AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1101090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101090 MtrunA17_Chr7g0252821 99.471 189 1 0 29 217 1 189 1.81e-137 382
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1101090 AT5G06660.1 83.511 188 27 2 33 216 8 195 1.25e-101 292
Msa1101090 AT3G12030.1 83.069 189 28 2 33 217 8 196 1.90e-94 274

Find 56 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTTCTCTTTGTGGTATT+TGG 0.104469 7_3:-31620258 Msa1101090:CDS
AAAAGGCTTGAATGGCAATT+TGG 0.263436 7_3:+31620200 None:intergenic
AAATTGCCATTCAAGCCTTT+TGG 0.268584 7_3:-31620198 Msa1101090:CDS
TGGTTCTCTTTGTGGTATTT+GGG 0.271042 7_3:-31620257 Msa1101090:CDS
AACAAATTTGCAGAAGTTCT+TGG 0.285687 7_3:-31620079 Msa1101090:CDS
GAACTAGATCAACTGGTCTT+TGG 0.297367 7_3:+31620006 None:intergenic
CTTCATAGTCTCGAGTTTCT+TGG 0.298943 7_3:+31620407 None:intergenic
AACTAGATCAACTGGTCTTT+GGG 0.342623 7_3:+31620007 None:intergenic
CAAATTTGTTCTGATACTAA+TGG 0.343691 7_3:+31620092 None:intergenic
GGTTGCTCTGGTTCTCTTTG+TGG 0.348482 7_3:-31620265 Msa1101090:CDS
CCGCCAAGGGGTGCAGGTGC+TGG 0.379709 7_3:-31620048 Msa1101090:CDS
ACAAATTTGCAGAAGTTCTT+GGG 0.395345 7_3:-31620078 Msa1101090:CDS
CTGGTCTTTGGGTCTGGCAT+TGG 0.395377 7_3:+31620018 None:intergenic
GCGAAGGTTCTTGTAAGAAT+TGG 0.409536 7_3:+31620449 None:intergenic
CATAACAGAACTAGATCAAC+TGG 0.415941 7_3:+31619999 None:intergenic
AGAAACAAAGACAGCAAACT+TGG 0.427908 7_3:+31620603 None:intergenic
ATCCGGTGGTGTGGTTGCTC+TGG 0.434250 7_3:-31620277 Msa1101090:CDS
TTTGCACCGCCAAGGGGTGC+AGG 0.441884 7_3:-31620054 Msa1101090:CDS
TCTCTCTTCAAGTTTAAATC+CGG 0.442713 7_3:-31620294 Msa1101090:CDS
CTTGGAAGCTTTGTCGATAG+AGG 0.450316 7_3:+31620425 None:intergenic
CTCGGATGGCCTCACTGTTG+TGG 0.453737 7_3:-31620532 Msa1101090:CDS
CTGCTCAATTCGCTATTTGA+AGG 0.455366 7_3:-31620234 Msa1101090:CDS
GATCAACTGGTCTTTGGGTC+TGG 0.458148 7_3:+31620012 None:intergenic
CCAGCACCTGCACCCCTTGG+CGG 0.467860 7_3:+31620048 None:intergenic
TCGGATGGCCTCACTGTTGT+GGG 0.468742 7_3:-31620531 Msa1101090:CDS
CTTCTCAGATTTCAAGTACT+CGG 0.477023 7_3:-31620550 Msa1101090:CDS
ACAAGCCCAAAAGGCTTGAA+TGG 0.484472 7_3:+31620192 None:intergenic
ATCTTCATAACAAGCCCAAA+AGG 0.485077 7_3:+31620183 None:intergenic
TTGTCTGTGAGGCCATCTCA+TGG 0.486509 7_3:-31620488 Msa1101090:CDS
CTCTTCAAGTTTAAATCCGG+TGG 0.507122 7_3:-31620291 Msa1101090:CDS
AGACCAGCACCTGCACCCCT+TGG 0.507589 7_3:+31620045 None:intergenic
CGAGTACTTGAAATCTGAGA+AGG 0.540066 7_3:+31620551 None:intergenic
AGTCACGACTAGATTCTTTG+AGG 0.544166 7_3:+31620319 None:intergenic
CAATTCGCTATTTGAAGGCA+AGG 0.549223 7_3:-31620229 Msa1101090:CDS
TGTCTGTGAGGCCATCTCAT+GGG 0.550860 7_3:-31620487 Msa1101090:CDS
CAAGTTTAAATCCGGTGGTG+TGG 0.561902 7_3:-31620286 Msa1101090:CDS
AACCAGAGCAACCACACCAC+CGG 0.570086 7_3:+31620275 None:intergenic
TCAGATTTCAAGTACTCGGA+TGG 0.574798 7_3:-31620546 Msa1101090:CDS
AAATGCCATGGAACAATCAG+TGG 0.579830 7_3:+31620131 None:intergenic
ATGAGCCATCGAGGGTTGCA+AGG 0.585212 7_3:-31620162 Msa1101090:CDS
CTTTGTCGATAGAGGAGCGA+AGG 0.585269 7_3:+31620433 None:intergenic
CATTACCTTGCAACCCTCGA+TGG 0.592832 7_3:+31620157 None:intergenic
TGATCCCACTGATTGTTCCA+TGG 0.598157 7_3:-31620136 Msa1101090:CDS
GTAAATAAGAACCCATGAGA+TGG 0.599701 7_3:+31620476 None:intergenic
TTCTGATACTAATGGAACAC+AGG 0.602611 7_3:+31620100 None:intergenic
CTGTACAGCTATTGTCTGTG+AGG 0.606267 7_3:-31620499 Msa1101090:CDS
ATCTGAGAAGGGATATGCCA+TGG 0.607371 7_3:+31620563 None:intergenic
CAGGAAGTATAGAAATGCCA+TGG 0.612214 7_3:+31620119 None:intergenic
GAGAAGGGATATGCCATGGA+TGG 0.614420 7_3:+31620567 None:intergenic
TTATGAAGATGAGCCATCGA+GGG 0.622078 7_3:-31620170 Msa1101090:CDS
GAGTACTTGAAATCTGAGAA+GGG 0.629348 7_3:+31620552 None:intergenic
GGTTCTTGTAAGAATTGGTG+CGG 0.654185 7_3:+31620454 None:intergenic
CTTTGAGGCTAGTCTCAACA+CGG 0.657831 7_3:+31620334 None:intergenic
AATGCCATGGAACAATCAGT+GGG 0.668389 7_3:+31620132 None:intergenic
GTTATGAAGATGAGCCATCG+AGG 0.685544 7_3:-31620171 Msa1101090:CDS
AAGAGATACCCACAACAGTG+AGG 0.718334 7_3:+31620523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATGAATATAGGTT+TGG + chr7_3:31620230-31620249 None:intergenic 15.0%
!! AGAACATAAAAAATGAATAT+AGG + chr7_3:31620235-31620254 None:intergenic 15.0%
!!! ATTTTTTATGTTCTATAAAC+AGG - chr7_3:31620241-31620260 Msa1101090:CDS 15.0%
!! ATAAAAAATGAATATAGGTT+TGG + chr7_3:31620230-31620249 None:intergenic 15.0%
!! AGAACATAAAAAATGAATAT+AGG + chr7_3:31620235-31620254 None:intergenic 15.0%
!!! ATTTTTTATGTTCTATAAAC+AGG - chr7_3:31620241-31620260 Msa1101090:CDS 15.0%
!! ATTCTTTCTAACATAACATA+AGG - chr7_3:31620073-31620092 Msa1101090:CDS 20.0%
!! TTCTTTCTAACATAACATAA+GGG - chr7_3:31620074-31620093 Msa1101090:CDS 20.0%
!! TGGAGTATAAAGTTATAAAT+AGG + chr7_3:31620210-31620229 None:intergenic 20.0%
!! ATTCTTTCTAACATAACATA+AGG - chr7_3:31620073-31620092 Msa1101090:CDS 20.0%
!! TTCTTTCTAACATAACATAA+GGG - chr7_3:31620074-31620093 Msa1101090:CDS 20.0%
!! TGGAGTATAAAGTTATAAAT+AGG + chr7_3:31620210-31620229 None:intergenic 20.0%
! TCTTTCTAACATAACATAAG+GGG - chr7_3:31620075-31620094 Msa1101090:CDS 25.0%
! TCTTTCTTAACATAACATAG+AGG - chr7_3:31620117-31620136 Msa1101090:CDS 25.0%
! AAGTAGCAAAGATATGATTA+TGG - chr7_3:31620156-31620175 Msa1101090:CDS 25.0%
! CAAAGATATGATTATGGATT+AGG - chr7_3:31620162-31620181 Msa1101090:CDS 25.0%
! TGAAGTTTGTGTATTTATAC+AGG - chr7_3:31620278-31620297 Msa1101090:CDS 25.0%
!! TTGTGTATTTATACAGGTTT+TGG - chr7_3:31620284-31620303 Msa1101090:CDS 25.0%
!! CAAATTTGTTCTGATACTAA+TGG + chr7_3:31620846-31620865 None:intergenic 25.0%
! TCTTTCTAACATAACATAAG+GGG - chr7_3:31620075-31620094 Msa1101090:CDS 25.0%
! TCTTTCTTAACATAACATAG+AGG - chr7_3:31620117-31620136 Msa1101090:CDS 25.0%
! AAGTAGCAAAGATATGATTA+TGG - chr7_3:31620156-31620175 Msa1101090:CDS 25.0%
! CAAAGATATGATTATGGATT+AGG - chr7_3:31620162-31620181 Msa1101090:CDS 25.0%
! TGAAGTTTGTGTATTTATAC+AGG - chr7_3:31620278-31620297 Msa1101090:CDS 25.0%
!! TTGTGTATTTATACAGGTTT+TGG - chr7_3:31620284-31620303 Msa1101090:CDS 25.0%
!! CAAATTTGTTCTGATACTAA+TGG + chr7_3:31620846-31620865 None:intergenic 25.0%
AAAAGAACAAACAGCAAACT+CGG + chr7_3:31620019-31620038 None:intergenic 30.0%
!!! AGTTTGCTGTTTGTTCTTTT+TGG - chr7_3:31620019-31620038 Msa1101090:CDS 30.0%
! AGATTTTTCTTTACCATCCA+TGG - chr7_3:31620355-31620374 Msa1101090:CDS 30.0%
! TCTCTCTTCAAGTTTAAATC+CGG - chr7_3:31620641-31620660 Msa1101090:intron 30.0%
AACAAATTTGCAGAAGTTCT+TGG - chr7_3:31620856-31620875 Msa1101090:intron 30.0%
ACAAATTTGCAGAAGTTCTT+GGG - chr7_3:31620857-31620876 Msa1101090:intron 30.0%
AAAAGAACAAACAGCAAACT+CGG + chr7_3:31620019-31620038 None:intergenic 30.0%
!!! AGTTTGCTGTTTGTTCTTTT+TGG - chr7_3:31620019-31620038 Msa1101090:CDS 30.0%
! AGATTTTTCTTTACCATCCA+TGG - chr7_3:31620355-31620374 Msa1101090:CDS 30.0%
! TCTCTCTTCAAGTTTAAATC+CGG - chr7_3:31620641-31620660 Msa1101090:intron 30.0%
AACAAATTTGCAGAAGTTCT+TGG - chr7_3:31620856-31620875 Msa1101090:intron 30.0%
ACAAATTTGCAGAAGTTCTT+GGG - chr7_3:31620857-31620876 Msa1101090:intron 30.0%
AGAAACAAAGACAGCAAACT+TGG + chr7_3:31620335-31620354 None:intergenic 35.0%
GAGTACTTGAAATCTGAGAA+GGG + chr7_3:31620386-31620405 None:intergenic 35.0%
! CTTCTCAGATTTCAAGTACT+CGG - chr7_3:31620385-31620404 Msa1101090:CDS 35.0%
GTAAATAAGAACCCATGAGA+TGG + chr7_3:31620462-31620481 None:intergenic 35.0%
!!! CTCAACACGGTCAATTTTTT+TGG + chr7_3:31620591-31620610 None:intergenic 35.0%
TGGTTCTCTTTGTGGTATTT+GGG - chr7_3:31620678-31620697 Msa1101090:intron 35.0%
AAAAGGCTTGAATGGCAATT+TGG + chr7_3:31620738-31620757 None:intergenic 35.0%
! AAATTGCCATTCAAGCCTTT+TGG - chr7_3:31620737-31620756 Msa1101090:intron 35.0%
! AATTGCCATTCAAGCCTTTT+GGG - chr7_3:31620738-31620757 Msa1101090:intron 35.0%
ATCTTCATAACAAGCCCAAA+AGG + chr7_3:31620755-31620774 None:intergenic 35.0%
TTCTGATACTAATGGAACAC+AGG + chr7_3:31620838-31620857 None:intergenic 35.0%
!! AACTAGATCAACTGGTCTTT+GGG + chr7_3:31620931-31620950 None:intergenic 35.0%
CATAACAGAACTAGATCAAC+TGG + chr7_3:31620939-31620958 None:intergenic 35.0%
AGAAACAAAGACAGCAAACT+TGG + chr7_3:31620335-31620354 None:intergenic 35.0%
GAGTACTTGAAATCTGAGAA+GGG + chr7_3:31620386-31620405 None:intergenic 35.0%
! CTTCTCAGATTTCAAGTACT+CGG - chr7_3:31620385-31620404 Msa1101090:CDS 35.0%
GTAAATAAGAACCCATGAGA+TGG + chr7_3:31620462-31620481 None:intergenic 35.0%
!!! CTCAACACGGTCAATTTTTT+TGG + chr7_3:31620591-31620610 None:intergenic 35.0%
TGGTTCTCTTTGTGGTATTT+GGG - chr7_3:31620678-31620697 Msa1101090:intron 35.0%
AAAAGGCTTGAATGGCAATT+TGG + chr7_3:31620738-31620757 None:intergenic 35.0%
! AAATTGCCATTCAAGCCTTT+TGG - chr7_3:31620737-31620756 Msa1101090:intron 35.0%
! AATTGCCATTCAAGCCTTTT+GGG - chr7_3:31620738-31620757 Msa1101090:intron 35.0%
ATCTTCATAACAAGCCCAAA+AGG + chr7_3:31620755-31620774 None:intergenic 35.0%
TTCTGATACTAATGGAACAC+AGG + chr7_3:31620838-31620857 None:intergenic 35.0%
!! AACTAGATCAACTGGTCTTT+GGG + chr7_3:31620931-31620950 None:intergenic 35.0%
CATAACAGAACTAGATCAAC+TGG + chr7_3:31620939-31620958 None:intergenic 35.0%
CGAGTACTTGAAATCTGAGA+AGG + chr7_3:31620387-31620406 None:intergenic 40.0%
! TCAGATTTCAAGTACTCGGA+TGG - chr7_3:31620389-31620408 Msa1101090:CDS 40.0%
GGTTCTTGTAAGAATTGGTG+CGG + chr7_3:31620484-31620503 None:intergenic 40.0%
GCGAAGGTTCTTGTAAGAAT+TGG + chr7_3:31620489-31620508 None:intergenic 40.0%
CTTCATAGTCTCGAGTTTCT+TGG + chr7_3:31620531-31620550 None:intergenic 40.0%
AGTCACGACTAGATTCTTTG+AGG + chr7_3:31620619-31620638 None:intergenic 40.0%
! CTCTTCAAGTTTAAATCCGG+TGG - chr7_3:31620644-31620663 Msa1101090:intron 40.0%
! CTGGTTCTCTTTGTGGTATT+TGG - chr7_3:31620677-31620696 Msa1101090:intron 40.0%
CTGCTCAATTCGCTATTTGA+AGG - chr7_3:31620701-31620720 Msa1101090:intron 40.0%
CAATTCGCTATTTGAAGGCA+AGG - chr7_3:31620706-31620725 Msa1101090:intron 40.0%
TTATGAAGATGAGCCATCGA+GGG - chr7_3:31620765-31620784 Msa1101090:intron 40.0%
AATGCCATGGAACAATCAGT+GGG + chr7_3:31620806-31620825 None:intergenic 40.0%
AAATGCCATGGAACAATCAG+TGG + chr7_3:31620807-31620826 None:intergenic 40.0%
! CAGGAAGTATAGAAATGCCA+TGG + chr7_3:31620819-31620838 None:intergenic 40.0%
!! GAACTAGATCAACTGGTCTT+TGG + chr7_3:31620932-31620951 None:intergenic 40.0%
CGAGTACTTGAAATCTGAGA+AGG + chr7_3:31620387-31620406 None:intergenic 40.0%
! TCAGATTTCAAGTACTCGGA+TGG - chr7_3:31620389-31620408 Msa1101090:CDS 40.0%
GGTTCTTGTAAGAATTGGTG+CGG + chr7_3:31620484-31620503 None:intergenic 40.0%
GCGAAGGTTCTTGTAAGAAT+TGG + chr7_3:31620489-31620508 None:intergenic 40.0%
CTTCATAGTCTCGAGTTTCT+TGG + chr7_3:31620531-31620550 None:intergenic 40.0%
AGTCACGACTAGATTCTTTG+AGG + chr7_3:31620619-31620638 None:intergenic 40.0%
! CTCTTCAAGTTTAAATCCGG+TGG - chr7_3:31620644-31620663 Msa1101090:intron 40.0%
! CTGGTTCTCTTTGTGGTATT+TGG - chr7_3:31620677-31620696 Msa1101090:intron 40.0%
CTGCTCAATTCGCTATTTGA+AGG - chr7_3:31620701-31620720 Msa1101090:intron 40.0%
CAATTCGCTATTTGAAGGCA+AGG - chr7_3:31620706-31620725 Msa1101090:intron 40.0%
TTATGAAGATGAGCCATCGA+GGG - chr7_3:31620765-31620784 Msa1101090:intron 40.0%
AATGCCATGGAACAATCAGT+GGG + chr7_3:31620806-31620825 None:intergenic 40.0%
AAATGCCATGGAACAATCAG+TGG + chr7_3:31620807-31620826 None:intergenic 40.0%
! CAGGAAGTATAGAAATGCCA+TGG + chr7_3:31620819-31620838 None:intergenic 40.0%
!! GAACTAGATCAACTGGTCTT+TGG + chr7_3:31620932-31620951 None:intergenic 40.0%
ATCTGAGAAGGGATATGCCA+TGG + chr7_3:31620375-31620394 None:intergenic 45.0%
AAGAGATACCCACAACAGTG+AGG + chr7_3:31620415-31620434 None:intergenic 45.0%
CTGTACAGCTATTGTCTGTG+AGG - chr7_3:31620436-31620455 Msa1101090:CDS 45.0%
! CTTGGAAGCTTTGTCGATAG+AGG + chr7_3:31620513-31620532 None:intergenic 45.0%
!! CTTTGAGGCTAGTCTCAACA+CGG + chr7_3:31620604-31620623 None:intergenic 45.0%
CAAGTTTAAATCCGGTGGTG+TGG - chr7_3:31620649-31620668 Msa1101090:intron 45.0%
ACAAGCCCAAAAGGCTTGAA+TGG + chr7_3:31620746-31620765 None:intergenic 45.0%
GTTATGAAGATGAGCCATCG+AGG - chr7_3:31620764-31620783 Msa1101090:intron 45.0%
! TGATCCCACTGATTGTTCCA+TGG - chr7_3:31620799-31620818 Msa1101090:intron 45.0%
ATCTGAGAAGGGATATGCCA+TGG + chr7_3:31620375-31620394 None:intergenic 45.0%
AAGAGATACCCACAACAGTG+AGG + chr7_3:31620415-31620434 None:intergenic 45.0%
CTGTACAGCTATTGTCTGTG+AGG - chr7_3:31620436-31620455 Msa1101090:CDS 45.0%
! CTTGGAAGCTTTGTCGATAG+AGG + chr7_3:31620513-31620532 None:intergenic 45.0%
!! CTTTGAGGCTAGTCTCAACA+CGG + chr7_3:31620604-31620623 None:intergenic 45.0%
CAAGTTTAAATCCGGTGGTG+TGG - chr7_3:31620649-31620668 Msa1101090:intron 45.0%
ACAAGCCCAAAAGGCTTGAA+TGG + chr7_3:31620746-31620765 None:intergenic 45.0%
GTTATGAAGATGAGCCATCG+AGG - chr7_3:31620764-31620783 Msa1101090:intron 45.0%
! TGATCCCACTGATTGTTCCA+TGG - chr7_3:31620799-31620818 Msa1101090:intron 45.0%
GAGAAGGGATATGCCATGGA+TGG + chr7_3:31620371-31620390 None:intergenic 50.0%
TTGTCTGTGAGGCCATCTCA+TGG - chr7_3:31620447-31620466 Msa1101090:CDS 50.0%
TGTCTGTGAGGCCATCTCAT+GGG - chr7_3:31620448-31620467 Msa1101090:CDS 50.0%
CTTTGTCGATAGAGGAGCGA+AGG + chr7_3:31620505-31620524 None:intergenic 50.0%
!! GGTTGCTCTGGTTCTCTTTG+TGG - chr7_3:31620670-31620689 Msa1101090:intron 50.0%
CATTACCTTGCAACCCTCGA+TGG + chr7_3:31620781-31620800 None:intergenic 50.0%
!! GATCAACTGGTCTTTGGGTC+TGG + chr7_3:31620926-31620945 None:intergenic 50.0%
GAGAAGGGATATGCCATGGA+TGG + chr7_3:31620371-31620390 None:intergenic 50.0%
TTGTCTGTGAGGCCATCTCA+TGG - chr7_3:31620447-31620466 Msa1101090:CDS 50.0%
TGTCTGTGAGGCCATCTCAT+GGG - chr7_3:31620448-31620467 Msa1101090:CDS 50.0%
CTTTGTCGATAGAGGAGCGA+AGG + chr7_3:31620505-31620524 None:intergenic 50.0%
!! GGTTGCTCTGGTTCTCTTTG+TGG - chr7_3:31620670-31620689 Msa1101090:intron 50.0%
CATTACCTTGCAACCCTCGA+TGG + chr7_3:31620781-31620800 None:intergenic 50.0%
!! GATCAACTGGTCTTTGGGTC+TGG + chr7_3:31620926-31620945 None:intergenic 50.0%
TCGGATGGCCTCACTGTTGT+GGG - chr7_3:31620404-31620423 Msa1101090:CDS 55.0%
AACCAGAGCAACCACACCAC+CGG + chr7_3:31620663-31620682 None:intergenic 55.0%
ATGAGCCATCGAGGGTTGCA+AGG - chr7_3:31620773-31620792 Msa1101090:intron 55.0%
! TCTTGGGTTTTGCACCGCCA+AGG - chr7_3:31620873-31620892 Msa1101090:intron 55.0%
! CTTGGGTTTTGCACCGCCAA+GGG - chr7_3:31620874-31620893 Msa1101090:intron 55.0%
! TTGGGTTTTGCACCGCCAAG+GGG - chr7_3:31620875-31620894 Msa1101090:intron 55.0%
! CTGGTCTTTGGGTCTGGCAT+TGG + chr7_3:31620920-31620939 None:intergenic 55.0%
TCGGATGGCCTCACTGTTGT+GGG - chr7_3:31620404-31620423 Msa1101090:CDS 55.0%
AACCAGAGCAACCACACCAC+CGG + chr7_3:31620663-31620682 None:intergenic 55.0%
ATGAGCCATCGAGGGTTGCA+AGG - chr7_3:31620773-31620792 Msa1101090:intron 55.0%
! TCTTGGGTTTTGCACCGCCA+AGG - chr7_3:31620873-31620892 Msa1101090:intron 55.0%
! CTTGGGTTTTGCACCGCCAA+GGG - chr7_3:31620874-31620893 Msa1101090:intron 55.0%
! TTGGGTTTTGCACCGCCAAG+GGG - chr7_3:31620875-31620894 Msa1101090:intron 55.0%
! CTGGTCTTTGGGTCTGGCAT+TGG + chr7_3:31620920-31620939 None:intergenic 55.0%
CTCGGATGGCCTCACTGTTG+TGG - chr7_3:31620403-31620422 Msa1101090:CDS 60.0%
ATCCGGTGGTGTGGTTGCTC+TGG - chr7_3:31620658-31620677 Msa1101090:intron 60.0%
CTCGGATGGCCTCACTGTTG+TGG - chr7_3:31620403-31620422 Msa1101090:CDS 60.0%
ATCCGGTGGTGTGGTTGCTC+TGG - chr7_3:31620658-31620677 Msa1101090:intron 60.0%
! TTTGCACCGCCAAGGGGTGC+AGG - chr7_3:31620881-31620900 Msa1101090:intron 65.0%
AGACCAGCACCTGCACCCCT+TGG + chr7_3:31620893-31620912 None:intergenic 65.0%
! TTTGCACCGCCAAGGGGTGC+AGG - chr7_3:31620881-31620900 Msa1101090:intron 65.0%
AGACCAGCACCTGCACCCCT+TGG + chr7_3:31620893-31620912 None:intergenic 65.0%
CCAGCACCTGCACCCCTTGG+CGG + chr7_3:31620890-31620909 None:intergenic 70.0%
CCAGCACCTGCACCCCTTGG+CGG + chr7_3:31620890-31620909 None:intergenic 70.0%
! CCGCCAAGGGGTGCAGGTGC+TGG - chr7_3:31620887-31620906 Msa1101090:intron 75.0%
! CCGCCAAGGGGTGCAGGTGC+TGG - chr7_3:31620887-31620906 Msa1101090:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 31619994 31620963 31619994 ID=Msa1101090;Name=Msa1101090
chr7_3 mRNA 31619994 31620963 31619994 ID=Msa1101090-mRNA-1;Parent=Msa1101090;Name=Msa1101090-mRNA-1;_AED=0.21;_eAED=0.23;_QI=0|0|0.5|1|0|0|2|20|217
chr7_3 exon 31619994 31620657 31619994 ID=Msa1101090-mRNA-1:exon:6774;Parent=Msa1101090-mRNA-1
chr7_3 exon 31620954 31620963 31620954 ID=Msa1101090-mRNA-1:exon:6773;Parent=Msa1101090-mRNA-1
chr7_3 CDS 31620954 31620963 31620954 ID=Msa1101090-mRNA-1:cds;Parent=Msa1101090-mRNA-1
chr7_3 CDS 31620014 31620657 31620014 ID=Msa1101090-mRNA-1:cds;Parent=Msa1101090-mRNA-1
chr7_3 three_prime_UTR 31619994 31620013 31619994 ID=Msa1101090-mRNA-1:three_prime_utr;Parent=Msa1101090-mRNA-1
Gene Sequence

>Msa1101090

ATGTTTAACAGTTTTGGAAATTCAAGCAATTCTGATCAAGATCCAAGTTTGCTGTCTTTGTTTCTAGATTTTTCTTTACCATCCATGGCATATCCCTTCTCAGATTTCAAGTACTCGGATGGCCTCACTGTTGTGGGTATCTCTTTCTGTACAGCTATTGTCTGTGAGGCCATCTCATGGGTTCTTATTTACCGCACCAATTCTTACAAGAACCTTCGCTCCTCTATCGACAAAGCTTCCAAGAAACTCGAGACTATGAAGACAGACAACAACAAAATCAACATTAAGAAGTCGAAGACCAAAAAAATTGACCGTGTTGAGACTAGCCTCAAAGAATCTAGTCGTGACTTGTCTCTCTTCAAGTTTAAATCCGGTGGTGTGGTTGCTCTGGTTCTCTTTGTGGTATTTGGGCTGCTCAATTCGCTATTTGAAGGCAAGGTAGTTGCCAAATTGCCATTCAAGCCTTTTGGGCTTGTTATGAAGATGAGCCATCGAGGGTTGCAAGGTAATGATCCCACTGATTGTTCCATGGCATTTCTATACTTCCTGTGTTCCATTAGTATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCGCCAAGGGGTGCAGGTGCTGGTCTCTTTCCAATGCCAGACCCAAAGACCAGTTGA

Protein sequence

>Msa1101090

MFNSFGNSSNSDQDPSLLSLFLDFSLPSMAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDNNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGLFPMPDPKTS*