AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0874820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0874820 MtrunA17_Chr6g0455561 87.324 71 9 0 1 71 1 71 6.67e-37 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 138 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCAACTTAATAACTTAT+TGG 0.155827 6_1:+10669324 None:intergenic
AAGAGTCAGCTATGAATATT+TGG 0.188559 6_1:+10668530 None:intergenic
GGAAGTTGAGTGTGGTTATA+AGG 0.194585 6_1:+10673441 None:intergenic
AGCTTGATAAATCGTCTTTC+TGG 0.199112 6_1:-10671075 Msa0874820:three_prime_UTR
ATGAGATTTCTTCACCTTAA+TGG 0.201192 6_1:+10669294 None:intergenic
GAGGAATTGGAGAAGGAAAT+TGG 0.204892 6_1:+10673531 None:intergenic
TAACATGAACTAAACATTAA+TGG 0.208508 6_1:+10668942 None:intergenic
TAAGAATAATGGTTATATTA+TGG 0.227918 6_1:-10671298 Msa0874820:three_prime_UTR
CCATTTGTGACGAGTGGTTT+TGG 0.234987 6_1:+10669952 None:intergenic
TGATCGCAATTGGTGAGTTT+TGG 0.235077 6_1:-10671994 Msa0874820:three_prime_UTR
AGAAAGCATAATTGAATCTA+AGG 0.239496 6_1:+10669053 None:intergenic
CGATTACTACTGTGATTCTT+TGG 0.256043 6_1:-10672033 Msa0874820:three_prime_UTR
ATTCAATTATGCTTTCTTCT+TGG 0.275452 6_1:-10669047 Msa0874820:three_prime_UTR
TTGAATTAGTCCATGTAAAT+AGG 0.282147 6_1:+10668858 None:intergenic
GTGAAGCTCAAGCAAGTAAT+TGG 0.286059 6_1:-10672241 Msa0874820:three_prime_UTR
TCAGGGATTTATAAGAATAA+TGG 0.316108 6_1:-10671309 Msa0874820:intron
GCTTTCTCTGGCTGCACTCA+TGG 0.323827 6_1:-10670438 Msa0874820:three_prime_UTR
GGCTTTACAACAAACCTCTT+AGG 0.325519 6_1:+10672082 None:intergenic
ATGTTGAAAATGGTGAATTT+TGG 0.331467 6_1:+10673420 None:intergenic
GAAAATGAATGCTCTAATTA+AGG 0.337234 6_1:+10673572 None:intergenic
GAAGTTGAGTGTGGTTATAA+GGG 0.337888 6_1:+10673442 None:intergenic
CTCAAGAGAAGAGTTGAATT+AGG 0.338975 6_1:-10670837 Msa0874820:three_prime_UTR
ATGGATATGTTGGCTTTCTC+TGG 0.347313 6_1:-10670450 Msa0874820:three_prime_UTR
AACTCACTGCTGCTCTCATT+TGG 0.357387 6_1:+10671253 None:intergenic
AAGTGATCATTGTGAGGAAA+TGG 0.357790 6_1:-10672146 Msa0874820:three_prime_UTR
GAGGGAAAGAGGACCTTTCC+TGG 0.367903 6_1:-10670493 Msa0874820:three_prime_UTR
TACCAATAAGTTATTAAGTT+GGG 0.372877 6_1:-10669326 Msa0874820:three_prime_UTR
GAAATATCCGACCAACTAAT+CGG 0.379890 6_1:+10670795 None:intergenic
ACCATCTTTCCTCTTAAGTT+CGG 0.383282 6_1:+10670251 None:intergenic
TTCTTTCTACCGACCAAGTT+AGG 0.387922 6_1:+10670093 None:intergenic
TGAAGTAGCAATGTTGAAAA+TGG 0.393330 6_1:+10673410 None:intergenic
AGGAATTGGAGAAGGAAATT+GGG 0.393486 6_1:+10673532 None:intergenic
TCTTGGTGACTGAAACAATA+AGG 0.397969 6_1:+10671947 None:intergenic
TTCTTAGATATGCTTATCCT+TGG 0.399940 6_1:-10670296 Msa0874820:intron
GGCATACCCTTCAACAACTT+TGG 0.401643 6_1:+10671968 None:intergenic
GAGGACTATGAATAAATTAG+AGG 0.402477 6_1:+10669128 None:intergenic
GAAATTGGGAAGAAGTGAAA+AGG 0.410900 6_1:+10673546 None:intergenic
AATTAGTCCTTTGTAATATG+TGG 0.414122 6_1:-10668919 Msa0874820:three_prime_UTR
AAGATAAGGTGATTCTCTAT+AGG 0.428065 6_1:+10669164 None:intergenic
TCCGAACTTAAGAGGAAAGA+TGG 0.428604 6_1:-10670252 Msa0874820:three_prime_UTR
ATATTTGTTCCAACATATGA+TGG 0.428867 6_1:-10669894 Msa0874820:three_prime_UTR
GCTTGATAAATCGTCTTTCT+GGG 0.431715 6_1:-10671074 Msa0874820:three_prime_UTR
ATACCAATAAGTTATTAAGT+TGG 0.438227 6_1:-10669327 Msa0874820:three_prime_UTR
TCATAAATTCCGAACTTAAG+AGG 0.440724 6_1:-10670260 Msa0874820:three_prime_UTR
GACATTAATTCCTATTTACA+TGG 0.442640 6_1:-10668868 Msa0874820:three_prime_UTR
GAACTTCGCCGGAATCTTAT+CGG 0.444734 6_1:-10673489 Msa0874820:CDS
TATATTATGGTTTCTTGCAA+TGG 0.450179 6_1:-10671285 Msa0874820:three_prime_UTR
TAGATATGAGATGGATATGT+TGG 0.451284 6_1:-10670460 Msa0874820:three_prime_UTR
TTAGATATGCTTATCCTTGG+TGG 0.452084 6_1:-10670293 Msa0874820:intron
TGTAGCGAAGGCTAGTGTTT+CGG 0.452182 6_1:-10671906 Msa0874820:three_prime_UTR
AAATATCCGACCAACTAATC+GGG 0.453315 6_1:+10670796 None:intergenic
ATTGCTGCTGGAGAAATATT+CGG 0.454689 6_1:-10670153 Msa0874820:three_prime_UTR
ACAGTCTCCTCAGGTGTTAA+CGG 0.455013 6_1:+10670222 None:intergenic
CTCGTCACAAATGGCTGCAT+TGG 0.455392 6_1:-10669943 Msa0874820:three_prime_UTR
TTCACTGTTACAGGTAAGAA+AGG 0.456701 6_1:-10670009 Msa0874820:intron
ACGAGCTACTTATCCTAACT+TGG 0.457044 6_1:-10670106 Msa0874820:intron
GCAGATTCCTAGGTTTCAAA+AGG 0.460051 6_1:-10669396 Msa0874820:intron
GTTGTTCAGTTGATCGCAAT+TGG 0.464005 6_1:-10672004 Msa0874820:three_prime_UTR
TCTAATTAAGGCGGCAGAGA+AGG 0.467751 6_1:+10673584 None:intergenic
CCAAAACCACTCGTCACAAA+TGG 0.474386 6_1:-10669952 Msa0874820:three_prime_UTR
ATTCAAATATATATTGCTGC+TGG 0.475124 6_1:-10670165 Msa0874820:three_prime_UTR
TTGGGGTCCAAAGTTGTTGA+AGG 0.477681 6_1:-10671975 Msa0874820:three_prime_UTR
CGTCTTTCTGGGCTGATCCA+AGG 0.478224 6_1:-10671063 Msa0874820:intron
TATCTACATCAAATATGTCT+TGG 0.480238 6_1:+10670916 None:intergenic
AATCACCTTATCTTTGCTAA+AGG 0.482669 6_1:-10669155 Msa0874820:three_prime_UTR
GAAGGCTAGTGTTTCGGCTA+AGG 0.485161 6_1:-10671900 Msa0874820:three_prime_UTR
GGTAAGAAAGGAAACTCTGC+TGG 0.486227 6_1:-10669997 Msa0874820:three_prime_UTR
AAGATTCCGGCGAAGTTCGC+CGG 0.486291 6_1:+10673494 None:intergenic
CATATCTAAGATGAAGTACC+AGG 0.495742 6_1:+10670475 None:intergenic
AAATTGGGAAGAAGTGAAAA+GGG 0.497719 6_1:+10673547 None:intergenic
GCCATGTTTCCATCATATGT+TGG 0.500626 6_1:+10669885 None:intergenic
GAAATCTCATGCCAAGAGGA+TGG 0.502076 6_1:-10669281 Msa0874820:three_prime_UTR
CCAGAGGAAAACATATTTGT+GGG 0.505392 6_1:-10668732 Msa0874820:three_prime_UTR
ACAATATCTTAATCAGAAGT+AGG 0.506935 6_1:+10668460 None:intergenic
AGCTGACTCTTTAAATCATG+TGG 0.510746 6_1:-10668518 Msa0874820:three_prime_UTR
GCCATCCACACTTTGATCCT+CGG 0.511148 6_1:+10672061 None:intergenic
ATTATGGTTTCTTGCAATGG+AGG 0.520069 6_1:-10671282 Msa0874820:three_prime_UTR
ATGAAGTTGTGAAACCTAAG+AGG 0.522783 6_1:-10672096 Msa0874820:three_prime_UTR
CTACAGCTGAAGATGCATCT+TGG 0.524470 6_1:+10671930 None:intergenic
CTAATTAAGGCGGCAGAGAA+GGG 0.526175 6_1:+10673585 None:intergenic
ACCAGAGGAAAACATATTTG+TGG 0.526407 6_1:-10668733 Msa0874820:three_prime_UTR
TCAACTCTTCTCTTGAGCCT+AGG 0.531532 6_1:+10670843 None:intergenic
TGGAAATGCATCAAGTCTGA+AGG 0.533375 6_1:+10669972 None:intergenic
TGGCAAGCATTCATGAGGGT+TGG 0.533454 6_1:+10669198 None:intergenic
AAAGACGATTTATCAAGCTC+TGG 0.540807 6_1:+10671079 None:intergenic
GAAAGCATAATTGAATCTAA+GGG 0.541349 6_1:+10669054 None:intergenic
TTGTAATATGTGGAGAGTCA+TGG 0.542019 6_1:-10668909 Msa0874820:three_prime_UTR
TATTGGTATAAAGATCTATG+AGG 0.542973 6_1:+10669341 None:intergenic
AATCTTATCGGAAAACTCAC+CGG 0.546856 6_1:-10673477 Msa0874820:CDS
AGTATCAGAACAGTCTCCTC+AGG 0.546881 6_1:+10670213 None:intergenic
AACATGGCTAAAGTTGTTGA+AGG 0.552657 6_1:-10669870 Msa0874820:three_prime_UTR
GTGAAGAATAGCGTGAAAAG+AGG 0.556347 6_1:+10669109 None:intergenic
CATTGTGAGGAAATGGAGAT+GGG 0.560789 6_1:-10672139 Msa0874820:three_prime_UTR
ATGTGATAGCAGTGAGGTTG+AGG 0.562002 6_1:-10670415 Msa0874820:three_prime_UTR
CTCTATAGGTCATCTTGAAG+TGG 0.565984 6_1:+10669178 None:intergenic
ATTGTTAGCAAGTCGAGCAT+CGG 0.566533 6_1:+10670620 None:intergenic
GCATGCCTTTAGCAAAGATA+AGG 0.570983 6_1:+10669150 None:intergenic
AAGTTGTTGAAGGACATAGA+AGG 0.571727 6_1:-10669860 Msa0874820:intron
AAATCTCATGCCAAGAGGAT+GGG 0.571821 6_1:-10669280 Msa0874820:three_prime_UTR
AGGTTATCAAAAGTATCTGA+TGG 0.572072 6_1:-10672172 Msa0874820:three_prime_UTR
TGGGGTCCAAAGTTGTTGAA+GGG 0.572393 6_1:-10671974 Msa0874820:three_prime_UTR
ATTGGTATAAAGATCTATGA+GGG 0.573678 6_1:+10669342 None:intergenic
ATGCAGCCATTTGTGACGAG+TGG 0.573964 6_1:+10669946 None:intergenic
ACTTCATCTTAGATATGAGA+TGG 0.574403 6_1:-10670469 Msa0874820:three_prime_UTR
CTAAGATGAAGTACCAGGAA+AGG 0.576609 6_1:+10670480 None:intergenic
TTCAGCTGTAGTTGTAGCGA+AGG 0.578064 6_1:-10671918 Msa0874820:three_prime_UTR
GCCGAGGATCAAAGTGTGGA+TGG 0.578147 6_1:-10672062 Msa0874820:three_prime_UTR
ACTCTTCTCTTGAGCCTAGG+TGG 0.580749 6_1:+10670846 None:intergenic
ATATGCTTATCCTTGGTGGA+AGG 0.581937 6_1:-10670289 Msa0874820:three_prime_UTR
TCATTGTGAGGAAATGGAGA+TGG 0.586151 6_1:-10672140 Msa0874820:three_prime_UTR
ATTCGGTGGAAAGAGAAGAA+TGG 0.589294 6_1:-10670136 Msa0874820:three_prime_UTR
TGAAGTGGCAAGCATTCATG+AGG 0.593182 6_1:+10669193 None:intergenic
TCAACGCATTAAAATTTACT+CGG 0.602768 6_1:+10670565 None:intergenic
TTGAGGAACTCACAAGAATG+AGG 0.605181 6_1:-10670398 Msa0874820:intron
AGAGGTTTGTTGTAAAGCCG+AGG 0.607681 6_1:-10672078 Msa0874820:three_prime_UTR
TTGGGAAGAAGTGAAAAGGG+AGG 0.613735 6_1:+10673550 None:intergenic
TATTTAAAGCAATAGCAAAG+TGG 0.615096 6_1:-10668656 Msa0874820:three_prime_UTR
ACTTCTCAGATAGAACAACT+TGG 0.623653 6_1:-10670537 Msa0874820:three_prime_UTR
ATTCTTCACTACAATCGCGA+TGG 0.625191 6_1:-10669095 Msa0874820:three_prime_UTR
TCCTCTCATACGAAAACACA+AGG 0.636033 6_1:-10670661 Msa0874820:three_prime_UTR
TCCAACATATGATGGAAACA+TGG 0.636574 6_1:-10669886 Msa0874820:three_prime_UTR
AATATCCGACCAACTAATCG+GGG 0.639424 6_1:+10670797 None:intergenic
TTGAGAGGGATTAAAACCAG+AGG 0.642881 6_1:-10668748 Msa0874820:three_prime_UTR
TGACTCTCCACATATTACAA+AGG 0.643105 6_1:+10668912 None:intergenic
GATGCTCGACTTGCTAACAA+TGG 0.647559 6_1:-10670618 Msa0874820:three_prime_UTR
TATTAAAGCAACTACCACCT+AGG 0.652673 6_1:-10670860 Msa0874820:three_prime_UTR
TCTTCTGCAGATATGCGACA+TGG 0.666010 6_1:-10671140 Msa0874820:intron
TAAAGCCGAGGATCAAAGTG+TGG 0.669923 6_1:-10672066 Msa0874820:three_prime_UTR
TTTATGTCCGTTAACACCTG+AGG 0.671972 6_1:-10670229 Msa0874820:three_prime_UTR
AACTTGGTAGAAAGATAGTG+AGG 0.681324 6_1:-10670521 Msa0874820:three_prime_UTR
TGAAGAAATCTCATGCCAAG+AGG 0.682299 6_1:-10669285 Msa0874820:three_prime_UTR
AATGAATGCTCTAATTAAGG+CGG 0.683136 6_1:+10673575 None:intergenic
GAAGTGGCAAGCATTCATGA+GGG 0.699548 6_1:+10669194 None:intergenic
GCTGCTGGAGAAATATTCGG+TGG 0.702946 6_1:-10670150 Msa0874820:three_prime_UTR
TATCACTCTCTAGAGACACA+AGG 0.712319 6_1:+10669916 None:intergenic
TTGGTATAAAGATCTATGAG+GGG 0.718389 6_1:+10669343 None:intergenic
ATATCCGACCAACTAATCGG+GGG 0.718638 6_1:+10670798 None:intergenic
TCATGGATGTGATAGCAGTG+AGG 0.800602 6_1:-10670421 Msa0874820:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTTTTATTTTTTA+AGG - chr6_1:10669746-10669765 Msa0874820:intron 0.0%
!!! TATTATAATTCCTATTTTTA+TGG + chr6_1:10669162-10669181 None:intergenic 10.0%
!! ATAAAAATAGGAATTATAAT+AGG - chr6_1:10669161-10669180 Msa0874820:three_prime_UTR 10.0%
!! TATATAGATATAAAAAACAA+AGG + chr6_1:10669705-10669724 None:intergenic 10.0%
!!! TTTTGAATTTTTGTTATATG+TGG - chr6_1:10668983-10669002 Msa0874820:three_prime_UTR 15.0%
!!! TTGATATTTTGATGTTTTTA+AGG - chr6_1:10669442-10669461 Msa0874820:intron 15.0%
!!! GGGTTTAAAATAAAATAAAA+AGG + chr6_1:10670622-10670641 None:intergenic 15.0%
!! TAAGAATAATGGTTATATTA+TGG - chr6_1:10670738-10670757 Msa0874820:intron 15.0%
!!! AATGAAATAAATATTTTGAG+AGG - chr6_1:10673273-10673292 Msa0874820:intron 15.0%
!!! ATGAAATAAATATTTTGAGA+GGG - chr6_1:10673274-10673293 Msa0874820:intron 15.0%
!!! TACATAAATTTTATGTTTTG+AGG - chr6_1:10673343-10673362 Msa0874820:intron 15.0%
!! ATTCAGAAAATTCTACAAAA+GGG + chr6_1:10668679-10668698 None:intergenic 20.0%
!! AATTCAGAAAATTCTACAAA+AGG + chr6_1:10668680-10668699 None:intergenic 20.0%
!! AAAGATTAATCACTATTCAA+TGG + chr6_1:10668722-10668741 None:intergenic 20.0%
!! ATTATTCCTAGGAATAAATT+TGG + chr6_1:10669055-10669074 None:intergenic 20.0%
!! CTTAACATTATAATATTCCT+GGG - chr6_1:10669134-10669153 Msa0874820:three_prime_UTR 20.0%
!!! AAAAATTTTCCCAAAGAAAA+GGG + chr6_1:10669234-10669253 None:intergenic 20.0%
!!! AGTTTACTAAATTTTATTCC+CGG + chr6_1:10669280-10669299 None:intergenic 20.0%
!! AAATTTCATGCCAAAAAATA+AGG + chr6_1:10669549-10669568 None:intergenic 20.0%
!!! TATTATTTTTGAGAAGTCAA+TGG - chr6_1:10669568-10669587 Msa0874820:intron 20.0%
!!! TTTGATTTGCATTTATTTCA+TGG - chr6_1:10669598-10669617 Msa0874820:intron 20.0%
!!! CTTTTAAGTAAATATACACA+GGG + chr6_1:10670642-10670661 None:intergenic 20.0%
!! TGATAAGAATAAGAATCTTA+TGG - chr6_1:10670676-10670695 Msa0874820:intron 20.0%
!!! ATTTGATAATTCTTTTCATC+AGG - chr6_1:10670709-10670728 Msa0874820:intron 20.0%
!!! TTTGATAATTCTTTTCATCA+GGG - chr6_1:10670710-10670729 Msa0874820:intron 20.0%
!!! GTTTTGTTTTTCTCAAAATT+TGG - chr6_1:10670868-10670887 Msa0874820:three_prime_UTR 20.0%
!!! CACTTTTGTTAGTAATTTTA+TGG - chr6_1:10672398-10672417 Msa0874820:intron 20.0%
!!! TTGTAATTTTGATTCATTCA+AGG - chr6_1:10672523-10672542 Msa0874820:intron 20.0%
!! ATACCAATAAGTTATTAAGT+TGG - chr6_1:10672709-10672728 Msa0874820:intron 20.0%
!! TACCAATAAGTTATTAAGTT+GGG - chr6_1:10672710-10672729 Msa0874820:intron 20.0%
!!! TAAAAATAGTCTTCTTCTTT+TGG + chr6_1:10672816-10672835 None:intergenic 20.0%
!! ACTAAAAAAACTAAATAACG+AGG + chr6_1:10673074-10673093 None:intergenic 20.0%
!! TAACATGAACTAAACATTAA+TGG + chr6_1:10673097-10673116 None:intergenic 20.0%
!!! GGAATTAATGTCATATTTTA+GGG + chr6_1:10673160-10673179 None:intergenic 20.0%
!!! AGGAATTAATGTCATATTTT+AGG + chr6_1:10673161-10673180 None:intergenic 20.0%
! GAAAATGAATGCTCTAATTA+AGG + chr6_1:10668467-10668486 None:intergenic 25.0%
!! ATGTTGAAAATGGTGAATTT+TGG + chr6_1:10668619-10668638 None:intergenic 25.0%
!!! ATTCTACAAAAGGGTTTTTT+TGG + chr6_1:10668670-10668689 None:intergenic 25.0%
!! AATCTGAAATTCTCTCAAAA+GGG + chr6_1:10668747-10668766 None:intergenic 25.0%
!! AAATCTGAAATTCTCTCAAA+AGG + chr6_1:10668748-10668767 None:intergenic 25.0%
!!! TTGTTTTTGAATTCTGTTCT+TGG - chr6_1:10668859-10668878 Msa0874820:three_prime_UTR 25.0%
! AGTTTACCAAATTTATTCCT+AGG - chr6_1:10669046-10669065 Msa0874820:three_prime_UTR 25.0%
! GCTTAACATTATAATATTCC+TGG - chr6_1:10669133-10669152 Msa0874820:three_prime_UTR 25.0%
!! GAAAAATTTTCCCAAAGAAA+AGG + chr6_1:10669235-10669254 None:intergenic 25.0%
!! GTTTACTAAATTTTATTCCC+GGG + chr6_1:10669279-10669298 None:intergenic 25.0%
! AGTAAACTTGTAACAAACAT+AGG - chr6_1:10669292-10669311 Msa0874820:three_prime_UTR 25.0%
!!! AATTTGACCACCTTATTTTT+TGG - chr6_1:10669536-10669555 Msa0874820:intron 25.0%
! AAAAATCAATGATGTTGTTG+AGG - chr6_1:10669844-10669863 Msa0874820:intron 25.0%
!!! ACAACCAAAAACTTACTTTT+TGG + chr6_1:10670173-10670192 None:intergenic 25.0%
! TAGACATCGGTAATAATTTA+AGG - chr6_1:10670258-10670277 Msa0874820:three_prime_UTR 25.0%
! CAGTAAATTGTTGTCAAATA+GGG - chr6_1:10670524-10670543 Msa0874820:three_prime_UTR 25.0%
!!! GCTTTTAAGTAAATATACAC+AGG + chr6_1:10670643-10670662 None:intergenic 25.0%
! GAATAAGAATCTTATGGTAT+TGG - chr6_1:10670682-10670701 Msa0874820:intron 25.0%
! TCAGGGATTTATAAGAATAA+TGG - chr6_1:10670727-10670746 Msa0874820:intron 25.0%
! TATATTATGGTTTCTTGCAA+TGG - chr6_1:10670751-10670770 Msa0874820:intron 25.0%
!!! AATTTTAATGATCGCAACAA+AGG + chr6_1:10670830-10670849 None:intergenic 25.0%
! AAACATCTCCATTTATGATT+AGG - chr6_1:10671041-10671060 Msa0874820:intron 25.0%
! GACATTTCGATTAATAAATC+AGG + chr6_1:10671069-10671088 None:intergenic 25.0%
! TATCTACATCAAATATGTCT+TGG + chr6_1:10671123-10671142 None:intergenic 25.0%
! TCAACGCATTAAAATTTACT+CGG + chr6_1:10671474-10671493 None:intergenic 25.0%
! ATTCAAATATATATTGCTGC+TGG - chr6_1:10671871-10671890 Msa0874820:intron 25.0%
! ATAAACACACATATAACTAG+AGG + chr6_1:10671990-10672009 None:intergenic 25.0%
! ATATTTGTTCCAACATATGA+TGG - chr6_1:10672142-10672161 Msa0874820:three_prime_UTR 25.0%
! TCTAAATAGTACATCATCAA+AGG + chr6_1:10672255-10672274 None:intergenic 25.0%
! ATTACTCAGGTATTAAAATG+AGG - chr6_1:10672289-10672308 Msa0874820:intron 25.0%
! AATAGAGTAGATAGTCATTT+CGG + chr6_1:10672581-10672600 None:intergenic 25.0%
! ATTGGTATAAAGATCTATGA+GGG + chr6_1:10672697-10672716 None:intergenic 25.0%
! TATTGGTATAAAGATCTATG+AGG + chr6_1:10672698-10672717 None:intergenic 25.0%
! ATCCCAACTTAATAACTTAT+TGG + chr6_1:10672715-10672734 None:intergenic 25.0%
!! GAAAGCATAATTGAATCTAA+GGG + chr6_1:10672985-10673004 None:intergenic 25.0%
!! AGAAAGCATAATTGAATCTA+AGG + chr6_1:10672986-10673005 None:intergenic 25.0%
! ATTCAATTATGCTTTCTTCT+TGG - chr6_1:10672989-10673008 Msa0874820:intron 25.0%
! AATTAGTCCTTTGTAATATG+TGG - chr6_1:10673117-10673136 Msa0874820:intron 25.0%
! GACATTAATTCCTATTTACA+TGG - chr6_1:10673168-10673187 Msa0874820:intron 25.0%
! TTGAATTAGTCCATGTAAAT+AGG + chr6_1:10673181-10673200 None:intergenic 25.0%
!! TATTTAAAGCAATAGCAAAG+TGG - chr6_1:10673380-10673399 Msa0874820:intron 25.0%
!! TCTTTTCCTAACTTCAAAAT+TGG - chr6_1:10673476-10673495 Msa0874820:CDS 25.0%
!!! AAAGTACCAATTTTGAAGTT+AGG + chr6_1:10673485-10673504 None:intergenic 25.0%
! ACAATATCTTAATCAGAAGT+AGG + chr6_1:10673579-10673598 None:intergenic 25.0%
AATGAATGCTCTAATTAAGG+CGG + chr6_1:10668464-10668483 None:intergenic 30.0%
AAATTGGGAAGAAGTGAAAA+GGG + chr6_1:10668492-10668511 None:intergenic 30.0%
GAAAAGAAAAAGAGAGGAAT+TGG + chr6_1:10668521-10668540 None:intergenic 30.0%
! ATAAGGGAGATATGATTTTC+CGG + chr6_1:10668581-10668600 None:intergenic 30.0%
TGAAGTAGCAATGTTGAAAA+TGG + chr6_1:10668629-10668648 None:intergenic 30.0%
AAAATCCTTACTTTCCTTCT+GGG - chr6_1:10668776-10668795 Msa0874820:three_prime_UTR 30.0%
!! ATTTAAGTTGCATCCACATA+AGG + chr6_1:10668819-10668838 None:intergenic 30.0%
TCAGAATTCTTAGCTAAAAG+AGG + chr6_1:10668934-10668953 None:intergenic 30.0%
TTCCTAGGAATAATATTCCT+TGG - chr6_1:10669061-10669080 Msa0874820:three_prime_UTR 30.0%
TTCCAAGGAATATTATTCCT+AGG + chr6_1:10669066-10669085 None:intergenic 30.0%
TATTCCTTGGAACATAAAGA+TGG - chr6_1:10669074-10669093 Msa0874820:three_prime_UTR 30.0%
ATTCCTTGGAACATAAAGAT+GGG - chr6_1:10669075-10669094 Msa0874820:three_prime_UTR 30.0%
AAGATGGGAATATTATTCCA+AGG - chr6_1:10669090-10669109 Msa0874820:three_prime_UTR 30.0%
CATCTTTCTTCTAAATACCT+TGG + chr6_1:10669110-10669129 None:intergenic 30.0%
!! TATTCCTATCGTTTTATTCC+CGG - chr6_1:10669321-10669340 Msa0874820:three_prime_UTR 30.0%
TTTCATGCCAAAAAATAAGG+TGG + chr6_1:10669546-10669565 None:intergenic 30.0%
!! AGGTTATCAAAAGTATCTGA+TGG - chr6_1:10669864-10669883 Msa0874820:three_prime_UTR 30.0%
! TCCACCAAAAAGTAAGTTTT+TGG - chr6_1:10670166-10670185 Msa0874820:three_prime_UTR 30.0%
!!! ACCAAAAACTTACTTTTTGG+TGG + chr6_1:10670170-10670189 None:intergenic 30.0%
! CATTACAACTTTTTGTAACG+AGG + chr6_1:10670355-10670374 None:intergenic 30.0%
! TATAAAGGCACGATCTAATT+AGG + chr6_1:10670470-10670489 None:intergenic 30.0%
TAGATCGTGCCTTTATATTA+TGG - chr6_1:10670473-10670492 Msa0874820:three_prime_UTR 30.0%
AACAATTTACTGCACTATCA+TGG + chr6_1:10670516-10670535 None:intergenic 30.0%
GCAGTAAATTGTTGTCAAAT+AGG - chr6_1:10670523-10670542 Msa0874820:three_prime_UTR 30.0%
AATTATGAGTACACTACGTT+TGG - chr6_1:10670846-10670865 Msa0874820:three_prime_UTR 30.0%
ATCAGGAACCTAATCATAAA+TGG + chr6_1:10671052-10671071 None:intergenic 30.0%
TATTTCGTACTACGAAAAAC+AGG - chr6_1:10671258-10671277 Msa0874820:intron 30.0%
!! GAGTAAATTTTAATGCGTTG+AGG - chr6_1:10671473-10671492 Msa0874820:intron 30.0%
! AAAGATAGTGAGGATTTTGA+GGG - chr6_1:10671525-10671544 Msa0874820:intron 30.0%
ACTTCATCTTAGATATGAGA+TGG - chr6_1:10671567-10671586 Msa0874820:intron 30.0%
TAGATATGAGATGGATATGT+TGG - chr6_1:10671576-10671595 Msa0874820:intron 30.0%
TTCTTAGATATGCTTATCCT+TGG - chr6_1:10671740-10671759 Msa0874820:intron 30.0%
TCATAAATTCCGAACTTAAG+AGG - chr6_1:10671776-10671795 Msa0874820:intron 30.0%
TTTATTTGCTTCACTGTTAC+AGG - chr6_1:10672018-10672037 Msa0874820:three_prime_UTR 30.0%
TGCATGATAAATCATTACTC+AGG - chr6_1:10672276-10672295 Msa0874820:intron 30.0%
! AAATGAGGAAATCGTCATTT+TGG - chr6_1:10672304-10672323 Msa0874820:intron 30.0%
!! AATGAGGAAATCGTCATTTT+GGG - chr6_1:10672305-10672324 Msa0874820:intron 30.0%
! TGTCATTTCAATGCATTTGA+CGG + chr6_1:10672361-10672380 None:intergenic 30.0%
! TCTAAGATCAAACCAACTAA+CGG - chr6_1:10672447-10672466 Msa0874820:intron 30.0%
TTGGTATAAAGATCTATGAG+GGG + chr6_1:10672696-10672715 None:intergenic 30.0%
! TTGGGATGAATTTTCCATTA+AGG - chr6_1:10672728-10672747 Msa0874820:intron 30.0%
ATGAGATTTCTTCACCTTAA+TGG + chr6_1:10672745-10672764 None:intergenic 30.0%
! GGATGATAACTCTTCTTTTT+GGG + chr6_1:10672785-10672804 None:intergenic 30.0%
! CTTCTTCTTTTGGTCTATTT+GGG + chr6_1:10672806-10672825 None:intergenic 30.0%
! TCTTCTTCTTTTGGTCTATT+TGG + chr6_1:10672807-10672826 None:intergenic 30.0%
AAGATAAGGTGATTCTCTAT+AGG + chr6_1:10672875-10672894 None:intergenic 30.0%
AATCACCTTATCTTTGCTAA+AGG - chr6_1:10672881-10672900 Msa0874820:intron 30.0%
GAGGACTATGAATAAATTAG+AGG + chr6_1:10672911-10672930 None:intergenic 30.0%
AAGAGTCAGCTATGAATATT+TGG + chr6_1:10673509-10673528 None:intergenic 30.0%
GAAATTGGGAAGAAGTGAAA+AGG + chr6_1:10668493-10668512 None:intergenic 35.0%
AGGAATTGGAGAAGGAAATT+GGG + chr6_1:10668507-10668526 None:intergenic 35.0%
AAAAAGAGAGGAATTGGAGA+AGG + chr6_1:10668515-10668534 None:intergenic 35.0%
! TCCTCTCTTTTTCTTTTCTC+CGG - chr6_1:10668523-10668542 Msa0874820:three_prime_UTR 35.0%
! TGAGTTTTCCGATAAGATTC+CGG + chr6_1:10668558-10668577 None:intergenic 35.0%
AATCTTATCGGAAAACTCAC+CGG - chr6_1:10668559-10668578 Msa0874820:three_prime_UTR 35.0%
GAAGTTGAGTGTGGTTATAA+GGG + chr6_1:10668597-10668616 None:intergenic 35.0%
!! TGAATTTTGGAAGTTGAGTG+TGG + chr6_1:10668606-10668625 None:intergenic 35.0%
CAAAATCCTTACTTTCCTTC+TGG - chr6_1:10668775-10668794 Msa0874820:three_prime_UTR 35.0%
AAATCCTTACTTTCCTTCTG+GGG - chr6_1:10668777-10668796 Msa0874820:three_prime_UTR 35.0%
ATTCCCATCTTTATGTTCCA+AGG + chr6_1:10669081-10669100 None:intergenic 35.0%
TTCCTGGGAACCATAAAAAT+AGG - chr6_1:10669149-10669168 Msa0874820:three_prime_UTR 35.0%
!!! TTCCTATTTTTATGGTTCCC+AGG + chr6_1:10669154-10669173 None:intergenic 35.0%
TGAATTTATTCCCATCTCCA+TGG - chr6_1:10669194-10669213 Msa0874820:three_prime_UTR 35.0%
GAATTTATTCCCATCTCCAT+GGG - chr6_1:10669195-10669214 Msa0874820:three_prime_UTR 35.0%
AATAAAGTTCCCATGGAGAT+GGG + chr6_1:10669207-10669226 None:intergenic 35.0%
! TTTATTCCCACCCTTTTCTT+TGG - chr6_1:10669221-10669240 Msa0874820:three_prime_UTR 35.0%
! TTATTCCCACCCTTTTCTTT+GGG - chr6_1:10669222-10669241 Msa0874820:three_prime_UTR 35.0%
! ATTTTCCCAAAGAAAAGGGT+GGG + chr6_1:10669230-10669249 None:intergenic 35.0%
! AATTTTCCCAAAGAAAAGGG+TGG + chr6_1:10669231-10669250 None:intergenic 35.0%
! GGGAAAATTTTTCTATTCCC+AGG - chr6_1:10669242-10669261 Msa0874820:three_prime_UTR 35.0%
!! ATTCCTATCGTTTTATTCCC+GGG - chr6_1:10669322-10669341 Msa0874820:three_prime_UTR 35.0%
AAGTTATCTTCGTAGATTCC+CGG + chr6_1:10669343-10669362 None:intergenic 35.0%
!! TGTTGATGATGCTTGAAGTT+AGG + chr6_1:10669633-10669652 None:intergenic 35.0%
TGGAAAAAGTGATCATTGTG+AGG - chr6_1:10669884-10669903 Msa0874820:three_prime_UTR 35.0%
AAGTGATCATTGTGAGGAAA+TGG - chr6_1:10669890-10669909 Msa0874820:three_prime_UTR 35.0%
!! ATGGGATTCAATGTTTTGAG+TGG - chr6_1:10669915-10669934 Msa0874820:three_prime_UTR 35.0%
ATGAAGTTGTGAAACCTAAG+AGG - chr6_1:10669940-10669959 Msa0874820:three_prime_UTR 35.0%
CGATTACTACTGTGATTCTT+TGG - chr6_1:10670003-10670022 Msa0874820:intron 35.0%
! TCTTGGTGACTGAAACAATA+AGG + chr6_1:10670092-10670111 None:intergenic 35.0%
TATGTTTGAGCCATATATCG+TGG - chr6_1:10670389-10670408 Msa0874820:intron 35.0%
AAGACGTTTCTGCAATATCA+TGG + chr6_1:10670432-10670451 None:intergenic 35.0%
TCGTGCCTTTATATTATGGT+TGG - chr6_1:10670477-10670496 Msa0874820:three_prime_UTR 35.0%
CGTGCCTTTATATTATGGTT+GGG - chr6_1:10670478-10670497 Msa0874820:three_prime_UTR 35.0%
GTGCCTTTATATTATGGTTG+GGG - chr6_1:10670479-10670498 Msa0874820:three_prime_UTR 35.0%
CTTTATATTATGGTTGGGGT+CGG - chr6_1:10670483-10670502 Msa0874820:three_prime_UTR 35.0%
ATTATGGTTTCTTGCAATGG+AGG - chr6_1:10670754-10670773 Msa0874820:intron 35.0%
GGTAACTAATGCTAAGTACT+TGG + chr6_1:10670809-10670828 None:intergenic 35.0%
AAAGACGATTTATCAAGCTC+TGG + chr6_1:10670960-10670979 None:intergenic 35.0%
AGCTTGATAAATCGTCTTTC+TGG - chr6_1:10670961-10670980 Msa0874820:intron 35.0%
GCTTGATAAATCGTCTTTCT+GGG - chr6_1:10670962-10670981 Msa0874820:intron 35.0%
TATTAAAGCAACTACCACCT+AGG - chr6_1:10671176-10671195 Msa0874820:intron 35.0%
CTCAAGAGAAGAGTTGAATT+AGG - chr6_1:10671199-10671218 Msa0874820:intron 35.0%
AAATATCCGACCAACTAATC+GGG + chr6_1:10671243-10671262 None:intergenic 35.0%
GAAATATCCGACCAACTAAT+CGG + chr6_1:10671244-10671263 None:intergenic 35.0%
!!! CTCAACTTTTGAAGCTCAAT+AGG + chr6_1:10671448-10671467 None:intergenic 35.0%
ACTTCTCAGATAGAACAACT+TGG - chr6_1:10671499-10671518 Msa0874820:intron 35.0%
AACTTGGTAGAAAGATAGTG+AGG - chr6_1:10671515-10671534 Msa0874820:intron 35.0%
! GAAAGATAGTGAGGATTTTG+AGG - chr6_1:10671524-10671543 Msa0874820:intron 35.0%
! CATATCTAAGATGAAGTACC+AGG + chr6_1:10671564-10671583 None:intergenic 35.0%
TTAGATATGCTTATCCTTGG+TGG - chr6_1:10671743-10671762 Msa0874820:intron 35.0%
ACCATCTTTCCTCTTAAGTT+CGG + chr6_1:10671788-10671807 None:intergenic 35.0%
ATTGCTGCTGGAGAAATATT+CGG - chr6_1:10671883-10671902 Msa0874820:three_prime_UTR 35.0%
TTCACTGTTACAGGTAAGAA+AGG - chr6_1:10672027-10672046 Msa0874820:three_prime_UTR 35.0%
! TCCAACATATGATGGAAACA+TGG - chr6_1:10672150-10672169 Msa0874820:three_prime_UTR 35.0%
AACATGGCTAAAGTTGTTGA+AGG - chr6_1:10672166-10672185 Msa0874820:three_prime_UTR 35.0%
AAGTTGTTGAAGGACATAGA+AGG - chr6_1:10672176-10672195 Msa0874820:three_prime_UTR 35.0%
TAGTACATCATCAAAGGATG+AGG + chr6_1:10672249-10672268 None:intergenic 35.0%
ACTAACAAAAGTGACACACA+GGG + chr6_1:10672391-10672410 None:intergenic 35.0%
TACTAACAAAAGTGACACAC+AGG + chr6_1:10672392-10672411 None:intergenic 35.0%
!!! TGAAAGTGTTTTCCGTTAGT+TGG + chr6_1:10672462-10672481 None:intergenic 35.0%
TACAAATGTGTCTTTCCTTG+GGG + chr6_1:10672497-10672516 None:intergenic 35.0%
CTACAAATGTGTCTTTCCTT+GGG + chr6_1:10672498-10672517 None:intergenic 35.0%
TCTACAAATGTGTCTTTCCT+TGG + chr6_1:10672499-10672518 None:intergenic 35.0%
TGATTCATTCAAGGACTCTA+CGG - chr6_1:10672532-10672551 Msa0874820:intron 35.0%
! TTCATTTTCTGCAGATTCCT+AGG - chr6_1:10672630-10672649 Msa0874820:intron 35.0%
!!! GTATAGTCCTTTTGAAACCT+AGG + chr6_1:10672650-10672669 None:intergenic 35.0%
! GGGATGATAACTCTTCTTTT+TGG + chr6_1:10672786-10672805 None:intergenic 35.0%
TGACTCTCCACATATTACAA+AGG + chr6_1:10673127-10673146 None:intergenic 35.0%
TTGTAATATGTGGAGAGTCA+TGG - chr6_1:10673127-10673146 Msa0874820:intron 35.0%
ACCAGAGGAAAACATATTTG+TGG - chr6_1:10673303-10673322 Msa0874820:intron 35.0%
CCAGAGGAAAACATATTTGT+GGG - chr6_1:10673304-10673323 Msa0874820:intron 35.0%
! AGCTGACTCTTTAAATCATG+TGG - chr6_1:10673518-10673537 Msa0874820:CDS 35.0%
! AGAAAAATGCTGAAGTGTCT+TGG - chr6_1:10673551-10673570 Msa0874820:CDS 35.0%
GAGGAATTGGAGAAGGAAAT+TGG + chr6_1:10668508-10668527 None:intergenic 40.0%
GGAAGTTGAGTGTGGTTATA+AGG + chr6_1:10668598-10668617 None:intergenic 40.0%
AATCCTTACTTTCCTTCTGG+GGG - chr6_1:10668778-10668797 Msa0874820:three_prime_UTR 40.0%
AAGTTGCATCCACATAAGGT+TGG + chr6_1:10668815-10668834 None:intergenic 40.0%
GAATAAAGTTCCCATGGAGA+TGG + chr6_1:10669208-10669227 None:intergenic 40.0%
ATTCCCGGGAATAAAACGAT+AGG + chr6_1:10669328-10669347 None:intergenic 40.0%
AGTTATCTTCGTAGATTCCC+GGG + chr6_1:10669342-10669361 None:intergenic 40.0%
ACTCAAAACATTGCCTTGTC+TGG - chr6_1:10669505-10669524 Msa0874820:intron 40.0%
AAAACATTGCCTTGTCTGGT+GGG - chr6_1:10669509-10669528 Msa0874820:intron 40.0%
GTGAAGCTCAAGCAAGTAAT+TGG - chr6_1:10669795-10669814 Msa0874820:intron 40.0%
TCATTGTGAGGAAATGGAGA+TGG - chr6_1:10669896-10669915 Msa0874820:three_prime_UTR 40.0%
CATTGTGAGGAAATGGAGAT+GGG - chr6_1:10669897-10669916 Msa0874820:three_prime_UTR 40.0%
GGCTTTACAACAAACCTCTT+AGG + chr6_1:10669957-10669976 None:intergenic 40.0%
GTTGTTCAGTTGATCGCAAT+TGG - chr6_1:10670032-10670051 Msa0874820:intron 40.0%
! TGATCGCAATTGGTGAGTTT+TGG - chr6_1:10670042-10670061 Msa0874820:intron 40.0%
! GATCGCAATTGGTGAGTTTT+GGG - chr6_1:10670043-10670062 Msa0874820:intron 40.0%
! ATCGCAATTGGTGAGTTTTG+GGG - chr6_1:10670044-10670063 Msa0874820:intron 40.0%
!! CTTTACGAACTTTGAAGCAC+CGG - chr6_1:10670231-10670250 Msa0874820:three_prime_UTR 40.0%
TATTACCGATGTCTATGTGC+CGG + chr6_1:10670253-10670272 None:intergenic 40.0%
! CCTAAATAGTGTAGCACTGA+TGG + chr6_1:10670326-10670345 None:intergenic 40.0%
CCATCAGTGCTACACTATTT+AGG - chr6_1:10670323-10670342 Msa0874820:intron 40.0%
CGACCCCAACCATAATATAA+AGG + chr6_1:10670485-10670504 None:intergenic 40.0%
CAAGAACAATGTGCAAACCT+TGG + chr6_1:10670993-10671012 None:intergenic 40.0%
AATATCCGACCAACTAATCG+GGG + chr6_1:10671242-10671261 None:intergenic 40.0%
TCCTCTCATACGAAAACACA+AGG - chr6_1:10671375-10671394 Msa0874820:intron 40.0%
! ACCTTGTGTTTTCGTATGAG+AGG + chr6_1:10671379-10671398 None:intergenic 40.0%
ATTGTTAGCAAGTCGAGCAT+CGG + chr6_1:10671419-10671438 None:intergenic 40.0%
! CTAAGATGAAGTACCAGGAA+AGG + chr6_1:10671559-10671578 None:intergenic 40.0%
!! ATGGATATGTTGGCTTTCTC+TGG - chr6_1:10671586-10671605 Msa0874820:intron 40.0%
TTGAGGAACTCACAAGAATG+AGG - chr6_1:10671638-10671657 Msa0874820:intron 40.0%
ATATGCTTATCCTTGGTGGA+AGG - chr6_1:10671747-10671766 Msa0874820:intron 40.0%
!! ATGACTTTTTCCTTCCACCA+AGG + chr6_1:10671760-10671779 None:intergenic 40.0%
TCCGAACTTAAGAGGAAAGA+TGG - chr6_1:10671784-10671803 Msa0874820:intron 40.0%
TTTATGTCCGTTAACACCTG+AGG - chr6_1:10671807-10671826 Msa0874820:intron 40.0%
! ATTCGGTGGAAAGAGAAGAA+TGG - chr6_1:10671900-10671919 Msa0874820:three_prime_UTR 40.0%
ACGAGCTACTTATCCTAACT+TGG - chr6_1:10671930-10671949 Msa0874820:three_prime_UTR 40.0%
GCTACTTATCCTAACTTGGT+CGG - chr6_1:10671934-10671953 Msa0874820:three_prime_UTR 40.0%
TTCTTTCTACCGACCAAGTT+AGG + chr6_1:10671946-10671965 None:intergenic 40.0%
ATAACTAGAGGCAGACAGAT+AGG + chr6_1:10671978-10671997 None:intergenic 40.0%
TGGAAATGCATCAAGTCTGA+AGG + chr6_1:10672067-10672086 None:intergenic 40.0%
! TATCACTCTCTAGAGACACA+AGG + chr6_1:10672123-10672142 None:intergenic 40.0%
GCCATGTTTCCATCATATGT+TGG + chr6_1:10672154-10672173 None:intergenic 40.0%
GCAGATTCCTAGGTTTCAAA+AGG - chr6_1:10672640-10672659 Msa0874820:intron 40.0%
TGAAGAAATCTCATGCCAAG+AGG - chr6_1:10672751-10672770 Msa0874820:intron 40.0%
AAATCTCATGCCAAGAGGAT+GGG - chr6_1:10672756-10672775 Msa0874820:intron 40.0%
CTCTATAGGTCATCTTGAAG+TGG + chr6_1:10672861-10672880 None:intergenic 40.0%
GCATGCCTTTAGCAAAGATA+AGG + chr6_1:10672889-10672908 None:intergenic 40.0%
GTGAAGAATAGCGTGAAAAG+AGG + chr6_1:10672930-10672949 None:intergenic 40.0%
ATTCTTCACTACAATCGCGA+TGG - chr6_1:10672941-10672960 Msa0874820:intron 40.0%
TTGAGAGGGATTAAAACCAG+AGG - chr6_1:10673288-10673307 Msa0874820:intron 40.0%
! CCCACAAATATGTTTTCCTC+TGG + chr6_1:10673307-10673326 None:intergenic 40.0%
CTAATTAAGGCGGCAGAGAA+GGG + chr6_1:10668454-10668473 None:intergenic 45.0%
TCTAATTAAGGCGGCAGAGA+AGG + chr6_1:10668455-10668474 None:intergenic 45.0%
TTGGGAAGAAGTGAAAAGGG+AGG + chr6_1:10668489-10668508 None:intergenic 45.0%
GCCGGAGAAAAGAAAAAGAG+AGG + chr6_1:10668527-10668546 None:intergenic 45.0%
GAACTTCGCCGGAATCTTAT+CGG - chr6_1:10668547-10668566 Msa0874820:three_prime_UTR 45.0%
ATCCTTACTTTCCTTCTGGG+GGG - chr6_1:10668779-10668798 Msa0874820:three_prime_UTR 45.0%
CGTCATTCTCCAACCTTATG+TGG - chr6_1:10668803-10668822 Msa0874820:three_prime_UTR 45.0%
!! TCCCAGGAACGTTTTATTCC+CGG - chr6_1:10669258-10669277 Msa0874820:three_prime_UTR 45.0%
CAAAACATTGCCTTGTCTGG+TGG - chr6_1:10669508-10669527 Msa0874820:intron 45.0%
AAACATTGCCTTGTCTGGTG+GGG - chr6_1:10669510-10669529 Msa0874820:intron 45.0%
!! AGAGGTTTGTTGTAAAGCCG+AGG - chr6_1:10669958-10669977 Msa0874820:three_prime_UTR 45.0%
TAAAGCCGAGGATCAAAGTG+TGG - chr6_1:10669970-10669989 Msa0874820:three_prime_UTR 45.0%
TTGGGGTCCAAAGTTGTTGA+AGG - chr6_1:10670061-10670080 Msa0874820:intron 45.0%
TGGGGTCCAAAGTTGTTGAA+GGG - chr6_1:10670062-10670081 Msa0874820:intron 45.0%
GGCATACCCTTCAACAACTT+TGG + chr6_1:10670071-10670090 None:intergenic 45.0%
CTACAGCTGAAGATGCATCT+TGG + chr6_1:10670109-10670128 None:intergenic 45.0%
TTCAGCTGTAGTTGTAGCGA+AGG - chr6_1:10670118-10670137 Msa0874820:three_prime_UTR 45.0%
TGTAGCGAAGGCTAGTGTTT+CGG - chr6_1:10670130-10670149 Msa0874820:three_prime_UTR 45.0%
AAAGCGATTGAATGCGACTG+TGG - chr6_1:10670286-10670305 Msa0874820:three_prime_UTR 45.0%
AAGCGATTGAATGCGACTGT+GGG - chr6_1:10670287-10670306 Msa0874820:three_prime_UTR 45.0%
CAGACTGTGACCACGATATA+TGG + chr6_1:10670402-10670421 None:intergenic 45.0%
AACTCACTGCTGCTCTCATT+TGG + chr6_1:10670786-10670805 None:intergenic 45.0%
TCTTCTGCAGATATGCGACA+TGG - chr6_1:10670896-10670915 Msa0874820:three_prime_UTR 45.0%
TGGAACTCACTGCAACATCA+AGG + chr6_1:10671103-10671122 None:intergenic 45.0%
TCAACTCTTCTCTTGAGCCT+AGG + chr6_1:10671196-10671215 None:intergenic 45.0%
ATATCCGACCAACTAATCGG+GGG + chr6_1:10671241-10671260 None:intergenic 45.0%
!!! GTCGAGCATCGGTTTTATTG+AGG + chr6_1:10671408-10671427 None:intergenic 45.0%
!! GATGCTCGACTTGCTAACAA+TGG - chr6_1:10671418-10671437 Msa0874820:intron 45.0%
!! GTGAGGATTTTGAGGGAAAG+AGG - chr6_1:10671532-10671551 Msa0874820:intron 45.0%
TCATGGATGTGATAGCAGTG+AGG - chr6_1:10671615-10671634 Msa0874820:intron 45.0%
ATGTGATAGCAGTGAGGTTG+AGG - chr6_1:10671621-10671640 Msa0874820:intron 45.0%
ACAGTCTCCTCAGGTGTTAA+CGG + chr6_1:10671817-10671836 None:intergenic 45.0%
AGTATCAGAACAGTCTCCTC+AGG + chr6_1:10671826-10671845 None:intergenic 45.0%
GGTAAGAAAGGAAACTCTGC+TGG - chr6_1:10672039-10672058 Msa0874820:three_prime_UTR 45.0%
! CCATTTGTGACGAGTGGTTT+TGG + chr6_1:10672087-10672106 None:intergenic 45.0%
CCAAAACCACTCGTCACAAA+TGG - chr6_1:10672084-10672103 Msa0874820:three_prime_UTR 45.0%
! TTTTGGGCCTTAAATGTGCG+AGG - chr6_1:10672321-10672340 Msa0874820:intron 45.0%
TCAAAGAACCAAACTCCCCA+AGG - chr6_1:10672479-10672498 Msa0874820:intron 45.0%
GAAATCTCATGCCAAGAGGA+TGG - chr6_1:10672755-10672774 Msa0874820:intron 45.0%
!!! TTTTGGGTTTCCCATCCTCT+TGG + chr6_1:10672769-10672788 None:intergenic 45.0%
GAAGTGGCAAGCATTCATGA+GGG + chr6_1:10672845-10672864 None:intergenic 45.0%
TGAAGTGGCAAGCATTCATG+AGG + chr6_1:10672846-10672865 None:intergenic 45.0%
GGGTGGGAATAAAGTTCCCA+TGG + chr6_1:10669214-10669233 None:intergenic 50.0%
CCCGGGAATAAAACGTTCCT+GGG + chr6_1:10669262-10669281 None:intergenic 50.0%
!! CCCAGGAACGTTTTATTCCC+GGG - chr6_1:10669259-10669278 Msa0874820:three_prime_UTR 50.0%
TCCCGGGAATAAAACGTTCC+TGG + chr6_1:10669263-10669282 None:intergenic 50.0%
AAATTCCACCCCACCAGACA+AGG + chr6_1:10669521-10669540 None:intergenic 50.0%
GCCATCCACACTTTGATCCT+CGG + chr6_1:10669978-10669997 None:intergenic 50.0%
GAAGGCTAGTGTTTCGGCTA+AGG - chr6_1:10670136-10670155 Msa0874820:three_prime_UTR 50.0%
!! AAGCACCGGCACATAGACAT+CGG - chr6_1:10670245-10670264 Msa0874820:three_prime_UTR 50.0%
GATTGAATGCGACTGTGGGT+CGG - chr6_1:10670291-10670310 Msa0874820:three_prime_UTR 50.0%
ACTCTTCTCTTGAGCCTAGG+TGG + chr6_1:10671193-10671212 None:intergenic 50.0%
ACTCATTGCCCCCGATTAGT+TGG - chr6_1:10671230-10671249 Msa0874820:intron 50.0%
! ATTGCCCCCGATTAGTTGGT+CGG - chr6_1:10671234-10671253 Msa0874820:intron 50.0%
GCTGCTGGAGAAATATTCGG+TGG - chr6_1:10671886-10671905 Msa0874820:three_prime_UTR 50.0%
ATGCAGCCATTTGTGACGAG+TGG + chr6_1:10672093-10672112 None:intergenic 50.0%
CTCGTCACAAATGGCTGCAT+TGG - chr6_1:10672093-10672112 Msa0874820:three_prime_UTR 50.0%
GTGTCTTTCCTTGGGGAGTT+TGG + chr6_1:10672490-10672509 None:intergenic 50.0%
GACAGCGTTCGACACATTCA+AGG - chr6_1:10672554-10672573 Msa0874820:intron 50.0%
TGGCAAGCATTCATGAGGGT+TGG + chr6_1:10672841-10672860 None:intergenic 50.0%
! TTTTCTCCGGCGAACTTCGC+CGG - chr6_1:10668536-10668555 Msa0874820:three_prime_UTR 55.0%
AAGATTCCGGCGAAGTTCGC+CGG + chr6_1:10668545-10668564 None:intergenic 55.0%
GACCCCCCAGAAGGAAAGTA+AGG + chr6_1:10668784-10668803 None:intergenic 55.0%
GCCGAGGATCAAAGTGTGGA+TGG - chr6_1:10669974-10669993 Msa0874820:three_prime_UTR 55.0%
CGTCTTTCTGGGCTGATCCA+AGG - chr6_1:10670973-10670992 Msa0874820:intron 55.0%
GAGGGAAAGAGGACCTTTCC+TGG - chr6_1:10671543-10671562 Msa0874820:intron 55.0%
GCTTTCTCTGGCTGCACTCA+TGG - chr6_1:10671598-10671617 Msa0874820:intron 55.0%
TGGGCCTTAAATGTGCGAGG+CGG - chr6_1:10672324-10672343 Msa0874820:intron 55.0%
GACACCGCCTCGCACATTTA+AGG + chr6_1:10672331-10672350 None:intergenic 55.0%
GAGAATGACGACCCCCCAGA+AGG + chr6_1:10668793-10668812 None:intergenic 60.0%
CATTGCCTTGTCTGGTGGGG+TGG - chr6_1:10669513-10669532 Msa0874820:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 10668445 10673613 10668445 ID=Msa0874820;Name=Msa0874820
chr6_1 mRNA 10668445 10673613 10668445 ID=Msa0874820-mRNA-1;Parent=Msa0874820;Name=Msa0874820-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.87|0.88|1|0.87|0.77|9|2341|75
chr6_1 exon 10668445 10669414 10668445 ID=Msa0874820-mRNA-1:exon:3323;Parent=Msa0874820-mRNA-1
chr6_1 exon 10669861 10670018 10669861 ID=Msa0874820-mRNA-1:exon:3322;Parent=Msa0874820-mRNA-1
chr6_1 exon 10670107 10670311 10670107 ID=Msa0874820-mRNA-1:exon:3321;Parent=Msa0874820-mRNA-1
chr6_1 exon 10670399 10670688 10670399 ID=Msa0874820-mRNA-1:exon:3320;Parent=Msa0874820-mRNA-1
chr6_1 exon 10670779 10670944 10670779 ID=Msa0874820-mRNA-1:exon:3319;Parent=Msa0874820-mRNA-1
chr6_1 exon 10671064 10671152 10671064 ID=Msa0874820-mRNA-1:exon:3318;Parent=Msa0874820-mRNA-1
chr6_1 exon 10671260 10671327 10671260 ID=Msa0874820-mRNA-1:exon:3317;Parent=Msa0874820-mRNA-1
chr6_1 exon 10671882 10672290 10671882 ID=Msa0874820-mRNA-1:exon:3316;Parent=Msa0874820-mRNA-1
chr6_1 exon 10673400 10673613 10673400 ID=Msa0874820-mRNA-1:exon:3315;Parent=Msa0874820-mRNA-1
chr6_1 CDS 10673400 10673613 10673400 ID=Msa0874820-mRNA-1:cds;Parent=Msa0874820-mRNA-1
chr6_1 CDS 10672277 10672290 10672277 ID=Msa0874820-mRNA-1:cds;Parent=Msa0874820-mRNA-1
chr6_1 three_prime_UTR 10671882 10672276 10671882 ID=Msa0874820-mRNA-1:three_prime_utr;Parent=Msa0874820-mRNA-1
chr6_1 three_prime_UTR 10671260 10671327 10671260 ID=Msa0874820-mRNA-1:three_prime_utr;Parent=Msa0874820-mRNA-1
chr6_1 three_prime_UTR 10671064 10671152 10671064 ID=Msa0874820-mRNA-1:three_prime_utr;Parent=Msa0874820-mRNA-1
chr6_1 three_prime_UTR 10670779 10670944 10670779 ID=Msa0874820-mRNA-1:three_prime_utr;Parent=Msa0874820-mRNA-1
chr6_1 three_prime_UTR 10670399 10670688 10670399 ID=Msa0874820-mRNA-1:three_prime_utr;Parent=Msa0874820-mRNA-1
chr6_1 three_prime_UTR 10670107 10670311 10670107 ID=Msa0874820-mRNA-1:three_prime_utr;Parent=Msa0874820-mRNA-1
chr6_1 three_prime_UTR 10669861 10670018 10669861 ID=Msa0874820-mRNA-1:three_prime_utr;Parent=Msa0874820-mRNA-1
chr6_1 three_prime_UTR 10668445 10669414 10668445 ID=Msa0874820-mRNA-1:three_prime_utr;Parent=Msa0874820-mRNA-1
Gene Sequence

>Msa0874820

ATGACACCCTTCTCTGCCGCCTTAATTAGAGCATTCATTTTCCTCCCTTTTCACTTCTTCCCAATTTCCTTCTCCAATTCCTCTCTTTTTCTTTTCTCCGGCGAACTTCGCCGGAATCTTATCGGAAAACTCACCGGAAAATCATATCTCCCTTATAACCACACTCAACTTCCAAAATTCACCATTTTCAACATTGCTACTTCAACTTCTTCAAGCTTTGATTGTTGA
Protein sequence

>Msa0874820

MTPFSAALIRAFIFLPFHFFPISFSNSSLFLFSGELRRNLIGKLTGKSYLPYNHTQLPKFTIFNIATSTSSSFDC*