Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978950 | XP_013451319.1 | 94.111 | 883 | 52 | 0 | 1 | 883 | 1 | 883 | 0.0 | 1603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978950 | A0A072U6K8 | 94.111 | 883 | 52 | 0 | 1 | 883 | 1 | 883 | 0.0 | 1603 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002580 | Msa0978950 | 0.801521 | 8.656737e-49 | -8.615850e-47 |
| Msa0005890 | Msa0978950 | 0.809718 | 1.647075e-50 | -8.615850e-47 |
| Msa0616070 | Msa0978950 | 0.809005 | 2.343316e-50 | -8.615850e-47 |
| Msa0721080 | Msa0978950 | 0.803223 | 3.862665e-49 | -8.615850e-47 |
| Msa0829300 | Msa0978950 | 0.808189 | 3.500563e-50 | -8.615850e-47 |
| Msa0829330 | Msa0978950 | 0.814438 | 1.541009e-51 | -8.615850e-47 |
| Msa0225860 | Msa0978950 | 0.810409 | 1.169256e-50 | -8.615850e-47 |
| Msa0266180 | Msa0978950 | 0.806876 | 6.648843e-50 | -8.615850e-47 |
| Msa0279690 | Msa0978950 | 0.803487 | 3.406016e-49 | -8.615850e-47 |
| Msa0287740 | Msa0978950 | 0.800742 | 1.249729e-48 | -8.615850e-47 |
| Msa0321620 | Msa0978950 | 0.822532 | 2.252726e-53 | -8.615850e-47 |
| Msa0531180 | Msa0978950 | 0.811331 | 7.386772e-51 | -8.615850e-47 |
| Msa0876550 | Msa0978950 | 0.892657 | 1.296845e-74 | -8.615850e-47 |
| Msa0876560 | Msa0978950 | 0.814429 | 1.547363e-51 | -8.615850e-47 |
| Msa0906940 | Msa0978950 | 0.802866 | 4.577167e-49 | -8.615850e-47 |
| Msa0978950 | Msa1004840 | 0.827848 | 1.247316e-54 | -8.615850e-47 |
| Msa0978950 | Msa1019470 | 0.802540 | 5.344185e-49 | -8.615850e-47 |
| Msa0978950 | Msa1032850 | 0.801689 | 7.998292e-49 | -8.615850e-47 |
| Msa0978950 | Msa1050340 | 0.812338 | 4.458168e-51 | -8.615850e-47 |
| Msa0978950 | Msa1101090 | 0.801207 | 1.004199e-48 | -8.615850e-47 |
| Msa0978950 | Msa1103990 | 0.806539 | 7.833364e-50 | -8.615850e-47 |
| Msa0978950 | Msa1132840 | 0.800374 | 1.485016e-48 | -8.615850e-47 |
| Msa0978950 | Msa1186020 | 0.802627 | 5.128874e-49 | -8.615850e-47 |
| Msa0978950 | Msa1204040 | 0.800471 | 1.419386e-48 | -8.615850e-47 |
| Msa0978950 | Msa1205280 | 0.814317 | 1.638080e-51 | -8.615850e-47 |
| Msa0978950 | Msa1265650 | 0.802570 | 5.268820e-49 | -8.615850e-47 |
| Msa0978950 | Msa1297230 | 0.801180 | 1.016904e-48 | -8.615850e-47 |
| Msa0978950 | Msa1314650 | 0.811951 | 5.414364e-51 | -8.615850e-47 |
| Msa0978950 | Msa1343430 | 0.814704 | 1.345368e-51 | -8.615850e-47 |
| Msa0978950 | Msa1412050 | 0.800124 | 1.669812e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978950 | MtrunA17_Chr6g0457761 | 94.111 | 883 | 52 | 0 | 1 | 883 | 1 | 883 | 0.0 | 1603 |
| Msa0978950 | MtrunA17_Chr7g0250831 | 48.460 | 974 | 373 | 34 | 1 | 881 | 1 | 938 | 0.0 | 660 |
| Msa0978950 | MtrunA17_Chr1g0172971 | 46.368 | 468 | 172 | 20 | 35 | 467 | 112 | 535 | 1.66e-76 | 259 |
| Msa0978950 | MtrunA17_Chr1g0192581 | 29.213 | 178 | 111 | 6 | 708 | 877 | 584 | 754 | 3.00e-14 | 77.0 |
| Msa0978950 | MtrunA17_Chr7g0271711 | 31.410 | 156 | 99 | 4 | 729 | 878 | 755 | 908 | 7.92e-14 | 75.9 |
| Msa0978950 | MtrunA17_Chr2g0294831 | 25.275 | 182 | 121 | 6 | 703 | 880 | 753 | 923 | 8.51e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0978950 | AT1G67040.2 | 30.636 | 927 | 492 | 39 | 1 | 877 | 1 | 826 | 1.74e-80 | 278 |
| Msa0978950 | AT1G67040.1 | 30.636 | 927 | 490 | 40 | 1 | 877 | 1 | 824 | 2.70e-80 | 277 |
Find 144 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAAAATGAAGATTTAT+TGG | 0.150712 | 6_4:-15172541 | None:intergenic |
| TCATCTCCCAATCAATTATT+TGG | 0.152316 | 6_4:-15175178 | None:intergenic |
| TTCTGTCACAATGCCGTTAT+TGG | 0.209571 | 6_4:-15172922 | None:intergenic |
| GATTCTTTGAAGAAGTTTAA+AGG | 0.209979 | 6_4:+15171996 | Msa0978950:CDS |
| ATGCATGAAAGCTGAGATTT+TGG | 0.225793 | 6_4:+15175097 | Msa0978950:CDS |
| TTCATTGCTGAATTGGTTCT+TGG | 0.260531 | 6_4:+15174849 | Msa0978950:CDS |
| CTTATTGTCGTTAATCTTAT+CGG | 0.264377 | 6_4:-15173660 | None:intergenic |
| TAGTTCACCTCTTAAGAAAA+AGG | 0.271508 | 6_4:+15173709 | Msa0978950:CDS |
| CTTTGATTGTAGATTGCTAA+TGG | 0.275356 | 6_4:+15172378 | Msa0978950:intron |
| ACAAATCATGTTGGATTATT+CGG | 0.275766 | 6_4:+15174432 | Msa0978950:CDS |
| GATCTTAGAACCTGGTTTGC+AGG | 0.281934 | 6_4:+15172848 | Msa0978950:CDS |
| ATCAATTCGGTAAACAAGTT+TGG | 0.298864 | 6_4:-15174751 | None:intergenic |
| TGAGGATGTGCTTCAAATTT+TGG | 0.301157 | 6_4:+15175265 | Msa0978950:CDS |
| AATTGCTGCCAAAACTATTA+TGG | 0.305730 | 6_4:+15175035 | Msa0978950:CDS |
| TGATGATGGTGAGGAGTCTT+TGG | 0.307931 | 6_4:+15172566 | Msa0978950:CDS |
| CCTTCATGTTTCAACCGTTC+AGG | 0.309083 | 6_4:-15174669 | None:intergenic |
| AATCAATCATGTTATAATTC+TGG | 0.310463 | 6_4:+15172975 | Msa0978950:CDS |
| ACCAAATGGAGTTGGGAATT+AGG | 0.310684 | 6_4:-15172032 | None:intergenic |
| GCCATTGAACATTTGATCAT+TGG | 0.322320 | 6_4:-15173948 | None:intergenic |
| TTTGATCATTGGAACATGTT+AGG | 0.323969 | 6_4:-15173937 | None:intergenic |
| TGCAAGCACATATATTCTTC+TGG | 0.326935 | 6_4:-15173240 | None:intergenic |
| TAAACACACCATAATAGTTT+TGG | 0.339049 | 6_4:-15175043 | None:intergenic |
| AGTTATCTTCATTGCTGAAT+TGG | 0.339654 | 6_4:+15174842 | Msa0978950:CDS |
| AACAGAAGCTGAAAGAATTA+AGG | 0.344196 | 6_4:+15173819 | Msa0978950:CDS |
| TTTAATCGAAACCAACTTAA+GGG | 0.362022 | 6_4:+15174975 | Msa0978950:CDS |
| TGAGGGGTCGATGATGTCTT+TGG | 0.362655 | 6_4:-15173769 | None:intergenic |
| TGAGTCACTCATTAGGAAAA+TGG | 0.363311 | 6_4:+15175198 | Msa0978950:CDS |
| GGAAGATGCAAGAAAACATT+TGG | 0.365373 | 6_4:-15172883 | None:intergenic |
| GCCTAATTCCCAACTCCATT+TGG | 0.368909 | 6_4:+15172031 | Msa0978950:CDS |
| TTTGCAAAATCTTATCAATT+CGG | 0.375314 | 6_4:-15174764 | None:intergenic |
| TCAGAACCTTGTCTGCTTGA+AGG | 0.375714 | 6_4:-15173551 | None:intergenic |
| AACTAAACCAAATAATTGAT+TGG | 0.387081 | 6_4:+15175171 | Msa0978950:CDS |
| TCATTTAACACAGGAAAGAT+AGG | 0.389980 | 6_4:+15174714 | Msa0978950:CDS |
| GAAGAGTCCGAGAATTTCTT+CGG | 0.392103 | 6_4:+15172779 | Msa0978950:CDS |
| CGCTGATGCTGAAGAGAAAT+CGG | 0.398447 | 6_4:-15173090 | None:intergenic |
| TTTGAGGCAGGTGTTGATAT+TGG | 0.398714 | 6_4:+15175242 | Msa0978950:CDS |
| TTTGATTGTAGATTGCTAAT+GGG | 0.399660 | 6_4:+15172379 | Msa0978950:intron |
| AAGCTAGGTGGTGGTTGTAT+TGG | 0.402353 | 6_4:+15171423 | Msa0978950:CDS |
| GATTTATCTCTCTTTGAAGA+TGG | 0.402536 | 6_4:-15172519 | None:intergenic |
| ATCTCAGCTTTCATGCATAA+AGG | 0.404055 | 6_4:-15175092 | None:intergenic |
| CAAATAGAAATCCCTTAAGT+TGG | 0.410234 | 6_4:-15174986 | None:intergenic |
| CTCTTTCCCGAAGAAATTCT+CGG | 0.418867 | 6_4:-15172786 | None:intergenic |
| TTGCATCTATCTGCCTTAGT+AGG | 0.422024 | 6_4:-15173509 | None:intergenic |
| CACATATATTCTTCTGGAAG+TGG | 0.436122 | 6_4:-15173234 | None:intergenic |
| TCGGATAAGGTCTCCTACTA+AGG | 0.439325 | 6_4:+15173496 | Msa0978950:CDS |
| GCCTCAGAAGCTTCGGAAAA+CGG | 0.442167 | 6_4:+15172623 | Msa0978950:CDS |
| AAGTCTTGTAGCTAGGTTGA+TGG | 0.445700 | 6_4:+15172482 | Msa0978950:CDS |
| CAAACCGCATGGAGGCTTAG+AGG | 0.445930 | 6_4:+15173280 | Msa0978950:CDS |
| GCGAAAACATCTGAAACAAT+AGG | 0.446400 | 6_4:-15173068 | None:intergenic |
| TAAGAACAATTTATAGAGCC+AGG | 0.449521 | 6_4:-15174639 | None:intergenic |
| AAGAGTCCGAGAATTTCTTC+GGG | 0.450925 | 6_4:+15172780 | Msa0978950:CDS |
| AGAAGAGCAGTGACTAGGTT+TGG | 0.456776 | 6_4:+15172657 | Msa0978950:CDS |
| TGGGAGATGAGTCACTCATT+AGG | 0.465318 | 6_4:+15175191 | Msa0978950:CDS |
| ACTAAACCAAATAATTGATT+GGG | 0.466620 | 6_4:+15175172 | Msa0978950:CDS |
| CTGTTTGTAGCCTGCAAACC+AGG | 0.470209 | 6_4:-15172858 | None:intergenic |
| TAAGTGGTCGAACTCGGATA+AGG | 0.471223 | 6_4:+15173483 | Msa0978950:CDS |
| GATTAAGAAGTGGGAATGTA+TGG | 0.471509 | 6_4:+15175139 | Msa0978950:CDS |
| TGTTCTTACCAAATGGAGTT+GGG | 0.472016 | 6_4:-15172039 | None:intergenic |
| GATGCAAATTTGATCTAGAA+AGG | 0.476115 | 6_4:+15173525 | Msa0978950:CDS |
| TTCTGGCATAGACAAGTCAT+TGG | 0.478796 | 6_4:+15172992 | Msa0978950:CDS |
| CAAGAGTGAGATTAAGAAGT+GGG | 0.481067 | 6_4:+15175130 | Msa0978950:CDS |
| GATGCTTCCAAGACTGATCC+AGG | 0.482842 | 6_4:-15174483 | None:intergenic |
| AGAGGTGAACTAAAGGTAGA+TGG | 0.486475 | 6_4:-15173698 | None:intergenic |
| AGTCAAGGCCTCAGAAGCTT+CGG | 0.491390 | 6_4:+15172616 | Msa0978950:CDS |
| TTTCTTAAGAGGTGAACTAA+AGG | 0.491409 | 6_4:-15173705 | None:intergenic |
| AGTGGAAATAAAGACTTTGT+TGG | 0.492104 | 6_4:+15173446 | Msa0978950:CDS |
| TCCAATGATCAAATGTTCAA+TGG | 0.495249 | 6_4:+15173947 | Msa0978950:CDS |
| TCTCAGTCCTGGATCAGTCT+TGG | 0.495904 | 6_4:+15174476 | Msa0978950:CDS |
| CATAAAACTCGAACACAAGA+AGG | 0.496476 | 6_4:+15173332 | Msa0978950:CDS |
| TAACGGCATTGTGACAGAAA+TGG | 0.498435 | 6_4:+15172926 | Msa0978950:CDS |
| TCAAAGTGTCCTACCAATAA+CGG | 0.502704 | 6_4:+15172909 | Msa0978950:CDS |
| GAAATTCTCGGACTCTTCAA+AGG | 0.504286 | 6_4:-15172774 | None:intergenic |
| ATGTTCTTACCAAATGGAGT+TGG | 0.504634 | 6_4:-15172040 | None:intergenic |
| ATTGGTAGGACACTTTGAAA+TGG | 0.506348 | 6_4:-15172904 | None:intergenic |
| ACCTAAAACTTCTTCTCTGA+GGG | 0.509028 | 6_4:-15173786 | None:intergenic |
| CATGAGTTATGATCTTCTCC+TGG | 0.522859 | 6_4:-15173169 | None:intergenic |
| AAGAAGAATAATCAAAAGCT+AGG | 0.529032 | 6_4:+15171408 | Msa0978950:CDS |
| TCTTCCAGTAGTCTCGATGA+AGG | 0.531049 | 6_4:+15174510 | Msa0978950:CDS |
| TCTGGCATAGACAAGTCATT+GGG | 0.533419 | 6_4:+15172993 | Msa0978950:CDS |
| TCTAATGTCAGATGTAAAAG+AGG | 0.536571 | 6_4:+15173623 | Msa0978950:CDS |
| AGTGATGATGCTAGTGTGAA+TGG | 0.540323 | 6_4:+15171360 | Msa0978950:CDS |
| AGTAGTCTCGATGAAGGCTC+AGG | 0.544009 | 6_4:+15174516 | Msa0978950:CDS |
| AAGAAGTGGGAATGTATGGC+TGG | 0.544793 | 6_4:+15175143 | Msa0978950:CDS |
| AAAGCGTAAGTGGTCGAACT+CGG | 0.549788 | 6_4:+15173477 | Msa0978950:CDS |
| TCAAGAGTGAGATTAAGAAG+TGG | 0.554941 | 6_4:+15175129 | Msa0978950:CDS |
| CATGTTTCAACCGTTCAGGT+TGG | 0.559219 | 6_4:-15174665 | None:intergenic |
| TGTTTAAGTCATGGTGTGCA+TGG | 0.560555 | 6_4:+15175060 | Msa0978950:CDS |
| ACGAGAGAAGAGCAGTGACT+AGG | 0.561080 | 6_4:+15172652 | Msa0978950:CDS |
| CATGGAGGCTTAGAGGATGA+TGG | 0.562488 | 6_4:+15173287 | Msa0978950:CDS |
| TGTAGTTCTTCTCAGAAGCC+AGG | 0.569110 | 6_4:+15173151 | Msa0978950:CDS |
| AAACAAGTTTATTAGCGTGA+TGG | 0.570139 | 6_4:-15172749 | None:intergenic |
| AGTCTTGTAGCTAGGTTGAT+GGG | 0.572119 | 6_4:+15172483 | Msa0978950:CDS |
| GTGGGAATGTATGGCTGGCA+TGG | 0.572933 | 6_4:+15175148 | Msa0978950:CDS |
| ATCAACCTAGCTACAAGACT+TGG | 0.573014 | 6_4:-15172480 | None:intergenic |
| AAGATTGACAGAAAGCAAGC+TGG | 0.574839 | 6_4:+15174806 | Msa0978950:CDS |
| TGACAGAAATGGCTGGAACT+CGG | 0.575576 | 6_4:+15172937 | Msa0978950:CDS |
| GATTGATTCTGTATATCTTG+CGG | 0.577099 | 6_4:-15172960 | None:intergenic |
| AATAATCAAAAGCTAGGTGG+TGG | 0.577202 | 6_4:+15171414 | Msa0978950:CDS |
| AATGGTAATCATCTCAGTCC+TGG | 0.577258 | 6_4:+15174465 | Msa0978950:CDS |
| GGTTTGAATCAAAGCGTAAG+TGG | 0.578058 | 6_4:+15173467 | Msa0978950:CDS |
| AAAACTCCTCTGCGTAGCAT+CGG | 0.578757 | 6_4:-15174955 | None:intergenic |
| AATTCTTGAAGAATCAATGC+AGG | 0.584695 | 6_4:-15173890 | None:intergenic |
| GGCATTGTGACAGAAATGGC+TGG | 0.587128 | 6_4:+15172930 | Msa0978950:CDS |
| AAGCACCAAGTCTTGTAGCT+AGG | 0.588985 | 6_4:+15172475 | Msa0978950:CDS |
| AGAAGAGACTAACCAGGAGG+AGG | 0.589050 | 6_4:-15171516 | None:intergenic |
| CACCTAAAACTTCTTCTCTG+AGG | 0.598854 | 6_4:-15173787 | None:intergenic |
| CGAATGCAAGGCATGAGTCA+AGG | 0.602268 | 6_4:+15172601 | Msa0978950:CDS |
| CCTGAACGGTTGAAACATGA+AGG | 0.602964 | 6_4:+15174669 | Msa0978950:CDS |
| GCTACTAAGATCTTAGAACC+TGG | 0.603700 | 6_4:+15172840 | Msa0978950:CDS |
| GTCACTAGGAACAATGAGGA+AGG | 0.607114 | 6_4:+15174876 | Msa0978950:CDS |
| TCCTGTGTTAAATGATGCTG+CGG | 0.608805 | 6_4:-15174706 | None:intergenic |
| AGATCAAAGCTACGAATGCA+AGG | 0.611185 | 6_4:+15172589 | Msa0978950:CDS |
| ATGCAAGAAATGAGAAGCTG+TGG | 0.611279 | 6_4:-15174906 | None:intergenic |
| TGGTTCTTGGAAATGTCACT+AGG | 0.612409 | 6_4:+15174862 | Msa0978950:CDS |
| ATTGCTAATGGGAACAGTGG+AGG | 0.612632 | 6_4:+15172390 | Msa0978950:CDS |
| AGGAAACCTTCAAGCAGACA+AGG | 0.614022 | 6_4:+15173545 | Msa0978950:CDS |
| ACAACTTCAAGCACTGTGAG+TGG | 0.614489 | 6_4:+15173428 | Msa0978950:CDS |
| AAGAACAATTTATAGAGCCA+GGG | 0.617947 | 6_4:-15174638 | None:intergenic |
| GTTCTTACGACCAACCTGAA+CGG | 0.622153 | 6_4:+15174655 | Msa0978950:CDS |
| GTCACAATGCCGTTATTGGT+AGG | 0.622935 | 6_4:-15172918 | None:intergenic |
| ATAAAACTCGAACACAAGAA+GGG | 0.626617 | 6_4:+15173333 | Msa0978950:CDS |
| TTATTCGGAACCTCGTGCAA+TGG | 0.628364 | 6_4:+15174447 | Msa0978950:CDS |
| TTCTGATAGTGATGATGGTG+AGG | 0.629680 | 6_4:+15172557 | Msa0978950:CDS |
| TCCGCAGCATCATTTAACAC+AGG | 0.629948 | 6_4:+15174705 | Msa0978950:CDS |
| TAGATTGCTAATGGGAACAG+TGG | 0.630457 | 6_4:+15172387 | Msa0978950:intron |
| GTCATGGTGTGCATGGACAA+AGG | 0.631811 | 6_4:+15175067 | Msa0978950:CDS |
| ATTATGGTGTGTTTAAGTCA+TGG | 0.635508 | 6_4:+15175051 | Msa0978950:CDS |
| GGCAGGTGTTGATATTGGTG+AGG | 0.636506 | 6_4:+15175247 | Msa0978950:CDS |
| AGAGTACATCTCGAAGCTCA+AGG | 0.642881 | 6_4:+15172805 | Msa0978950:CDS |
| CAGTGTGAGACAAATCATGT+TGG | 0.649961 | 6_4:+15174423 | Msa0978950:intron |
| GTTCAATGGCAAATGTCCCA+AGG | 0.650827 | 6_4:+15173961 | Msa0978950:CDS |
| AATGTCAGATGTAAAAGAGG+AGG | 0.652424 | 6_4:+15173626 | Msa0978950:CDS |
| AAGAATAATCAAAAGCTAGG+TGG | 0.660457 | 6_4:+15171411 | Msa0978950:CDS |
| CTGGCATAGACAAGTCATTG+GGG | 0.665747 | 6_4:+15172994 | Msa0978950:CDS |
| AAATGTCACTAGGAACAATG+AGG | 0.695218 | 6_4:+15174872 | Msa0978950:CDS |
| TCATCGCGCAAACCGCATGG+AGG | 0.697799 | 6_4:+15173272 | Msa0978950:CDS |
| TCAGAAGCTTCGGAAAACGG+AGG | 0.698643 | 6_4:+15172626 | Msa0978950:CDS |
| AGACAAGGTTCTGATGCACA+AGG | 0.700943 | 6_4:+15173560 | Msa0978950:CDS |
| TAACGACAATAAGATGAACA+AGG | 0.709510 | 6_4:+15173670 | Msa0978950:CDS |
| TGGCATAGACAAGTCATTGG+GGG | 0.718479 | 6_4:+15172995 | Msa0978950:CDS |
| CCTAAAACTTCTTCTCTGAG+GGG | 0.722704 | 6_4:-15173785 | None:intergenic |
| GAGATGATTACCATTGCACG+AGG | 0.725090 | 6_4:-15174457 | None:intergenic |
| TTGCAACCGATGCTACGCAG+AGG | 0.745328 | 6_4:+15174949 | Msa0978950:CDS |
| TCATCCTCTAAGCCTCCATG+CGG | 0.772619 | 6_4:-15173284 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAGAAAACAAAAGAAA+TGG | - | chr6_4:15171815-15171834 | None:intergenic | 15.0% |
| !!! | TTGACTTATTTATCATTTTT+TGG | + | chr6_4:15174082-15174101 | Msa0978950:intron | 15.0% |
| !! | GAATATAATCAATTTATTGA+TGG | - | chr6_4:15174180-15174199 | None:intergenic | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr6_4:15174208-15174227 | Msa0978950:intron | 15.0% |
| !! | ATCAGAAAATGAAGATTTAT+TGG | - | chr6_4:15172544-15172563 | None:intergenic | 20.0% |
| !! | AATCAATCATGTTATAATTC+TGG | + | chr6_4:15172975-15172994 | Msa0978950:CDS | 20.0% |
| !!! | CATTGATTATAATGAAGATA+AGG | - | chr6_4:15174058-15174077 | None:intergenic | 20.0% |
| !! | TTTGCAAAATCTTATCAATT+CGG | - | chr6_4:15174767-15174786 | None:intergenic | 20.0% |
| !! | AACTAAACCAAATAATTGAT+TGG | + | chr6_4:15175171-15175190 | Msa0978950:CDS | 20.0% |
| !! | ACTAAACCAAATAATTGATT+GGG | + | chr6_4:15175172-15175191 | Msa0978950:CDS | 20.0% |
| !!! | CTTTTGATTATTCTTCTTCT+CGG | - | chr6_4:15171406-15171425 | None:intergenic | 25.0% |
| ! | AAGAAGAATAATCAAAAGCT+AGG | + | chr6_4:15171408-15171427 | Msa0978950:CDS | 25.0% |
| ! | TATATATCACTTATGAAGCT+CGG | + | chr6_4:15171585-15171604 | Msa0978950:intron | 25.0% |
| ! | AAATGTGAAAATTTGACATG+AGG | + | chr6_4:15171897-15171916 | Msa0978950:intron | 25.0% |
| ! | AATGTGAAAATTTGACATGA+GGG | + | chr6_4:15171898-15171917 | Msa0978950:intron | 25.0% |
| !! | GATTCTTTGAAGAAGTTTAA+AGG | + | chr6_4:15171996-15172015 | Msa0978950:CDS | 25.0% |
| ! | TATCATATGTTCTTACCAAA+TGG | - | chr6_4:15172049-15172068 | None:intergenic | 25.0% |
| ! | ACAAAATCTATGTATTCACA+CGG | + | chr6_4:15172140-15172159 | Msa0978950:intron | 25.0% |
| !!! | CGGTATTTTAGAGTTTAAAA+AGG | - | chr6_4:15172225-15172244 | None:intergenic | 25.0% |
| ! | TTTGATTGTAGATTGCTAAT+GGG | + | chr6_4:15172379-15172398 | Msa0978950:intron | 25.0% |
| !! | TTTTCAAATGCGAAAAAAAG+TGG | + | chr6_4:15172414-15172433 | Msa0978950:CDS | 25.0% |
| ! | TTTCAAATGCGAAAAAAAGT+GGG | + | chr6_4:15172415-15172434 | Msa0978950:CDS | 25.0% |
| ! | CTTATTGTCGTTAATCTTAT+CGG | - | chr6_4:15173663-15173682 | None:intergenic | 25.0% |
| ! | CTACATTTACTGATAACAAT+TGG | - | chr6_4:15174022-15174041 | None:intergenic | 25.0% |
| ! | CAATTGTTATCAGTAAATGT+AGG | + | chr6_4:15174020-15174039 | Msa0978950:intron | 25.0% |
| !! | ATATCCAACATATGATTTGT+AGG | - | chr6_4:15174109-15174128 | None:intergenic | 25.0% |
| ! | ATATGTTGGATATTCGTTAT+GGG | + | chr6_4:15174116-15174135 | Msa0978950:intron | 25.0% |
| ! | ACAAATCATGTTGGATTATT+CGG | + | chr6_4:15174432-15174451 | Msa0978950:CDS | 25.0% |
| !! | TGCAAAGTTTAGATTCTTTT+TGG | + | chr6_4:15174781-15174800 | Msa0978950:CDS | 25.0% |
| !! | TTTTAATCGAAACCAACTTA+AGG | + | chr6_4:15174974-15174993 | Msa0978950:CDS | 25.0% |
| ! | TTTAATCGAAACCAACTTAA+GGG | + | chr6_4:15174975-15174994 | Msa0978950:CDS | 25.0% |
| !! | TAAACACACCATAATAGTTT+TGG | - | chr6_4:15175046-15175065 | None:intergenic | 25.0% |
| !! | TTGAAGATCTTGTAGATTTT+AGG | + | chr6_4:15175300-15175319 | Msa0978950:CDS | 25.0% |
| AAGAATAATCAAAAGCTAGG+TGG | + | chr6_4:15171411-15171430 | Msa0978950:CDS | 30.0% | |
| ! | TTTTCTCTCAGCTATTTGAT+TGG | + | chr6_4:15171448-15171467 | Msa0978950:CDS | 30.0% |
| GTAATTATATGTGTCAGTGT+CGG | + | chr6_4:15171675-15171694 | Msa0978950:intron | 30.0% | |
| ! | GAACATATGATAATTTGTGC+TGG | + | chr6_4:15172057-15172076 | Msa0978950:intron | 30.0% |
| AACGGTCTAAATTTCAAACT+CGG | - | chr6_4:15172245-15172264 | None:intergenic | 30.0% | |
| ATAAGCAACTACTCAAAAGA+AGG | - | chr6_4:15172332-15172351 | None:intergenic | 30.0% | |
| !! | TTCTTTTGAGTAGTTGCTTA+TGG | + | chr6_4:15172331-15172350 | Msa0978950:intron | 30.0% |
| CTTTGATTGTAGATTGCTAA+TGG | + | chr6_4:15172378-15172397 | Msa0978950:intron | 30.0% | |
| ! | GATTTATCTCTCTTTGAAGA+TGG | - | chr6_4:15172522-15172541 | None:intergenic | 30.0% |
| !! | TCATTTTCTGATAGTGATGA+TGG | + | chr6_4:15172552-15172571 | Msa0978950:CDS | 30.0% |
| AAACAAGTTTATTAGCGTGA+TGG | - | chr6_4:15172752-15172771 | None:intergenic | 30.0% | |
| ! | GATTGATTCTGTATATCTTG+CGG | - | chr6_4:15172963-15172982 | None:intergenic | 30.0% |
| ! | ACTACATCATTTTCATGAGA+CGG | - | chr6_4:15173137-15173156 | None:intergenic | 30.0% |
| !! | TGTTCGAGTTTTATGTTTGA+AGG | - | chr6_4:15173327-15173346 | None:intergenic | 30.0% |
| ATAAAACTCGAACACAAGAA+GGG | + | chr6_4:15173333-15173352 | Msa0978950:CDS | 30.0% | |
| AGTGGAAATAAAGACTTTGT+TGG | + | chr6_4:15173446-15173465 | Msa0978950:CDS | 30.0% | |
| GATGCAAATTTGATCTAGAA+AGG | + | chr6_4:15173525-15173544 | Msa0978950:CDS | 30.0% | |
| TCTAATGTCAGATGTAAAAG+AGG | + | chr6_4:15173623-15173642 | Msa0978950:CDS | 30.0% | |
| TAACGACAATAAGATGAACA+AGG | + | chr6_4:15173670-15173689 | Msa0978950:CDS | 30.0% | |
| TTTCTTAAGAGGTGAACTAA+AGG | - | chr6_4:15173708-15173727 | None:intergenic | 30.0% | |
| TAGTTCACCTCTTAAGAAAA+AGG | + | chr6_4:15173709-15173728 | Msa0978950:CDS | 30.0% | |
| CAAAAAGTGATCATGAGATT+AGG | + | chr6_4:15173738-15173757 | Msa0978950:CDS | 30.0% | |
| AACAGAAGCTGAAAGAATTA+AGG | + | chr6_4:15173819-15173838 | Msa0978950:CDS | 30.0% | |
| ATTAAGGTCTAGAGAAAAAG+AGG | + | chr6_4:15173835-15173854 | Msa0978950:CDS | 30.0% | |
| AATTCTTGAAGAATCAATGC+AGG | - | chr6_4:15173893-15173912 | None:intergenic | 30.0% | |
| TTTGATCATTGGAACATGTT+AGG | - | chr6_4:15173940-15173959 | None:intergenic | 30.0% | |
| TCCAATGATCAAATGTTCAA+TGG | + | chr6_4:15173947-15173966 | Msa0978950:CDS | 30.0% | |
| ATAGAAAGAGAAAATGCACA+TGG | - | chr6_4:15173994-15174013 | None:intergenic | 30.0% | |
| CATATGTTGGATATTCGTTA+TGG | + | chr6_4:15174115-15174134 | Msa0978950:intron | 30.0% | |
| TATGTTGGATATTCGTTATG+GGG | + | chr6_4:15174117-15174136 | Msa0978950:intron | 30.0% | |
| ! | TCAATTTATTGATGGCATGT+CGG | - | chr6_4:15174172-15174191 | None:intergenic | 30.0% |
| !! | TTTTATTTGAGCTTGTGCTT+TGG | + | chr6_4:15174348-15174367 | Msa0978950:intron | 30.0% |
| AAGAACAATTTATAGAGCCA+GGG | - | chr6_4:15174641-15174660 | None:intergenic | 30.0% | |
| TAAGAACAATTTATAGAGCC+AGG | - | chr6_4:15174642-15174661 | None:intergenic | 30.0% | |
| TCATTTAACACAGGAAAGAT+AGG | + | chr6_4:15174714-15174733 | Msa0978950:CDS | 30.0% | |
| ATCAATTCGGTAAACAAGTT+TGG | - | chr6_4:15174754-15174773 | None:intergenic | 30.0% | |
| AGTTATCTTCATTGCTGAAT+TGG | + | chr6_4:15174842-15174861 | Msa0978950:CDS | 30.0% | |
| CAAATAGAAATCCCTTAAGT+TGG | - | chr6_4:15174989-15175008 | None:intergenic | 30.0% | |
| AATTGCTGCCAAAACTATTA+TGG | + | chr6_4:15175035-15175054 | Msa0978950:CDS | 30.0% | |
| ATTATGGTGTGTTTAAGTCA+TGG | + | chr6_4:15175051-15175070 | Msa0978950:CDS | 30.0% | |
| TCATCTCCCAATCAATTATT+TGG | - | chr6_4:15175181-15175200 | None:intergenic | 30.0% | |
| AATAATCAAAAGCTAGGTGG+TGG | + | chr6_4:15171414-15171433 | Msa0978950:CDS | 35.0% | |
| TAGATTAGAAGAGACTAACC+AGG | - | chr6_4:15171525-15171544 | None:intergenic | 35.0% | |
| ! | GATGCTCTCTTTAGATTTTG+AGG | + | chr6_4:15171760-15171779 | Msa0978950:intron | 35.0% |
| GAGGGTCATATACAAATTTG+TGG | + | chr6_4:15171916-15171935 | Msa0978950:intron | 35.0% | |
| AAAAACCAAACACTCTCATC+AGG | - | chr6_4:15171944-15171963 | None:intergenic | 35.0% | |
| !! | TTTTTGTTGTGAACTGTGAC+AGG | + | chr6_4:15171960-15171979 | Msa0978950:intron | 35.0% |
| TGTTCTTACCAAATGGAGTT+GGG | - | chr6_4:15172042-15172061 | None:intergenic | 35.0% | |
| ATGTTCTTACCAAATGGAGT+TGG | - | chr6_4:15172043-15172062 | None:intergenic | 35.0% | |
| AGCTTTCTTATAGATTGCAG+CGG | + | chr6_4:15172115-15172134 | Msa0978950:intron | 35.0% | |
| AGTGACTATTGGATTGTGAT+CGG | + | chr6_4:15172173-15172192 | Msa0978950:intron | 35.0% | |
| !! | TTTTGAGTAGTTGCTTATGG+TGG | + | chr6_4:15172334-15172353 | Msa0978950:intron | 35.0% |
| GGAAGATGCAAGAAAACATT+TGG | - | chr6_4:15172886-15172905 | None:intergenic | 35.0% | |
| ! | ATTGGTAGGACACTTTGAAA+TGG | - | chr6_4:15172907-15172926 | None:intergenic | 35.0% |
| ! | TCAAAGTGTCCTACCAATAA+CGG | + | chr6_4:15172909-15172928 | Msa0978950:CDS | 35.0% |
| ! | GCGAAAACATCTGAAACAAT+AGG | - | chr6_4:15173071-15173090 | None:intergenic | 35.0% |
| ! | CACATATATTCTTCTGGAAG+TGG | - | chr6_4:15173237-15173256 | None:intergenic | 35.0% |
| TGCAAGCACATATATTCTTC+TGG | - | chr6_4:15173243-15173262 | None:intergenic | 35.0% | |
| CATAAAACTCGAACACAAGA+AGG | + | chr6_4:15173332-15173351 | Msa0978950:CDS | 35.0% | |
| AATGTCAGATGTAAAAGAGG+AGG | + | chr6_4:15173626-15173645 | Msa0978950:CDS | 35.0% | |
| ! | GTCTCTTCCTTTTTCTTAAG+AGG | - | chr6_4:15173719-15173738 | None:intergenic | 35.0% |
| ACCTAAAACTTCTTCTCTGA+GGG | - | chr6_4:15173789-15173808 | None:intergenic | 35.0% | |
| ! | ATCAATGCAGGTGATCTTTT+AGG | - | chr6_4:15173881-15173900 | None:intergenic | 35.0% |
| GCCATTGAACATTTGATCAT+TGG | - | chr6_4:15173951-15173970 | None:intergenic | 35.0% | |
| TGGTCCTACAAATCATATGT+TGG | + | chr6_4:15174102-15174121 | Msa0978950:intron | 35.0% | |
| ATGTTGGATATTCGTTATGG+GGG | + | chr6_4:15174118-15174137 | Msa0978950:intron | 35.0% | |
| CCATACATGCTTTCAATCTA+AGG | - | chr6_4:15174146-15174165 | None:intergenic | 35.0% | |
| ! | CCTTAGATTGAAAGCATGTA+TGG | + | chr6_4:15174143-15174162 | Msa0978950:intron | 35.0% |
| GTCAGTATTAATGTTGTGCT+TGG | + | chr6_4:15174240-15174259 | Msa0978950:intron | 35.0% | |
| GAGTATAAGCAAAAGCTCTT+CGG | - | chr6_4:15174295-15174314 | None:intergenic | 35.0% | |
| !! | GACATCATCCTTTGTTTCTA+CGG | + | chr6_4:15174396-15174415 | Msa0978950:intron | 35.0% |
| ! | TTGGTCTTCAATTGAATTCC+AGG | + | chr6_4:15174603-15174622 | Msa0978950:intron | 35.0% |
| TGGTCTTCAATTGAATTCCA+GGG | + | chr6_4:15174604-15174623 | Msa0978950:intron | 35.0% | |
| ! | TTCATTGCTGAATTGGTTCT+TGG | + | chr6_4:15174849-15174868 | Msa0978950:CDS | 35.0% |
| AAATGTCACTAGGAACAATG+AGG | + | chr6_4:15174872-15174891 | Msa0978950:CDS | 35.0% | |
| ATCTCAGCTTTCATGCATAA+AGG | - | chr6_4:15175095-15175114 | None:intergenic | 35.0% | |
| ! | ATGCATGAAAGCTGAGATTT+TGG | + | chr6_4:15175097-15175116 | Msa0978950:CDS | 35.0% |
| TCAAGAGTGAGATTAAGAAG+TGG | + | chr6_4:15175129-15175148 | Msa0978950:CDS | 35.0% | |
| CAAGAGTGAGATTAAGAAGT+GGG | + | chr6_4:15175130-15175149 | Msa0978950:CDS | 35.0% | |
| GATTAAGAAGTGGGAATGTA+TGG | + | chr6_4:15175139-15175158 | Msa0978950:CDS | 35.0% | |
| TGAGTCACTCATTAGGAAAA+TGG | + | chr6_4:15175198-15175217 | Msa0978950:CDS | 35.0% | |
| ! | TGAGGATGTGCTTCAAATTT+TGG | + | chr6_4:15175265-15175284 | Msa0978950:CDS | 35.0% |
| ! | GATCTTGTAGATTTTAGGCT+TGG | + | chr6_4:15175305-15175324 | Msa0978950:CDS | 35.0% |
| ! | AGTGATGATGCTAGTGTGAA+TGG | + | chr6_4:15171360-15171379 | Msa0978950:CDS | 40.0% |
| !!! | AGGAGGAGGAAGAAGTTTTT+TGG | - | chr6_4:15171505-15171524 | None:intergenic | 40.0% |
| AAAAAACTTCTTCCTCCTCC+TGG | + | chr6_4:15171504-15171523 | Msa0978950:CDS | 40.0% | |
| ATTAGAAGAGACTAACCAGG+AGG | - | chr6_4:15171522-15171541 | None:intergenic | 40.0% | |
| TCGGATACAGACACAAACAT+TGG | + | chr6_4:15171604-15171623 | Msa0978950:intron | 40.0% | |
| ACAGACACAAACATTGGACA+TGG | + | chr6_4:15171610-15171629 | Msa0978950:intron | 40.0% | |
| !! | ACTTGAGGTTGGTAGTGTAA+AGG | + | chr6_4:15171738-15171757 | Msa0978950:intron | 40.0% |
| ACCAAATGGAGTTGGGAATT+AGG | - | chr6_4:15172035-15172054 | None:intergenic | 40.0% | |
| ACTATTGGATTGTGATCGGA+CGG | + | chr6_4:15172177-15172196 | Msa0978950:intron | 40.0% | |
| TAGATTGCTAATGGGAACAG+TGG | + | chr6_4:15172387-15172406 | Msa0978950:intron | 40.0% | |
| ATCAACCTAGCTACAAGACT+TGG | - | chr6_4:15172483-15172502 | None:intergenic | 40.0% | |
| ! | AAGTCTTGTAGCTAGGTTGA+TGG | + | chr6_4:15172482-15172501 | Msa0978950:CDS | 40.0% |
| !! | AGTCTTGTAGCTAGGTTGAT+GGG | + | chr6_4:15172483-15172502 | Msa0978950:CDS | 40.0% |
| !! | TTCTGATAGTGATGATGGTG+AGG | + | chr6_4:15172557-15172576 | Msa0978950:CDS | 40.0% |
| AGATCAAAGCTACGAATGCA+AGG | + | chr6_4:15172589-15172608 | Msa0978950:CDS | 40.0% | |
| GAAATTCTCGGACTCTTCAA+AGG | - | chr6_4:15172777-15172796 | None:intergenic | 40.0% | |
| GAAGAGTCCGAGAATTTCTT+CGG | + | chr6_4:15172779-15172798 | Msa0978950:CDS | 40.0% | |
| AAGAGTCCGAGAATTTCTTC+GGG | + | chr6_4:15172780-15172799 | Msa0978950:CDS | 40.0% | |
| CTCTTTCCCGAAGAAATTCT+CGG | - | chr6_4:15172789-15172808 | None:intergenic | 40.0% | |
| GCTACTAAGATCTTAGAACC+TGG | + | chr6_4:15172840-15172859 | Msa0978950:CDS | 40.0% | |
| TTCTGTCACAATGCCGTTAT+TGG | - | chr6_4:15172925-15172944 | None:intergenic | 40.0% | |
| TAACGGCATTGTGACAGAAA+TGG | + | chr6_4:15172926-15172945 | Msa0978950:CDS | 40.0% | |
| TTCTGGCATAGACAAGTCAT+TGG | + | chr6_4:15172992-15173011 | Msa0978950:CDS | 40.0% | |
| TCTGGCATAGACAAGTCATT+GGG | + | chr6_4:15172993-15173012 | Msa0978950:CDS | 40.0% | |
| GAGCATACGTGCAAAAATTG+CGG | + | chr6_4:15173017-15173036 | Msa0978950:CDS | 40.0% | |
| CATGAGTTATGATCTTCTCC+TGG | - | chr6_4:15173172-15173191 | None:intergenic | 40.0% | |
| GGTTTGAATCAAAGCGTAAG+TGG | + | chr6_4:15173467-15173486 | Msa0978950:CDS | 40.0% | |
| TTGCATCTATCTGCCTTAGT+AGG | - | chr6_4:15173512-15173531 | None:intergenic | 40.0% | |
| CTGATGCACAAGGAGAAAAA+AGG | + | chr6_4:15173570-15173589 | Msa0978950:CDS | 40.0% | |
| AGAGGTGAACTAAAGGTAGA+TGG | - | chr6_4:15173701-15173720 | None:intergenic | 40.0% | |
| CCTAAAACTTCTTCTCTGAG+GGG | - | chr6_4:15173788-15173807 | None:intergenic | 40.0% | |
| CACCTAAAACTTCTTCTCTG+AGG | - | chr6_4:15173790-15173809 | None:intergenic | 40.0% | |
| GTCTAGAGAAAAAGAGGAGT+TGG | + | chr6_4:15173841-15173860 | Msa0978950:CDS | 40.0% | |
| ! | GAAAAAGAGGAGTTGGTTAC+TGG | + | chr6_4:15173848-15173867 | Msa0978950:CDS | 40.0% |
| ATTTGAGCTTGTGCTTTGGT+TGG | + | chr6_4:15174352-15174371 | Msa0978950:intron | 40.0% | |
| ACTGGTATCCGTAGAAACAA+AGG | - | chr6_4:15174407-15174426 | None:intergenic | 40.0% | |
| ! | CAACATGATTTGTCTCACAC+TGG | - | chr6_4:15174425-15174444 | None:intergenic | 40.0% |
| CAGTGTGAGACAAATCATGT+TGG | + | chr6_4:15174423-15174442 | Msa0978950:intron | 40.0% | |
| AATGGTAATCATCTCAGTCC+TGG | + | chr6_4:15174465-15174484 | Msa0978950:CDS | 40.0% | |
| TCCTCTCGCTTTAATGTCTT+TGG | + | chr6_4:15174584-15174603 | Msa0978950:intron | 40.0% | |
| ACCAAAGACATTAAAGCGAG+AGG | - | chr6_4:15174588-15174607 | None:intergenic | 40.0% | |
| TCCTGTGTTAAATGATGCTG+CGG | - | chr6_4:15174709-15174728 | None:intergenic | 40.0% | |
| AAGATTGACAGAAAGCAAGC+TGG | + | chr6_4:15174806-15174825 | Msa0978950:CDS | 40.0% | |
| TGGTTCTTGGAAATGTCACT+AGG | + | chr6_4:15174862-15174881 | Msa0978950:CDS | 40.0% | |
| ATGCAAGAAATGAGAAGCTG+TGG | - | chr6_4:15174909-15174928 | None:intergenic | 40.0% | |
| TGTTTAAGTCATGGTGTGCA+TGG | + | chr6_4:15175060-15175079 | Msa0978950:CDS | 40.0% | |
| !!! | AGCTGAGATTTTGGTTCAAG+AGG | + | chr6_4:15175106-15175125 | Msa0978950:CDS | 40.0% |
| ! | TTTCGACGTTGAAGCTTTTG+AGG | + | chr6_4:15175226-15175245 | Msa0978950:CDS | 40.0% |
| !! | TTTGAGGCAGGTGTTGATAT+TGG | + | chr6_4:15175242-15175261 | Msa0978950:CDS | 40.0% |
| ! | AAGCTAGGTGGTGGTTGTAT+TGG | + | chr6_4:15171423-15171442 | Msa0978950:CDS | 45.0% |
| TTCGTAGTATCACGCACTTG+AGG | + | chr6_4:15171723-15171742 | Msa0978950:intron | 45.0% | |
| TAGTATCACGCACTTGAGGT+TGG | + | chr6_4:15171727-15171746 | Msa0978950:intron | 45.0% | |
| !! | TGGAACCTGATGAGAGTGTT+TGG | + | chr6_4:15171936-15171955 | Msa0978950:intron | 45.0% |
| GCCTAATTCCCAACTCCATT+TGG | + | chr6_4:15172031-15172050 | Msa0978950:CDS | 45.0% | |
| GTCAACACGTCAGTGACTAT+TGG | + | chr6_4:15172162-15172181 | Msa0978950:intron | 45.0% | |
| AGCCATAGGTCAAGTTCGAA+CGG | - | chr6_4:15172263-15172282 | None:intergenic | 45.0% | |
| GTCAACACATCAGAAGCCAT+AGG | - | chr6_4:15172277-15172296 | None:intergenic | 45.0% | |
| ATTGCTAATGGGAACAGTGG+AGG | + | chr6_4:15172390-15172409 | Msa0978950:CDS | 45.0% | |
| ! | AAGCACCAAGTCTTGTAGCT+AGG | + | chr6_4:15172475-15172494 | Msa0978950:CDS | 45.0% |
| !! | TGATGATGGTGAGGAGTCTT+TGG | + | chr6_4:15172566-15172585 | Msa0978950:CDS | 45.0% |
| AGAAGAGCAGTGACTAGGTT+TGG | + | chr6_4:15172657-15172676 | Msa0978950:CDS | 45.0% | |
| AGAGTACATCTCGAAGCTCA+AGG | + | chr6_4:15172805-15172824 | Msa0978950:CDS | 45.0% | |
| ! | GATCTTAGAACCTGGTTTGC+AGG | + | chr6_4:15172848-15172867 | Msa0978950:CDS | 45.0% |
| GTCACAATGCCGTTATTGGT+AGG | - | chr6_4:15172921-15172940 | None:intergenic | 45.0% | |
| TGACAGAAATGGCTGGAACT+CGG | + | chr6_4:15172937-15172956 | Msa0978950:CDS | 45.0% | |
| CTGGCATAGACAAGTCATTG+GGG | + | chr6_4:15172994-15173013 | Msa0978950:CDS | 45.0% | |
| TGGCATAGACAAGTCATTGG+GGG | + | chr6_4:15172995-15173014 | Msa0978950:CDS | 45.0% | |
| CGCTGATGCTGAAGAGAAAT+CGG | - | chr6_4:15173093-15173112 | None:intergenic | 45.0% | |
| TGTAGTTCTTCTCAGAAGCC+AGG | + | chr6_4:15173151-15173170 | Msa0978950:CDS | 45.0% | |
| ! | ACAACTTCAAGCACTGTGAG+TGG | + | chr6_4:15173428-15173447 | Msa0978950:CDS | 45.0% |
| AAAGCGTAAGTGGTCGAACT+CGG | + | chr6_4:15173477-15173496 | Msa0978950:CDS | 45.0% | |
| TAAGTGGTCGAACTCGGATA+AGG | + | chr6_4:15173483-15173502 | Msa0978950:CDS | 45.0% | |
| TCGGATAAGGTCTCCTACTA+AGG | + | chr6_4:15173496-15173515 | Msa0978950:CDS | 45.0% | |
| AGGAAACCTTCAAGCAGACA+AGG | + | chr6_4:15173545-15173564 | Msa0978950:CDS | 45.0% | |
| TCAGAACCTTGTCTGCTTGA+AGG | - | chr6_4:15173554-15173573 | None:intergenic | 45.0% | |
| ! | AGACAAGGTTCTGATGCACA+AGG | + | chr6_4:15173560-15173579 | Msa0978950:CDS | 45.0% |
| ! | CCCCTCAGAGAAGAAGTTTT+AGG | + | chr6_4:15173785-15173804 | Msa0978950:CDS | 45.0% |
| GTTCAATGGCAAATGTCCCA+AGG | + | chr6_4:15173961-15173980 | Msa0978950:CDS | 45.0% | |
| AATGGCAAATGTCCCAAGGT+TGG | + | chr6_4:15173965-15173984 | Msa0978950:intron | 45.0% | |
| TGCACATGGAAACCAACCTT+GGG | - | chr6_4:15173980-15173999 | None:intergenic | 45.0% | |
| ATGCACATGGAAACCAACCT+TGG | - | chr6_4:15173981-15174000 | None:intergenic | 45.0% | |
| TAAGCTACGAACCACCAACA+CGG | - | chr6_4:15174269-15174288 | None:intergenic | 45.0% | |
| TTATTCGGAACCTCGTGCAA+TGG | + | chr6_4:15174447-15174466 | Msa0978950:CDS | 45.0% | |
| GAGATGATTACCATTGCACG+AGG | - | chr6_4:15174460-15174479 | None:intergenic | 45.0% | |
| TCTTCCAGTAGTCTCGATGA+AGG | + | chr6_4:15174510-15174529 | Msa0978950:CDS | 45.0% | |
| GTTCTTACGACCAACCTGAA+CGG | + | chr6_4:15174655-15174674 | Msa0978950:CDS | 45.0% | |
| CATGTTTCAACCGTTCAGGT+TGG | - | chr6_4:15174668-15174687 | None:intergenic | 45.0% | |
| CCTTCATGTTTCAACCGTTC+AGG | - | chr6_4:15174672-15174691 | None:intergenic | 45.0% | |
| CCTGAACGGTTGAAACATGA+AGG | + | chr6_4:15174669-15174688 | Msa0978950:CDS | 45.0% | |
| TCCGCAGCATCATTTAACAC+AGG | + | chr6_4:15174705-15174724 | Msa0978950:CDS | 45.0% | |
| GTCACTAGGAACAATGAGGA+AGG | + | chr6_4:15174876-15174895 | Msa0978950:CDS | 45.0% | |
| AAAACTCCTCTGCGTAGCAT+CGG | - | chr6_4:15174958-15174977 | None:intergenic | 45.0% | |
| AAGAAGTGGGAATGTATGGC+TGG | + | chr6_4:15175143-15175162 | Msa0978950:CDS | 45.0% | |
| TGGGAGATGAGTCACTCATT+AGG | + | chr6_4:15175191-15175210 | Msa0978950:CDS | 45.0% | |
| AGAAGAGACTAACCAGGAGG+AGG | - | chr6_4:15171519-15171538 | None:intergenic | 50.0% | |
| ! | CAGTGTCGGACATGTGTTCA+AGG | + | chr6_4:15171689-15171708 | Msa0978950:intron | 50.0% |
| GACCGTTCGAACTTGACCTA+TGG | + | chr6_4:15172258-15172277 | Msa0978950:intron | 50.0% | |
| CGAATGCAAGGCATGAGTCA+AGG | + | chr6_4:15172601-15172620 | Msa0978950:CDS | 50.0% | |
| AGTCAAGGCCTCAGAAGCTT+CGG | + | chr6_4:15172616-15172635 | Msa0978950:CDS | 50.0% | |
| GCCTCAGAAGCTTCGGAAAA+CGG | + | chr6_4:15172623-15172642 | Msa0978950:CDS | 50.0% | |
| ! | TCCGTTTTCCGAAGCTTCTG+AGG | - | chr6_4:15172627-15172646 | None:intergenic | 50.0% |
| TCAGAAGCTTCGGAAAACGG+AGG | + | chr6_4:15172626-15172645 | Msa0978950:CDS | 50.0% | |
| ACGAGAGAAGAGCAGTGACT+AGG | + | chr6_4:15172652-15172671 | Msa0978950:CDS | 50.0% | |
| CTGTTTGTAGCCTGCAAACC+AGG | - | chr6_4:15172861-15172880 | None:intergenic | 50.0% | |
| GGCATTGTGACAGAAATGGC+TGG | + | chr6_4:15172930-15172949 | Msa0978950:CDS | 50.0% | |
| TCATCCTCTAAGCCTCCATG+CGG | - | chr6_4:15173287-15173306 | None:intergenic | 50.0% | |
| CATGGAGGCTTAGAGGATGA+TGG | + | chr6_4:15173287-15173306 | Msa0978950:CDS | 50.0% | |
| TGAGGGGTCGATGATGTCTT+TGG | - | chr6_4:15173772-15173791 | None:intergenic | 50.0% | |
| TCTCAGTCCTGGATCAGTCT+TGG | + | chr6_4:15174476-15174495 | Msa0978950:CDS | 50.0% | |
| GATGCTTCCAAGACTGATCC+AGG | - | chr6_4:15174486-15174505 | None:intergenic | 50.0% | |
| TGAGCCTTCATCGAGACTAC+TGG | - | chr6_4:15174517-15174536 | None:intergenic | 50.0% | |
| AGTAGTCTCGATGAAGGCTC+AGG | + | chr6_4:15174516-15174535 | Msa0978950:CDS | 50.0% | |
| GTCATGGTGTGCATGGACAA+AGG | + | chr6_4:15175067-15175086 | Msa0978950:CDS | 50.0% | |
| !!! | GACGTTGAAGCTTTTGAGGC+AGG | + | chr6_4:15175230-15175249 | Msa0978950:CDS | 50.0% |
| !! | GGCAGGTGTTGATATTGGTG+AGG | + | chr6_4:15175247-15175266 | Msa0978950:CDS | 50.0% |
| GATTCATCGCGCAAACCGCA+TGG | + | chr6_4:15173269-15173288 | Msa0978950:CDS | 55.0% | |
| CAAACCGCATGGAGGCTTAG+AGG | + | chr6_4:15173280-15173299 | Msa0978950:CDS | 55.0% | |
| !! | GTTGTGCTTGGTGTCCGTGT+TGG | + | chr6_4:15174252-15174271 | Msa0978950:intron | 55.0% |
| CCAGGGTGAAAACAATGCCC+TGG | - | chr6_4:15174624-15174643 | None:intergenic | 55.0% | |
| !!! | CCAGGGCATTGTTTTCACCC+TGG | + | chr6_4:15174621-15174640 | Msa0978950:intron | 55.0% |
| TTGCAACCGATGCTACGCAG+AGG | + | chr6_4:15174949-15174968 | Msa0978950:CDS | 55.0% | |
| GTGGGAATGTATGGCTGGCA+TGG | + | chr6_4:15175148-15175167 | Msa0978950:CDS | 55.0% | |
| TCATCGCGCAAACCGCATGG+AGG | + | chr6_4:15173272-15173291 | Msa0978950:CDS | 60.0% | |
| !! | GTGCTTGGTGTCCGTGTTGG+TGG | + | chr6_4:15174255-15174274 | Msa0978950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 15171357 | 15175337 | 15171357 | ID=Msa0978950;Name=Msa0978950 |
| chr6_4 | mRNA | 15171357 | 15175337 | 15171357 | ID=Msa0978950-mRNA-1;Parent=Msa0978950;Name=Msa0978950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.2|1|1|1|5|0|885 |
| chr6_4 | exon | 15171357 | 15171525 | 15171357 | ID=Msa0978950-mRNA-1:exon:4935;Parent=Msa0978950-mRNA-1 |
| chr6_4 | exon | 15171982 | 15172052 | 15171982 | ID=Msa0978950-mRNA-1:exon:4936;Parent=Msa0978950-mRNA-1 |
| chr6_4 | exon | 15172390 | 15173982 | 15172390 | ID=Msa0978950-mRNA-1:exon:4937;Parent=Msa0978950-mRNA-1 |
| chr6_4 | exon | 15174426 | 15174537 | 15174426 | ID=Msa0978950-mRNA-1:exon:4938;Parent=Msa0978950-mRNA-1 |
| chr6_4 | exon | 15174625 | 15175337 | 15174625 | ID=Msa0978950-mRNA-1:exon:4939;Parent=Msa0978950-mRNA-1 |
| chr6_4 | CDS | 15171357 | 15171525 | 15171357 | ID=Msa0978950-mRNA-1:cds;Parent=Msa0978950-mRNA-1 |
| chr6_4 | CDS | 15171982 | 15172052 | 15171982 | ID=Msa0978950-mRNA-1:cds;Parent=Msa0978950-mRNA-1 |
| chr6_4 | CDS | 15172390 | 15173982 | 15172390 | ID=Msa0978950-mRNA-1:cds;Parent=Msa0978950-mRNA-1 |
| chr6_4 | CDS | 15174426 | 15174537 | 15174426 | ID=Msa0978950-mRNA-1:cds;Parent=Msa0978950-mRNA-1 |
| chr6_4 | CDS | 15174625 | 15175337 | 15174625 | ID=Msa0978950-mRNA-1:cds;Parent=Msa0978950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
