Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876560 | XP_013451319.1 | 93.446 | 885 | 54 | 1 | 1 | 881 | 1 | 885 | 0.0 | 1579 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876560 | A0A072U6K8 | 93.446 | 885 | 54 | 1 | 1 | 881 | 1 | 885 | 0.0 | 1579 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0876560 | 0.834143 | 3.554010e-56 | -8.615850e-47 |
| Msa0001940 | Msa0876560 | 0.814608 | 1.412604e-51 | -8.615850e-47 |
| Msa0005890 | Msa0876560 | 0.800780 | 1.227680e-48 | -8.615850e-47 |
| Msa0017510 | Msa0876560 | 0.812213 | 4.747550e-51 | -8.615850e-47 |
| Msa0017950 | Msa0876560 | 0.804663 | 1.939275e-49 | -8.615850e-47 |
| Msa0024550 | Msa0876560 | 0.813139 | 2.978001e-51 | -8.615850e-47 |
| Msa0076250 | Msa0876560 | 0.832803 | 7.673694e-56 | -8.615850e-47 |
| Msa0089630 | Msa0876560 | 0.818690 | 1.718853e-52 | -8.615850e-47 |
| Msa0112570 | Msa0876560 | 0.800126 | 1.668160e-48 | -8.615850e-47 |
| Msa0120400 | Msa0876560 | 0.806664 | 7.369356e-50 | -8.615850e-47 |
| Msa0639430 | Msa0876560 | 0.804564 | 2.033444e-49 | -8.615850e-47 |
| Msa0641360 | Msa0876560 | 0.802968 | 4.361987e-49 | -8.615850e-47 |
| Msa0662240 | Msa0876560 | 0.807248 | 5.545063e-50 | -8.615850e-47 |
| Msa0677410 | Msa0876560 | 0.810675 | 1.024692e-50 | -8.615850e-47 |
| Msa0682330 | Msa0876560 | 0.807064 | 6.065657e-50 | -8.615850e-47 |
| Msa0739730 | Msa0876560 | 0.824430 | 8.105683e-54 | -8.615850e-47 |
| Msa0769180 | Msa0876560 | 0.806159 | 9.420144e-50 | -8.615850e-47 |
| Msa0786500 | Msa0876560 | 0.802827 | 4.662676e-49 | -8.615850e-47 |
| Msa0789830 | Msa0876560 | 0.824782 | 6.699139e-54 | -8.615850e-47 |
| Msa0822870 | Msa0876560 | 0.821792 | 3.344851e-53 | -8.615850e-47 |
| Msa0124280 | Msa0876560 | 0.821667 | 3.573557e-53 | -8.615850e-47 |
| Msa0131900 | Msa0876560 | 0.810171 | 1.316203e-50 | -8.615850e-47 |
| Msa0157290 | Msa0876560 | 0.811869 | 5.642860e-51 | -8.615850e-47 |
| Msa0169860 | Msa0876560 | 0.801885 | 7.289535e-49 | -8.615850e-47 |
| Msa0200260 | Msa0876560 | 0.817127 | 3.873915e-52 | -8.615850e-47 |
| Msa0221290 | Msa0876560 | 0.823654 | 1.232997e-53 | -8.615850e-47 |
| Msa0225860 | Msa0876560 | 0.802689 | 4.980871e-49 | -8.615850e-47 |
| Msa0230740 | Msa0876560 | 0.809135 | 2.197597e-50 | -8.615850e-47 |
| Msa0376350 | Msa0876560 | 0.804498 | 2.098772e-49 | -8.615850e-47 |
| Msa0392420 | Msa0876560 | 0.831251 | 1.855763e-55 | -8.615850e-47 |
| Msa0392460 | Msa0876560 | 0.823313 | 1.481535e-53 | -8.615850e-47 |
| Msa0392490 | Msa0876560 | 0.817199 | 3.732951e-52 | -8.615850e-47 |
| Msa0395790 | Msa0876560 | 0.801507 | 8.716251e-49 | -8.615850e-47 |
| Msa0415320 | Msa0876560 | 0.820787 | 5.702168e-53 | -8.615850e-47 |
| Msa0424790 | Msa0876560 | 0.803385 | 3.575257e-49 | -8.615850e-47 |
| Msa0479170 | Msa0876560 | 0.800661 | 1.297965e-48 | -8.615850e-47 |
| Msa0239030 | Msa0876560 | 0.810391 | 1.180143e-50 | -8.615850e-47 |
| Msa0243100 | Msa0876560 | 0.823784 | 1.149691e-53 | -8.615850e-47 |
| Msa0261340 | Msa0876560 | 0.833325 | 5.688803e-56 | -8.615850e-47 |
| Msa0276740 | Msa0876560 | 0.803256 | 3.802066e-49 | -8.615850e-47 |
| Msa0289920 | Msa0876560 | 0.801036 | 1.088389e-48 | -8.615850e-47 |
| Msa0316680 | Msa0876560 | 0.808850 | 2.528624e-50 | -8.615850e-47 |
| Msa0344570 | Msa0876560 | 0.809601 | 1.745670e-50 | -8.615850e-47 |
| Msa0487570 | Msa0876560 | 0.831106 | 2.013967e-55 | -8.615850e-47 |
| Msa0487630 | Msa0876560 | 0.824816 | 6.575400e-54 | -8.615850e-47 |
| Msa0516170 | Msa0876560 | 0.803636 | 3.171610e-49 | -8.615850e-47 |
| Msa0523000 | Msa0876560 | 0.803136 | 4.024907e-49 | -8.615850e-47 |
| Msa0527790 | Msa0876560 | 0.801355 | 9.364321e-49 | -8.615850e-47 |
| Msa0534930 | Msa0876560 | 0.812390 | 4.344149e-51 | -8.615850e-47 |
| Msa0535040 | Msa0876560 | 0.821689 | 3.532720e-53 | -8.615850e-47 |
| Msa0581470 | Msa0876560 | 0.807483 | 4.944965e-50 | -8.615850e-47 |
| Msa0591790 | Msa0876560 | 0.829078 | 6.295821e-55 | -8.615850e-47 |
| Msa0597790 | Msa0876560 | 0.813038 | 3.132854e-51 | -8.615850e-47 |
| Msa0861600 | Msa0876560 | 0.801724 | 7.866010e-49 | -8.615850e-47 |
| Msa0873730 | Msa0876560 | 0.807062 | 6.071351e-50 | -8.615850e-47 |
| Msa0876550 | Msa0876560 | 0.891248 | 4.722852e-74 | -8.615850e-47 |
| Msa0876560 | Msa0880140 | 0.807620 | 4.625483e-50 | -8.615850e-47 |
| Msa0876560 | Msa0890320 | 0.805656 | 1.201518e-49 | -8.615850e-47 |
| Msa0876560 | Msa0911540 | 0.816887 | 4.387064e-52 | -8.615850e-47 |
| Msa0876560 | Msa0941820 | 0.884919 | 1.269936e-71 | -8.615850e-47 |
| Msa0876560 | Msa0964840 | 0.846790 | 1.740354e-59 | -8.615850e-47 |
| Msa0876560 | Msa0965310 | 0.809689 | 1.671080e-50 | -8.615850e-47 |
| Msa0876560 | Msa0967380 | 0.803979 | 2.691753e-49 | -8.615850e-47 |
| Msa0876560 | Msa0978950 | 0.814429 | 1.547363e-51 | -8.615850e-47 |
| Msa0876560 | Msa0999700 | 0.808598 | 2.863497e-50 | -8.615850e-47 |
| Msa0876560 | Msa1004840 | 0.827864 | 1.235927e-54 | -8.615850e-47 |
| Msa0876560 | Msa1047080 | 0.801434 | 9.020508e-49 | -8.615850e-47 |
| Msa0876560 | Msa1103990 | 0.811345 | 7.334970e-51 | -8.615850e-47 |
| Msa0876560 | Msa1186020 | 0.803169 | 3.962980e-49 | -8.615850e-47 |
| Msa0876560 | Msa1228190 | 0.838092 | 3.531497e-57 | -8.615850e-47 |
| Msa0876560 | Msa1228200 | 0.827290 | 1.697355e-54 | -8.615850e-47 |
| Msa0876560 | Msa1251930 | 0.812484 | 4.142972e-51 | -8.615850e-47 |
| Msa0876560 | Msa1271260 | 0.802269 | 6.079593e-49 | -8.615850e-47 |
| Msa0876560 | Msa1297230 | 0.810861 | 9.336838e-51 | -8.615850e-47 |
| Msa0876560 | Msa1343430 | 0.815141 | 1.076256e-51 | -8.615850e-47 |
| Msa0876560 | Msa1346280 | 0.823404 | 1.410334e-53 | -8.615850e-47 |
| Msa0876560 | Msa1374550 | 0.829182 | 5.939249e-55 | -8.615850e-47 |
| Msa0876560 | Msa1425880 | 0.800526 | 1.382838e-48 | -8.615850e-47 |
| Msa0876560 | Msa1438250 | 0.836569 | 8.667915e-57 | -8.615850e-47 |
| Msa0876560 | Msa1466920 | 0.824219 | 9.085608e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876560 | MtrunA17_Chr6g0457761 | 93.446 | 885 | 54 | 1 | 1 | 881 | 1 | 885 | 0.0 | 1579 |
| Msa0876560 | MtrunA17_Chr7g0250831 | 48.770 | 976 | 363 | 33 | 1 | 877 | 1 | 938 | 0.0 | 655 |
| Msa0876560 | MtrunA17_Chr1g0172971 | 45.890 | 438 | 164 | 18 | 65 | 467 | 136 | 535 | 5.49e-76 | 258 |
| Msa0876560 | MtrunA17_Chr1g0192581 | 30.682 | 176 | 111 | 5 | 704 | 873 | 584 | 754 | 1.07e-14 | 78.6 |
| Msa0876560 | MtrunA17_Chr7g0271711 | 25.207 | 484 | 269 | 20 | 461 | 874 | 448 | 908 | 9.57e-14 | 75.5 |
| Msa0876560 | MtrunA17_Chr2g0294831 | 23.204 | 181 | 126 | 4 | 699 | 876 | 753 | 923 | 2.27e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0876560 | AT1G67040.2 | 29.904 | 933 | 487 | 41 | 1 | 873 | 1 | 826 | 7.35e-79 | 273 |
| Msa0876560 | AT1G67040.1 | 30.065 | 928 | 490 | 39 | 1 | 873 | 1 | 824 | 1.32e-78 | 272 |
Find 155 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTCCCAATCAATTATT+TGG | 0.152316 | 6_1:-14813922 | None:intergenic |
| ATCAGAAAATGAAGATTTCT+TGG | 0.196487 | 6_1:-14811255 | None:intergenic |
| TTCTGTCACAATGCCGTTAT+TGG | 0.209571 | 6_1:-14811636 | None:intergenic |
| GATTCTTTGAAGAAGTTTAA+AGG | 0.209979 | 6_1:+14810733 | Msa0876560:CDS |
| ATGCAAGAAAGCTGAGATTT+TGG | 0.225793 | 6_1:+14813841 | Msa0876560:CDS |
| TTCATTGCTGAATTGGTTCT+TGG | 0.260531 | 6_1:+14813593 | Msa0876560:CDS |
| AATTGCTGCCACAATTATTA+TGG | 0.262329 | 6_1:+14813779 | Msa0876560:CDS |
| CTTATTGTCGTTAATCTTAT+CGG | 0.264377 | 6_1:-14812374 | None:intergenic |
| TAGTTCACCTCTAAAGAAAA+AGG | 0.274374 | 6_1:+14812423 | Msa0876560:CDS |
| ACAAATCCTGTTGGATTATT+CGG | 0.291444 | 6_1:+14813188 | Msa0876560:CDS |
| ATCAATTCGGTAAACAAGTT+TGG | 0.298864 | 6_1:-14813495 | None:intergenic |
| TGAGGATGTGCTTCAAATTT+TGG | 0.301157 | 6_1:+14814009 | Msa0876560:CDS |
| TGATGATGGTGAGGAGTCTT+TGG | 0.307931 | 6_1:+14811280 | Msa0876560:CDS |
| CCTTCATGTTTCAACCGTTC+AGG | 0.309083 | 6_1:-14813413 | None:intergenic |
| AATCAATCATGTTATAATTC+TGG | 0.310463 | 6_1:+14811689 | Msa0876560:CDS |
| ACCAAATGGAGTTGGGAATT+AGG | 0.310684 | 6_1:-14810769 | None:intergenic |
| GCCATTGAACATTTGATCAT+TGG | 0.322320 | 6_1:-14812662 | None:intergenic |
| TTTGATCATTGGAACATGTT+AGG | 0.323969 | 6_1:-14812651 | None:intergenic |
| TGCAAGCACATATATTCTTC+TGG | 0.326935 | 6_1:-14811954 | None:intergenic |
| AGTTATCTTCATTGCTGAAT+TGG | 0.339654 | 6_1:+14813586 | Msa0876560:CDS |
| ATCTCAGCTTTCTTGCATAA+AGG | 0.342572 | 6_1:-14813836 | None:intergenic |
| AACAGAAGCTGAAAGAATTA+AGG | 0.344196 | 6_1:+14812533 | Msa0876560:CDS |
| CAGCTATTTGATTGGAATAG+TGG | 0.352493 | 6_1:+14810190 | Msa0876560:CDS |
| CATTTGACATTAGAATTGTT+TGG | 0.355599 | 6_1:-14812328 | None:intergenic |
| TTTCAATCGAAGCCAACTTA+AGG | 0.361553 | 6_1:+14813718 | Msa0876560:CDS |
| TCAGGGGTCGATGATGTCTT+TGG | 0.362655 | 6_1:-14812483 | None:intergenic |
| GGAAGATGCAAGAAAACATT+TGG | 0.365373 | 6_1:-14811597 | None:intergenic |
| TGAGTCACTCATTAGGAAAA+TGG | 0.365793 | 6_1:+14813942 | Msa0876560:CDS |
| GCCTAATTCCCAACTCCATT+TGG | 0.368909 | 6_1:+14810768 | Msa0876560:CDS |
| TTCAATCGAAGCCAACTTAA+GGG | 0.371336 | 6_1:+14813719 | Msa0876560:CDS |
| GAAAATGCGGAGTTGGTTAC+TGG | 0.371411 | 6_1:+14812562 | Msa0876560:CDS |
| TCAGAACCTTGTCTGCTTGA+AGG | 0.375714 | 6_1:-14812265 | None:intergenic |
| TTTGCAATATCTTATCAATT+CGG | 0.382071 | 6_1:-14813508 | None:intergenic |
| TTTGATTGTAGATTGCTAAT+GGG | 0.385241 | 6_1:+14811093 | Msa0876560:intron |
| AACTAAACCAAATAATTGAT+TGG | 0.387081 | 6_1:+14813915 | Msa0876560:CDS |
| TCATTTAACACAGGAAAGAT+AGG | 0.389980 | 6_1:+14813458 | Msa0876560:CDS |
| GAAGAGTCCGAGAATTTCTT+CGG | 0.392103 | 6_1:+14811493 | Msa0876560:CDS |
| CGCTGATGCTGAAGAGAAAT+CGG | 0.398447 | 6_1:-14811804 | None:intergenic |
| TTTGAGGCAGGTGTTGATAT+TGG | 0.398714 | 6_1:+14813986 | Msa0876560:CDS |
| AAGCTAGGTGGTGGTTGTAT+TGG | 0.402353 | 6_1:+14810157 | Msa0876560:CDS |
| GATTTATCTCTCTTTGAAGA+TGG | 0.402536 | 6_1:-14811233 | None:intergenic |
| TCAGGTTGGTTTATAGAGCC+AGG | 0.416703 | 6_1:-14813395 | None:intergenic |
| CACCTAAAACATCTTCTCTC+AGG | 0.418783 | 6_1:-14812501 | None:intergenic |
| CTCTTTCCCGAAGAAATTCT+CGG | 0.418867 | 6_1:-14811500 | None:intergenic |
| TTGCATCTATCTGCCTTAGT+AGG | 0.422024 | 6_1:-14812223 | None:intergenic |
| CGAATAGAAATCCCTTAAGT+TGG | 0.429969 | 6_1:-14813730 | None:intergenic |
| AAAAGCTTCAATGTCGAAAT+CGG | 0.432817 | 6_1:-14813966 | None:intergenic |
| CACATATATTCTTCTGGAAG+TGG | 0.436122 | 6_1:-14811948 | None:intergenic |
| TCGGATAAGGTCTCCTACTA+AGG | 0.439325 | 6_1:+14812210 | Msa0876560:CDS |
| GCCTCAGAAGCTTCGGAAAA+CGG | 0.442167 | 6_1:+14811337 | Msa0876560:CDS |
| AAGTCTTGTAGCTAGGTTGA+TGG | 0.445700 | 6_1:+14811196 | Msa0876560:CDS |
| CAAACCGCATGGAGGCTTAG+AGG | 0.445930 | 6_1:+14811994 | Msa0876560:CDS |
| GCGAAAACATCTGAAACAAT+AGG | 0.446400 | 6_1:-14811782 | None:intergenic |
| AAGAGTCCGAGAATTTCTTC+GGG | 0.450925 | 6_1:+14811494 | Msa0876560:CDS |
| AAACGGAGGCGAACGAGAGA+AGG | 0.462371 | 6_1:+14811354 | Msa0876560:CDS |
| TAGATTGCTAATGGGAATAG+TGG | 0.462857 | 6_1:+14811101 | Msa0876560:intron |
| TGGGAGATGAGTCACTCATT+AGG | 0.465318 | 6_1:+14813935 | Msa0876560:CDS |
| ACTAAACCAAATAATTGATT+GGG | 0.466620 | 6_1:+14813916 | Msa0876560:CDS |
| ATCAAGACTACTGGAAGAAA+AGG | 0.470198 | 6_1:-14813261 | None:intergenic |
| CTGTTTGTAGCCTGCAAACC+AGG | 0.470209 | 6_1:-14811572 | None:intergenic |
| TGTTCTTACCAAATGGAGTT+GGG | 0.472016 | 6_1:-14810776 | None:intergenic |
| AGAAGGGCAGTGACTAGGTT+TGG | 0.476035 | 6_1:+14811371 | Msa0876560:CDS |
| GATGCAAATTTGATCTAGAA+AGG | 0.476115 | 6_1:+14812239 | Msa0876560:CDS |
| GAAGCTTCCAAGACTGATCC+AGG | 0.477697 | 6_1:-14813239 | None:intergenic |
| TTCTGGCATAGACAAGTCAT+TGG | 0.478796 | 6_1:+14811706 | Msa0876560:CDS |
| GATTAAGAAGTGGGAATGTA+TGG | 0.479978 | 6_1:+14813883 | Msa0876560:CDS |
| CAAGAGTGAGATTAAGAAGT+GGG | 0.481067 | 6_1:+14813874 | Msa0876560:CDS |
| TTTCTTTAGAGGTGAACTAA+AGG | 0.482940 | 6_1:-14812419 | None:intergenic |
| AGTCAAGGCCTCAGAAGCTT+CGG | 0.491390 | 6_1:+14811330 | Msa0876560:CDS |
| ATGTTCTTACCAAATGGAGT+TGG | 0.491448 | 6_1:-14810777 | None:intergenic |
| AGTGGAAATAAAGACTTTGT+TGG | 0.492104 | 6_1:+14812160 | Msa0876560:CDS |
| TCCAATGATCAAATGTTCAA+TGG | 0.495249 | 6_1:+14812661 | Msa0876560:CDS |
| TCTCAGTCCTGGATCAGTCT+TGG | 0.495904 | 6_1:+14813232 | Msa0876560:CDS |
| CATAAAACTCGAACACAAGA+AGG | 0.496476 | 6_1:+14812046 | Msa0876560:CDS |
| TAACGGCATTGTGACAGAAA+TGG | 0.498435 | 6_1:+14811640 | Msa0876560:CDS |
| TCTTCCAGTAGTCTTGATGA+AGG | 0.498605 | 6_1:+14813266 | Msa0876560:CDS |
| TGAGCCTTCATCAAGACTAC+TGG | 0.500552 | 6_1:-14813270 | None:intergenic |
| TAAGTGGTCGAACTCGGATA+AGG | 0.501056 | 6_1:+14812197 | Msa0876560:CDS |
| TCAAAGTGTCCTACCAATAA+CGG | 0.502704 | 6_1:+14811623 | Msa0876560:CDS |
| GTCTAGAGAAAATGCGGAGT+TGG | 0.503808 | 6_1:+14812555 | Msa0876560:CDS |
| GAAATTCTCGGACTCTTCAA+AGG | 0.504286 | 6_1:-14811488 | None:intergenic |
| TCTAATGTCAAATGTAAAAG+AGG | 0.505745 | 6_1:+14812337 | Msa0876560:CDS |
| ATTGGTAGGACACTTTGAAA+TGG | 0.506348 | 6_1:-14811618 | None:intergenic |
| CATGAGTTATGATCTTCTCC+TGG | 0.522859 | 6_1:-14811883 | None:intergenic |
| AAGTGGGAATTGTGCTATAG+AGG | 0.524576 | 6_1:+14811145 | Msa0876560:CDS |
| GAGGTTCCGAATAATCCAAC+AGG | 0.525298 | 6_1:-14813194 | None:intergenic |
| AAGAAGAATAATCAAAAGCT+AGG | 0.529032 | 6_1:+14810142 | Msa0876560:CDS |
| TTTCAAATGCGAATAAAAGT+GGG | 0.529808 | 6_1:+14811129 | Msa0876560:CDS |
| TCTGGCATAGACAAGTCATT+GGG | 0.533419 | 6_1:+14811707 | Msa0876560:CDS |
| ACCTAAAACATCTTCTCTCA+GGG | 0.533810 | 6_1:-14812500 | None:intergenic |
| AACGGAGGCGAACGAGAGAA+GGG | 0.539776 | 6_1:+14811355 | Msa0876560:CDS |
| AGTGATGATGCTAGTGTGAA+TGG | 0.540323 | 6_1:+14810094 | Msa0876560:CDS |
| CATGTTTCAACCGTTCAGGT+TGG | 0.553992 | 6_1:-14813409 | None:intergenic |
| TCAAGAGTGAGATTAAGAAG+TGG | 0.554941 | 6_1:+14813873 | Msa0876560:CDS |
| AAGAAGTGGGAATGTATGGT+TGG | 0.555304 | 6_1:+14813887 | Msa0876560:CDS |
| CAGTGTGAGACAAATCCTGT+TGG | 0.555796 | 6_1:+14813179 | Msa0876560:intron |
| AGTAGTCTTGATGAAGGCTC+AGG | 0.559971 | 6_1:+14813272 | Msa0876560:CDS |
| ACGAGAGAAGGGCAGTGACT+AGG | 0.561243 | 6_1:+14811366 | Msa0876560:CDS |
| CATGGAGGCTTAGAGGATGA+TGG | 0.562488 | 6_1:+14812001 | Msa0876560:CDS |
| AGATCAAAGCTGCGAATGCA+AGG | 0.568667 | 6_1:+14811303 | Msa0876560:CDS |
| AAGACTGACAGAGAGCAAGC+TGG | 0.569053 | 6_1:+14813550 | Msa0876560:CDS |
| TGTAGTTCTTCTCAGAAGCC+AGG | 0.569110 | 6_1:+14811865 | Msa0876560:CDS |
| AAACAAGTTTATTAGCGTGA+TGG | 0.570139 | 6_1:-14811463 | None:intergenic |
| AGTCTTGTAGCTAGGTTGAT+GGG | 0.572119 | 6_1:+14811197 | Msa0876560:CDS |
| ATCAACCTAGCTACAAGACT+TGG | 0.573014 | 6_1:-14811194 | None:intergenic |
| AGAGGTGAACTAAAGGAAGA+TGG | 0.574837 | 6_1:-14812412 | None:intergenic |
| TGACAGAAATGGCTGGAACT+CGG | 0.575576 | 6_1:+14811651 | Msa0876560:CDS |
| AATAATCAAAAGCTAGGTGG+TGG | 0.577202 | 6_1:+14810148 | Msa0876560:CDS |
| AATGGTAATCATCTCAGTCC+TGG | 0.577258 | 6_1:+14813221 | Msa0876560:CDS |
| CGAATGCAAGGCATGAGTCA+AGG | 0.578523 | 6_1:+14811315 | Msa0876560:CDS |
| AATTCTTGAAGAATCAATGC+AGG | 0.584695 | 6_1:-14812604 | None:intergenic |
| CAGGTTGGTTTATAGAGCCA+GGG | 0.586441 | 6_1:-14813394 | None:intergenic |
| GGCATTGTGACAGAAATGGC+TGG | 0.587128 | 6_1:+14811644 | Msa0876560:CDS |
| AAGCACCAAGTCTTGTAGCT+AGG | 0.588985 | 6_1:+14811189 | Msa0876560:CDS |
| AGAAGAGACTAACCAGGAGG+AGG | 0.589050 | 6_1:-14810250 | None:intergenic |
| TAAACACACCATAATAATTG+TGG | 0.593837 | 6_1:-14813787 | None:intergenic |
| GTGGGAATGTATGGTTGGCA+TGG | 0.594355 | 6_1:+14813892 | Msa0876560:CDS |
| ATTATGGTGTGTTTAAGTCA+TGG | 0.596620 | 6_1:+14813795 | Msa0876560:CDS |
| CCTGAACGGTTGAAACATGA+AGG | 0.602964 | 6_1:+14813413 | Msa0876560:CDS |
| AAAGCCTAAGTGGTCGAACT+CGG | 0.604253 | 6_1:+14812191 | Msa0876560:CDS |
| GTCACTAGGAACAATGAGGA+AGG | 0.607114 | 6_1:+14813620 | Msa0876560:CDS |
| TCCTGTGTTAAATGATGCTG+CGG | 0.608805 | 6_1:-14813450 | None:intergenic |
| GCTCTATAAACCAACCTGAA+CGG | 0.609858 | 6_1:+14813399 | Msa0876560:CDS |
| ATTGCTAATGGGAATAGTGG+AGG | 0.611632 | 6_1:+14811104 | Msa0876560:CDS |
| TGGTTCTTGGAAATGTCACT+AGG | 0.612409 | 6_1:+14813606 | Msa0876560:CDS |
| AGGAAACCTTCAAGCAGACA+AGG | 0.614022 | 6_1:+14812259 | Msa0876560:CDS |
| ACAACTTCAAGCACTGTGAG+TGG | 0.614489 | 6_1:+14812142 | Msa0876560:CDS |
| ATGCAAGAAATGAGAAGCTG+TGG | 0.616016 | 6_1:-14813650 | None:intergenic |
| GATTGATTCTGTATATCTTG+TGG | 0.620065 | 6_1:-14811674 | None:intergenic |
| AATGTCAAATGTAAAAGAGG+AGG | 0.620342 | 6_1:+14812340 | Msa0876560:CDS |
| TAGATTAGAAGAGACTAACC+AGG | 0.622920 | 6_1:-14810256 | None:intergenic |
| GTCACAATGCCGTTATTGGT+AGG | 0.622935 | 6_1:-14811632 | None:intergenic |
| ATAAAACTCGAACACAAGAA+GGG | 0.626617 | 6_1:+14812047 | Msa0876560:CDS |
| TTATCCGAGTTCGACCACTT+AGG | 0.628289 | 6_1:-14812195 | None:intergenic |
| TTATTCGGAACCTCGTGCAA+TGG | 0.628364 | 6_1:+14813203 | Msa0876560:CDS |
| TTCTGATAGTGATGATGGTG+AGG | 0.629680 | 6_1:+14811271 | Msa0876560:CDS |
| TCCGCAGCATCATTTAACAC+AGG | 0.629948 | 6_1:+14813449 | Msa0876560:CDS |
| ATTAAGGTCTAGAGAAAATG+CGG | 0.633842 | 6_1:+14812549 | Msa0876560:CDS |
| GGTTTGAATCAAAGCCTAAG+TGG | 0.634029 | 6_1:+14812181 | Msa0876560:CDS |
| GGCAGGTGTTGATATTGGTG+AGG | 0.636506 | 6_1:+14813991 | Msa0876560:CDS |
| AGAGTACATCTCGAAGCTCA+AGG | 0.642881 | 6_1:+14811519 | Msa0876560:CDS |
| GTTCAATGGCAAATGTCCCA+AGG | 0.650827 | 6_1:+14812675 | Msa0876560:CDS |
| AAGAATAATCAAAAGCTAGG+TGG | 0.660457 | 6_1:+14810145 | Msa0876560:CDS |
| CTGGCATAGACAAGTCATTG+GGG | 0.665747 | 6_1:+14811708 | Msa0876560:CDS |
| GTCATGGTGTGCATGCACAA+AGG | 0.670574 | 6_1:+14813811 | Msa0876560:CDS |
| AAATGTCACTAGGAACAATG+AGG | 0.695218 | 6_1:+14813616 | Msa0876560:CDS |
| TCATCGCGCAAACCGCATGG+AGG | 0.697799 | 6_1:+14811986 | Msa0876560:CDS |
| TCAGAAGCTTCGGAAAACGG+AGG | 0.698643 | 6_1:+14811340 | Msa0876560:CDS |
| AGACAAGGTTCTGATGCACA+AGG | 0.700943 | 6_1:+14812274 | Msa0876560:CDS |
| TAACGACAATAAGATGAACA+AGG | 0.709510 | 6_1:+14812384 | Msa0876560:CDS |
| TGGCATAGACAAGTCATTGG+GGG | 0.718479 | 6_1:+14811709 | Msa0876560:CDS |
| GAGATGATTACCATTGCACG+AGG | 0.725090 | 6_1:-14813213 | None:intergenic |
| CCTAAAACATCTTCTCTCAG+GGG | 0.725373 | 6_1:-14812499 | None:intergenic |
| ATTAGAAGAGACTAACCAGG+AGG | 0.734957 | 6_1:-14810253 | None:intergenic |
| TCATCCTCTAAGCCTCCATG+CGG | 0.772619 | 6_1:-14811998 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAGAAAACAATAGAAA+TGG | - | chr6_1:14810553-14810572 | None:intergenic | 15.0% |
| !!! | CATTGATTATAATGAAAATA+AGG | - | chr6_1:14812812-14812831 | None:intergenic | 15.0% |
| !!! | TTGACTTATTTATCATTTTT+TGG | + | chr6_1:14812840-14812859 | Msa0876560:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | + | chr6_1:14812966-14812985 | Msa0876560:intron | 15.0% |
| !! | AACATTGTAATTATATGTGT+TGG | + | chr6_1:14810371-14810390 | Msa0876560:intron | 20.0% |
| !! | TATTATATGTTCTTACCAAA+TGG | - | chr6_1:14810786-14810805 | None:intergenic | 20.0% |
| !! | AATCAATCATGTTATAATTC+TGG | + | chr6_1:14811689-14811708 | Msa0876560:CDS | 20.0% |
| !!! | TTGTCTAATTGTTATTTCTT+TGG | + | chr6_1:14812729-14812748 | Msa0876560:intron | 20.0% |
| !! | GAATATAATCAATGTATTGA+TGG | - | chr6_1:14812938-14812957 | None:intergenic | 20.0% |
| !!! | TTTTATTTAAGCTTGTACTT+TGG | + | chr6_1:14813104-14813123 | Msa0876560:intron | 20.0% |
| !! | TTTGCAATATCTTATCAATT+CGG | - | chr6_1:14813511-14813530 | None:intergenic | 20.0% |
| !! | AACTAAACCAAATAATTGAT+TGG | + | chr6_1:14813915-14813934 | Msa0876560:CDS | 20.0% |
| !! | ACTAAACCAAATAATTGATT+GGG | + | chr6_1:14813916-14813935 | Msa0876560:CDS | 20.0% |
| ! | AAGAAGAATAATCAAAAGCT+AGG | + | chr6_1:14810142-14810161 | Msa0876560:CDS | 25.0% |
| ! | CATATATTAACTATGAAGCA+CGG | + | chr6_1:14810319-14810338 | Msa0876560:intron | 25.0% |
| ! | AAATGTGAAAATTTGACATG+AGG | + | chr6_1:14810636-14810655 | Msa0876560:intron | 25.0% |
| ! | AATGTGAAAATTTGACATGA+GGG | + | chr6_1:14810637-14810656 | Msa0876560:intron | 25.0% |
| !! | GATTCTTTGAAGAAGTTTAA+AGG | + | chr6_1:14810733-14810752 | Msa0876560:CDS | 25.0% |
| !! | GAACATATAATAATTTGTGC+TGG | + | chr6_1:14810794-14810813 | Msa0876560:intron | 25.0% |
| !!! | GGTTTGAATTTAGTTTTCTT+TGG | + | chr6_1:14810815-14810834 | Msa0876560:intron | 25.0% |
| !! | CAAATTCAATTCCTTCTTTT+AGG | + | chr6_1:14811027-14811046 | Msa0876560:intron | 25.0% |
| !!! | TTTTGATTGTAGATTGCTAA+TGG | + | chr6_1:14811092-14811111 | Msa0876560:intron | 25.0% |
| ! | TTTGATTGTAGATTGCTAAT+GGG | + | chr6_1:14811093-14811112 | Msa0876560:intron | 25.0% |
| !! | TTTTCAAATGCGAATAAAAG+TGG | + | chr6_1:14811128-14811147 | Msa0876560:CDS | 25.0% |
| ! | TTTCAAATGCGAATAAAAGT+GGG | + | chr6_1:14811129-14811148 | Msa0876560:CDS | 25.0% |
| ! | ATCAGAAAATGAAGATTTCT+TGG | - | chr6_1:14811258-14811277 | None:intergenic | 25.0% |
| ! | CATTTGACATTAGAATTGTT+TGG | - | chr6_1:14812331-14812350 | None:intergenic | 25.0% |
| ! | TCTAATGTCAAATGTAAAAG+AGG | + | chr6_1:14812337-14812356 | Msa0876560:CDS | 25.0% |
| ! | CTTATTGTCGTTAATCTTAT+CGG | - | chr6_1:14812377-14812396 | None:intergenic | 25.0% |
| !!! | CAAAAAGTGTTAATGAGATA+AGG | + | chr6_1:14812452-14812471 | Msa0876560:CDS | 25.0% |
| ! | TATCACTTATCAGTAAATGT+AGG | + | chr6_1:14812774-14812793 | Msa0876560:intron | 25.0% |
| !! | ATATCCAACATATGATTTGT+AGG | - | chr6_1:14812867-14812886 | None:intergenic | 25.0% |
| ! | ATATGTTGGATATTCGTTAT+GGG | + | chr6_1:14812874-14812893 | Msa0876560:intron | 25.0% |
| !! | TGCAAAGTTTAGATTCTTTT+TGG | + | chr6_1:14813525-14813544 | Msa0876560:CDS | 25.0% |
| ! | TAAACACACCATAATAATTG+TGG | - | chr6_1:14813790-14813809 | None:intergenic | 25.0% |
| !! | TTGAAGATCTTGTAGATTTT+AGG | + | chr6_1:14814044-14814063 | Msa0876560:CDS | 25.0% |
| AAGAATAATCAAAAGCTAGG+TGG | + | chr6_1:14810145-14810164 | Msa0876560:CDS | 30.0% | |
| ! | TTTTCTCTCAGCTATTTGAT+TGG | + | chr6_1:14810182-14810201 | Msa0876560:CDS | 30.0% |
| ATAAGCAACTACCTAAAAGA+AGG | - | chr6_1:14811041-14811060 | None:intergenic | 30.0% | |
| ! | GATTTATCTCTCTTTGAAGA+TGG | - | chr6_1:14811236-14811255 | None:intergenic | 30.0% |
| !! | TCATTTTCTGATAGTGATGA+TGG | + | chr6_1:14811266-14811285 | Msa0876560:CDS | 30.0% |
| AAACAAGTTTATTAGCGTGA+TGG | - | chr6_1:14811466-14811485 | None:intergenic | 30.0% | |
| ! | GATTGATTCTGTATATCTTG+TGG | - | chr6_1:14811677-14811696 | None:intergenic | 30.0% |
| ! | ACTACATCATTTTCATGAGA+CGG | - | chr6_1:14811851-14811870 | None:intergenic | 30.0% |
| !! | TGTTCGAGTTTTATGTTTGA+AGG | - | chr6_1:14812041-14812060 | None:intergenic | 30.0% |
| ATAAAACTCGAACACAAGAA+GGG | + | chr6_1:14812047-14812066 | Msa0876560:CDS | 30.0% | |
| AGTGGAAATAAAGACTTTGT+TGG | + | chr6_1:14812160-14812179 | Msa0876560:CDS | 30.0% | |
| GATGCAAATTTGATCTAGAA+AGG | + | chr6_1:14812239-14812258 | Msa0876560:CDS | 30.0% | |
| AATGTCAAATGTAAAAGAGG+AGG | + | chr6_1:14812340-14812359 | Msa0876560:CDS | 30.0% | |
| TAACGACAATAAGATGAACA+AGG | + | chr6_1:14812384-14812403 | Msa0876560:CDS | 30.0% | |
| ! | TTTCTTTAGAGGTGAACTAA+AGG | - | chr6_1:14812422-14812441 | None:intergenic | 30.0% |
| ! | TAGTTCACCTCTAAAGAAAA+AGG | + | chr6_1:14812423-14812442 | Msa0876560:CDS | 30.0% |
| AACAGAAGCTGAAAGAATTA+AGG | + | chr6_1:14812533-14812552 | Msa0876560:CDS | 30.0% | |
| ATTAAGGTCTAGAGAAAATG+CGG | + | chr6_1:14812549-14812568 | Msa0876560:CDS | 30.0% | |
| AATTCTTGAAGAATCAATGC+AGG | - | chr6_1:14812607-14812626 | None:intergenic | 30.0% | |
| TTTGATCATTGGAACATGTT+AGG | - | chr6_1:14812654-14812673 | None:intergenic | 30.0% | |
| TCCAATGATCAAATGTTCAA+TGG | + | chr6_1:14812661-14812680 | Msa0876560:CDS | 30.0% | |
| ATAGAAAGAGAAAATGCACA+TGG | - | chr6_1:14812708-14812727 | None:intergenic | 30.0% | |
| CATATGTTGGATATTCGTTA+TGG | + | chr6_1:14812873-14812892 | Msa0876560:intron | 30.0% | |
| TATGTTGGATATTCGTTATG+GGG | + | chr6_1:14812875-14812894 | Msa0876560:intron | 30.0% | |
| ATTTAAGCTTGTACTTTGGT+TGG | + | chr6_1:14813108-14813127 | Msa0876560:intron | 30.0% | |
| ACAAATCCTGTTGGATTATT+CGG | + | chr6_1:14813188-14813207 | Msa0876560:CDS | 30.0% | |
| ATCAAAGACATTAAAACGAG+AGG | - | chr6_1:14813344-14813363 | None:intergenic | 30.0% | |
| TTGATCTTCAATTTGATTCC+AGG | + | chr6_1:14813359-14813378 | Msa0876560:intron | 30.0% | |
| TGATCTTCAATTTGATTCCA+GGG | + | chr6_1:14813360-14813379 | Msa0876560:intron | 30.0% | |
| TCATTTAACACAGGAAAGAT+AGG | + | chr6_1:14813458-14813477 | Msa0876560:CDS | 30.0% | |
| ATCAATTCGGTAAACAAGTT+TGG | - | chr6_1:14813498-14813517 | None:intergenic | 30.0% | |
| AGTTATCTTCATTGCTGAAT+TGG | + | chr6_1:14813586-14813605 | Msa0876560:CDS | 30.0% | |
| AATTGCTGCCACAATTATTA+TGG | + | chr6_1:14813779-14813798 | Msa0876560:CDS | 30.0% | |
| ATTATGGTGTGTTTAAGTCA+TGG | + | chr6_1:14813795-14813814 | Msa0876560:CDS | 30.0% | |
| TCATCTCCCAATCAATTATT+TGG | - | chr6_1:14813925-14813944 | None:intergenic | 30.0% | |
| AAAAGCTTCAATGTCGAAAT+CGG | - | chr6_1:14813969-14813988 | None:intergenic | 30.0% | |
| AATAATCAAAAGCTAGGTGG+TGG | + | chr6_1:14810148-14810167 | Msa0876560:CDS | 35.0% | |
| CAGCTATTTGATTGGAATAG+TGG | + | chr6_1:14810190-14810209 | Msa0876560:CDS | 35.0% | |
| TAGATTAGAAGAGACTAACC+AGG | - | chr6_1:14810259-14810278 | None:intergenic | 35.0% | |
| TTCATAGTATCACACACTTG+AGG | + | chr6_1:14810461-14810480 | Msa0876560:intron | 35.0% | |
| ! | GAGGGTCTTATACAAATTTG+TGG | + | chr6_1:14810655-14810674 | Msa0876560:intron | 35.0% |
| TGTTCTTACCAAATGGAGTT+GGG | - | chr6_1:14810779-14810798 | None:intergenic | 35.0% | |
| ATGTTCTTACCAAATGGAGT+TGG | - | chr6_1:14810780-14810799 | None:intergenic | 35.0% | |
| !!! | AGTTTTCTTTGGTGTTGACA+CGG | + | chr6_1:14810826-14810845 | Msa0876560:intron | 35.0% |
| ACCATTGAATCAAGATCAGA+CGG | + | chr6_1:14810888-14810907 | Msa0876560:intron | 35.0% | |
| TAGATTGCTAATGGGAATAG+TGG | + | chr6_1:14811101-14811120 | Msa0876560:intron | 35.0% | |
| !!! | GCTACTAAGATTTTAGAACC+TGG | + | chr6_1:14811554-14811573 | Msa0876560:CDS | 35.0% |
| GGAAGATGCAAGAAAACATT+TGG | - | chr6_1:14811600-14811619 | None:intergenic | 35.0% | |
| ! | ATTGGTAGGACACTTTGAAA+TGG | - | chr6_1:14811621-14811640 | None:intergenic | 35.0% |
| ! | TCAAAGTGTCCTACCAATAA+CGG | + | chr6_1:14811623-14811642 | Msa0876560:CDS | 35.0% |
| ! | GCGAAAACATCTGAAACAAT+AGG | - | chr6_1:14811785-14811804 | None:intergenic | 35.0% |
| ! | CACATATATTCTTCTGGAAG+TGG | - | chr6_1:14811951-14811970 | None:intergenic | 35.0% |
| TGCAAGCACATATATTCTTC+TGG | - | chr6_1:14811957-14811976 | None:intergenic | 35.0% | |
| CATAAAACTCGAACACAAGA+AGG | + | chr6_1:14812046-14812065 | Msa0876560:CDS | 35.0% | |
| ! | ACCTCTAAAGAAAAAGGAAG+AGG | + | chr6_1:14812429-14812448 | Msa0876560:CDS | 35.0% |
| ACCTAAAACATCTTCTCTCA+GGG | - | chr6_1:14812503-14812522 | None:intergenic | 35.0% | |
| ! | ATCAATGCAGGTGATCTTTT+AGG | - | chr6_1:14812595-14812614 | None:intergenic | 35.0% |
| GCCATTGAACATTTGATCAT+TGG | - | chr6_1:14812665-14812684 | None:intergenic | 35.0% | |
| TGGTCCTACAAATCATATGT+TGG | + | chr6_1:14812860-14812879 | Msa0876560:intron | 35.0% | |
| ATGTTGGATATTCGTTATGG+GGG | + | chr6_1:14812876-14812895 | Msa0876560:intron | 35.0% | |
| CCATACATGCTTTCAATCTA+AGG | - | chr6_1:14812904-14812923 | None:intergenic | 35.0% | |
| ! | CCTTAGATTGAAAGCATGTA+TGG | + | chr6_1:14812901-14812920 | Msa0876560:intron | 35.0% |
| ! | TCAATGTATTGATGGCATGT+CGG | - | chr6_1:14812930-14812949 | None:intergenic | 35.0% |
| GTCAGTATTAATGTTGTGCT+TGG | + | chr6_1:14812998-14813017 | Msa0876560:intron | 35.0% | |
| GAGTATAAGCAAAAGCTCTT+CGG | - | chr6_1:14813053-14813072 | None:intergenic | 35.0% | |
| ATCAAGACTACTGGAAGAAA+AGG | - | chr6_1:14813264-14813283 | None:intergenic | 35.0% | |
| ! | TTCATTGCTGAATTGGTTCT+TGG | + | chr6_1:14813593-14813612 | Msa0876560:CDS | 35.0% |
| AAATGTCACTAGGAACAATG+AGG | + | chr6_1:14813616-14813635 | Msa0876560:CDS | 35.0% | |
| TTTCAATCGAAGCCAACTTA+AGG | + | chr6_1:14813718-14813737 | Msa0876560:CDS | 35.0% | |
| TTCAATCGAAGCCAACTTAA+GGG | + | chr6_1:14813719-14813738 | Msa0876560:CDS | 35.0% | |
| CGAATAGAAATCCCTTAAGT+TGG | - | chr6_1:14813733-14813752 | None:intergenic | 35.0% | |
| ATCTCAGCTTTCTTGCATAA+AGG | - | chr6_1:14813839-14813858 | None:intergenic | 35.0% | |
| ! | ATGCAAGAAAGCTGAGATTT+TGG | + | chr6_1:14813841-14813860 | Msa0876560:CDS | 35.0% |
| TCAAGAGTGAGATTAAGAAG+TGG | + | chr6_1:14813873-14813892 | Msa0876560:CDS | 35.0% | |
| CAAGAGTGAGATTAAGAAGT+GGG | + | chr6_1:14813874-14813893 | Msa0876560:CDS | 35.0% | |
| GATTAAGAAGTGGGAATGTA+TGG | + | chr6_1:14813883-14813902 | Msa0876560:CDS | 35.0% | |
| TGAGTCACTCATTAGGAAAA+TGG | + | chr6_1:14813942-14813961 | Msa0876560:CDS | 35.0% | |
| ! | TTTCGACATTGAAGCTTTTG+AGG | + | chr6_1:14813970-14813989 | Msa0876560:CDS | 35.0% |
| ! | TGAGGATGTGCTTCAAATTT+TGG | + | chr6_1:14814009-14814028 | Msa0876560:CDS | 35.0% |
| ! | GATCTTGTAGATTTTAGGCT+TGG | + | chr6_1:14814049-14814068 | Msa0876560:CDS | 35.0% |
| ! | AGTGATGATGCTAGTGTGAA+TGG | + | chr6_1:14810094-14810113 | Msa0876560:CDS | 40.0% |
| !!! | AGGAGGAGGAAGAAGTTTTT+TGG | - | chr6_1:14810239-14810258 | None:intergenic | 40.0% |
| AAAAAACTTCTTCCTCCTCC+TGG | + | chr6_1:14810238-14810257 | Msa0876560:CDS | 40.0% | |
| ATTAGAAGAGACTAACCAGG+AGG | - | chr6_1:14810256-14810275 | None:intergenic | 40.0% | |
| !! | TATATGTGTTGGTGTCGTGT+CGG | + | chr6_1:14810382-14810401 | Msa0876560:intron | 40.0% |
| TATGAAGCACGTACACTTCT+CGG | - | chr6_1:14810447-14810466 | None:intergenic | 40.0% | |
| TAGTATCACACACTTGAGGT+TGG | + | chr6_1:14810465-14810484 | Msa0876560:intron | 40.0% | |
| !! | ACTTGAGGTTGGTAGTGTAA+AGG | + | chr6_1:14810476-14810495 | Msa0876560:intron | 40.0% |
| TGTGGAAACTGATGAGTGTT+TGG | + | chr6_1:14810673-14810692 | Msa0876560:intron | 40.0% | |
| ACCAAATGGAGTTGGGAATT+AGG | - | chr6_1:14810772-14810791 | None:intergenic | 40.0% | |
| ACCGTCTGATCTTGATTCAA+TGG | - | chr6_1:14810892-14810911 | None:intergenic | 40.0% | |
| ATAGACTGTTCGAACTTGAC+CGG | + | chr6_1:14810964-14810983 | Msa0876560:intron | 40.0% | |
| ATTGCTAATGGGAATAGTGG+AGG | + | chr6_1:14811104-14811123 | Msa0876560:CDS | 40.0% | |
| AAGTGGGAATTGTGCTATAG+AGG | + | chr6_1:14811145-14811164 | Msa0876560:CDS | 40.0% | |
| ATCAACCTAGCTACAAGACT+TGG | - | chr6_1:14811197-14811216 | None:intergenic | 40.0% | |
| ! | AAGTCTTGTAGCTAGGTTGA+TGG | + | chr6_1:14811196-14811215 | Msa0876560:CDS | 40.0% |
| !! | AGTCTTGTAGCTAGGTTGAT+GGG | + | chr6_1:14811197-14811216 | Msa0876560:CDS | 40.0% |
| !! | TTCTGATAGTGATGATGGTG+AGG | + | chr6_1:14811271-14811290 | Msa0876560:CDS | 40.0% |
| ! | GTGTTTTGTCACAAGTGAGA+AGG | + | chr6_1:14811417-14811436 | Msa0876560:CDS | 40.0% |
| GAAATTCTCGGACTCTTCAA+AGG | - | chr6_1:14811491-14811510 | None:intergenic | 40.0% | |
| GAAGAGTCCGAGAATTTCTT+CGG | + | chr6_1:14811493-14811512 | Msa0876560:CDS | 40.0% | |
| AAGAGTCCGAGAATTTCTTC+GGG | + | chr6_1:14811494-14811513 | Msa0876560:CDS | 40.0% | |
| CTCTTTCCCGAAGAAATTCT+CGG | - | chr6_1:14811503-14811522 | None:intergenic | 40.0% | |
| !!! | GATTTTAGAACCTGGTTTGC+AGG | + | chr6_1:14811562-14811581 | Msa0876560:CDS | 40.0% |
| TTCTGTCACAATGCCGTTAT+TGG | - | chr6_1:14811639-14811658 | None:intergenic | 40.0% | |
| TAACGGCATTGTGACAGAAA+TGG | + | chr6_1:14811640-14811659 | Msa0876560:CDS | 40.0% | |
| TTCTGGCATAGACAAGTCAT+TGG | + | chr6_1:14811706-14811725 | Msa0876560:CDS | 40.0% | |
| TCTGGCATAGACAAGTCATT+GGG | + | chr6_1:14811707-14811726 | Msa0876560:CDS | 40.0% | |
| GAGCATACGTGCAAAAATTG+CGG | + | chr6_1:14811731-14811750 | Msa0876560:CDS | 40.0% | |
| CATGAGTTATGATCTTCTCC+TGG | - | chr6_1:14811886-14811905 | None:intergenic | 40.0% | |
| GGTTTGAATCAAAGCCTAAG+TGG | + | chr6_1:14812181-14812200 | Msa0876560:CDS | 40.0% | |
| TTGCATCTATCTGCCTTAGT+AGG | - | chr6_1:14812226-14812245 | None:intergenic | 40.0% | |
| CTGATGCACAAGGAGAAAAA+AGG | + | chr6_1:14812284-14812303 | Msa0876560:CDS | 40.0% | |
| AGAGGTGAACTAAAGGAAGA+TGG | - | chr6_1:14812415-14812434 | None:intergenic | 40.0% | |
| ! | GCCTCTTCCTTTTTCTTTAG+AGG | - | chr6_1:14812433-14812452 | None:intergenic | 40.0% |
| CCTAAAACATCTTCTCTCAG+GGG | - | chr6_1:14812502-14812521 | None:intergenic | 40.0% | |
| CACCTAAAACATCTTCTCTC+AGG | - | chr6_1:14812504-14812523 | None:intergenic | 40.0% | |
| !! | GACATCGTACCTTGTTTCTA+CGG | + | chr6_1:14813152-14813171 | Msa0876560:intron | 40.0% |
| CACTGATATCCGTAGAAACA+AGG | - | chr6_1:14813164-14813183 | None:intergenic | 40.0% | |
| AATGGTAATCATCTCAGTCC+TGG | + | chr6_1:14813221-14813240 | Msa0876560:CDS | 40.0% | |
| ! | TCTTCCAGTAGTCTTGATGA+AGG | + | chr6_1:14813266-14813285 | Msa0876560:CDS | 40.0% |
| GCTCTATAAACCAACCTGAA+CGG | + | chr6_1:14813399-14813418 | Msa0876560:CDS | 40.0% | |
| TCCTGTGTTAAATGATGCTG+CGG | - | chr6_1:14813453-14813472 | None:intergenic | 40.0% | |
| TGGTTCTTGGAAATGTCACT+AGG | + | chr6_1:14813606-14813625 | Msa0876560:CDS | 40.0% | |
| ATGCAAGAAATGAGAAGCTG+TGG | - | chr6_1:14813653-14813672 | None:intergenic | 40.0% | |
| !!! | AGCTGAGATTTTGGTTCAAG+AGG | + | chr6_1:14813850-14813869 | Msa0876560:CDS | 40.0% |
| AAGAAGTGGGAATGTATGGT+TGG | + | chr6_1:14813887-14813906 | Msa0876560:CDS | 40.0% | |
| !! | TTTGAGGCAGGTGTTGATAT+TGG | + | chr6_1:14813986-14814005 | Msa0876560:CDS | 40.0% |
| ! | AAGCTAGGTGGTGGTTGTAT+TGG | + | chr6_1:14810157-14810176 | Msa0876560:CDS | 45.0% |
| ACGGATACAGACACAGACAT+TGG | + | chr6_1:14810338-14810357 | Msa0876560:intron | 45.0% | |
| TTCTCGGATTTGACGTGTTC+CGG | - | chr6_1:14810431-14810450 | None:intergenic | 45.0% | |
| GCCTAATTCCCAACTCCATT+TGG | + | chr6_1:14810768-14810787 | Msa0876560:CDS | 45.0% | |
| ACGAAGTCCACGTATTCACA+CGG | + | chr6_1:14810851-14810870 | Msa0876560:intron | 45.0% | |
| TATTCACACGGTCAGCACTT+CGG | + | chr6_1:14810863-14810882 | Msa0876560:intron | 45.0% | |
| ! | AAGCACCAAGTCTTGTAGCT+AGG | + | chr6_1:14811189-14811208 | Msa0876560:CDS | 45.0% |
| !! | TGATGATGGTGAGGAGTCTT+TGG | + | chr6_1:14811280-14811299 | Msa0876560:CDS | 45.0% |
| AGATCAAAGCTGCGAATGCA+AGG | + | chr6_1:14811303-14811322 | Msa0876560:CDS | 45.0% | |
| AGAGTACATCTCGAAGCTCA+AGG | + | chr6_1:14811519-14811538 | Msa0876560:CDS | 45.0% | |
| GTCACAATGCCGTTATTGGT+AGG | - | chr6_1:14811635-14811654 | None:intergenic | 45.0% | |
| TGACAGAAATGGCTGGAACT+CGG | + | chr6_1:14811651-14811670 | Msa0876560:CDS | 45.0% | |
| CTGGCATAGACAAGTCATTG+GGG | + | chr6_1:14811708-14811727 | Msa0876560:CDS | 45.0% | |
| TGGCATAGACAAGTCATTGG+GGG | + | chr6_1:14811709-14811728 | Msa0876560:CDS | 45.0% | |
| CGCTGATGCTGAAGAGAAAT+CGG | - | chr6_1:14811807-14811826 | None:intergenic | 45.0% | |
| TGTAGTTCTTCTCAGAAGCC+AGG | + | chr6_1:14811865-14811884 | Msa0876560:CDS | 45.0% | |
| ! | ACAACTTCAAGCACTGTGAG+TGG | + | chr6_1:14812142-14812161 | Msa0876560:CDS | 45.0% |
| AAAGCCTAAGTGGTCGAACT+CGG | + | chr6_1:14812191-14812210 | Msa0876560:CDS | 45.0% | |
| TTATCCGAGTTCGACCACTT+AGG | - | chr6_1:14812198-14812217 | None:intergenic | 45.0% | |
| TAAGTGGTCGAACTCGGATA+AGG | + | chr6_1:14812197-14812216 | Msa0876560:CDS | 45.0% | |
| TCGGATAAGGTCTCCTACTA+AGG | + | chr6_1:14812210-14812229 | Msa0876560:CDS | 45.0% | |
| AGGAAACCTTCAAGCAGACA+AGG | + | chr6_1:14812259-14812278 | Msa0876560:CDS | 45.0% | |
| TCAGAACCTTGTCTGCTTGA+AGG | - | chr6_1:14812268-14812287 | None:intergenic | 45.0% | |
| ! | AGACAAGGTTCTGATGCACA+AGG | + | chr6_1:14812274-14812293 | Msa0876560:CDS | 45.0% |
| ! | CCCCTGAGAGAAGATGTTTT+AGG | + | chr6_1:14812499-14812518 | Msa0876560:CDS | 45.0% |
| GTCTAGAGAAAATGCGGAGT+TGG | + | chr6_1:14812555-14812574 | Msa0876560:CDS | 45.0% | |
| ! | GAAAATGCGGAGTTGGTTAC+TGG | + | chr6_1:14812562-14812581 | Msa0876560:CDS | 45.0% |
| GTTCAATGGCAAATGTCCCA+AGG | + | chr6_1:14812675-14812694 | Msa0876560:CDS | 45.0% | |
| AATGGCAAATGTCCCAAGGT+TGG | + | chr6_1:14812679-14812698 | Msa0876560:intron | 45.0% | |
| TGCACATGGAAACCAACCTT+GGG | - | chr6_1:14812694-14812713 | None:intergenic | 45.0% | |
| ATGCACATGGAAACCAACCT+TGG | - | chr6_1:14812695-14812714 | None:intergenic | 45.0% | |
| TAAGCTACGAACCACCAACA+CGG | - | chr6_1:14813027-14813046 | None:intergenic | 45.0% | |
| CAGTGTGAGACAAATCCTGT+TGG | + | chr6_1:14813179-14813198 | Msa0876560:intron | 45.0% | |
| GAGGTTCCGAATAATCCAAC+AGG | - | chr6_1:14813197-14813216 | None:intergenic | 45.0% | |
| TTATTCGGAACCTCGTGCAA+TGG | + | chr6_1:14813203-14813222 | Msa0876560:CDS | 45.0% | |
| GAGATGATTACCATTGCACG+AGG | - | chr6_1:14813216-14813235 | None:intergenic | 45.0% | |
| TGAGCCTTCATCAAGACTAC+TGG | - | chr6_1:14813273-14813292 | None:intergenic | 45.0% | |
| ! | AGTAGTCTTGATGAAGGCTC+AGG | + | chr6_1:14813272-14813291 | Msa0876560:CDS | 45.0% |
| !! | CAGGTTGGTTTATAGAGCCA+GGG | - | chr6_1:14813397-14813416 | None:intergenic | 45.0% |
| !! | TCAGGTTGGTTTATAGAGCC+AGG | - | chr6_1:14813398-14813417 | None:intergenic | 45.0% |
| CATGTTTCAACCGTTCAGGT+TGG | - | chr6_1:14813412-14813431 | None:intergenic | 45.0% | |
| CCTTCATGTTTCAACCGTTC+AGG | - | chr6_1:14813416-14813435 | None:intergenic | 45.0% | |
| CCTGAACGGTTGAAACATGA+AGG | + | chr6_1:14813413-14813432 | Msa0876560:CDS | 45.0% | |
| TCCGCAGCATCATTTAACAC+AGG | + | chr6_1:14813449-14813468 | Msa0876560:CDS | 45.0% | |
| GTCACTAGGAACAATGAGGA+AGG | + | chr6_1:14813620-14813639 | Msa0876560:CDS | 45.0% | |
| TGGGAGATGAGTCACTCATT+AGG | + | chr6_1:14813935-14813954 | Msa0876560:CDS | 45.0% | |
| !!! | GACATTGAAGCTTTTGAGGC+AGG | + | chr6_1:14813974-14813993 | Msa0876560:CDS | 45.0% |
| AGAAGAGACTAACCAGGAGG+AGG | - | chr6_1:14810253-14810272 | None:intergenic | 50.0% | |
| CGAATGCAAGGCATGAGTCA+AGG | + | chr6_1:14811315-14811334 | Msa0876560:CDS | 50.0% | |
| AGTCAAGGCCTCAGAAGCTT+CGG | + | chr6_1:14811330-14811349 | Msa0876560:CDS | 50.0% | |
| GCCTCAGAAGCTTCGGAAAA+CGG | + | chr6_1:14811337-14811356 | Msa0876560:CDS | 50.0% | |
| ! | TCCGTTTTCCGAAGCTTCTG+AGG | - | chr6_1:14811341-14811360 | None:intergenic | 50.0% |
| TCAGAAGCTTCGGAAAACGG+AGG | + | chr6_1:14811340-14811359 | Msa0876560:CDS | 50.0% | |
| AGAAGGGCAGTGACTAGGTT+TGG | + | chr6_1:14811371-14811390 | Msa0876560:CDS | 50.0% | |
| CTGTTTGTAGCCTGCAAACC+AGG | - | chr6_1:14811575-14811594 | None:intergenic | 50.0% | |
| GGCATTGTGACAGAAATGGC+TGG | + | chr6_1:14811644-14811663 | Msa0876560:CDS | 50.0% | |
| TCATCCTCTAAGCCTCCATG+CGG | - | chr6_1:14812001-14812020 | None:intergenic | 50.0% | |
| CATGGAGGCTTAGAGGATGA+TGG | + | chr6_1:14812001-14812020 | Msa0876560:CDS | 50.0% | |
| TCAGGGGTCGATGATGTCTT+TGG | - | chr6_1:14812486-14812505 | None:intergenic | 50.0% | |
| TCTCAGTCCTGGATCAGTCT+TGG | + | chr6_1:14813232-14813251 | Msa0876560:CDS | 50.0% | |
| GAAGCTTCCAAGACTGATCC+AGG | - | chr6_1:14813242-14813261 | None:intergenic | 50.0% | |
| AAGACTGACAGAGAGCAAGC+TGG | + | chr6_1:14813550-14813569 | Msa0876560:CDS | 50.0% | |
| GTCATGGTGTGCATGCACAA+AGG | + | chr6_1:14813811-14813830 | Msa0876560:CDS | 50.0% | |
| GTGGGAATGTATGGTTGGCA+TGG | + | chr6_1:14813892-14813911 | Msa0876560:CDS | 50.0% | |
| !! | GGCAGGTGTTGATATTGGTG+AGG | + | chr6_1:14813991-14814010 | Msa0876560:CDS | 50.0% |
| AGACACGTACGTGTCTGCAC+CGG | + | chr6_1:14810409-14810428 | Msa0876560:intron | 55.0% | |
| ! | GTGCTGACCGTGTGAATACG+TGG | - | chr6_1:14810861-14810880 | None:intergenic | 55.0% |
| GACTGTTCGAACTTGACCGG+CGG | + | chr6_1:14810967-14810986 | Msa0876560:intron | 55.0% | |
| AAACGGAGGCGAACGAGAGA+AGG | + | chr6_1:14811354-14811373 | Msa0876560:CDS | 55.0% | |
| AACGGAGGCGAACGAGAGAA+GGG | + | chr6_1:14811355-14811374 | Msa0876560:CDS | 55.0% | |
| ACGAGAGAAGGGCAGTGACT+AGG | + | chr6_1:14811366-14811385 | Msa0876560:CDS | 55.0% | |
| GATTCATCGCGCAAACCGCA+TGG | + | chr6_1:14811983-14812002 | Msa0876560:CDS | 55.0% | |
| CAAACCGCATGGAGGCTTAG+AGG | + | chr6_1:14811994-14812013 | Msa0876560:CDS | 55.0% | |
| !! | GTTGTGCTTGGTGTCCGTGT+TGG | + | chr6_1:14813010-14813029 | Msa0876560:intron | 55.0% |
| CCAGGGTGAAAACAATGCCC+TGG | - | chr6_1:14813380-14813399 | None:intergenic | 55.0% | |
| !!! | CCAGGGCATTGTTTTCACCC+TGG | + | chr6_1:14813377-14813396 | Msa0876560:intron | 55.0% |
| GTCAGCACATCAGAAGCCGC+CGG | - | chr6_1:14810986-14811005 | None:intergenic | 60.0% | |
| TCATCGCGCAAACCGCATGG+AGG | + | chr6_1:14811986-14812005 | Msa0876560:CDS | 60.0% | |
| !! | GTGCTTGGTGTCCGTGTTGG+TGG | + | chr6_1:14813013-14813032 | Msa0876560:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 14810091 | 14814081 | 14810091 | ID=Msa0876560;Name=Msa0876560 |
| chr6_1 | mRNA | 14810091 | 14814081 | 14810091 | ID=Msa0876560-mRNA-1;Parent=Msa0876560;Name=Msa0876560-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.5|0.2|0.8|0.75|0.6|5|0|881 |
| chr6_1 | exon | 14810091 | 14810263 | 14810091 | ID=Msa0876560-mRNA-1:exon:4241;Parent=Msa0876560-mRNA-1 |
| chr6_1 | exon | 14810723 | 14810789 | 14810723 | ID=Msa0876560-mRNA-1:exon:4242;Parent=Msa0876560-mRNA-1 |
| chr6_1 | exon | 14811104 | 14812696 | 14811104 | ID=Msa0876560-mRNA-1:exon:4243;Parent=Msa0876560-mRNA-1 |
| chr6_1 | exon | 14813182 | 14813293 | 14813182 | ID=Msa0876560-mRNA-1:exon:4244;Parent=Msa0876560-mRNA-1 |
| chr6_1 | exon | 14813381 | 14814081 | 14813381 | ID=Msa0876560-mRNA-1:exon:4245;Parent=Msa0876560-mRNA-1 |
| chr6_1 | CDS | 14810091 | 14810263 | 14810091 | ID=Msa0876560-mRNA-1:cds;Parent=Msa0876560-mRNA-1 |
| chr6_1 | CDS | 14810723 | 14810789 | 14810723 | ID=Msa0876560-mRNA-1:cds;Parent=Msa0876560-mRNA-1 |
| chr6_1 | CDS | 14811104 | 14812696 | 14811104 | ID=Msa0876560-mRNA-1:cds;Parent=Msa0876560-mRNA-1 |
| chr6_1 | CDS | 14813182 | 14813293 | 14813182 | ID=Msa0876560-mRNA-1:cds;Parent=Msa0876560-mRNA-1 |
| chr6_1 | CDS | 14813381 | 14814081 | 14813381 | ID=Msa0876560-mRNA-1:cds;Parent=Msa0876560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
