AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0703420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703420 MtrunA17_Chr8g0381581 94.778 383 20 0 1 383 1 383 0.0 755
Msa0703420 MtrunA17_Chr7g0254461 60.733 382 143 2 16 390 13 394 1.72e-178 502
Msa0703420 MtrunA17_Chr1g0159971 57.441 383 157 3 9 388 13 392 4.33e-164 466
Msa0703420 MtrunA17_Chr1g0159991 55.440 386 166 3 3 388 2 381 1.81e-158 451
Msa0703420 MtrunA17_Chr1g0159981 53.403 382 175 2 7 388 13 391 2.85e-149 428
Msa0703420 MtrunA17_Chr1g0160011 54.308 383 169 4 6 387 5 382 4.32e-148 425
Msa0703420 MtrunA17_Chr1g0160101 54.178 371 165 4 20 388 21 388 2.66e-147 423
Msa0703420 MtrunA17_Chr1g0160031 52.279 373 173 3 16 388 15 382 6.48e-144 414
Msa0703420 MtrunA17_Chr7g0226941 50.278 360 169 6 35 390 28 381 1.60e-124 364
Msa0703420 MtrunA17_Chr6g0450701 48.267 375 174 5 19 387 18 378 4.04e-122 358
Msa0703420 MtrunA17_Chr7g0273101 47.368 361 180 7 29 385 18 372 2.36e-110 328
Msa0703420 MtrunA17_Chr8g0352901 46.703 364 173 6 33 387 21 372 1.30e-108 323
Msa0703420 MtrunA17_Chr6g0450711 45.238 378 187 5 16 387 98 461 3.42e-108 326
Msa0703420 MtrunA17_Chr7g0226911 43.194 382 199 8 15 387 12 384 4.55e-102 307
Msa0703420 MtrunA17_Chr7g0226931 44.772 373 177 8 36 387 34 398 2.57e-100 303
Msa0703420 MtrunA17_Chr1g0191461 42.973 370 202 6 16 382 7 370 2.94e-100 302
Msa0703420 MtrunA17_Chr7g0275291 42.520 381 209 6 11 387 1 375 3.99e-100 302
Msa0703420 MtrunA17_Chr6g0450731 42.513 374 192 6 16 387 9 361 8.04e-98 296
Msa0703420 MtrunA17_Chr8g0347751 40.568 387 212 6 10 387 5 382 4.18e-97 295
Msa0703420 MtrunA17_Chr7g0271551 44.160 351 171 8 41 388 37 365 4.99e-95 289
Msa0703420 MtrunA17_Chr6g0450721 41.534 378 188 6 16 387 9 359 3.06e-94 286
Msa0703420 MtrunA17_Chr8g0339251 43.768 345 167 9 11 352 3 323 6.88e-85 261
Msa0703420 MtrunA17_Chr2g0283481 34.171 398 221 14 1 382 11 383 9.23e-58 194
Msa0703420 MtrunA17_Chr2g0283531 35.278 360 195 11 38 381 29 366 9.06e-56 187
Msa0703420 MtrunA17_Chr2g0283501 31.899 395 215 13 14 384 6 370 1.40e-52 179
Msa0703420 MtrunA17_Chr2g0317271 33.071 381 208 13 16 381 3 351 7.61e-52 177
Msa0703420 MtrunA17_Chr2g0317261 32.982 379 211 11 16 381 3 351 1.64e-51 176
Msa0703420 MtrunA17_Chr0c01g0489571 33.791 364 197 12 30 381 20 351 3.44e-51 175
Msa0703420 MtrunA17_Chr0c01g0489581 33.791 364 197 12 30 381 20 351 3.79e-51 175
Msa0703420 MtrunA17_Chr2g0301581 33.973 365 193 11 30 381 24 353 1.93e-50 173
Msa0703420 MtrunA17_Chr2g0283511 31.378 392 233 9 3 382 2 369 3.93e-49 171
Msa0703420 MtrunA17_Chr3g0104821 34.066 364 209 10 31 381 35 380 5.28e-49 170
Msa0703420 MtrunA17_Chr2g0301541 33.425 365 195 11 30 381 24 353 1.15e-48 169
Msa0703420 MtrunA17_Chr3g0112821 33.333 363 207 12 30 381 20 358 2.74e-47 165
Msa0703420 MtrunA17_Chr3g0096551 32.134 389 208 14 20 381 15 374 1.40e-46 164
Msa0703420 MtrunA17_Chr3g0093031 32.970 367 208 12 30 381 20 363 2.34e-46 163
Msa0703420 MtrunA17_Chr3g0112691 31.831 355 210 9 38 381 28 361 3.20e-44 157
Msa0703420 MtrunA17_Chr4g0057991 29.974 387 235 12 11 383 7 371 4.29e-44 157
Msa0703420 MtrunA17_Chr8g0374101 28.244 393 230 13 1 374 1 360 5.97e-38 140
Msa0703420 MtrunA17_Chr8g0344941 30.163 368 220 13 15 371 14 355 4.28e-37 138
Msa0703420 MtrunA17_Chr2g0301591 33.333 285 155 7 30 304 24 283 6.17e-36 133
Msa0703420 MtrunA17_Chr4g0027521 29.863 365 211 15 20 371 11 343 7.99e-36 134
Msa0703420 MtrunA17_Chr8g0349341 29.360 344 203 9 40 374 37 349 3.17e-35 133
Msa0703420 MtrunA17_Chr3g0131321 31.606 386 210 15 11 380 8 355 5.49e-35 132
Msa0703420 MtrunA17_Chr2g0294311 29.508 366 197 14 39 378 31 361 1.79e-34 131
Msa0703420 MtrunA17_Chr2g0330781 29.942 344 194 12 39 367 30 341 4.54e-34 129
Msa0703420 MtrunA17_Chr8g0349321 30.233 344 200 10 40 374 37 349 7.19e-34 129
Msa0703420 MtrunA17_Chr1g0182811 28.947 380 221 14 12 374 4 351 1.29e-33 129
Msa0703420 MtrunA17_Chr2g0301641 30.312 353 200 12 40 377 43 364 2.84e-33 128
Msa0703420 MtrunA17_Chr8g0341001 28.075 374 216 13 9 367 7 342 2.92e-33 127
Msa0703420 MtrunA17_Chr2g0294301 30.435 345 211 10 40 378 35 356 5.97e-33 127
Msa0703420 MtrunA17_Chr2g0301551 30.293 307 169 9 86 381 37 309 1.82e-32 124
Msa0703420 MtrunA17_Chr4g0008851 28.989 376 217 15 15 374 9 350 2.33e-32 125
Msa0703420 MtrunA17_Chr4g0068441 26.934 349 216 12 37 374 32 352 1.09e-31 123
Msa0703420 MtrunA17_Chr5g0438621 28.142 366 213 14 12 364 8 336 1.10e-31 123
Msa0703420 MtrunA17_Chr2g0301571 29.967 307 170 9 86 381 37 309 1.28e-31 122
Msa0703420 MtrunA17_Chr5g0396511 29.070 344 204 13 42 374 48 362 1.67e-31 123
Msa0703420 MtrunA17_Chr2g0283541 32.895 228 138 7 158 381 76 292 2.33e-31 121
Msa0703420 MtrunA17_Chr1g0156901 28.378 370 225 14 17 375 26 366 2.60e-31 122
Msa0703420 MtrunA17_Chr8g0349301 30.619 307 185 11 40 341 37 320 2.11e-30 119
Msa0703420 MtrunA17_Chr1g0189931 29.799 349 199 14 40 374 32 348 4.09e-30 119
Msa0703420 MtrunA17_Chr2g0285061 28.571 357 217 11 39 384 31 360 4.80e-30 119
Msa0703420 MtrunA17_Chr5g0438631 28.032 371 210 14 14 367 8 338 1.06e-29 117
Msa0703420 MtrunA17_Chr1g0156891 27.321 377 224 14 20 378 19 363 1.09e-29 118
Msa0703420 MtrunA17_Chr8g0344931 30.058 346 194 10 40 374 37 345 1.33e-29 117
Msa0703420 MtrunA17_Chr7g0275011 28.382 377 224 14 11 374 7 350 1.61e-29 117
Msa0703420 MtrunA17_Chr3g0092131 27.520 367 217 13 20 371 4 336 1.79e-29 117
Msa0703420 MtrunA17_Chr2g0320671 30.084 359 211 13 19 367 11 339 1.85e-29 117
Msa0703420 MtrunA17_Chr7g0274991 27.441 379 218 16 15 374 9 349 3.37e-29 116
Msa0703420 MtrunA17_Chr1g0156911 29.191 346 200 15 35 367 32 345 3.45e-29 116
Msa0703420 MtrunA17_Chr1g0189901 27.457 346 205 12 40 371 31 344 3.95e-29 116
Msa0703420 MtrunA17_Chr3g0120861 29.155 343 201 13 34 364 32 344 5.41e-29 115
Msa0703420 MtrunA17_Chr5g0438641 29.825 342 196 13 39 367 31 341 8.51e-29 115
Msa0703420 MtrunA17_Chr7g0275021 27.586 348 208 11 40 374 34 350 9.96e-29 115
Msa0703420 MtrunA17_Chr8g0380041 28.108 370 218 12 16 370 6 342 1.29e-28 115
Msa0703420 MtrunA17_Chr3g0105401 26.359 368 230 12 11 367 1 338 1.45e-28 114
Msa0703420 MtrunA17_Chr2g0283191 24.866 374 236 12 13 368 11 357 5.47e-28 113
Msa0703420 MtrunA17_Chr7g0275001 26.757 370 228 11 18 374 3 342 6.73e-28 113
Msa0703420 MtrunA17_Chr5g0420811 27.974 311 193 9 11 314 7 293 9.55e-28 112
Msa0703420 MtrunA17_Chr4g0046151 27.704 379 222 14 20 374 16 366 1.00e-27 112
Msa0703420 MtrunA17_Chr5g0432101 28.367 349 196 14 38 367 31 344 1.84e-27 112
Msa0703420 MtrunA17_Chr3g0142921 27.273 352 216 13 35 375 31 353 2.22e-27 111
Msa0703420 MtrunA17_Chr6g0457921 26.667 375 226 15 17 374 4 346 2.33e-27 111
Msa0703420 MtrunA17_Chr1g0156921 27.200 375 218 14 20 375 21 359 2.48e-27 111
Msa0703420 MtrunA17_Chr8g0349331 26.005 373 205 10 12 374 6 317 4.10e-27 110
Msa0703420 MtrunA17_Chr1g0156931 26.966 356 214 13 35 377 36 358 9.88e-27 109
Msa0703420 MtrunA17_Chr3g0077571 27.869 366 225 12 16 374 8 341 1.81e-26 108
Msa0703420 MtrunA17_Chr4g0060811 27.841 352 208 13 42 378 29 349 2.43e-26 108
Msa0703420 MtrunA17_Chr3g0104831 29.825 285 174 8 105 381 33 299 1.21e-25 105
Msa0703420 MtrunA17_Chr5g0405821 27.869 366 222 14 11 363 14 350 1.56e-25 106
Msa0703420 MtrunA17_Chr8g0380031 26.374 364 210 14 14 365 63 380 2.48e-25 106
Msa0703420 MtrunA17_Chr8g0371471 25.714 350 218 12 34 371 35 354 4.95e-25 105
Msa0703420 MtrunA17_Chr3g0086641 26.667 390 238 14 11 384 8 365 3.16e-24 102
Msa0703420 MtrunA17_Chr8g0371481 26.346 353 217 12 34 373 35 357 4.58e-24 102
Msa0703420 MtrunA17_Chr3g0077581 27.596 337 207 12 39 364 35 345 5.34e-24 102
Msa0703420 MtrunA17_Chr3g0142941 27.729 339 204 13 35 362 42 350 5.71e-24 102
Msa0703420 MtrunA17_Chr2g0284921 27.003 337 199 10 39 364 33 333 1.55e-23 100
Msa0703420 MtrunA17_Chr2g0285001 25.272 368 228 12 11 367 5 336 2.52e-23 100
Msa0703420 MtrunA17_Chr1g0189891 28.385 384 211 20 11 374 1 340 5.45e-23 99.4
Msa0703420 MtrunA17_Chr5g0434621 25.507 345 213 12 44 376 29 341 9.07e-23 98.6
Msa0703420 MtrunA17_Chr5g0444401 26.629 353 209 13 39 374 27 346 2.52e-22 97.4
Msa0703420 MtrunA17_Chr1g0178931 24.713 348 218 11 32 371 27 338 2.89e-22 97.1
Msa0703420 MtrunA17_Chr3g0085231 25.707 389 235 12 16 390 3 351 3.22e-22 96.7
Msa0703420 MtrunA17_Chr5g0437421 24.925 333 217 11 39 361 31 340 1.03e-21 95.5
Msa0703420 MtrunA17_Chr3g0085881 26.254 339 195 11 39 365 32 327 3.72e-21 94.0
Msa0703420 MtrunA17_Chr2g0301561 29.694 229 141 6 86 305 37 254 4.91e-21 91.7
Msa0703420 MtrunA17_Chr2g0284951 25.886 367 220 14 10 365 4 329 7.90e-21 93.2
Msa0703420 MtrunA17_Chr7g0215961 24.734 376 224 15 13 374 6 336 1.02e-20 92.4
Msa0703420 MtrunA17_Chr3g0099161 27.195 353 207 14 39 374 91 410 1.67e-20 92.8
Msa0703420 MtrunA17_Chr2g0284991 24.725 364 224 12 16 364 4 332 3.70e-20 91.3
Msa0703420 MtrunA17_Chr1g0178941 23.864 352 228 12 30 371 28 349 6.40e-20 90.5
Msa0703420 MtrunA17_Chr3g0099231 26.479 355 206 13 39 374 27 345 7.09e-20 90.5
Msa0703420 MtrunA17_Chr8g0371491 25.203 369 228 14 10 363 6 341 1.40e-19 89.4
Msa0703420 MtrunA17_Chr7g0266061 24.854 342 206 11 41 371 43 344 1.65e-19 89.0
Msa0703420 MtrunA17_Chr4g0027571 30.137 219 126 8 161 371 14 213 5.87e-19 85.1
Msa0703420 MtrunA17_Chr5g0405831 23.733 375 243 11 17 378 20 364 2.46e-18 85.9
Msa0703420 MtrunA17_Chr4g0017431 24.041 391 251 13 4 383 2 357 3.48e-17 82.4
Msa0703420 MtrunA17_Chr1g0157001 25.074 339 210 11 45 371 41 347 1.08e-16 80.9
Msa0703420 MtrunA17_Chr3g0104801 38.519 135 76 4 33 160 37 171 1.14e-16 77.4
Msa0703420 MtrunA17_Chr1g0198351 22.252 373 238 11 7 366 3 336 2.84e-16 79.7
Msa0703420 MtrunA17_Chr7g0229581 28.947 152 91 3 220 371 12 146 1.31e-15 73.9
Msa0703420 MtrunA17_Chr5g0440501 25.769 260 162 7 128 381 2 236 1.56e-15 75.9
Msa0703420 MtrunA17_Chr7g0273111 46.591 88 42 2 2 88 1 84 7.01e-15 70.1
Msa0703420 MtrunA17_Chr8g0370951 23.622 381 238 14 14 374 5 352 1.04e-14 75.1
Msa0703420 MtrunA17_Chr6g0455661 23.116 199 128 4 169 362 267 445 2.62e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0703420 AT3G26430.1 65.684 373 128 0 15 387 6 378 0.0 534
Msa0703420 AT1G67830.1 58.772 342 141 0 33 374 23 364 4.50e-157 447
Msa0703420 AT5G14450.1 50.781 384 171 7 11 388 16 387 6.75e-130 379
Msa0703420 AT3G27950.1 47.107 363 167 7 33 387 25 370 1.12e-109 327
Msa0703420 AT4G01130.1 46.467 368 193 4 21 387 16 380 5.12e-108 323
Msa0703420 AT1G54790.3 44.591 379 193 8 11 385 10 375 4.68e-107 320
Msa0703420 AT1G54790.1 43.947 380 201 8 12 385 1 374 8.85e-105 315
Msa0703420 AT1G54790.2 41.133 406 201 9 12 385 1 400 8.85e-99 300
Msa0703420 AT3G05180.1 41.779 371 204 8 21 385 15 379 1.99e-95 290
Msa0703420 AT1G09390.1 42.175 377 193 9 15 387 13 368 4.10e-93 284
Msa0703420 AT1G56670.1 40.431 371 199 7 21 388 21 372 5.97e-91 279
Msa0703420 AT3G62280.1 41.547 349 180 7 39 384 35 362 3.22e-81 254
Msa0703420 AT4G01130.2 46.316 285 151 2 21 305 16 298 5.92e-81 252
Msa0703420 AT4G01130.3 42.905 296 166 3 93 387 1 294 2.05e-78 244
Msa0703420 AT1G56670.2 42.160 287 154 4 21 305 21 297 2.96e-72 228
Msa0703420 AT3G62280.2 43.123 269 139 4 39 305 35 291 3.69e-62 202
Msa0703420 AT1G28600.1 35.092 379 205 12 20 380 10 365 1.39e-58 196
Msa0703420 AT1G31550.2 34.301 379 211 9 18 380 14 370 2.08e-57 193
Msa0703420 AT1G28640.1 31.852 405 222 12 16 396 8 382 7.56e-55 186
Msa0703420 AT2G27360.1 34.171 398 219 13 17 396 14 386 1.24e-54 186
Msa0703420 AT1G28580.1 30.964 394 239 10 11 391 8 381 1.04e-53 183
Msa0703420 AT1G31550.1 33.333 378 213 9 18 380 14 367 1.26e-53 183
Msa0703420 AT1G28650.1 31.414 382 224 8 16 379 10 371 1.47e-53 182
Msa0703420 AT5G45910.1 33.079 393 216 13 9 379 2 369 8.92e-53 180
Msa0703420 AT1G28610.2 32.718 379 219 10 16 379 7 364 1.15e-52 180
Msa0703420 AT1G28590.1 31.854 383 213 10 20 380 15 371 4.82e-52 179
Msa0703420 AT1G28570.1 30.649 385 232 11 9 380 7 369 1.18e-49 172
Msa0703420 AT1G28670.1 30.612 392 237 9 16 391 8 380 1.22e-48 169
Msa0703420 AT1G28660.1 31.773 406 213 15 16 391 8 379 3.17e-47 166
Msa0703420 AT1G28660.2 31.527 406 213 15 16 391 8 378 5.06e-46 162
Msa0703420 AT3G48460.1 28.982 383 233 10 15 382 13 371 1.94e-43 155
Msa0703420 AT2G23540.1 31.461 356 191 15 40 374 48 371 5.46e-37 139
Msa0703420 AT1G28580.2 28.481 316 199 9 83 391 5 300 1.14e-35 133
Msa0703420 AT4G10950.2 28.533 375 226 13 28 390 59 403 2.67e-34 131
Msa0703420 AT1G71120.1 30.362 359 204 13 28 374 18 342 5.31e-34 130
Msa0703420 AT5G22810.1 30.978 368 208 14 14 367 11 346 2.70e-33 128
Msa0703420 AT1G53920.1 29.504 383 218 14 14 378 21 369 5.33e-33 127
Msa0703420 AT3G50400.1 28.889 360 202 15 37 374 31 358 1.68e-32 126
Msa0703420 AT5G45960.1 29.714 350 208 13 34 371 41 364 4.89e-32 125
Msa0703420 AT4G26790.1 28.779 344 207 11 38 371 27 342 9.77e-32 123
Msa0703420 AT4G26790.2 28.779 344 207 11 38 371 27 342 9.77e-32 123
Msa0703420 AT4G10950.1 28.000 375 224 14 28 390 59 399 2.99e-31 123
Msa0703420 AT5G08460.1 28.645 391 233 13 11 384 19 380 6.20e-31 122
Msa0703420 AT5G03810.1 27.151 372 218 13 14 367 4 340 7.21e-31 121
Msa0703420 AT1G29670.1 27.321 377 224 13 11 373 5 345 1.65e-30 120
Msa0703420 AT5G33370.1 29.508 366 210 15 23 374 15 346 2.44e-30 120
Msa0703420 AT1G29670.2 27.249 378 225 13 11 374 73 414 3.51e-30 120
Msa0703420 AT5G40990.1 30.026 383 218 13 13 374 4 357 5.19e-30 119
Msa0703420 AT5G03820.1 25.926 378 225 13 10 371 10 348 6.35e-30 119
Msa0703420 AT5G03820.2 26.203 374 221 13 10 367 38 372 1.61e-29 118
Msa0703420 AT2G42990.1 26.558 369 223 13 22 373 10 347 4.75e-29 116
Msa0703420 AT3G04290.1 27.540 374 217 16 16 374 11 345 1.11e-28 115
Msa0703420 AT5G18430.1 27.882 373 218 14 17 374 10 346 1.24e-28 115
Msa0703420 AT1G53940.2 30.591 389 209 15 18 379 6 360 6.06e-28 114
Msa0703420 AT1G06990.1 27.747 364 219 14 10 358 4 338 7.45e-28 113
Msa0703420 AT1G59406.1 26.471 374 232 14 15 377 5 346 9.24e-28 112
Msa0703420 AT1G59030.1 26.471 374 232 14 15 377 5 346 9.24e-28 112
Msa0703420 AT1G58725.1 26.471 374 232 14 15 377 5 346 9.24e-28 112
Msa0703420 AT5G15720.1 28.319 339 207 12 39 367 29 341 2.12e-27 112
Msa0703420 AT3G16370.1 28.205 351 211 11 39 377 29 350 2.44e-27 111
Msa0703420 AT5G42170.1 27.066 351 219 9 35 377 45 366 4.40e-27 111
Msa0703420 AT4G28780.1 25.995 377 232 13 11 374 5 347 4.49e-27 111
Msa0703420 AT1G54030.1 28.190 337 177 10 41 364 53 337 1.28e-26 110
Msa0703420 AT5G03980.1 29.000 200 131 3 179 377 127 316 1.94e-26 108
Msa0703420 AT1G20130.2 28.691 359 213 13 34 376 178 509 5.07e-26 110
Msa0703420 AT1G20130.1 28.691 359 213 13 34 376 198 529 6.47e-26 109
Msa0703420 AT1G28570.3 30.244 205 131 5 179 380 11 206 8.15e-26 104
Msa0703420 AT3G14225.2 28.895 353 209 11 40 380 37 359 1.17e-25 107
Msa0703420 AT1G29660.1 25.455 385 236 11 1 373 1 346 1.48e-25 107
Msa0703420 AT5G45670.1 25.753 365 235 11 12 367 1 338 1.95e-25 106
Msa0703420 AT3G14225.1 28.895 353 213 12 40 380 37 363 2.30e-25 106
Msa0703420 AT1G28570.2 30.244 205 131 5 179 380 102 297 2.55e-25 105
Msa0703420 AT1G33811.1 27.083 336 212 10 39 364 33 345 8.68e-25 104
Msa0703420 AT1G75880.1 25.065 387 235 14 11 377 21 372 1.18e-24 104
Msa0703420 AT3G14820.1 25.676 370 225 12 20 375 12 345 1.27e-24 103
Msa0703420 AT5G45950.1 25.656 343 207 12 40 370 40 346 1.35e-24 103
Msa0703420 AT1G75880.2 25.581 387 232 15 11 377 21 371 1.45e-24 104
Msa0703420 AT1G71691.2 26.426 333 209 11 39 364 54 357 3.11e-24 103
Msa0703420 AT4G18970.1 26.023 342 209 12 39 367 27 337 3.69e-24 102
Msa0703420 AT4G18970.2 26.023 342 209 12 39 367 27 337 4.11e-24 103
Msa0703420 AT1G75900.1 27.221 349 213 12 38 375 41 359 5.20e-24 102
Msa0703420 AT1G58520.3 28.286 350 209 15 35 377 25 339 9.41e-24 101
Msa0703420 AT1G58525.1 28.286 350 209 15 35 377 25 339 9.41e-24 101
Msa0703420 AT5G03610.1 28.916 332 188 15 41 361 44 338 9.47e-24 101
Msa0703420 AT1G53990.1 28.198 383 220 13 12 374 1 348 1.11e-23 101
Msa0703420 AT3G53100.1 27.321 377 222 13 12 371 1 342 1.37e-23 101
Msa0703420 AT2G30220.1 27.378 347 202 14 38 367 31 344 1.75e-23 100
Msa0703420 AT1G71250.1 25.575 391 246 13 14 390 15 374 2.07e-23 100
Msa0703420 AT2G31540.1 26.790 377 220 14 13 367 4 346 2.13e-23 100
Msa0703420 AT1G23500.1 30.636 346 188 13 40 374 35 339 3.33e-23 100
Msa0703420 AT2G03980.2 28.319 339 201 13 37 364 40 347 4.65e-23 99.8
Msa0703420 AT2G03980.3 28.319 339 201 13 37 364 40 347 4.65e-23 99.8
Msa0703420 AT2G03980.1 28.319 339 201 13 37 364 40 347 4.65e-23 99.8
Msa0703420 AT2G03980.4 28.319 339 201 13 37 364 40 347 4.65e-23 99.8
Msa0703420 AT1G58430.1 26.005 373 220 13 19 367 6 346 5.28e-23 99.8
Msa0703420 AT1G20120.1 26.912 353 208 14 34 370 72 390 5.36e-23 100
Msa0703420 AT2G30310.1 25.469 373 224 15 15 367 7 345 1.13e-22 98.6
Msa0703420 AT1G74460.1 26.176 340 205 14 42 367 25 332 1.32e-22 98.6
Msa0703420 AT1G73610.1 29.429 350 190 13 35 371 30 335 2.08e-22 97.8
Msa0703420 AT2G04570.1 26.016 369 231 13 19 376 9 346 3.31e-22 97.1
Msa0703420 AT1G20132.1 24.234 359 226 12 34 378 55 381 4.98e-22 97.1
Msa0703420 AT5G63170.1 26.776 366 202 12 13 361 3 319 1.05e-21 95.5
Msa0703420 AT3G43550.1 29.085 306 185 13 12 305 1 286 1.33e-21 94.4
Msa0703420 AT2G40250.1 23.684 342 219 12 40 367 36 349 1.55e-21 95.5
Msa0703420 AT2G24560.1 24.731 372 228 12 16 367 6 345 1.78e-21 95.1
Msa0703420 AT1G75920.2 27.273 374 209 15 15 371 7 334 3.55e-21 94.0
Msa0703420 AT1G71691.3 27.737 274 175 9 39 305 54 311 3.55e-21 93.6
Msa0703420 AT5G37690.1 25.135 370 231 12 15 371 2 338 9.29e-21 93.2
Msa0703420 AT2G19060.1 24.297 391 229 16 5 379 2 341 1.19e-20 92.8
Msa0703420 AT1G54020.2 24.100 361 219 11 16 365 8 324 3.30e-20 91.7
Msa0703420 AT1G54000.1 23.611 360 227 10 16 365 11 332 6.75e-20 90.9
Msa0703420 AT1G20135.1 28.391 317 182 12 17 314 6 296 9.55e-20 89.7
Msa0703420 AT2G19050.1 25.143 350 214 12 39 379 30 340 1.02e-19 90.1
Msa0703420 AT5G15720.2 28.881 277 174 10 39 305 29 292 1.21e-19 89.4
Msa0703420 AT1G53940.1 30.794 315 168 12 18 305 6 297 1.56e-19 89.0
Msa0703420 AT1G75890.2 26.178 382 226 15 14 377 20 363 2.34e-19 89.4
Msa0703420 AT5G33370.2 29.630 297 174 13 23 305 15 290 2.68e-19 88.6
Msa0703420 AT1G75890.3 26.178 382 226 15 14 377 49 392 3.04e-19 89.4
Msa0703420 AT2G19010.1 23.099 355 215 11 39 379 29 339 3.38e-19 88.6
Msa0703420 AT5G41890.1 26.271 354 213 13 42 374 33 359 3.51e-19 89.0
Msa0703420 AT1G28600.2 34.615 208 109 9 20 213 10 204 5.26e-19 85.5
Msa0703420 AT2G19010.2 23.099 355 215 11 39 379 59 369 5.51e-19 88.2
Msa0703420 AT1G28610.1 32.381 210 118 6 16 213 7 204 1.53e-18 84.7
Msa0703420 AT5G15720.3 26.042 288 181 10 87 367 48 310 1.98e-18 85.9
Msa0703420 AT1G75890.1 26.087 391 228 16 14 377 20 376 2.57e-18 86.3
Msa0703420 AT4G30140.1 25.634 355 204 13 39 379 32 340 3.73e-18 85.5
Msa0703420 AT1G54010.1 23.056 360 229 10 16 365 11 332 3.99e-18 85.9
Msa0703420 AT3G14220.1 26.197 355 197 14 39 377 31 336 5.92e-18 85.1
Msa0703420 AT2G19050.2 27.757 263 159 9 39 292 30 270 6.03e-18 84.0
Msa0703420 AT1G54030.2 29.644 253 128 9 41 280 53 268 9.81e-18 83.6
Msa0703420 AT1G75920.1 26.221 389 209 16 15 371 2 344 1.35e-17 84.0
Msa0703420 AT1G75930.1 26.198 313 196 12 16 314 8 299 5.04e-17 82.0
Msa0703420 AT5G55050.1 27.174 368 214 16 37 383 36 370 7.28e-17 82.0
Msa0703420 AT1G75910.1 26.596 376 213 16 21 374 7 341 7.62e-17 81.6
Msa0703420 AT5G37690.2 23.784 370 228 12 15 371 2 330 3.37e-16 79.7
Msa0703420 AT1G75920.4 26.603 312 173 13 73 371 38 306 5.79e-16 78.6
Msa0703420 AT4G16230.1 29.368 269 151 12 12 262 1 248 2.19e-15 75.9
Msa0703420 AT2G24560.2 25.260 289 181 9 38 310 32 301 2.20e-15 77.0
Msa0703420 AT1G71691.1 23.322 283 184 9 86 364 3 256 4.50e-15 75.5
Msa0703420 AT4G16233.1 35.294 136 75 3 249 383 1 124 9.04e-15 71.2
Msa0703420 AT5G03600.2 24.599 374 219 16 15 373 23 348 6.31e-13 70.1
Msa0703420 AT2G04020.1 29.952 207 127 6 37 236 40 235 8.54e-13 68.6
Msa0703420 AT2G31550.1 25.114 219 139 6 150 363 3 201 1.19e-12 67.4
Msa0703420 AT5G03600.1 24.496 347 204 14 39 373 13 313 1.37e-12 68.6
Msa0703420 AT2G04020.2 29.952 207 127 7 37 236 40 235 2.03e-12 68.2
Msa0703420 AT3G14210.1 23.596 356 214 14 40 381 36 347 8.12e-11 63.5

Find 103 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCAAGTGTGAAGATTATT+TGG 0.122643 4_4:+75339507 Msa0703420:CDS
TTAGCTAGATGACGAATTTC+TGG 0.170661 4_4:+75339861 Msa0703420:three_prime_UTR
CGTCTCATCATTGATTTCTT+AGG 0.193429 4_4:+75336997 Msa0703420:CDS
GCCAGTTCTCTAATGTTATA+AGG 0.202459 4_4:+75338875 Msa0703420:CDS
AGCAAATAACGTCGAGAAAT+TGG 0.208512 4_4:-75339718 None:intergenic
GCGGCCCAAATGGATAAATT+TGG 0.210484 4_4:+75339088 Msa0703420:CDS
AAGAAACTGTTGTGCAATTA+AGG 0.220507 4_4:+75339161 Msa0703420:CDS
TCCACCTATCTCTTTAAATA+TGG 0.240627 4_4:+75339601 Msa0703420:CDS
GGCGGTCTCTCAGCTGCTTT+TGG 0.242678 4_4:+75336910 Msa0703420:CDS
CAATTCCTTGCTCCAATTAC+AGG 0.268956 4_4:-75336841 None:intergenic
CACACCCAAATTTATCCATT+TGG 0.293217 4_4:-75339093 None:intergenic
GCCTTATTTGAGTGCCTACT+TGG 0.298473 4_4:+75338429 Msa0703420:CDS
GGATCCTGCTGTAGCAAAAT+TGG 0.301252 4_4:-75338482 None:intergenic
ACTGTATCCACTCTGGGATT+TGG 0.314839 4_4:-75338527 None:intergenic
GGAGATTCAAATTCTGATAC+TGG 0.318803 4_4:+75336889 Msa0703420:CDS
TCCAAGTAGGCACTCAAATA+AGG 0.319624 4_4:-75338430 None:intergenic
AGGAAGGTGGAAGGTCGTTT+TGG 0.345339 4_4:+75339005 Msa0703420:CDS
AACATTTCTAGTTGTAGTTA+TGG 0.346004 4_4:+75336810 Msa0703420:CDS
AGTATCCATTAGCTATTTGT+TGG 0.358170 4_4:-75339571 None:intergenic
ACACCCAAATTTATCCATTT+GGG 0.360885 4_4:-75339092 None:intergenic
ATTGGATTAATTGTGGTTGA+TGG 0.369056 4_4:-75339648 None:intergenic
GCATATATACCTGATGTATT+AGG 0.375326 4_4:+75338853 Msa0703420:CDS
CCAGTTCTCTAATGTTATAA+GGG 0.382414 4_4:+75338876 Msa0703420:CDS
TCTCCAAAGTTGAATATTGC+TGG 0.383683 4_4:-75336871 None:intergenic
CGGCCCAAATGGATAAATTT+GGG 0.396005 4_4:+75339089 Msa0703420:CDS
AGTGCCTACTTGGACTCAAT+AGG 0.405484 4_4:+75338439 Msa0703420:CDS
TCCGATGAGTGCGGCCCAAA+TGG 0.417118 4_4:+75339078 Msa0703420:CDS
AGTTGAACATCTAGGGATAT+AGG 0.417819 4_4:-75338550 None:intergenic
TCCAAGTGTGAAGATTATTT+GGG 0.428538 4_4:+75339508 Msa0703420:CDS
TTTCCAGCAATATTCAACTT+TGG 0.429736 4_4:+75336868 Msa0703420:CDS
ATAGGTTCAAACTTCAATAG+TGG 0.438987 4_4:+75338457 Msa0703420:CDS
ATGGTGACAAGTCCTGTAAT+TGG 0.447250 4_4:+75336829 Msa0703420:CDS
CCCTTATAACATTAGAGAAC+TGG 0.457680 4_4:-75338876 None:intergenic
ACATAAACAATTGTGGCCTC+TGG 0.462266 4_4:-75339193 None:intergenic
ATATTCCAACAAATAGCTAA+TGG 0.470808 4_4:+75339566 Msa0703420:CDS
TATTAAAATTGGATTAATTG+TGG 0.472438 4_4:-75339655 None:intergenic
TGTACGGGAGGCAGCCCAAT+GGG 0.475124 4_4:-75339042 None:intergenic
AATCAAAGAAAGAGCTATGC+AGG 0.480510 4_4:+75336741 Msa0703420:exon
TTAAGAACAGCTCAAGACTT+GGG 0.482540 4_4:+75338403 Msa0703420:intron
TGCAGGCACAAGGAGAGAAA+TGG 0.484110 4_4:+75336758 Msa0703420:CDS
CTTAAGAACAGCTCAAGACT+TGG 0.484348 4_4:+75338402 Msa0703420:intron
TCCATTTGGGCCGCACTCAT+CGG 0.484801 4_4:-75339079 None:intergenic
ATTGTACAAGTTGAACATCT+AGG 0.489282 4_4:-75338558 None:intergenic
GATTCACAACACAGGCCCAT+TGG 0.491162 4_4:+75339027 Msa0703420:CDS
GTGTGAAGATTATTTGGGAT+GGG 0.492458 4_4:+75339513 Msa0703420:CDS
ATTCACAACACAGGCCCATT+GGG 0.497833 4_4:+75339028 Msa0703420:CDS
GGTTGTATTCTGAGGTCTGA+TGG 0.500611 4_4:-75338506 None:intergenic
CAAGCCATATTTAAAGAGAT+AGG 0.501388 4_4:-75339605 None:intergenic
GAGAACTGGCCTAATACATC+AGG 0.504875 4_4:-75338862 None:intergenic
TGGGATTTGGTTGTATTCTG+AGG 0.505518 4_4:-75338514 None:intergenic
TTCAATAATGTGGCAAGATG+TGG 0.509198 4_4:+75339431 Msa0703420:CDS
ACACTGAAGCTTCTAATAAG+TGG 0.514049 4_4:+75339543 Msa0703420:CDS
CCTGCTGGACGTTTCTCTGA+TGG 0.519396 4_4:+75336973 Msa0703420:CDS
TAGAGTGTATGCAAGGAAGG+TGG 0.523767 4_4:+75338992 Msa0703420:intron
TAGGTTCAAACTTCAATAGT+GGG 0.527090 4_4:+75338458 Msa0703420:CDS
GGTCAAAATGATCTCACTGC+TGG 0.527821 4_4:+75338796 Msa0703420:CDS
AATATGGCTTGCCATGCCCA+TGG 0.528162 4_4:+75339617 Msa0703420:CDS
GTGATTGCATGCTGCGGACA+AGG 0.531552 4_4:+75339395 Msa0703420:CDS
GACGTTATTTGCTACAACGA+TGG 0.534260 4_4:+75339728 Msa0703420:three_prime_UTR
GGTTGATGGATTCATTCCCA+TGG 0.535151 4_4:-75339634 None:intergenic
TTGTAGAGTGTATGCAAGGA+AGG 0.537573 4_4:+75338989 Msa0703420:intron
TCCCAAATAATCTTCACACT+TGG 0.541406 4_4:-75339509 None:intergenic
TTGTACAAGTTGAACATCTA+GGG 0.542659 4_4:-75338557 None:intergenic
AATGGAGACAAGTTATGTCA+TGG 0.544280 4_4:+75336776 Msa0703420:CDS
TATTGAGCTACCTCGTTGAA+CGG 0.544341 4_4:-75339121 None:intergenic
GGGCTGCCTCCCGTACATGT+TGG 0.549996 4_4:+75339048 Msa0703420:CDS
CCATCAGAGAAACGTCCAGC+AGG 0.550347 4_4:-75336973 None:intergenic
TATAGGACTGTATCCACTCT+GGG 0.555546 4_4:-75338533 None:intergenic
GGAGCTACCAAGATTGTGAA+TGG 0.558303 4_4:+75339452 Msa0703420:CDS
AGTGTGAAGATTATTTGGGA+TGG 0.563332 4_4:+75339512 Msa0703420:CDS
ATATGCCTTGACTTGTTCTG+TGG 0.563902 4_4:-75338836 None:intergenic
ATATAGGACTGTATCCACTC+TGG 0.565470 4_4:-75338534 None:intergenic
CACATCAACATAAACAATTG+TGG 0.569372 4_4:-75339200 None:intergenic
GGATAACGATCCAACATGTA+CGG 0.570705 4_4:-75339058 None:intergenic
TGGATTCATTCCCATGGGCA+TGG 0.573061 4_4:-75339628 None:intergenic
ATATGGCTTGCCATGCCCAT+GGG 0.574142 4_4:+75339618 Msa0703420:CDS
ATGTACGGGAGGCAGCCCAA+TGG 0.574591 4_4:-75339043 None:intergenic
ACCACTGCATAATTAAGTAG+AGG 0.575832 4_4:-75336683 None:intergenic
GATAACGATCCAACATGTAC+GGG 0.584040 4_4:-75339057 None:intergenic
TGAACCTATTGAGTCCAAGT+AGG 0.584357 4_4:-75338443 None:intergenic
GTTGATGGATTCATTCCCAT+GGG 0.589788 4_4:-75339633 None:intergenic
ATGGAGACAAGTTATGTCAT+GGG 0.592091 4_4:+75336777 Msa0703420:CDS
TAAGAACAGCTCAAGACTTG+GGG 0.594764 4_4:+75338404 Msa0703420:intron
ACCTCTACTTAATTATGCAG+TGG 0.612250 4_4:+75336682 Msa0703420:five_prime_UTR
GAGCTACCAAGATTGTGAAT+GGG 0.615884 4_4:+75339453 Msa0703420:CDS
GAAAGAGCTATGCAGGCACA+AGG 0.618588 4_4:+75336748 Msa0703420:exon
GCCATATTTAAAGAGATAGG+TGG 0.620282 4_4:-75339602 None:intergenic
CAAGTCCTGTAATTGGAGCA+AGG 0.630793 4_4:+75336836 Msa0703420:CDS
GAAGTACAACTTCAATAATG+TGG 0.635942 4_4:+75339421 Msa0703420:CDS
TGTATTCTGAGGTCTGATGG+TGG 0.636643 4_4:-75338503 None:intergenic
GTGTATGCAAGGAAGGTGGA+AGG 0.640739 4_4:+75338996 Msa0703420:CDS
CATGACCACAGAACAAGTCA+AGG 0.645884 4_4:+75338831 Msa0703420:CDS
AACGATCCAACATGTACGGG+AGG 0.650653 4_4:-75339054 None:intergenic
AGGTTCAAACTTCAATAGTG+GGG 0.672286 4_4:+75338459 Msa0703420:CDS
TTGTTTAAATTAGATCTGAG+CGG 0.684674 4_4:+75336712 Msa0703420:five_prime_UTR
GATTCAAATTCTGATACTGG+CGG 0.690107 4_4:+75336892 Msa0703420:CDS
TTGCATGCTGCGGACAAGGT+GGG 0.691710 4_4:+75339399 Msa0703420:CDS
ATTGCATGCTGCGGACAAGG+TGG 0.695197 4_4:+75339398 Msa0703420:CDS
GGATCGTTATCCGATGAGTG+CGG 0.708625 4_4:+75339069 Msa0703420:CDS
AATACAACCAAATCCCAGAG+TGG 0.712512 4_4:+75338520 Msa0703420:CDS
AAGGGTGTGATTGCATGCTG+CGG 0.721874 4_4:+75339389 Msa0703420:CDS
GTGTGCGAAACCGTTCAACG+AGG 0.738394 4_4:+75339111 Msa0703420:CDS
ATTAAGGAAAGAGCTTCCAG+AGG 0.739508 4_4:+75339177 Msa0703420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATAATTTTAATTTT+TGG + chr4_4:75338700-75338719 Msa0703420:intron 0.0%
!! TAAATGTAAAAAAAAATTCT+TGG - chr4_4:75337497-75337516 None:intergenic 10.0%
!!! ATTTTTATTGTTTTTATTTG+CGG - chr4_4:75337644-75337663 None:intergenic 10.0%
!! AATGGTTATATTATTAATAT+GGG - chr4_4:75338031-75338050 None:intergenic 10.0%
!! AAATGGTTATATTATTAATA+TGG - chr4_4:75338032-75338051 None:intergenic 10.0%
!!! AATTTTCACTTTATTAAAAT+TGG - chr4_4:75339669-75339688 None:intergenic 10.0%
!!! ATTAAATTATCCAATTTTTT+AGG + chr4_4:75339818-75339837 Msa0703420:three_prime_UTR 10.0%
!! TATTGATCTAATTGTATAAA+GGG - chr4_4:75337558-75337577 None:intergenic 15.0%
!! TTATTGATCTAATTGTATAA+AGG - chr4_4:75337559-75337578 None:intergenic 15.0%
!!! TAAGAAAATGTTTTCATTTT+TGG + chr4_4:75337773-75337792 Msa0703420:intron 15.0%
!!! AAGAAAATGTTTTCATTTTT+GGG + chr4_4:75337774-75337793 Msa0703420:intron 15.0%
!!! CTAAGAATTTATTTACTTTT+TGG + chr4_4:75337911-75337930 Msa0703420:intron 15.0%
!! TAACCAAAAATAATTGATAT+GGG - chr4_4:75337999-75338018 None:intergenic 15.0%
!!! TGAAAAGAGAATTTTTTATT+TGG - chr4_4:75338144-75338163 None:intergenic 15.0%
!!! TTTTTGGTATATAAAATCTT+AGG - chr4_4:75338321-75338340 None:intergenic 15.0%
!! TATATCAAAAAATCAAAATC+TGG - chr4_4:75339306-75339325 None:intergenic 15.0%
!! TATTAAAATTGGATTAATTG+TGG - chr4_4:75339658-75339677 None:intergenic 15.0%
!! ACAATTAAAACCTAAAAAAT+TGG - chr4_4:75339831-75339850 None:intergenic 15.0%
!!! GACAATTTTTTAAACGTTTA+AGG + chr4_4:75337454-75337473 Msa0703420:intron 20.0%
!! TAACATAACCCTAAAAATAA+AGG + chr4_4:75337827-75337846 Msa0703420:intron 20.0%
!!! AATCCCATATCAATTATTTT+TGG + chr4_4:75337993-75338012 Msa0703420:intron 20.0%
!! GTAACCAAAAATAATTGATA+TGG - chr4_4:75338000-75338019 None:intergenic 20.0%
!!! TAGTTGTTTACATTTTCAAT+AGG - chr4_4:75338068-75338087 None:intergenic 20.0%
!!! AGAGAATTTTTTATTTGGAA+AGG - chr4_4:75338139-75338158 None:intergenic 20.0%
!!! TTTTCAATATTGTTTTGTGT+TGG + chr4_4:75338158-75338177 Msa0703420:intron 20.0%
!!! GTTGTAGTTAAAATGTTTTT+TGG - chr4_4:75338337-75338356 None:intergenic 20.0%
!! TTATTCCTCTAAATAAACTT+TGG + chr4_4:75338645-75338664 Msa0703420:intron 20.0%
!! ATAAACCAAAGTTTATTTAG+AGG - chr4_4:75338653-75338672 None:intergenic 20.0%
!!! ATAATTTTAATTTTTGGTGC+AGG + chr4_4:75338706-75338725 Msa0703420:intron 20.0%
!! GTTAGATAATTAGATAAATG+AGG - chr4_4:75338904-75338923 None:intergenic 20.0%
!! CAAAATCTGGTTAATTAATA+CGG - chr4_4:75339293-75339312 None:intergenic 20.0%
!!! CAAAATGTTTTTGAATTGTA+AGG + chr4_4:75339359-75339378 Msa0703420:intron 20.0%
!!! TTGACATTTGTTTTTACTAA+AGG - chr4_4:75339798-75339817 None:intergenic 20.0%
! TTGTTTAAATTAGATCTGAG+CGG + chr4_4:75336712-75336731 Msa0703420:five_prime_UTR 25.0%
!!! AACATTTCTAGTTGTAGTTA+TGG + chr4_4:75336810-75336829 Msa0703420:CDS 25.0%
! AATAAGAAGTGAGAAAAACA+AGG - chr4_4:75337206-75337225 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG + chr4_4:75337205-75337224 Msa0703420:intron 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr4_4:75337218-75337237 Msa0703420:intron 25.0%
! GTATAAAATGCACTTGTATA+TGG - chr4_4:75337353-75337372 None:intergenic 25.0%
! ATAAAAATAAGGGAAATGTC+AGG + chr4_4:75337656-75337675 Msa0703420:intron 25.0%
! TAAAAATAAGGGAAATGTCA+GGG + chr4_4:75337657-75337676 Msa0703420:intron 25.0%
!!! TAATGCCACCTTTATTTTTA+GGG - chr4_4:75337838-75337857 None:intergenic 25.0%
!! TTCTAAGAAAAGAGAAAGAA+AGG - chr4_4:75337961-75337980 None:intergenic 25.0%
! TAGGAAAGAGGAAAAAAAAA+TGG - chr4_4:75338049-75338068 None:intergenic 25.0%
!! TTACATTTTCAATAGGAAAG+AGG - chr4_4:75338061-75338080 None:intergenic 25.0%
!!! TGTCAACAACACATTTTTTT+TGG - chr4_4:75338241-75338260 None:intergenic 25.0%
! TCAGAAAAATACTCTTCTTT+GGG - chr4_4:75338754-75338773 None:intergenic 25.0%
!! GCTTTATACACTTTTGATAT+TGG + chr4_4:75338775-75338794 Msa0703420:CDS 25.0%
! TCTACAAAATGATAACACTA+TGG - chr4_4:75338976-75338995 None:intergenic 25.0%
! ATATTCCAACAAATAGCTAA+TGG + chr4_4:75339566-75339585 Msa0703420:CDS 25.0%
TTTCCAGCAATATTCAACTT+TGG + chr4_4:75336868-75336887 Msa0703420:CDS 30.0%
TGAAAAAAAGTGATTCCGTT+GGG - chr4_4:75336949-75336968 None:intergenic 30.0%
ATGAAAAAAAGTGATTCCGT+TGG - chr4_4:75336950-75336969 None:intergenic 30.0%
!! TCATTGATTTCTTAGGTAAG+TGG + chr4_4:75337004-75337023 Msa0703420:intron 30.0%
AAGAAACACTCAACGAAAAA+GGG - chr4_4:75337060-75337079 None:intergenic 30.0%
TAAGAAACACTCAACGAAAA+AGG - chr4_4:75337061-75337080 None:intergenic 30.0%
GAGATAAAGTTGTCAAAAAG+TGG + chr4_4:75337287-75337306 Msa0703420:intron 30.0%
! ATACAAGTGCATTTTATACC+AGG + chr4_4:75337354-75337373 Msa0703420:intron 30.0%
! TACAAGTGCATTTTATACCA+GGG + chr4_4:75337355-75337374 Msa0703420:intron 30.0%
AATGTTAACTTATGTCCCAA+GGG - chr4_4:75337534-75337553 None:intergenic 30.0%
AAATGTTAACTTATGTCCCA+AGG - chr4_4:75337535-75337554 None:intergenic 30.0%
ATCACTTATGCATCCAAAAA+TGG + chr4_4:75337617-75337636 Msa0703420:intron 30.0%
TCACTTATGCATCCAAAAAT+GGG + chr4_4:75337618-75337637 Msa0703420:intron 30.0%
CATAACCCTAAAAATAAAGG+TGG + chr4_4:75337830-75337849 Msa0703420:intron 30.0%
!!! CTAATGCCACCTTTATTTTT+AGG - chr4_4:75337839-75337858 None:intergenic 30.0%
ACATGAACACTATCAATGTT+TGG + chr4_4:75337876-75337895 Msa0703420:intron 30.0%
ATAGGTTCAAACTTCAATAG+TGG + chr4_4:75338457-75338476 Msa0703420:CDS 30.0%
TAGGTTCAAACTTCAATAGT+GGG + chr4_4:75338458-75338477 Msa0703420:CDS 30.0%
! TTGTACAAGTTGAACATCTA+GGG - chr4_4:75338560-75338579 None:intergenic 30.0%
! ATTGTACAAGTTGAACATCT+AGG - chr4_4:75338561-75338580 None:intergenic 30.0%
CTCAGAAAAATACTCTTCTT+TGG - chr4_4:75338755-75338774 None:intergenic 30.0%
!!! CAAAGAAGAGTATTTTTCTG+AGG + chr4_4:75338753-75338772 Msa0703420:CDS 30.0%
GCATATATACCTGATGTATT+AGG + chr4_4:75338853-75338872 Msa0703420:CDS 30.0%
CCAGTTCTCTAATGTTATAA+GGG + chr4_4:75338876-75338895 Msa0703420:CDS 30.0%
ACACCCAAATTTATCCATTT+GGG - chr4_4:75339095-75339114 None:intergenic 30.0%
AAGAAACTGTTGTGCAATTA+AGG + chr4_4:75339161-75339180 Msa0703420:CDS 30.0%
CACATCAACATAAACAATTG+TGG - chr4_4:75339203-75339222 None:intergenic 30.0%
!!! TGAATTGTAAGGTTTTGAGA+AGG + chr4_4:75339370-75339389 Msa0703420:intron 30.0%
!!! GAATTGTAAGGTTTTGAGAA+GGG + chr4_4:75339371-75339390 Msa0703420:intron 30.0%
GAAGTACAACTTCAATAATG+TGG + chr4_4:75339421-75339440 Msa0703420:CDS 30.0%
!!! TTTTTTCCCATTCACAATCT+TGG - chr4_4:75339462-75339481 None:intergenic 30.0%
ATCCAAGTGTGAAGATTATT+TGG + chr4_4:75339507-75339526 Msa0703420:CDS 30.0%
TCCAAGTGTGAAGATTATTT+GGG + chr4_4:75339508-75339527 Msa0703420:CDS 30.0%
AGTATCCATTAGCTATTTGT+TGG - chr4_4:75339574-75339593 None:intergenic 30.0%
TCCACCTATCTCTTTAAATA+TGG + chr4_4:75339601-75339620 Msa0703420:CDS 30.0%
CAAGCCATATTTAAAGAGAT+AGG - chr4_4:75339608-75339627 None:intergenic 30.0%
ATTGGATTAATTGTGGTTGA+TGG - chr4_4:75339651-75339670 None:intergenic 30.0%
! GGATGTATCTTACACATTTT+AGG + chr4_4:75339749-75339768 Msa0703420:three_prime_UTR 30.0%
ACCTCTACTTAATTATGCAG+TGG + chr4_4:75336682-75336701 Msa0703420:five_prime_UTR 35.0%
ACCACTGCATAATTAAGTAG+AGG - chr4_4:75336686-75336705 None:intergenic 35.0%
AATCAAAGAAAGAGCTATGC+AGG + chr4_4:75336741-75336760 Msa0703420:exon 35.0%
AATGGAGACAAGTTATGTCA+TGG + chr4_4:75336776-75336795 Msa0703420:CDS 35.0%
ATGGAGACAAGTTATGTCAT+GGG + chr4_4:75336777-75336796 Msa0703420:CDS 35.0%
TCTCCAAAGTTGAATATTGC+TGG - chr4_4:75336874-75336893 None:intergenic 35.0%
GGAGATTCAAATTCTGATAC+TGG + chr4_4:75336889-75336908 Msa0703420:CDS 35.0%
GATTCAAATTCTGATACTGG+CGG + chr4_4:75336892-75336911 Msa0703420:CDS 35.0%
AAAAAAAGTGATTCCGTTGG+GGG - chr4_4:75336947-75336966 None:intergenic 35.0%
GAAAAAAAGTGATTCCGTTG+GGG - chr4_4:75336948-75336967 None:intergenic 35.0%
!!! ACTTTTTTTCATACTCCTGC+TGG + chr4_4:75336958-75336977 Msa0703420:CDS 35.0%
!! CGTCTCATCATTGATTTCTT+AGG + chr4_4:75336997-75337016 Msa0703420:CDS 35.0%
TTGATTTCTTAGGTAAGTGG+TGG + chr4_4:75337007-75337026 Msa0703420:intron 35.0%
AAAACAATGGAGAGAGAAAG+AGG + chr4_4:75337231-75337250 Msa0703420:intron 35.0%
!!! TAGCTTTTAACTTATGCCCT+TGG + chr4_4:75337515-75337534 Msa0703420:intron 35.0%
!!! AGCTTTTAACTTATGCCCTT+GGG + chr4_4:75337516-75337535 Msa0703420:intron 35.0%
!! TTTTATTTGCGGCCCATTTT+TGG - chr4_4:75337633-75337652 None:intergenic 35.0%
TTGCTTAACATGTACCCTAA+GGG + chr4_4:75337797-75337816 Msa0703420:intron 35.0%
!! TATGTTAACTTGTGCCCTTA+GGG - chr4_4:75337814-75337833 None:intergenic 35.0%
!! TTATGTTAACTTGTGCCCTT+AGG - chr4_4:75337815-75337834 None:intergenic 35.0%
AAATAAAGGTGGCATTAGAG+AGG + chr4_4:75337841-75337860 Msa0703420:intron 35.0%
!! ATTGTTTTGTGTTGGTGTCT+TGG + chr4_4:75338166-75338185 Msa0703420:intron 35.0%
TGACAGATAAAAGAGAGAGT+TGG + chr4_4:75338205-75338224 Msa0703420:intron 35.0%
TTAAGAACAGCTCAAGACTT+GGG + chr4_4:75338403-75338422 Msa0703420:intron 35.0%
AGGTTCAAACTTCAATAGTG+GGG + chr4_4:75338459-75338478 Msa0703420:CDS 35.0%
AGTTGAACATCTAGGGATAT+AGG - chr4_4:75338553-75338572 None:intergenic 35.0%
TCCATACTTGTTCGCAAAAA+AGG + chr4_4:75338601-75338620 Msa0703420:CDS 35.0%
!!! ACCTTTTTTGCGAACAAGTA+TGG - chr4_4:75338605-75338624 None:intergenic 35.0%
GCCAGTTCTCTAATGTTATA+AGG + chr4_4:75338875-75338894 Msa0703420:CDS 35.0%
CCCTTATAACATTAGAGAAC+TGG - chr4_4:75338879-75338898 None:intergenic 35.0%
! CATTTTGTAGAGTGTATGCA+AGG + chr4_4:75338985-75339004 Msa0703420:intron 35.0%
CACACCCAAATTTATCCATT+TGG - chr4_4:75339096-75339115 None:intergenic 35.0%
ATCAGCCATGCACAAAAATA+TGG + chr4_4:75339244-75339263 Msa0703420:CDS 35.0%
TTCAATAATGTGGCAAGATG+TGG + chr4_4:75339431-75339450 Msa0703420:CDS 35.0%
TCCCAAATAATCTTCACACT+TGG - chr4_4:75339512-75339531 None:intergenic 35.0%
AGTGTGAAGATTATTTGGGA+TGG + chr4_4:75339512-75339531 Msa0703420:CDS 35.0%
! GTGTGAAGATTATTTGGGAT+GGG + chr4_4:75339513-75339532 Msa0703420:CDS 35.0%
ACACTGAAGCTTCTAATAAG+TGG + chr4_4:75339543-75339562 Msa0703420:CDS 35.0%
GCCATATTTAAAGAGATAGG+TGG - chr4_4:75339605-75339624 None:intergenic 35.0%
AGCAAATAACGTCGAGAAAT+TGG - chr4_4:75339721-75339740 None:intergenic 35.0%
ATGGTGACAAGTCCTGTAAT+TGG + chr4_4:75336829-75336848 Msa0703420:CDS 40.0%
CAATTCCTTGCTCCAATTAC+AGG - chr4_4:75336844-75336863 None:intergenic 40.0%
AAAAAAGTGATTCCGTTGGG+GGG - chr4_4:75336946-75336965 None:intergenic 40.0%
AGAGAGAAAGAGGAAGATAG+AGG + chr4_4:75337241-75337260 Msa0703420:intron 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG + chr4_4:75337378-75337397 Msa0703420:intron 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG + chr4_4:75337379-75337398 Msa0703420:intron 40.0%
CTTCTTATCTTGTGCCCTTA+GGG - chr4_4:75337396-75337415 None:intergenic 40.0%
GTTGCTTAACATGTACCCTA+AGG + chr4_4:75337796-75337815 Msa0703420:intron 40.0%
CTTAAGAACAGCTCAAGACT+TGG + chr4_4:75338402-75338421 Msa0703420:intron 40.0%
TAAGAACAGCTCAAGACTTG+GGG + chr4_4:75338404-75338423 Msa0703420:intron 40.0%
TCCAAGTAGGCACTCAAATA+AGG - chr4_4:75338433-75338452 None:intergenic 40.0%
TGAACCTATTGAGTCCAAGT+AGG - chr4_4:75338446-75338465 None:intergenic 40.0%
! TGGGATTTGGTTGTATTCTG+AGG - chr4_4:75338517-75338536 None:intergenic 40.0%
AATACAACCAAATCCCAGAG+TGG + chr4_4:75338520-75338539 Msa0703420:CDS 40.0%
TATAGGACTGTATCCACTCT+GGG - chr4_4:75338536-75338555 None:intergenic 40.0%
ATATAGGACTGTATCCACTC+TGG - chr4_4:75338537-75338556 None:intergenic 40.0%
!! ATATGCCTTGACTTGTTCTG+TGG - chr4_4:75338839-75338858 None:intergenic 40.0%
TTGTAGAGTGTATGCAAGGA+AGG + chr4_4:75338989-75339008 Msa0703420:intron 40.0%
!! TCGTTTTGGATTCACAACAC+AGG + chr4_4:75339019-75339038 Msa0703420:CDS 40.0%
GATAACGATCCAACATGTAC+GGG - chr4_4:75339060-75339079 None:intergenic 40.0%
GGATAACGATCCAACATGTA+CGG - chr4_4:75339061-75339080 None:intergenic 40.0%
CGGCCCAAATGGATAAATTT+GGG + chr4_4:75339089-75339108 Msa0703420:CDS 40.0%
TATTGAGCTACCTCGTTGAA+CGG - chr4_4:75339124-75339143 None:intergenic 40.0%
ATTAAGGAAAGAGCTTCCAG+AGG + chr4_4:75339177-75339196 Msa0703420:CDS 40.0%
ACATAAACAATTGTGGCCTC+TGG - chr4_4:75339196-75339215 None:intergenic 40.0%
! TTTTTGTGCATGGCTGATGA+GGG - chr4_4:75339242-75339261 None:intergenic 40.0%
! ATTTTTGTGCATGGCTGATG+AGG - chr4_4:75339243-75339262 None:intergenic 40.0%
!! GCTCACCATATTTTTGTGCA+TGG - chr4_4:75339252-75339271 None:intergenic 40.0%
GAGCTACCAAGATTGTGAAT+GGG + chr4_4:75339453-75339472 Msa0703420:CDS 40.0%
!! GTTGATGGATTCATTCCCAT+GGG - chr4_4:75339636-75339655 None:intergenic 40.0%
! GACGTTATTTGCTACAACGA+TGG + chr4_4:75339728-75339747 Msa0703420:three_prime_UTR 40.0%
CAAGTCCTGTAATTGGAGCA+AGG + chr4_4:75336836-75336855 Msa0703420:CDS 45.0%
GCTTCTTATCTTGTGCCCTT+AGG - chr4_4:75337397-75337416 None:intergenic 45.0%
!! GCCTTATTTGAGTGCCTACT+TGG + chr4_4:75338429-75338448 Msa0703420:CDS 45.0%
AGTGCCTACTTGGACTCAAT+AGG + chr4_4:75338439-75338458 Msa0703420:CDS 45.0%
GGATCCTGCTGTAGCAAAAT+TGG - chr4_4:75338485-75338504 None:intergenic 45.0%
!! TGTATTCTGAGGTCTGATGG+TGG - chr4_4:75338506-75338525 None:intergenic 45.0%
!! GGTTGTATTCTGAGGTCTGA+TGG - chr4_4:75338509-75338528 None:intergenic 45.0%
!! ACTGTATCCACTCTGGGATT+TGG - chr4_4:75338530-75338549 None:intergenic 45.0%
GGTCAAAATGATCTCACTGC+TGG + chr4_4:75338796-75338815 Msa0703420:CDS 45.0%
CATGACCACAGAACAAGTCA+AGG + chr4_4:75338831-75338850 Msa0703420:CDS 45.0%
! GAGAACTGGCCTAATACATC+AGG - chr4_4:75338865-75338884 None:intergenic 45.0%
TAGAGTGTATGCAAGGAAGG+TGG + chr4_4:75338992-75339011 Msa0703420:intron 45.0%
ATTCACAACACAGGCCCATT+GGG + chr4_4:75339028-75339047 Msa0703420:CDS 45.0%
GCGGCCCAAATGGATAAATT+TGG + chr4_4:75339088-75339107 Msa0703420:CDS 45.0%
GGAGCTACCAAGATTGTGAA+TGG + chr4_4:75339452-75339471 Msa0703420:CDS 45.0%
!! GGTTGATGGATTCATTCCCA+TGG - chr4_4:75339637-75339656 None:intergenic 45.0%
!! AAATAAAAACAATAAAAATA+AGG + chr4_4:75337645-75337664 Msa0703420:intron 5.0%
!! AATAAAAACAATAAAAATAA+GGG + chr4_4:75337646-75337665 Msa0703420:intron 5.0%
GAAAGAGCTATGCAGGCACA+AGG + chr4_4:75336748-75336767 Msa0703420:exon 50.0%
TGCAGGCACAAGGAGAGAAA+TGG + chr4_4:75336758-75336777 Msa0703420:CDS 50.0%
GGCACAAGTTAACATGACCC+TGG - chr4_4:75337375-75337394 None:intergenic 50.0%
GTGTATGCAAGGAAGGTGGA+AGG + chr4_4:75338996-75339015 Msa0703420:CDS 50.0%
! AGGAAGGTGGAAGGTCGTTT+TGG + chr4_4:75339005-75339024 Msa0703420:CDS 50.0%
GATTCACAACACAGGCCCAT+TGG + chr4_4:75339027-75339046 Msa0703420:CDS 50.0%
AACGATCCAACATGTACGGG+AGG - chr4_4:75339057-75339076 None:intergenic 50.0%
GGATCGTTATCCGATGAGTG+CGG + chr4_4:75339069-75339088 Msa0703420:CDS 50.0%
! AAGGGTGTGATTGCATGCTG+CGG + chr4_4:75339389-75339408 Msa0703420:CDS 50.0%
! AATATGGCTTGCCATGCCCA+TGG + chr4_4:75339617-75339636 Msa0703420:CDS 50.0%
! ATATGGCTTGCCATGCCCAT+GGG + chr4_4:75339618-75339637 Msa0703420:CDS 50.0%
TGGATTCATTCCCATGGGCA+TGG - chr4_4:75339631-75339650 None:intergenic 50.0%
AAAGTGATTCCGTTGGGGGG+TGG - chr4_4:75336943-75336962 None:intergenic 55.0%
CCATCAGAGAAACGTCCAGC+AGG - chr4_4:75336976-75336995 None:intergenic 55.0%
CCTGCTGGACGTTTCTCTGA+TGG + chr4_4:75336973-75336992 Msa0703420:CDS 55.0%
! GGGGCCAATTTTGCTACAGC+AGG + chr4_4:75338478-75338497 Msa0703420:CDS 55.0%
TCCATTTGGGCCGCACTCAT+CGG - chr4_4:75339082-75339101 None:intergenic 55.0%
GTGTGCGAAACCGTTCAACG+AGG + chr4_4:75339111-75339130 Msa0703420:CDS 55.0%
GTGATTGCATGCTGCGGACA+AGG + chr4_4:75339395-75339414 Msa0703420:CDS 55.0%
ATTGCATGCTGCGGACAAGG+TGG + chr4_4:75339398-75339417 Msa0703420:CDS 55.0%
TTGCATGCTGCGGACAAGGT+GGG + chr4_4:75339399-75339418 Msa0703420:CDS 55.0%
!! GGCGGTCTCTCAGCTGCTTT+TGG + chr4_4:75336910-75336929 Msa0703420:CDS 60.0%
TGTACGGGAGGCAGCCCAAT+GGG - chr4_4:75339045-75339064 None:intergenic 60.0%
ATGTACGGGAGGCAGCCCAA+TGG - chr4_4:75339046-75339065 None:intergenic 60.0%
TCCGATGAGTGCGGCCCAAA+TGG + chr4_4:75339078-75339097 Msa0703420:CDS 60.0%
GGACAAGCTCCACCCCCCAA+CGG + chr4_4:75336931-75336950 Msa0703420:CDS 65.0%
GGGCTGCCTCCCGTACATGT+TGG + chr4_4:75339048-75339067 Msa0703420:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 75336672 75339883 75336672 ID=Msa0703420;Name=Msa0703420
chr4_4 mRNA 75336672 75339883 75336672 ID=Msa0703420-mRNA-1;Parent=Msa0703420;Name=Msa0703420-mRNA-1;_AED=0.09;_eAED=0.09;_QI=85|1|1|1|1|1|5|219|398
chr4_4 exon 75336672 75337018 75336672 ID=Msa0703420-mRNA-1:exon:23607;Parent=Msa0703420-mRNA-1
chr4_4 exon 75338413 75338622 75338413 ID=Msa0703420-mRNA-1:exon:23608;Parent=Msa0703420-mRNA-1
chr4_4 exon 75338728 75338897 75338728 ID=Msa0703420-mRNA-1:exon:23609;Parent=Msa0703420-mRNA-1
chr4_4 exon 75338995 75339265 75338995 ID=Msa0703420-mRNA-1:exon:23610;Parent=Msa0703420-mRNA-1
chr4_4 exon 75339381 75339883 75339381 ID=Msa0703420-mRNA-1:exon:23611;Parent=Msa0703420-mRNA-1
chr4_4 five_prime_UTR 75336672 75336756 75336672 ID=Msa0703420-mRNA-1:five_prime_utr;Parent=Msa0703420-mRNA-1
chr4_4 CDS 75336757 75337018 75336757 ID=Msa0703420-mRNA-1:cds;Parent=Msa0703420-mRNA-1
chr4_4 CDS 75338413 75338622 75338413 ID=Msa0703420-mRNA-1:cds;Parent=Msa0703420-mRNA-1
chr4_4 CDS 75338728 75338897 75338728 ID=Msa0703420-mRNA-1:cds;Parent=Msa0703420-mRNA-1
chr4_4 CDS 75338995 75339265 75338995 ID=Msa0703420-mRNA-1:cds;Parent=Msa0703420-mRNA-1
chr4_4 CDS 75339381 75339664 75339381 ID=Msa0703420-mRNA-1:cds;Parent=Msa0703420-mRNA-1
chr4_4 three_prime_UTR 75339665 75339883 75339665 ID=Msa0703420-mRNA-1:three_prime_utr;Parent=Msa0703420-mRNA-1
Gene Sequence

>Msa0703420

ATGCAGGCACAAGGAGAGAAATGGAGACAAGTTATGTCATGGGTAGTAATTTCAACATTTCTAGTTGTAGTTATGGTGACAAGTCCTGTAATTGGAGCAAGGAATTGTAGTTTTCCAGCAATATTCAACTTTGGAGATTCAAATTCTGATACTGGCGGTCTCTCAGCTGCTTTTGGACAAGCTCCACCCCCCAACGGAATCACTTTTTTTCATACTCCTGCTGGACGTTTCTCTGATGGTCGTCTCATCATTGATTTCTTAGCTCAAGACTTGGGGTTGCCTTATTTGAGTGCCTACTTGGACTCAATAGGTTCAAACTTCAATAGTGGGGCCAATTTTGCTACAGCAGGATCCACCATCAGACCTCAGAATACAACCAAATCCCAGAGTGGATACAGTCCTATATCCCTAGATGTTCAACTTGTACAATACTCTGATTTCAAAGCAAGATCCATACTTGTTCGCAAAAAAGGAGTAGTGTTTATGAAATTGTTGCCCAAAGAAGAGTATTTTTCTGAGGCTTTATACACTTTTGATATTGGTCAAAATGATCTCACTGCTGGTTACAAACTCAACATGACCACAGAACAAGTCAAGGCATATATACCTGATGTATTAGGCCAGTTCTCTAATGTTATAAGGAGTGTATGCAAGGAAGGTGGAAGGTCGTTTTGGATTCACAACACAGGCCCATTGGGCTGCCTCCCGTACATGTTGGATCGTTATCCGATGAGTGCGGCCCAAATGGATAAATTTGGGTGTGCGAAACCGTTCAACGAGGTAGCTCAATATTTTAACTACAGATTGAAAGAAACTGTTGTGCAATTAAGGAAAGAGCTTCCAGAGGCCACAATTGTTTATGTTGATGTGTACACAGTGAAATACACCCTCATCAGCCATGCACAAAAATATGGTTTTGAGAAGGGTGTGATTGCATGCTGCGGACAAGGTGGGAAGTACAACTTCAATAATGTGGCAAGATGTGGAGCTACCAAGATTGTGAATGGGAAAAAAATTGTGATAGCTAAGTCGTGCAAAGATCCAAGTGTGAAGATTATTTGGGATGGGATTCATTACACTGAAGCTTCTAATAAGTGGATATTCCAACAAATAGCTAATGGATACTTTTCAGATCCACCTATCTCTTTAAATATGGCTTGCCATGCCCATGGGAATGAATCCATCAACCACAATTAA

Protein sequence

>Msa0703420

MQAQGEKWRQVMSWVVISTFLVVVMVTSPVIGARNCSFPAIFNFGDSNSDTGGLSAAFGQAPPPNGITFFHTPAGRFSDGRLIIDFLAQDLGLPYLSAYLDSIGSNFNSGANFATAGSTIRPQNTTKSQSGYSPISLDVQLVQYSDFKARSILVRKKGVVFMKLLPKEEYFSEALYTFDIGQNDLTAGYKLNMTTEQVKAYIPDVLGQFSNVIRSVCKEGGRSFWIHNTGPLGCLPYMLDRYPMSAAQMDKFGCAKPFNEVAQYFNYRLKETVVQLRKELPEATIVYVDVYTVKYTLISHAQKYGFEKGVIACCGQGGKYNFNNVARCGATKIVNGKKIVIAKSCKDPSVKIIWDGIHYTEASNKWIFQQIANGYFSDPPISLNMACHAHGNESINHN*