+81089142 None:intergenic
GTTGGTGAAGAAAGGGAACG+TGG 0.649752 6_2:+81089160 None:intergenic
AACCCTGCGAATGAACCCAC+CGG 0.654342 6_2:-81085383 Msa0931550:CDS
ATACAAATAGTTCAATAACT+CGG 0.658718 6_2:+81085183 None:intergenic
ACCCTTCTTCACATTGAACG+CGG 0.658842 6_2:+81085306 None:intergenic
TACAACTTCATTAAACAACA+TGG 0.659594 6_2:-81085856 Msa0931550:intron
GAAGCTTGTAATGAGGGACC+CGG 0.667156 6_2:-81085263 Msa0931550:CDS
CAAATTGAAGTGGAACCGGT+GGG 0.672914 6_2:+81085368 None:intergenic
TTGATTGAGAGCATAACGAA+CGG 0.681802 6_2:-81085517 Msa0931550:CDS
ATGGTGCCAACACTCACAGT+CGG 0.703580 6_2:+81085955 None:intergenic
AAGGAAGCAAGAGAGAAAGG+CGG 0.704473 6_2:-81085466 Msa0931550:CDS
GAGCCATTTGTTGAGCATGG+AGG 0.708844 6_2:+81085993 None:intergenic
TTGGTGAAGAAAGGGAACGT+GGG 0.709718 6_2:+81089161 None:intergenic
GTGTGCCACAATCAACGCAG+CGG 0.735438 6_2:+81085084 None:intergenic
GAACAGAAATTTCTGCAGTG+GGG 0.775291 6_2:+81086083 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAACTATTTTTTTTATA+AGG - chr6_2:81086196-81086215 Msa0931550:CDS 10.0%
!! TTTACTTGATTTATTATTTA+AGG - chr6_2:81086563-81086582 Msa0931550:intron 10.0%
!!! TTTCTAGTTAAAAAATTTAA+CGG - chr6_2:81086620-81086639 Msa0931550:intron 10.0%
!!! ATTATTTATTGTACTTTTTT+CGG - chr6_2:81086691-81086710 Msa0931550:intron 10.0%
!!! TATTATATTTTGACAAAAAT+TGG - chr6_2:81086785-81086804 Msa0931550:intron 10.0%
!! CTTTCATAAATTAAATTAAA+TGG - chr6_2:81087131-81087150 Msa0931550:intron 10.0%
!!! ATTTCAATAAAATTTTTGTT+TGG + chr6_2:81087192-81087211 None:intergenic 10.0%
!!! ATAAGTCTATGATTTTTATT+AGG - chr6_2:81085956-81085975 Msa0931550:CDS 15.0%
!! TATCAAAAAAACATTATGTA+CGG - chr6_2:81086020-81086039 Msa0931550:CDS 15.0%
!! TTAAAATGATATGTTAATAG+TGG + chr6_2:81086327-81086346 None:intergenic 15.0%
!! GACTATTTATTATAAATTCA+AGG - chr6_2:81086423-81086442 Msa0931550:intron 15.0%
!!! TTATTTTCAAATTTTAGTGA+TGG - chr6_2:81086831-81086850 Msa0931550:intron 15.0%
!!! TATTTTCAAATTTTAGTGAT+GGG - chr6_2:81086832-81086851 Msa0931550:intron 15.0%
!!! GATTTTAAAATAATTTGTAG+GGG + chr6_2:81086894-81086913 None:intergenic 15.0%
!!! GGATTTTAAAATAATTTGTA+GGG + chr6_2:81086895-81086914 None:intergenic 15.0%
!!! TGGATTTTAAAATAATTTGT+AGG + chr6_2:81086896-81086915 None:intergenic 15.0%
!!! AATGTTTTTACATTACAATA+CGG + chr6_2:81087304-81087323 None:intergenic 15.0%
!! ATGATTAATAAGTAAACTAA+AGG - chr6_2:81087345-81087364 Msa0931550:intron 15.0%
!!! AATTGATAGAAAGATTTTTT+TGG - chr6_2:81087687-81087706 Msa0931550:intron 15.0%
!!! TAATAAACAATATTGATAAC+AGG - chr6_2:81088752-81088771 Msa0931550:intron 15.0%
!!! TCGTAATGTTAATTTTTTTG+AGG - chr6_2:81084819-81084838 Msa0931550:three_prime_UTR 20.0%
!! TTTCTCCTCTATTAAAAAAA+AGG - chr6_2:81084935-81084954 Msa0931550:three_prime_UTR 20.0%
!!! TTTTGCCTTTTTTTTAATAG+AGG + chr6_2:81084943-81084962 None:intergenic 20.0%
!!! TTTATGGTTATGTTTTGATT+TGG + chr6_2:81084971-81084990 None:intergenic 20.0%
!! ATCAAAAGAAATAAGAAAGT+AGG + chr6_2:81085467-81085486 None:intergenic 20.0%
!! AAAATGACAAGGAAAATTTA+TGG + chr6_2:81085602-81085621 None:intergenic 20.0%
!!! TTCTTTTGTTAGTAATTGTA+TGG + chr6_2:81085692-81085711 None:intergenic 20.0%
!! AATGACATCTTACATATTTA+AGG - chr6_2:81085756-81085775 Msa0931550:intron 20.0%
!! ATAGGATAGTTATGATTAAT+TGG - chr6_2:81085885-81085904 Msa0931550:CDS 20.0%
!! TATTAGGAAAATTATGTTGA+AGG - chr6_2:81085972-81085991 Msa0931550:CDS 20.0%
!! TTATGAAATATTAATCTGCA+TGG - chr6_2:81085996-81086015 Msa0931550:CDS 20.0%
!! TATGAAATATTAATCTGCAT+GGG - chr6_2:81085997-81086016 Msa0931550:CDS 20.0%
!! ATCAAAAAAACATTATGTAC+GGG - chr6_2:81086021-81086040 Msa0931550:CDS 20.0%
!!! TTTGAAATTTCGATACATTA+CGG + chr6_2:81086117-81086136 None:intergenic 20.0%
!!! AAGATATTTTTGTTATCGTA+TGG - chr6_2:81086505-81086524 Msa0931550:intron 20.0%
!!! TTTTTTTCCGACAAAATTTA+AGG - chr6_2:81086596-81086615 Msa0931550:intron 20.0%
!!! TAGAAAACCTTAAATTTTGT+CGG + chr6_2:81086606-81086625 None:intergenic 20.0%
!! TAGTTAAAAAATTTAACGGT+AGG - chr6_2:81086624-81086643 Msa0931550:intron 20.0%
!!! ATTTTCAAATTTTAGTGATG+GGG - chr6_2:81086833-81086852 Msa0931550:intron 20.0%
!! ATTGACAAAAATGGTAAAAT+TGG + chr6_2:81086916-81086935 None:intergenic 20.0%
!!! TTTAATTTATGAAAGAACCA+AGG + chr6_2:81087126-81087145 None:intergenic 20.0%
!!! ATCATAGATCAATTTCATTT+TGG - chr6_2:81087247-81087266 Msa0931550:intron 20.0%
!!! TCATAGATCAATTTCATTTT+GGG - chr6_2:81087248-81087267 Msa0931550:intron 20.0%
!!! ATGTTTTTACATTACAATAC+GGG + chr6_2:81087303-81087322 None:intergenic 20.0%
!! AAGAATCAGAAAAATTGAAA+TGG - chr6_2:81087399-81087418 Msa0931550:intron 20.0%
!!! AATTTTACCCTTTATATCAT+TGG + chr6_2:81087471-81087490 None:intergenic 20.0%
!! AAAAAAATTGAAAAGTTGTG+AGG + chr6_2:81087736-81087755 None:intergenic 20.0%
!! TATGAACTGGTAATTAAAAT+TGG + chr6_2:81088062-81088081 None:intergenic 20.0%
!!! TTATGCAATATTTTATGAAC+TGG + chr6_2:81088075-81088094 None:intergenic 20.0%
!! AAATATTGCATAATATTCAG+AGG - chr6_2:81088082-81088101 Msa0931550:intron 20.0%
!! ATACAAATAGTTCAATAACT+CGG + chr6_2:81089230-81089249 None:intergenic 20.0%
!! AGTTATTGAACTATTTGTAT+TGG - chr6_2:81089230-81089249 Msa0931550:CDS 20.0%
!! AAGTAAGTTAAGTAAGAAAA+AGG - chr6_2:81089585-81089604 Msa0931550:five_prime_UTR 20.0%
!! AGTAAGTTAAGTAAGAAAAA+GGG - chr6_2:81089586-81089605 Msa0931550:five_prime_UTR 20.0%
! AGTAACTTTACTATCTATCA+CGG - chr6_2:81084842-81084861 Msa0931550:three_prime_UTR 25.0%
! AATAATATTAGGATTCACGT+TGG + chr6_2:81085271-81085290 None:intergenic 25.0%
! TCAAGAACTGCAATAATATT+AGG + chr6_2:81085282-81085301 None:intergenic 25.0%
! TTGAATTTACGGGAAATATT+AGG - chr6_2:81085382-81085401 Msa0931550:CDS 25.0%
! TGAATTTACGGGAAATATTA+GGG - chr6_2:81085383-81085402 Msa0931550:CDS 25.0%
! AAAAGAAATAAGAAAGTAGG+TGG + chr6_2:81085464-81085483 None:intergenic 25.0%
! ATTTGAACAACAAAATGACA+AGG + chr6_2:81085613-81085632 None:intergenic 25.0%
!!! CAAATGTATCTTTAGTTTGT+CGG - chr6_2:81085628-81085647 Msa0931550:CDS 25.0%
! CTGAGACAAATTGTAAAAAA+AGG - chr6_2:81086045-81086064 Msa0931550:CDS 25.0%
! GAGATATTATTTCAAATGCA+TGG + chr6_2:81086168-81086187 None:intergenic 25.0%
!! CATAGATCAATTTCATTTTG+GGG - chr6_2:81087249-81087268 Msa0931550:intron 25.0%
! GTGAAATCCAATGATATAAA+GGG - chr6_2:81087461-81087480 Msa0931550:intron 25.0%
!! AGATTTTCTTCTTACTTGTA+GGG - chr6_2:81087492-81087511 Msa0931550:intron 25.0%
! TCGAGAGATTTCAAATAATA+CGG + chr6_2:81087641-81087660 None:intergenic 25.0%
! AATCTTTCTATCAATTGTCA+TGG + chr6_2:81087683-81087702 None:intergenic 25.0%
!! AACTTTATTTGCGAGTTTAA+AGG - chr6_2:81087808-81087827 Msa0931550:intron 25.0%
!! ACTTTATTTGCGAGTTTAAA+GGG - chr6_2:81087809-81087828 Msa0931550:intron 25.0%
!! ATATGACTGTATTTCTATTG+TGG + chr6_2:81088114-81088133 None:intergenic 25.0%
! TACAACTTCATTAAACAACA+TGG - chr6_2:81088554-81088573 Msa0931550:intron 25.0%
!! TTTTCACATCATTATTTGCT+GGG + chr6_2:81088702-81088721 None:intergenic 25.0%
!! TTTTTCACATCATTATTTGC+TGG + chr6_2:81088703-81088722 None:intergenic 25.0%
!! AACAATATTGATAACAGGTA+AGG - chr6_2:81088757-81088776 Msa0931550:intron 25.0%
! AGAGTTGGAACTAATAAATT+CGG - chr6_2:81088994-81089013 Msa0931550:CDS 25.0%
!! AACTATTTGTATTGGTCTAA+TGG - chr6_2:81089238-81089257 Msa0931550:CDS 25.0%
!! ACTATTTGTATTGGTCTAAT+GGG - chr6_2:81089239-81089258 Msa0931550:CDS 25.0%
! GTCGGTATGATTTAATTAAA+GGG - chr6_2:81089356-81089375 Msa0931550:CDS 25.0%
! TCGGTATGATTTAATTAAAG+GGG - chr6_2:81089357-81089376 Msa0931550:CDS 25.0%
! TATGATTTAATTAAAGGGGA+TGG - chr6_2:81089361-81089380 Msa0931550:CDS 25.0%
!!! GGTTATGTTTTGATTTGGTT+TGG + chr6_2:81084966-81084985 None:intergenic 30.0%
TAATCTAACCTGTCTGATAA+GGG + chr6_2:81085147-81085166 None:intergenic 30.0%
ATAATCTAACCTGTCTGATA+AGG + chr6_2:81085148-81085167 None:intergenic 30.0%
!!! AAACTTTTTCAGAACACGAA+TGG - chr6_2:81085188-81085207 Msa0931550:CDS 30.0%
! TGTTCCTAGTGTTGAATTTA+CGG - chr6_2:81085371-81085390 Msa0931550:CDS 30.0%
TTTGCAGTTTCATACATTCA+TGG + chr6_2:81085574-81085593 None:intergenic 30.0%
!! TTTTTGTTATCGTATGGACT+AGG - chr6_2:81086511-81086530 Msa0931550:intron 30.0%
GTGAAGTCAATTGACAAAAA+TGG + chr6_2:81086925-81086944 None:intergenic 30.0%
GAGATTTATTCACAAATACC+AGG + chr6_2:81086983-81087002 None:intergenic 30.0%
ATTTGTACCAACATAGTTAC+AGG + chr6_2:81087072-81087091 None:intergenic 30.0%
! AACAGCTTTGTAGAATAAAG+AGG - chr6_2:81087223-81087242 Msa0931550:intron 30.0%
TACAATACGGGAAAGAATAA+TGG + chr6_2:81087291-81087310 None:intergenic 30.0%
ATTCGTAGATGCAAAATTGA+AGG - chr6_2:81087321-81087340 Msa0931550:intron 30.0%
CAGAAAAATTGAAATGGTGA+AGG - chr6_2:81087405-81087424 Msa0931550:intron 30.0%
GGTGAAATCCAATGATATAA+AGG - chr6_2:81087460-81087479 Msa0931550:intron 30.0%
! GAGATTTTCTTCTTACTTGT+AGG - chr6_2:81087491-81087510 Msa0931550:intron 30.0%
! GATTTTCTTCTTACTTGTAG+GGG - chr6_2:81087493-81087512 Msa0931550:intron 30.0%
AGTATAAGTGTATGGGTATA+TGG - chr6_2:81087520-81087539 Msa0931550:intron 30.0%
ATGGTATAATTTCCTAGTGA+TGG - chr6_2:81087539-81087558 Msa0931550:intron 30.0%
CAAAATATCCCATTGTTTCA+AGG - chr6_2:81087573-81087592 Msa0931550:intron 30.0%
AATACAAGCCTTGAAACAAT+GGG + chr6_2:81087584-81087603 None:intergenic 30.0%
AAATACAAGCCTTGAAACAA+TGG + chr6_2:81087585-81087604 None:intergenic 30.0%
CGAGAGATTTCAAATAATAC+GGG + chr6_2:81087640-81087659 None:intergenic 30.0%
! TATTTGAAATCTCTCGACTT+TGG - chr6_2:81087644-81087663 Msa0931550:intron 30.0%
! TCTCGACTTTGGTATATTTT+TGG - chr6_2:81087655-81087674 Msa0931550:intron 30.0%
! CTCGACTTTGGTATATTTTT+GGG - chr6_2:81087656-81087675 Msa0931550:intron 30.0%
AAATTGAAAAGTTGTGAGGA+TGG + chr6_2:81087732-81087751 None:intergenic 30.0%
! CTTTATTTGCGAGTTTAAAG+GGG - chr6_2:81087810-81087829 Msa0931550:intron 30.0%
TTAGTAAAAGGAAGGAGTAA+AGG - chr6_2:81087845-81087864 Msa0931550:intron 30.0%
! TGAGTTGACATAAAAACTCT+AGG - chr6_2:81087903-81087922 Msa0931550:intron 30.0%
GAGTTGACATAAAAACTCTA+GGG - chr6_2:81087904-81087923 Msa0931550:intron 30.0%
AAATGTTTCCGAAAACCAAA+CGG + chr6_2:81087931-81087950 None:intergenic 30.0%
! CTGTATTTCTATTGTGGATT+AGG + chr6_2:81088108-81088127 None:intergenic 30.0%
ACTTTGCTTCAAAATGTTCA+TGG + chr6_2:81088210-81088229 None:intergenic 30.0%
! ATCAAACCTGGACATATTTT+TGG - chr6_2:81088256-81088275 Msa0931550:intron 30.0%
GTTGTTTAATGAAGTTGTAG+AGG + chr6_2:81088553-81088572 None:intergenic 30.0%
! TTTCACATCATTATTTGCTG+GGG + chr6_2:81088701-81088720 None:intergenic 30.0%
GGTAAGGAAGTGATAAAAAA+CGG - chr6_2:81088773-81088792 Msa0931550:intron 30.0%
! GTTATGCTCTCAATCAATTT+TGG + chr6_2:81088890-81088909 None:intergenic 30.0%
!! ACTGAGTTGAAAATCTTTTC+TGG + chr6_2:81089074-81089093 None:intergenic 30.0%
TGAACCAGAACAATTTAAAC+CGG - chr6_2:81089180-81089199 Msa0931550:CDS 30.0%
CGTCGGTATGATTTAATTAA+AGG - chr6_2:81089355-81089374 Msa0931550:CDS 30.0%
CAGACAGGTTAGATTATTTC+TGG - chr6_2:81085151-81085170 Msa0931550:CDS 35.0%
!!! TGAAAAAGTTTTCTGGCTTC+TGG + chr6_2:81085179-81085198 None:intergenic 35.0%
!!! CGTGTTCTGAAAAAGTTTTC+TGG + chr6_2:81085186-81085205 None:intergenic 35.0%
TTTCTCTCACCTCTTTGATA+TGG - chr6_2:81085311-81085330 Msa0931550:CDS 35.0%
! GAACATCTCTTTTGTCAACA+AGG + chr6_2:81085338-81085357 None:intergenic 35.0%
GACAAAAGAGATGTTCTAGT+TGG - chr6_2:81085342-81085361 Msa0931550:CDS 35.0%
! GTTCCTAGTGTTGAATTTAC+GGG - chr6_2:81085372-81085391 Msa0931550:CDS 35.0%
TTTCCCGTAAATTCAACACT+AGG + chr6_2:81085378-81085397 None:intergenic 35.0%
TTTACGGGAAATATTAGGGT+TGG - chr6_2:81085387-81085406 Msa0931550:CDS 35.0%
TTATGAACTTTCTGACTCAG+TGG - chr6_2:81085520-81085539 Msa0931550:CDS 35.0%
! GGGCAAATGTTTTCAATGAT+AGG - chr6_2:81085867-81085886 Msa0931550:CDS 35.0%
GTGTAAGTTGTCACTATATC+TGG + chr6_2:81086651-81086670 None:intergenic 35.0%
! AGTATAAGTGTAGGGGTATA+TGG + chr6_2:81086867-81086886 None:intergenic 35.0%
ACAGAAAATGTATTCTGTGG+GGG + chr6_2:81086949-81086968 None:intergenic 35.0%
CACAGAAAATGTATTCTGTG+GGG + chr6_2:81086950-81086969 None:intergenic 35.0%
GCACAGAAAATGTATTCTGT+GGG + chr6_2:81086951-81086970 None:intergenic 35.0%
! CACAAATACCAGGAAACTTT+TGG + chr6_2:81086973-81086992 None:intergenic 35.0%
ATCCATTAATTACAACGCCT+TGG - chr6_2:81087106-81087125 Msa0931550:intron 35.0%
!! AACCAAGGCGTTGTAATTAA+TGG + chr6_2:81087111-81087130 None:intergenic 35.0%
AATTGAAATGGTGAAGGAGA+AGG - chr6_2:81087411-81087430 Msa0931550:intron 35.0%
!! AGAGATGGAATCAGTTTTGT+GGG - chr6_2:81087437-81087456 Msa0931550:intron 35.0%
! GGGTGAAAGTATAAGTGTAT+GGG - chr6_2:81087513-81087532 Msa0931550:intron 35.0%
! TGGGATATTTTGCTTGTTTG+TGG + chr6_2:81087565-81087584 None:intergenic 35.0%
AAAACACACCACCATAATCT+AGG + chr6_2:81087615-81087634 None:intergenic 35.0%
! AGGAGAGGACTTTTAGTAAA+AGG - chr6_2:81087833-81087852 Msa0931550:intron 35.0%
! GAGGACTTTTAGTAAAAGGA+AGG - chr6_2:81087837-81087856 Msa0931550:intron 35.0%
AAGGAAGGAGTAAAGGAAAA+TGG - chr6_2:81087852-81087871 Msa0931550:intron 35.0%
TCAACTCATACTCAAGTTAG+GGG + chr6_2:81087891-81087910 None:intergenic 35.0%
GTCAACTCATACTCAAGTTA+GGG + chr6_2:81087892-81087911 None:intergenic 35.0%
TGTCAACTCATACTCAAGTT+AGG + chr6_2:81087893-81087912 None:intergenic 35.0%
GAAAATATCGATAACGTGCT+TGG - chr6_2:81088031-81088050 Msa0931550:intron 35.0%
TGAAGCAAAGTTCAAGCATA+TGG - chr6_2:81088219-81088238 Msa0931550:intron 35.0%
GAAGCAAAGTTCAAGCATAT+GGG - chr6_2:81088220-81088239 Msa0931550:intron 35.0%
TTTGGTCCAAAAATATGTCC+AGG + chr6_2:81088265-81088284 None:intergenic 35.0%
!! TAGACAGTGTTGCTTCAATT+TGG + chr6_2:81088283-81088302 None:intergenic 35.0%
TGAACAGAAATTTCTGCAGT+GGG + chr6_2:81088331-81088350 None:intergenic 35.0%
GGAAGTGATAAAAAACGGAA+CGG - chr6_2:81088778-81088797 Msa0931550:intron 35.0%
ATAAAAAACGGAACGGAGTT+CGG - chr6_2:81088785-81088804 Msa0931550:intron 35.0%
!!! CACAACTTGCTTTTTGTGTT+GGG - chr6_2:81088830-81088849 Msa0931550:intron 35.0%
! TGCTCTCAATCAATTTTGGA+AGG + chr6_2:81088886-81088905 None:intergenic 35.0%
! TTGATTGAGAGCATAACGAA+CGG - chr6_2:81088893-81088912 Msa0931550:intron 35.0%
TTTGCAAGAGAAGTTGAGAA+AGG - chr6_2:81088925-81088944 Msa0931550:intron 35.0%
! GTTTGACTCGTTAAAAGAGT+TGG - chr6_2:81088979-81088998 Msa0931550:intron 35.0%
GTTGGAACTAATAAATTCGG+TGG - chr6_2:81088997-81089016 Msa0931550:CDS 35.0%
AAGAAGGGTGAGTTATTATG+TGG - chr6_2:81089118-81089137 Msa0931550:CDS 35.0%
AGAAGGGTGAGTTATTATGT+GGG - chr6_2:81089119-81089138 Msa0931550:CDS 35.0%
GTTTCAGAAGCTTGTAATGA+GGG - chr6_2:81089141-81089160 Msa0931550:CDS 35.0%
CAGAACAATTTAAACCGGAA+CGG - chr6_2:81089185-81089204 Msa0931550:CDS 35.0%
GAGAAGAAGAGAAGAGAGTT+CGG + chr6_2:81085006-81085025 None:intergenic 40.0%
! GATTCACGTTGGTGAAGAAA+GGG + chr6_2:81085260-81085279 None:intergenic 40.0%
CAACAAGGTCCATATCAAAG+AGG + chr6_2:81085323-81085342 None:intergenic 40.0%
TTCTGAACCTCAACATGCTA+AGG - chr6_2:81085425-81085444 Msa0931550:CDS 40.0%
!! TGTTATCGTATGGACTAGGA+TGG - chr6_2:81086515-81086534 Msa0931550:intron 40.0%
! GGGTGAAAGTATAAGTGTAG+GGG + chr6_2:81086874-81086893 None:intergenic 40.0%
! GGGGTGAAAGTATAAGTGTA+GGG + chr6_2:81087512-81087531 None:intergenic 40.0%
! AGGGGTGAAAGTATAAGTGT+AGG + chr6_2:81087511-81087530 None:intergenic 40.0%
GGCACAGAAAATGTATTCTG+TGG + chr6_2:81086952-81086971 None:intergenic 40.0%
TTTCTGTGCCAAAAGTTTCC+TGG - chr6_2:81086962-81086981 Msa0931550:intron 40.0%
ATAATTGGGGAGTTGAACAG+AGG + chr6_2:81087041-81087060 None:intergenic 40.0%
TACAGGCATGGGAGATAATT+GGG + chr6_2:81087055-81087074 None:intergenic 40.0%
TTACAGGCATGGGAGATAAT+TGG + chr6_2:81087056-81087075 None:intergenic 40.0%
ACCAACATAGTTACAGGCAT+GGG + chr6_2:81087066-81087085 None:intergenic 40.0%
TACCAACATAGTTACAGGCA+TGG + chr6_2:81087067-81087086 None:intergenic 40.0%
! GAGAGATGGAATCAGTTTTG+TGG - chr6_2:81087436-81087455 Msa0931550:intron 40.0%
!! GAGATGGAATCAGTTTTGTG+GGG - chr6_2:81087438-81087457 Msa0931550:intron 40.0%
!! AGATGGAATCAGTTTTGTGG+GGG - chr6_2:81087439-81087458 Msa0931550:intron 40.0%
! GGGGTGAAAGTATAAGTGTA+TGG - chr6_2:81087512-81087531 Msa0931550:intron 40.0%
ATTTAGCCCAGCCTAGATTA+TGG - chr6_2:81087601-81087620 Msa0931550:intron 40.0%
AGGATGGAAAGACAAATGTG+TGG + chr6_2:81087716-81087735 None:intergenic 40.0%
TATTTGCGAGTTTAAAGGGG+AGG - chr6_2:81087813-81087832 Msa0931550:intron 40.0%
!! TAAAAACTCTAGGGTCCGTT+TGG - chr6_2:81087913-81087932 Msa0931550:intron 40.0%
TCACGTAGTATACTTCATGC+AGG - chr6_2:81088172-81088191 Msa0931550:intron 40.0%
ACCAGAACTGATATCAAACC+TGG - chr6_2:81088244-81088263 Msa0931550:intron 40.0%
TCCAGGTTTGATATCAGTTC+TGG + chr6_2:81088248-81088267 None:intergenic 40.0%
GAACAGAAATTTCTGCAGTG+GGG + chr6_2:81088330-81088349 None:intergenic 40.0%
GTGAACAGAAATTTCTGCAG+TGG + chr6_2:81088332-81088351 None:intergenic 40.0%
AATTTCTTCGAGTGGTTGGA+TGG + chr6_2:81088477-81088496 None:intergenic 40.0%
GGAAAATTTCTTCGAGTGGT+TGG + chr6_2:81088481-81088500 None:intergenic 40.0%
TGGAGGAAAATTTCTTCGAG+TGG + chr6_2:81088485-81088504 None:intergenic 40.0%
CATAAGGGTAAGAGAAGGAA+TGG + chr6_2:81088505-81088524 None:intergenic 40.0%
! AAGAGCATAAGGGTAAGAGA+AGG + chr6_2:81088510-81088529 None:intergenic 40.0%
TAAAAAACGGAACGGAGTTC+GGG - chr6_2:81088786-81088805 Msa0931550:intron 40.0%
CCAACACAAAAAGCAAGTTG+TGG + chr6_2:81088832-81088851 None:intergenic 40.0%
!!! CCACAACTTGCTTTTTGTGT+TGG - chr6_2:81088829-81088848 Msa0931550:intron 40.0%
GTGTTGGGTTTCAACTCATA+TGG - chr6_2:81088845-81088864 Msa0931550:intron 40.0%
TTGGGTTTCAACTCATATGG+TGG - chr6_2:81088848-81088867 Msa0931550:intron 40.0%
TGGGTTTCAACTCATATGGT+GGG - chr6_2:81088849-81088868 Msa0931550:intron 40.0%
TCTCAACTTCTCTTGCAAAC+CGG + chr6_2:81088924-81088943 None:intergenic 40.0%
AGAAAGGAAGCAAGAGAGAA+AGG - chr6_2:81088941-81088960 Msa0931550:intron 40.0%
GGTTTCAGAAGCTTGTAATG+AGG - chr6_2:81089140-81089159 Msa0931550:CDS 40.0%
CGTTCCGGTTTAAATTGTTC+TGG + chr6_2:81089187-81089206 None:intergenic 40.0%
TTCTCTTTAGTGAACCGTTC+CGG + chr6_2:81089202-81089221 None:intergenic 40.0%
GAACGGTTCACTAAAGAGAA+AGG - chr6_2:81089202-81089221 Msa0931550:CDS 40.0%
CACTGTTTATTGGACACAGT+TGG + chr6_2:81089280-81089299 None:intergenic 40.0%
CTTACCTGCACACTGTTTAT+TGG + chr6_2:81089290-81089309 None:intergenic 40.0%
CAATAAACAGTGTGCAGGTA+AGG - chr6_2:81089288-81089307 Msa0931550:CDS 40.0%
TTCCATTACTGCCTTACAGA+AGG - chr6_2:81089387-81089406 Msa0931550:exon 40.0%
! TCTTCATTTGGCCTTCTGTA+AGG + chr6_2:81089401-81089420 None:intergenic 40.0%
AGAAGGCCAAATGAAGAGTT+AGG - chr6_2:81089404-81089423 Msa0931550:five_prime_UTR 40.0%
GAAGGCCAAATGAAGAGTTA+GGG - chr6_2:81089405-81089424 Msa0931550:five_prime_UTR 40.0%
ACCAACCCTAACTCTTCATT+TGG + chr6_2:81089413-81089432 None:intergenic 40.0%
AAGAAGAGAAGAGAGTTCGG+TGG + chr6_2:81085003-81085022 None:intergenic 45.0%
TCTGATAAGGGACCTAGCAA+TGG + chr6_2:81085135-81085154 None:intergenic 45.0%
TTGGTGAAGAAAGGGAACGT+GGG + chr6_2:81085252-81085271 None:intergenic 45.0%
! GGATTCACGTTGGTGAAGAA+AGG + chr6_2:81085261-81085280 None:intergenic 45.0%
AGTGGTACCTTAGCATGTTG+AGG + chr6_2:81085435-81085454 None:intergenic 45.0%
!! GAAAGTAGGTGGTGTCATAG+TGG + chr6_2:81085453-81085472 None:intergenic 45.0%
!! TATCGTATGGACTAGGATGG+TGG - chr6_2:81086518-81086537 Msa0931550:intron 45.0%
!! ATCGTATGGACTAGGATGGT+GGG - chr6_2:81086519-81086538 Msa0931550:intron 45.0%
CAACTTACACTAGACGCTCA+AGG - chr6_2:81086661-81086680 Msa0931550:intron 45.0%
ACAGGCATGGGAGATAATTG+GGG + chr6_2:81087054-81087073 None:intergenic 45.0%
TCCCATGCCTGTAACTATGT+TGG - chr6_2:81087062-81087081 Msa0931550:intron 45.0%
TGAAGGAGAAGGAAGAGAGA+TGG - chr6_2:81087422-81087441 Msa0931550:intron 45.0%
ACACCACCATAATCTAGGCT+GGG + chr6_2:81087610-81087629 None:intergenic 45.0%
!!! TCTAGGGTCCGTTTGGTTTT+CGG - chr6_2:81087920-81087939 Msa0931550:intron 45.0%
CTCTGGCAAGTACTTTGCTT+AGG + chr6_2:81088358-81088377 None:intergenic 45.0%
! TTTGGGATCAAGGGAAGGAT+CGG + chr6_2:81088381-81088400 None:intergenic 45.0%
!!! TTCGGCGATTTTGGGATCAA+GGG + chr6_2:81088390-81088409 None:intergenic 45.0%
!!! ATTCGGCGATTTTGGGATCA+AGG + chr6_2:81088391-81088410 None:intergenic 45.0%
AAGGGTAAGAGAAGGAATGG+AGG + chr6_2:81088502-81088521 None:intergenic 45.0%
TACCCTTATGCTCTTGTCAG+TGG - chr6_2:81088515-81088534 Msa0931550:intron 45.0%
! CTCCACTGACAAGAGCATAA+GGG + chr6_2:81088520-81088539 None:intergenic 45.0%
! TCTCCACTGACAAGAGCATA+AGG + chr6_2:81088521-81088540 None:intergenic 45.0%
AACTTCTCTTGCAAACCGGT+TGG + chr6_2:81088920-81088939 None:intergenic 45.0%
AAGGAAGCAAGAGAGAAAGG+CGG - chr6_2:81088944-81088963 Msa0931550:intron 45.0%
AGAAAGGCGGTTCAACTCTT+GGG - chr6_2:81088957-81088976 Msa0931550:intron 45.0%
CAAATTGAAGTGGAACCGGT+GGG + chr6_2:81089045-81089064 None:intergenic 45.0%
CGACCAAATTGAAGTGGAAC+CGG + chr6_2:81089049-81089068 None:intergenic 45.0%
TCCGCGTTCAATGTGAAGAA+GGG - chr6_2:81089103-81089122 Msa0931550:CDS 45.0%
ACCCTTCTTCACATTGAACG+CGG + chr6_2:81089107-81089126 None:intergenic 45.0%
! TCTGGTTCATCAAACACGAC+CGG + chr6_2:81089169-81089188 None:intergenic 45.0%
GTGTCCAATAAACAGTGTGC+AGG - chr6_2:81089283-81089302 Msa0931550:CDS 45.0%
! TTGTGGCACACTTGTTACGT+CGG - chr6_2:81089338-81089357 Msa0931550:CDS 45.0%
GCCAAATGAAGAGTTAGGGT+TGG - chr6_2:81089409-81089428 Msa0931550:five_prime_UTR 45.0%
!! TTTAAAAATAATTGTAAATA+AGG - chr6_2:81085846-81085865 Msa0931550:intron 5.0%
!! TTAAAAATAATTGTAAATAA+GGG - chr6_2:81085847-81085866 Msa0931550:intron 5.0%
!!! TTTTACAATTATTATTTTTT+TGG + chr6_2:81086467-81086486 None:intergenic 5.0%
!!! TTCTTTAAAAATATTATTTT+TGG - chr6_2:81087756-81087775 Msa0931550:intron 5.0%
TCGGTGGAGGTCACACTTTA+TGG + chr6_2:81084987-81085006 None:intergenic 50.0%
! AAGAGAAGAGAGTTCGGTGG+AGG + chr6_2:81085000-81085019 None:intergenic 50.0%
TGCTTTCGGTGGAGTTGCTA+GGG + chr6_2:81085064-81085083 None:intergenic 50.0%
TTGCTTTCGGTGGAGTTGCT+AGG + chr6_2:81085065-81085084 None:intergenic 50.0%
TAGCAACTCCACCGAAAGCA+AGG - chr6_2:81085064-81085083 Msa0931550:CDS 50.0%
TGCTAGGTCCCTTATCAGAC+AGG - chr6_2:81085136-81085155 Msa0931550:CDS 50.0%
ACGTGGGTGGAACATTGGTA+CGG + chr6_2:81085236-81085255 None:intergenic 50.0%
! GTTGGTGAAGAAAGGGAACG+TGG + chr6_2:81085253-81085272 None:intergenic 50.0%
GCTTGTTTGTGGCCATCACT+AGG + chr6_2:81087554-81087573 None:intergenic 50.0%
TAGCCCAGCCTAGATTATGG+TGG - chr6_2:81087604-81087623 Msa0931550:intron 50.0%
CACACCACCATAATCTAGGC+TGG + chr6_2:81087611-81087630 None:intergenic 50.0%
!!! GCGATTTTGGGATCAAGGGA+AGG + chr6_2:81088386-81088405 None:intergenic 50.0%
GATCCCAAAATCGCCGAATC+AGG - chr6_2:81088392-81088411 Msa0931550:intron 50.0%
!!! GAGCCTGATTCGGCGATTTT+GGG + chr6_2:81088398-81088417 None:intergenic 50.0%
GCTCCTCCATGCTCAACAAA+TGG - chr6_2:81088414-81088433 Msa0931550:intron 50.0%
! GAGCCATTTGTTGAGCATGG+AGG + chr6_2:81088420-81088439 None:intergenic 50.0%
! TGCGAGCCATTTGTTGAGCA+TGG + chr6_2:81088423-81088442 None:intergenic 50.0%
! CTTCTACCGACTGTGAGTGT+TGG - chr6_2:81088449-81088468 Msa0931550:intron 50.0%
! ATGGTGCCAACACTCACAGT+CGG + chr6_2:81088458-81088477 None:intergenic 50.0%
AGCATAACGAACGGTCCAAC+CGG - chr6_2:81088902-81088921 Msa0931550:intron 50.0%
GAGAAAGGCGGTTCAACTCT+TGG - chr6_2:81088956-81088975 Msa0931550:intron 50.0%
CCAAATTGAAGTGGAACCGG+TGG + chr6_2:81089046-81089065 None:intergenic 50.0%
!! CCACCGGTTCCACTTCAATT+TGG - chr6_2:81089043-81089062 Msa0931550:CDS 50.0%
! CTGGCTCGACCAAATTGAAG+TGG + chr6_2:81089055-81089074 None:intergenic 50.0%
CTCCGCGTTCAATGTGAAGA+AGG - chr6_2:81089102-81089121 Msa0931550:CDS 50.0%
GAAGCTTGTAATGAGGGACC+CGG - chr6_2:81089147-81089166 Msa0931550:CDS 50.0%
CTGGTTCATCAAACACGACC+GGG + chr6_2:81089168-81089187 None:intergenic 50.0%
! TGGTCTAATGGGCCACAAAC+TGG - chr6_2:81089250-81089269 Msa0931550:CDS 50.0%
ACAGTTGGCGAACCAGTTTG+TGG + chr6_2:81089265-81089284 None:intergenic 50.0%
GGCCTTCTGTAAGGCAGTAA+TGG + chr6_2:81089392-81089411 None:intergenic 50.0%
!! TATCGGTGGTGGGAGTGACA+TGG + chr6_2:81085031-81085050 None:intergenic 55.0%
TTCGGTGGAGTTGCTAGGGA+CGG + chr6_2:81085060-81085079 None:intergenic 55.0%
TCCACCGAAAGCAAGGCCAA+CGG - chr6_2:81085071-81085090 Msa0931550:CDS 55.0%
!! AGCTCCGTTGGCCTTGCTTT+CGG + chr6_2:81085078-81085097 None:intergenic 55.0%
AGGGAACGTGGGTGGAACAT+TGG + chr6_2:81085241-81085260 None:intergenic 55.0%
GTGAAGAAAGGGAACGTGGG+TGG + chr6_2:81085249-81085268 None:intergenic 55.0%
GCGAGTTTAAAGGGGAGGAG+AGG - chr6_2:81087818-81087837 Msa0931550:intron 55.0%
! ATCAAGGGAAGGATCGGCTC+TGG + chr6_2:81088375-81088394 None:intergenic 55.0%
!!! GGAGCCTGATTCGGCGATTT+TGG + chr6_2:81088399-81088418 None:intergenic 55.0%
GAGCATGGAGGAGCCTGATT+CGG + chr6_2:81088408-81088427 None:intergenic 55.0%
AACCCTGCGAATGAACCCAC+CGG - chr6_2:81089027-81089046 Msa0931550:CDS 55.0%
! AACCGGTGGGTTCATTCGCA+GGG + chr6_2:81089032-81089051 None:intergenic 55.0%
CACAATCAACGCAGCGGTGA+AGG + chr6_2:81089323-81089342 None:intergenic 55.0%
!! CTTCACCGCTGCGTTGATTG+TGG - chr6_2:81089321-81089340 Msa0931550:CDS 55.0%
GTGTGCCACAATCAACGCAG+CGG + chr6_2:81089329-81089348 None:intergenic 55.0%
!! ACGGTGGTGGTATCGGTGGT+GGG + chr6_2:81085041-81085060 None:intergenic 60.0%
! GCTAGGGACGGTGGTGGTAT+CGG + chr6_2:81085048-81085067 None:intergenic 60.0%
!! TCCGTTGGCCTTGCTTTCGG+TGG + chr6_2:81085075-81085094 None:intergenic 60.0%
GCTACCGATCCGGCAGATTC+CGG - chr6_2:81085095-81085114 Msa0931550:CDS 60.0%
CTACCGATCCGGCAGATTCC+GGG - chr6_2:81085096-81085115 Msa0931550:CDS 60.0%
CTTCCCGGAATCTGCCGGAT+CGG + chr6_2:81085102-81085121 None:intergenic 60.0%
AGATTCCGGGAAGCCACGGA+TGG - chr6_2:81085109-81085128 Msa0931550:CDS 60.0%
AATGGCCATCCGTGGCTTCC+CGG + chr6_2:81085117-81085136 None:intergenic 60.0%
AGCCACGGATGGCCATTGCT+AGG - chr6_2:81085120-81085139 Msa0931550:CDS 60.0%
GACCTAGCAATGGCCATCCG+TGG + chr6_2:81085125-81085144 None:intergenic 60.0%
! GAACCGGTGGGTTCATTCGC+AGG + chr6_2:81089033-81089052 None:intergenic 60.0%
!! GACGGTGGTGGTATCGGTGG+TGG + chr6_2:81085042-81085061 None:intergenic 65.0%
! AGGGACGGTGGTGGTATCGG+TGG + chr6_2:81085045-81085064 None:intergenic 65.0%
GGAGTTGCTAGGGACGGTGG+TGG + chr6_2:81085054-81085073 None:intergenic 65.0%
GGTGGAGTTGCTAGGGACGG+TGG + chr6_2:81085057-81085076 None:intergenic 65.0%
GGCCAACGGAGCTACCGATC+CGG - chr6_2:81085085-81085104 Msa0931550:CDS 65.0%
TGCCGGATCGGTAGCTCCGT+TGG + chr6_2:81085090-81085109 None:intergenic 65.0%
CGTGGCTTCCCGGAATCTGC+CGG + chr6_2:81085107-81085126 None:intergenic 65.0%
CGGCAGATTCCGGGAAGCCA+CGG - chr6_2:81085105-81085124 Msa0931550:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 81084776 81089656 81084776 ID=Msa0931550;Name=Msa0931550
chr6_2 mRNA 81084776 81089656 81084776 ID=Msa0931550-mRNA-1;Parent=Msa0931550;Name=Msa0931550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=254|1|1|1|1|1|3|239|480
chr6_2 exon 81084776 81085658 81084776 ID=Msa0931550-mRNA-1:exon:14232;Parent=Msa0931550-mRNA-1
chr6_2 exon 81085857 81086238 81085857 ID=Msa0931550-mRNA-1:exon:14231;Parent=Msa0931550-mRNA-1
chr6_2 exon 81088986 81089656 81088986 ID=Msa0931550-mRNA-1:exon:14230;Parent=Msa0931550-mRNA-1
chr6_2 five_prime_UTR 81089403 81089656 81089403 ID=Msa0931550-mRNA-1:five_prime_utr;Parent=Msa0931550-mRNA-1
chr6_2 CDS 81088986 81089402 81088986 ID=Msa0931550-mRNA-1:cds;Parent=Msa0931550-mRNA-1
chr6_2 CDS 81085857 81086238 81085857 ID=Msa0931550-mRNA-1:cds;Parent=Msa0931550-mRNA-1
chr6_2 CDS 81085015 81085658 81085015 ID=Msa0931550-mRNA-1:cds;Parent=Msa0931550-mRNA-1
chr6_2 three_prime_UTR 81084776 81085014 81084776 ID=Msa0931550-mRNA-1:three_prime_utr;Parent=Msa0931550-mRNA-1
Gene Sequence

>Msa0931550

ATGTCACTCCCACCACCGATACCACCACCGTCCCTAGCAACTCCACCGAAAGCAAGGCCAACGGAGCTACCGATCCGGCAGATTCCGGGAAGCCACGGATGGCCATTGCTAGGTCCCTTATCAGACAGGTTAGATTATTTCTGGTTCCAGAAGCCAGAAAACTTTTTCAGAACACGAATGGACAAGTACAAGAGTACTGTATTCCGTACCAATGTTCCACCCACGTTCCCTTTCTTCACCAACGTGAATCCTAATATTATTGCAGTTCTTGATTGTAAGTCTTTCTCTCACCTCTTTGATATGGACCTTGTTGACAAAAGAGATGTTCTAGTTGGAGATTTTGTTCCTAGTGTTGAATTTACGGGAAATATTAGGGTTGGTGTTTATCAAGATGTTTCTGAACCTCAACATGCTAAGGCAAAGAATTTCTCCATGAACATTTTGAAGCAAAGTTCAAGCATATGGGTACCAGAACTGATATCAAACCTGGACATATTTTTGGACCAAATTGAAGCAACACTGTCTAATTCTTCATCAGCAAGTTACTTCTCCCCACTGCAGAAATTTCTGTTCACGTTCCTAAGCAAAGTACTTGCCAGAGCCGATCCTTCCCTTGATCCCAAAATCGCCGAATCAGGCTCCTCCATGCTCAACAAATGGCTCGCAGTTCAGCTTCTACCGACTGTGAGTGTTGGCACCATCCAACCACTCGAAGAAATTTTCCTCCATTCCTTCTCTTACCCTTATGCTCTTGTCAGTGGAGACTACAAAAACCTCTACAACTTCATTAAACAACATGGTAAGGAAGTGATAAAAAACGGAACGGAGTTCGGGTTGAGTGAAGATGAAGCAATCCACAACTTGCTTTTTGTGTTGGGTTTCAACTCATATGGTGGGTTTTCAATTTTCCTTCCAAAATTGATTGAGAGCATAACGAACGGTCCAACCGGTTTGCAAGAGAAGTTGAGAAAGGAAGCAAGAGAGAAAGGCGGTTCAACTCTTGGGTTTGACTCGTTAAAAGAGTTGGAACTAATAAATTCGGTGGTTTATGAAACCCTGCGAATGAACCCACCGGTTCCACTTCAATTTGGTCGAGCCAGAAAAGATTTTCAACTCAGTTCATATGACTCCGCGTTCAATGTGAAGAAGGGTGAGTTATTATGTGGGTTTCAGAAGCTTGTAATGAGGGACCCGGTCGTGTTTGATGAACCAGAACAATTTAAACCGGAACGGTTCACTAAAGAGAAAGGAGCCGAGTTATTGAACTATTTGTATTGGTCTAATGGGCCACAAACTGGTTCGCCAACTGTGTCCAATAAACAGTGTGCAGGTAAGGACATCGTGACCTTCACCGCTGCGTTGATTGTGGCACACTTGTTACGTCGGTATGATTTAATTAAAGGGGATGGTAGTTCCATTACTGCCTTACAGAAGGCCAAATGA

Protein sequence

>Msa0931550

MSLPPPIPPPSLATPPKARPTELPIRQIPGSHGWPLLGPLSDRLDYFWFQKPENFFRTRMDKYKSTVFRTNVPPTFPFFTNVNPNIIAVLDCKSFSHLFDMDLVDKRDVLVGDFVPSVEFTGNIRVGVYQDVSEPQHAKAKNFSMNILKQSSSIWVPELISNLDIFLDQIEATLSNSSSASYFSPLQKFLFTFLSKVLARADPSLDPKIAESGSSMLNKWLAVQLLPTVSVGTIQPLEEIFLHSFSYPYALVSGDYKNLYNFIKQHGKEVIKNGTEFGLSEDEAIHNLLFVLGFNSYGGFSIFLPKLIESITNGPTGLQEKLRKEAREKGGSTLGFDSLKELELINSVVYETLRMNPPVPLQFGRARKDFQLSSYDSAFNVKKGELLCGFQKLVMRDPVVFDEPEQFKPERFTKEKGAELLNYLYWSNGPQTGSPTVSNKQCAGKDIVTFTAALIVAHLLRRYDLIKGDGSSITALQKAK*