AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0981810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981810 MtrunA17_Chr2g0282091 96.774 496 15 1 1 496 1 495 0.0 993
Msa0981810 MtrunA17_Chr8g0359961 49.784 462 230 2 19 479 23 483 2.83e-162 469
Msa0981810 MtrunA17_Chr8g0368151 32.671 453 301 3 30 479 24 475 5.95e-84 268
Msa0981810 MtrunA17_Chr4g0021331 32.773 476 307 8 19 486 17 487 8.43e-71 233
Msa0981810 MtrunA17_Chr2g0303221 33.417 398 261 4 19 414 21 416 5.31e-66 221
Msa0981810 MtrunA17_Chr2g0324251 30.958 449 298 4 4 444 7 451 7.24e-66 220
Msa0981810 MtrunA17_Chr1g0194521 30.464 453 303 7 27 477 88 530 8.14e-65 219
Msa0981810 MtrunA17_Chr1g0185601 31.409 433 287 5 63 490 71 498 1.19e-63 215
Msa0981810 MtrunA17_Chr3g0132571 28.247 485 339 4 7 488 20 498 2.40e-60 206
Msa0981810 MtrunA17_Chr1g0155351 31.081 296 202 2 49 343 74 368 1.53e-45 164
Msa0981810 MtrunA17_Chr7g0256181 27.455 448 291 10 44 478 171 597 2.39e-39 150
Msa0981810 MtrunA17_Chr1g0171501 26.339 448 296 9 44 478 154 580 5.86e-37 144
Msa0981810 MtrunA17_Chr8g0335951 27.854 219 157 1 226 444 190 407 3.71e-25 108
Msa0981810 MtrunA17_Chr8g0335951 28.761 226 134 3 27 225 70 295 4.05e-19 89.7
Msa0981810 MtrunA17_Chr2g0328121 21.918 438 328 6 44 473 58 489 2.56e-24 105
Msa0981810 MtrunA17_Chr8g0349421 26.154 195 143 1 250 444 2 195 3.93e-18 84.0
Msa0981810 MtrunA17_Chr4g0059671 22.174 460 324 14 33 478 81 520 9.63e-18 86.7
Msa0981810 MtrunA17_Chr8g0349431 37.190 121 75 1 38 157 2 122 4.56e-17 77.4
Msa0981810 MtrunA17_Chr8g0375231 22.740 365 256 9 136 488 225 575 4.48e-15 78.2
Msa0981810 MtrunA17_Chr8g0391651 23.964 338 232 8 142 466 289 614 3.03e-14 75.5
Msa0981810 MtrunA17_Chr1g0210801 22.082 317 202 7 68 379 214 490 1.88e-12 69.7
Msa0981810 MtrunA17_Chr2g0331911 23.295 352 234 12 142 475 172 505 9.59e-12 67.4
Msa0981810 MtrunA17_Chr1g0196741 21.875 352 260 7 115 461 304 645 1.50e-11 67.0
Msa0981810 MtrunA17_Chr5g0410901 22.263 274 194 7 73 336 397 661 3.18e-11 65.9
Msa0981810 MtrunA17_Chr4g0047591 27.083 192 127 4 124 311 631 813 4.84e-11 65.5
Msa0981810 MtrunA17_Chr4g0033981 22.867 293 209 6 113 396 268 552 6.17e-11 64.7
Msa0981810 MtrunA17_Chr7g0220501 26.619 278 168 13 160 422 314 570 8.24e-11 64.7
Msa0981810 MtrunA17_Chr1g0162281 23.022 417 266 12 67 441 305 708 9.74e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0981810 AT4G21705.1 54.192 489 220 3 5 491 3 489 0.0 549
Msa0981810 AT1G60770.1 30.544 478 328 3 15 489 9 485 1.08e-79 257
Msa0981810 AT2G20710.1 34.568 405 261 3 39 442 48 449 9.59e-78 252
Msa0981810 AT4G01990.1 31.579 475 320 4 6 478 16 487 5.45e-74 242
Msa0981810 AT1G02150.1 30.519 462 300 4 30 476 68 523 2.26e-69 231
Msa0981810 AT4G02820.1 32.739 449 294 5 44 490 76 518 5.03e-68 228
Msa0981810 AT1G02370.1 31.027 477 325 4 6 479 48 523 1.80e-67 226
Msa0981810 AT2G20710.2 33.053 357 235 3 87 442 1 354 5.96e-61 205
Msa0981810 AT5G27460.1 30.000 440 302 3 44 478 53 491 9.10e-58 199
Msa0981810 AT1G28020.1 32.722 327 218 2 40 364 47 373 2.21e-53 187
Msa0981810 AT5G09450.1 30.547 311 214 2 27 335 53 363 5.52e-42 155
Msa0981810 AT1G15480.1 26.695 472 308 13 22 478 120 568 3.15e-40 153
Msa0981810 AT1G80270.1 25.478 471 318 10 20 478 121 570 3.67e-39 150
Msa0981810 AT1G80270.3 25.478 471 318 10 20 478 121 570 3.67e-39 150
Msa0981810 AT1G80270.2 25.478 471 318 10 20 478 121 570 3.67e-39 150
Msa0981810 AT1G80270.5 25.478 471 318 10 20 478 121 570 3.67e-39 150
Msa0981810 AT1G80270.4 25.478 471 318 10 20 478 121 570 3.67e-39 150
Msa0981810 AT3G15590.1 24.036 441 316 7 44 478 156 583 2.13e-32 131
Msa0981810 AT3G15590.2 24.036 441 316 7 44 478 156 583 2.13e-32 131
Msa0981810 AT1G28000.1 27.636 275 195 4 23 293 27 301 7.09e-28 115
Msa0981810 AT3G11380.1 31.013 316 180 7 64 374 78 360 1.93e-25 110
Msa0981810 AT3G11380.1 26.776 183 132 2 42 222 359 541 6.53e-14 74.7
Msa0981810 AT1G07590.1 22.426 437 329 5 43 473 79 511 5.35e-23 102
Msa0981810 AT1G43010.1 32.961 179 116 2 19 196 26 201 1.22e-21 94.7
Msa0981810 AT1G74850.1 22.363 474 340 14 33 494 84 541 9.87e-19 90.1
Msa0981810 AT1G05670.1 23.250 400 282 8 92 486 256 635 4.49e-17 84.7
Msa0981810 AT1G05670.2 23.250 400 282 8 92 486 256 635 4.49e-17 84.7
Msa0981810 AT1G05670.3 23.250 400 282 8 92 486 256 635 4.49e-17 84.7
Msa0981810 AT3G23020.1 22.087 412 295 10 61 462 263 658 3.66e-15 79.0
Msa0981810 AT2G18940.1 21.513 423 265 12 63 468 138 510 6.45e-14 75.1
Msa0981810 AT1G12775.1 24.920 313 209 8 90 396 201 493 1.64e-13 73.6
Msa0981810 AT1G09820.1 22.667 375 271 7 124 488 217 582 5.25e-13 72.0
Msa0981810 AT2G31400.2 24.855 173 129 1 123 295 402 573 1.52e-12 70.5
Msa0981810 AT2G31400.1 24.855 173 129 1 123 295 402 573 1.60e-12 70.5
Msa0981810 AT1G62910.1 21.788 358 254 10 132 477 225 568 2.51e-12 69.7
Msa0981810 AT5G42310.1 20.904 354 268 6 116 464 323 669 2.28e-11 66.6
Msa0981810 AT1G03560.1 22.546 377 266 10 128 488 143 509 3.02e-11 66.2
Msa0981810 AT1G63130.1 21.585 366 261 10 123 476 214 565 3.34e-11 66.2
Msa0981810 AT1G63130.2 21.585 366 261 10 123 476 214 565 3.34e-11 66.2
Msa0981810 AT5G25630.3 21.083 351 257 7 135 474 69 410 4.77e-11 65.5
Msa0981810 AT5G25630.1 21.083 351 257 7 135 474 120 461 5.67e-11 65.5
Msa0981810 AT1G62930.1 22.129 357 252 10 132 476 222 564 6.88e-11 65.1
Msa0981810 AT3G11350.1 26.752 157 95 3 75 227 54 194 6.89e-11 64.3
Msa0981810 AT1G19290.2 25.685 292 173 8 114 367 247 532 8.08e-11 65.1
Msa0981810 AT1G19290.1 25.685 292 173 8 114 367 247 532 8.08e-11 65.1
Msa0981810 AT1G62720.1 21.201 283 200 4 103 365 94 373 9.70e-11 64.3

Find 164 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGTAACTGTTATGATTT+TGG 0.117352 6_4:+21356686 Msa0981810:CDS
GCACAAATCATCACTATTAT+TGG 0.198034 6_4:-21357607 None:intergenic
GATACATGTGTCTATTCTTT+TGG 0.208098 6_4:-21357018 None:intergenic
TTTCCATATCCCATATTCTT+AGG 0.217341 6_4:-21356553 None:intergenic
ATGGTCCAGCAATTAAATTT+AGG 0.236635 6_4:-21357706 None:intergenic
ATCCTTCAAGCTATTAAAAT+AGG 0.262548 6_4:-21356036 None:intergenic
TCAGTTTCACATTATATTCT+TGG 0.267276 6_4:+21357182 Msa0981810:three_prime_UTR
ACTCGGTTTCTTGGTCTTGC+TGG 0.271768 6_4:-21355487 None:intergenic
TTATATTCTTGGGTGGCTTC+TGG 0.274039 6_4:+21357193 Msa0981810:three_prime_UTR
GCAGATCGATACTTGCTTAA+AGG 0.275587 6_4:+21356830 Msa0981810:CDS
AGAATGAGGTCCTAAGAATA+TGG 0.278569 6_4:+21356543 Msa0981810:CDS
TGGTCCAGCAATTAAATTTA+GGG 0.286036 6_4:-21357705 None:intergenic
ATGTTCGGAAAATCTATTAT+TGG 0.287942 6_4:-21357841 None:intergenic
AAGCATGGCTTCTGCTTTCT+CGG 0.320374 6_4:-21356753 None:intergenic
GATCTTATTGGAAGGGTTCA+TGG 0.327797 6_4:+21355996 Msa0981810:CDS
TCGAAGAAGCTTCCAATTCA+TGG 0.328194 6_4:-21355418 None:intergenic
AAGCCATGCTTCAAGATATA+TGG 0.335530 6_4:+21356765 Msa0981810:CDS
CATAACCATGTTAGAATCTC+TGG 0.342640 6_4:+21356610 Msa0981810:CDS
GCGGTGCATTTGGATCTTAT+TGG 0.344729 6_4:+21355984 Msa0981810:CDS
CTTGCAAGAGGTGCCTAAAC+AGG 0.347174 6_4:+21356582 Msa0981810:CDS
AGTTGAACACGCGGTGCATT+TGG 0.351285 6_4:+21355974 Msa0981810:CDS
TTGAAGAAAATGAAGGAGTT+GGG 0.355086 6_4:+21356140 Msa0981810:CDS
AGAATCTGTATAGGTTCTTA+TGG 0.359558 6_4:+21356293 Msa0981810:CDS
GGAAAATTAGAGCGACAAAA+AGG 0.371327 6_4:+21357423 Msa0981810:three_prime_UTR
TGGTTATGAAATCCCTGTTT+AGG 0.372027 6_4:-21356595 None:intergenic
GGAGTAGAGACTCGGTTTCT+TGG 0.373699 6_4:-21355496 None:intergenic
AAATGCACCGCGTGTTCAAC+TGG 0.375339 6_4:-21355972 None:intergenic
TTTATCTTTCTACTCTGTTT+CGG 0.380071 6_4:-21355370 None:intergenic
CAGTTTCACATTATATTCTT+GGG 0.383033 6_4:+21357183 Msa0981810:three_prime_UTR
CGCAGTATAGAAGTTGGGTT+TGG 0.385471 6_4:-21357325 None:intergenic
AAACAGTGCTTGACATTAAT+CGG 0.388805 6_4:-21357657 None:intergenic
GGTCCTAAGAATATGGGATA+TGG 0.390967 6_4:+21356550 Msa0981810:CDS
CACAAATCATCACTATTATT+GGG 0.392023 6_4:-21357606 None:intergenic
GTTGTTTCTGCTTCCAATGT+TGG 0.394799 6_4:-21355451 None:intergenic
ATTACCGAGTGGACTGATTA+CGG 0.412339 6_4:-21355517 None:intergenic
TTTAGCTACAGAATCTGTAT+AGG 0.413382 6_4:+21356284 Msa0981810:CDS
ATGTGTCTATACACGAATAT+AGG 0.415522 6_4:+21356197 Msa0981810:CDS
TGTTGAAGATGCAGAAGCTT+TGG 0.416545 6_4:+21356976 Msa0981810:CDS
CGGTAGCCATAGCCATGAAT+TGG 0.417031 6_4:+21355406 Msa0981810:exon
TAAAGAAGTGGATGGGGTCT+TGG 0.417418 6_4:+21357072 Msa0981810:CDS
TACCCAACGACTACCACATT+TGG 0.419941 6_4:-21356713 None:intergenic
GGACAGCATGAGAAAGTTCC+TGG 0.420846 6_4:+21356218 Msa0981810:CDS
CTAGAAATCACCCTATGGTT+TGG 0.423067 6_4:-21356923 None:intergenic
AGCATGGCTTCTGCTTTCTC+GGG 0.424331 6_4:-21356752 None:intergenic
ACAAGGAGAGGGGTGGAGAG+AGG 0.425994 6_4:+21357472 Msa0981810:three_prime_UTR
GTTTAGATTTGAATAAGTTA+TGG 0.426744 6_4:+21357676 Msa0981810:three_prime_UTR
TATGGCTACCGCAGCTAGCT+AGG 0.428925 6_4:-21355394 None:intergenic
TGGTTGATAAAAGAGTTCTT+AGG 0.432090 6_4:-21357305 None:intergenic
GAAGATAACATTGACGAAAC+CGG 0.436299 6_4:+21357106 Msa0981810:CDS
TCAAGGCTATAGCACCTCTA+TGG 0.441857 6_4:+21357572 Msa0981810:three_prime_UTR
CAAGGAGAGGGGTGGAGAGA+GGG 0.443513 6_4:+21357473 Msa0981810:three_prime_UTR
AACTGCCGTCTGTTTGTATC+CGG 0.448674 6_4:+21356883 Msa0981810:CDS
CCACAGTGGCAATGTGCAGC+TGG 0.449273 6_4:+21357514 Msa0981810:three_prime_UTR
GGTGAGATGGAGAAAGCATT+GGG 0.450506 6_4:+21356851 Msa0981810:CDS
TTGCTCCTCAGCTCGATGAT+TGG 0.452570 6_4:+21355553 Msa0981810:CDS
ATCTCTCTTTACGCTCGTCT+TGG 0.452624 6_4:+21356515 Msa0981810:CDS
GCTGGTGATTCGTTGGCAAT+TGG 0.455620 6_4:+21357532 Msa0981810:three_prime_UTR
TGATTTCTAGTATATATAGT+TGG 0.456686 6_4:+21356936 Msa0981810:CDS
TAGATTCACACAAGCTCTCC+AGG 0.458468 6_4:+21355644 Msa0981810:CDS
TCTAGTATATATAGTTGGAT+TGG 0.460561 6_4:+21356941 Msa0981810:CDS
CGAAGCATTGCAACCAACAT+TGG 0.468246 6_4:+21355438 Msa0981810:CDS
TGCAAGACTCATTTATGTCT+CGG 0.468957 6_4:+21357218 Msa0981810:three_prime_UTR
CTCAAGGAATGGGAATTCTC+TGG 0.469520 6_4:+21356668 Msa0981810:CDS
CCCGTACATAAGCCTTGAGC+AGG 0.472012 6_4:-21357045 None:intergenic
TAACGATTCTCAGAAAGAAA+TGG 0.478474 6_4:-21355344 None:intergenic
TGCAGCAAGCCCTACAAACC+TGG 0.480088 6_4:+21357402 Msa0981810:three_prime_UTR
AAATTTAATTGCTGGACCAT+TGG 0.481467 6_4:+21357709 Msa0981810:three_prime_UTR
AAAGAGTTCTTAGGTGAGTA+AGG 0.481749 6_4:-21357296 None:intergenic
TGTTTGGAAAATTAGCGAAC+GGG 0.481754 6_4:-21357804 None:intergenic
TTTGAAGAAAATGAAGGAGT+TGG 0.482777 6_4:+21356139 Msa0981810:CDS
CTGACAAAATACTCAAGGAA+TGG 0.484280 6_4:+21356657 Msa0981810:CDS
CCCTGCTCAAGGCTTATGTA+CGG 0.485056 6_4:+21357044 Msa0981810:CDS
GAGCGTAAAGAGAGATAAGA+TGG 0.487305 6_4:-21356508 None:intergenic
TGACAAAATACTCAAGGAAT+GGG 0.487616 6_4:+21356658 Msa0981810:CDS
GAATGAGGTCCTAAGAATAT+GGG 0.499256 6_4:+21356544 Msa0981810:CDS
TTCCAAATGTGGTAGTCGTT+GGG 0.500034 6_4:+21356711 Msa0981810:CDS
GCTTCAAGATATATGGAAGA+AGG 0.502780 6_4:+21356772 Msa0981810:CDS
GAGGAAATGTGAGAAGAGGC+TGG 0.505534 6_4:+21356460 Msa0981810:CDS
TGCATTTGGATCTTATTGGA+AGG 0.506380 6_4:+21355988 Msa0981810:CDS
AACCACACATTGTGATGGAC+TGG 0.512443 6_4:+21356369 Msa0981810:CDS
AAGGAGAGGGGTGGAGAGAG+GGG 0.514897 6_4:+21357474 Msa0981810:three_prime_UTR
AGTACACGGATACAAACTCT+TGG 0.516752 6_4:+21356798 Msa0981810:CDS
AAGCTTCCAATTCATGGCTA+TGG 0.517848 6_4:-21355412 None:intergenic
GTTCCAAATGTGGTAGTCGT+TGG 0.520404 6_4:+21356710 Msa0981810:CDS
GATGGTCGCAGTATAGAAGT+TGG 0.525457 6_4:-21357331 None:intergenic
TGAAGAAAATGAAGGAGTTG+GGG 0.527815 6_4:+21356141 Msa0981810:CDS
TGTTGCGACATTAATAAATG+TGG 0.527932 6_4:-21357376 None:intergenic
ATCCCATTTGAAGAAAATGA+AGG 0.528704 6_4:+21356133 Msa0981810:CDS
AGGTGAGATGGAGAAAGCAT+TGG 0.529189 6_4:+21356850 Msa0981810:CDS
CTTCCATATATCTTGAAGCA+TGG 0.529618 6_4:-21356768 None:intergenic
ATGGTCGCAGTATAGAAGTT+GGG 0.530245 6_4:-21357330 None:intergenic
TGCAGAGAAGAATTAGACAT+TGG 0.532017 6_4:+21357627 Msa0981810:three_prime_UTR
CGGGCTGATAAAGAAGTGGA+TGG 0.536370 6_4:+21357064 Msa0981810:CDS
GCATTTGGATCTTATTGGAA+GGG 0.536623 6_4:+21355989 Msa0981810:CDS
AAGAGGCTGGATGACAAAGA+TGG 0.536846 6_4:+21356473 Msa0981810:CDS
GAAGACTATATTGAAAGAGA+TGG 0.537414 6_4:+21356340 Msa0981810:CDS
TTCGTTGGCAATTGGCATCA+CGG 0.539031 6_4:+21357540 Msa0981810:three_prime_UTR
TGGTGTGTTTAATGAGATGA+AGG 0.540567 6_4:+21356238 Msa0981810:CDS
ATGGCTACCGCAGCTAGCTA+GGG 0.540777 6_4:-21355393 None:intergenic
CTTCAAGATATATGGAAGAA+GGG 0.541835 6_4:+21356773 Msa0981810:CDS
TTTCACATTATATTCTTGGG+TGG 0.542533 6_4:+21357186 Msa0981810:three_prime_UTR
AGAAATTGTCAACATGAAGA+AGG 0.546543 6_4:+21357138 Msa0981810:CDS
CCTGCTCAAGGCTTATGTAC+GGG 0.548458 6_4:+21357045 Msa0981810:CDS
GCTCGATGATTGGATCTACA+AGG 0.552055 6_4:+21355563 Msa0981810:CDS
ATTCTGTAGCTAAAGTTGTC+CGG 0.554644 6_4:-21356275 None:intergenic
TCATCACTATTATTGGGAGC+TGG 0.562053 6_4:-21357600 None:intergenic
ATACTTGCTTAAAGGTGAGA+TGG 0.562401 6_4:+21356838 Msa0981810:CDS
GTGGTTTCACAGTGAGGAGA+CGG 0.566613 6_4:-21357357 None:intergenic
GGGCTGATAAAGAAGTGGAT+GGG 0.569189 6_4:+21357065 Msa0981810:CDS
CAATGTTATCTTCTTTCATG+CGG 0.570453 6_4:-21357096 None:intergenic
ATATACTAGAAATCACCCTA+TGG 0.571014 6_4:-21356928 None:intergenic
GGGAGCTGGTAGAGCCATAG+AGG 0.571877 6_4:-21357586 None:intergenic
AGAATCTCTGGTAAAGCTTG+AGG 0.572752 6_4:+21356622 Msa0981810:CDS
TAAAGTTGTCCGGCAAAACA+TGG 0.573693 6_4:-21356265 None:intergenic
AGGCAAACATTTGCTACCAA+TGG 0.575620 6_4:-21357725 None:intergenic
ATCAAACATGAAACAAGGAG+AGG 0.576590 6_4:+21357460 Msa0981810:three_prime_UTR
AAAACGGAAGCCAAACCATA+GGG 0.584461 6_4:+21356913 Msa0981810:CDS
CATGTATCATTCCCTGCTCA+AGG 0.589258 6_4:+21357033 Msa0981810:CDS
ATTGTCAACATGAAGAAGGA+AGG 0.589842 6_4:+21357142 Msa0981810:CDS
GGTGTGAGGTCAGACATTGA+TGG 0.590788 6_4:+21356314 Msa0981810:CDS
GGCTGATAAAGAAGTGGATG+GGG 0.590962 6_4:+21357066 Msa0981810:CDS
ATGTTTGGAAAATTAGCGAA+CGG 0.591389 6_4:-21357805 None:intergenic
TCAAACATGAAACAAGGAGA+GGG 0.594065 6_4:+21357461 Msa0981810:three_prime_UTR
CATCACGGTCTCAACTCTCA+AGG 0.594521 6_4:+21357555 Msa0981810:three_prime_UTR
TTCATCTCATTAAACACACC+AGG 0.595754 6_4:-21356236 None:intergenic
CTGATTACGGAGTAGAGACT+CGG 0.598422 6_4:-21355504 None:intergenic
CTCGATGATTGGATCTACAA+GGG 0.600333 6_4:+21355564 Msa0981810:CDS
GAGTCAACCACACATTGTGA+TGG 0.604951 6_4:+21356364 Msa0981810:CDS
CTTTACCAGAGATTCTAACA+TGG 0.608963 6_4:-21356615 None:intergenic
CTCTGAGGAAATGTGAGAAG+AGG 0.609275 6_4:+21356456 Msa0981810:CDS
AAGGGGAACAAGGTCAGTGT+TGG 0.610109 6_4:+21355582 Msa0981810:CDS
AAAAGCAGAACTTTCAAGTG+AGG 0.615457 6_4:+21356424 Msa0981810:CDS
TGAAGCTGACAAAATACTCA+AGG 0.617626 6_4:+21356652 Msa0981810:CDS
TCTGAGTGGATGAATAAGAA+TGG 0.619392 6_4:+21355933 Msa0981810:CDS
ATGTGCAGCTGGTGATTCGT+TGG 0.621188 6_4:+21357525 Msa0981810:three_prime_UTR
TTGCAAGAGGTGCCTAAACA+GGG 0.623797 6_4:+21356583 Msa0981810:CDS
ACAGTGAGGAGACGGAAGGA+TGG 0.624382 6_4:-21357349 None:intergenic
GCTGGATGACAAAGATGGAG+AGG 0.630483 6_4:+21356478 Msa0981810:CDS
TGTACGGGCTGATAAAGAAG+TGG 0.630662 6_4:+21357060 Msa0981810:CDS
TTGGATCTACAAGGGGAACA+AGG 0.631123 6_4:+21355572 Msa0981810:CDS
CTGGATGACAAAGATGGAGA+GGG 0.639684 6_4:+21356479 Msa0981810:CDS
GTATAGGTTCTTATGGTGTG+AGG 0.642898 6_4:+21356300 Msa0981810:CDS
TACTCCGTAATCAGTCCACT+CGG 0.648943 6_4:+21355513 Msa0981810:CDS
ACATGAAACAAGGAGAGGGG+TGG 0.651939 6_4:+21357465 Msa0981810:three_prime_UTR
ATAAATGTGGTTTCACAGTG+AGG 0.653220 6_4:-21357363 None:intergenic
ATGGAAGAAGGGAAAGTACA+CGG 0.654095 6_4:+21356784 Msa0981810:CDS
CCAGCTGCACATTGCCACTG+TGG 0.654575 6_4:-21357514 None:intergenic
AAGATGCAGAAGCTTTGGTG+AGG 0.660017 6_4:+21356981 Msa0981810:CDS
TTCCAGTCCATCACAATGTG+TGG 0.661687 6_4:-21356371 None:intergenic
TCGATGATTGGATCTACAAG+GGG 0.673371 6_4:+21355565 Msa0981810:CDS
CCGTACATAAGCCTTGAGCA+GGG 0.673451 6_4:-21357044 None:intergenic
GTGAGGCAATTGATGCTCTG+AGG 0.674408 6_4:+21356441 Msa0981810:CDS
CTGGAACACGTATTCTGTCG+CGG 0.674669 6_4:+21356388 Msa0981810:CDS
TAGATCCAATCATCGAGCTG+AGG 0.675401 6_4:-21355558 None:intergenic
GAGCTGAGGAGCAACACTAG+TGG 0.679825 6_4:-21355544 None:intergenic
AGATAAACCCTAGCTAGCTG+CGG 0.681544 6_4:+21355386 Msa0981810:five_prime_UTR
TTAGTATCAAACATGAAACA+AGG 0.683597 6_4:+21357455 Msa0981810:three_prime_UTR
AAGACTTGTTGCTGCCACAG+TGG 0.696755 6_4:+21357500 Msa0981810:three_prime_UTR
TTTCACAGTGAGGAGACGGA+AGG 0.709322 6_4:-21357353 None:intergenic
GTGAGATGGAGAAAGCATTG+GGG 0.709613 6_4:+21356852 Msa0981810:CDS
CAAACATGAAACAAGGAGAG+GGG 0.719556 6_4:+21357462 Msa0981810:three_prime_UTR
GAAAGAAATGAGAAGACACA+CGG 0.720582 6_4:+21356062 Msa0981810:CDS
CTAGTGGTTTGATTACCGAG+TGG 0.725864 6_4:-21355528 None:intergenic
AATGGGTGCAGGTATCTGAG+TGG 0.734932 6_4:+21355919 Msa0981810:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACTTTATTGCTTAATAA+TGG + chr6_4:21355901-21355920 Msa0981810:intron 15.0%
!! TAACTTTATTGCTTAATAAT+GGG + chr6_4:21355902-21355921 Msa0981810:intron 15.0%
!!! ACACTTATTTTAATCTGATT+TGG + chr6_4:21355868-21355887 Msa0981810:intron 20.0%
!!! TTCTGCTTTTATATAGAAAT+TGG - chr6_4:21356414-21356433 None:intergenic 20.0%
!!! TGATTTCTAGTATATATAGT+TGG + chr6_4:21356936-21356955 Msa0981810:CDS 20.0%
!!! ATGAAAAAGTCATTAATTTG+AGG - chr6_4:21357262-21357281 None:intergenic 20.0%
!!! TCAAATTAATGACTTTTTCA+TGG + chr6_4:21357261-21357280 Msa0981810:three_prime_UTR 20.0%
!! GTTTAGATTTGAATAAGTTA+TGG + chr6_4:21357676-21357695 Msa0981810:three_prime_UTR 20.0%
! TTTATCTTTCTACTCTGTTT+CGG - chr6_4:21355373-21355392 None:intergenic 25.0%
! ATTAAGAGAAATTGAAAACC+TGG - chr6_4:21355665-21355684 None:intergenic 25.0%
! AGCTGTTTATTTATCTAAAC+AGG + chr6_4:21355798-21355817 Msa0981810:intron 25.0%
! GCTGTTTATTTATCTAAACA+GGG + chr6_4:21355799-21355818 Msa0981810:intron 25.0%
!!! AACCTATTTTAATAGCTTGA+AGG + chr6_4:21356034-21356053 Msa0981810:CDS 25.0%
! ATCCTTCAAGCTATTAAAAT+AGG - chr6_4:21356039-21356058 None:intergenic 25.0%
! TGTATCCGGAAAATAAAAAA+CGG + chr6_4:21356897-21356916 Msa0981810:CDS 25.0%
! TCTAGTATATATAGTTGGAT+TGG + chr6_4:21356941-21356960 Msa0981810:CDS 25.0%
! TCAGTTTCACATTATATTCT+TGG + chr6_4:21357182-21357201 Msa0981810:three_prime_UTR 25.0%
! CAGTTTCACATTATATTCTT+GGG + chr6_4:21357183-21357202 Msa0981810:three_prime_UTR 25.0%
! TTAGTATCAAACATGAAACA+AGG + chr6_4:21357455-21357474 Msa0981810:three_prime_UTR 25.0%
! CACAAATCATCACTATTATT+GGG - chr6_4:21357609-21357628 None:intergenic 25.0%
!! TTTTCCCTAAATTTAATTGC+TGG + chr6_4:21357701-21357720 Msa0981810:three_prime_UTR 25.0%
TAACGATTCTCAGAAAGAAA+TGG - chr6_4:21355347-21355366 None:intergenic 30.0%
ATCCCATTTGAAGAAAATGA+AGG + chr6_4:21356133-21356152 Msa0981810:CDS 30.0%
! CTCCTTCATTTTCTTCAAAT+GGG - chr6_4:21356138-21356157 None:intergenic 30.0%
! ACTCCTTCATTTTCTTCAAA+TGG - chr6_4:21356139-21356158 None:intergenic 30.0%
TTTGAAGAAAATGAAGGAGT+TGG + chr6_4:21356139-21356158 Msa0981810:CDS 30.0%
TTGAAGAAAATGAAGGAGTT+GGG + chr6_4:21356140-21356159 Msa0981810:CDS 30.0%
ATGTGTCTATACACGAATAT+AGG + chr6_4:21356197-21356216 Msa0981810:CDS 30.0%
TTTAGCTACAGAATCTGTAT+AGG + chr6_4:21356284-21356303 Msa0981810:CDS 30.0%
AGAATCTGTATAGGTTCTTA+TGG + chr6_4:21356293-21356312 Msa0981810:CDS 30.0%
GAAGACTATATTGAAAGAGA+TGG + chr6_4:21356340-21356359 Msa0981810:CDS 30.0%
TTTCCATATCCCATATTCTT+AGG - chr6_4:21356556-21356575 None:intergenic 30.0%
TGACAAAATACTCAAGGAAT+GGG + chr6_4:21356658-21356677 Msa0981810:CDS 30.0%
! TCTGGTAACTGTTATGATTT+TGG + chr6_4:21356686-21356705 Msa0981810:CDS 30.0%
CTTCAAGATATATGGAAGAA+GGG + chr6_4:21356773-21356792 Msa0981810:CDS 30.0%
ATATACTAGAAATCACCCTA+TGG - chr6_4:21356931-21356950 None:intergenic 30.0%
! GATACATGTGTCTATTCTTT+TGG - chr6_4:21357021-21357040 None:intergenic 30.0%
CAATGTTATCTTCTTTCATG+CGG - chr6_4:21357099-21357118 None:intergenic 30.0%
AGAAATTGTCAACATGAAGA+AGG + chr6_4:21357138-21357157 Msa0981810:CDS 30.0%
TTTCACATTATATTCTTGGG+TGG + chr6_4:21357186-21357205 Msa0981810:three_prime_UTR 30.0%
!! TGGTTGATAAAAGAGTTCTT+AGG - chr6_4:21357308-21357327 None:intergenic 30.0%
TGTTGCGACATTAATAAATG+TGG - chr6_4:21357379-21357398 None:intergenic 30.0%
! TCTAATTTTCCAGGTTTGTA+GGG - chr6_4:21357414-21357433 None:intergenic 30.0%
GCACAAATCATCACTATTAT+TGG - chr6_4:21357610-21357629 None:intergenic 30.0%
AAACAGTGCTTGACATTAAT+CGG - chr6_4:21357660-21357679 None:intergenic 30.0%
TGGTCCAGCAATTAAATTTA+GGG - chr6_4:21357708-21357727 None:intergenic 30.0%
ATGGTCCAGCAATTAAATTT+AGG - chr6_4:21357709-21357728 None:intergenic 30.0%
AAATTTAATTGCTGGACCAT+TGG + chr6_4:21357709-21357728 Msa0981810:three_prime_UTR 30.0%
! GAACAAGAGTTTTTATTGTG+AGG - chr6_4:21357748-21357767 None:intergenic 30.0%
ATGTTTGGAAAATTAGCGAA+CGG - chr6_4:21357808-21357827 None:intergenic 30.0%
! GGATACTTTTACTGAATGTT+TGG - chr6_4:21357823-21357842 None:intergenic 30.0%
!! TATTGCTTAATAATGGGTGC+AGG + chr6_4:21355908-21355927 Msa0981810:intron 35.0%
TCTGAGTGGATGAATAAGAA+TGG + chr6_4:21355933-21355952 Msa0981810:CDS 35.0%
TGCATTTGGATCTTATTGGA+AGG + chr6_4:21355988-21356007 Msa0981810:CDS 35.0%
GCATTTGGATCTTATTGGAA+GGG + chr6_4:21355989-21356008 Msa0981810:CDS 35.0%
GAAAGAAATGAGAAGACACA+CGG + chr6_4:21356062-21356081 Msa0981810:CDS 35.0%
TGAAGAAAATGAAGGAGTTG+GGG + chr6_4:21356141-21356160 Msa0981810:CDS 35.0%
TTCATCTCATTAAACACACC+AGG - chr6_4:21356239-21356258 None:intergenic 35.0%
TGGTGTGTTTAATGAGATGA+AGG + chr6_4:21356238-21356257 Msa0981810:CDS 35.0%
ATTCTGTAGCTAAAGTTGTC+CGG - chr6_4:21356278-21356297 None:intergenic 35.0%
! AAAAGCAGAACTTTCAAGTG+AGG + chr6_4:21356424-21356443 Msa0981810:CDS 35.0%
TCGTCTTGGAAAAAAGAATG+AGG + chr6_4:21356529-21356548 Msa0981810:CDS 35.0%
AGAATGAGGTCCTAAGAATA+TGG + chr6_4:21356543-21356562 Msa0981810:CDS 35.0%
GAATGAGGTCCTAAGAATAT+GGG + chr6_4:21356544-21356563 Msa0981810:CDS 35.0%
TGGTTATGAAATCCCTGTTT+AGG - chr6_4:21356598-21356617 None:intergenic 35.0%
CATAACCATGTTAGAATCTC+TGG + chr6_4:21356610-21356629 Msa0981810:CDS 35.0%
CTTTACCAGAGATTCTAACA+TGG - chr6_4:21356618-21356637 None:intergenic 35.0%
TGAAGCTGACAAAATACTCA+AGG + chr6_4:21356652-21356671 Msa0981810:CDS 35.0%
CTGACAAAATACTCAAGGAA+TGG + chr6_4:21356657-21356676 Msa0981810:CDS 35.0%
!!! TGATTTTGGAGTTCCAAATG+TGG + chr6_4:21356700-21356719 Msa0981810:CDS 35.0%
AAGCCATGCTTCAAGATATA+TGG + chr6_4:21356765-21356784 Msa0981810:CDS 35.0%
CTTCCATATATCTTGAAGCA+TGG - chr6_4:21356771-21356790 None:intergenic 35.0%
GCTTCAAGATATATGGAAGA+AGG + chr6_4:21356772-21356791 Msa0981810:CDS 35.0%
ATACTTGCTTAAAGGTGAGA+TGG + chr6_4:21356838-21356857 Msa0981810:CDS 35.0%
! ATTTTCCGGATACAAACAGA+CGG - chr6_4:21356891-21356910 None:intergenic 35.0%
!!! GGCTTCCGTTTTTTATTTTC+CGG - chr6_4:21356905-21356924 None:intergenic 35.0%
GAAGATAACATTGACGAAAC+CGG + chr6_4:21357106-21357125 Msa0981810:CDS 35.0%
! GACAATTTCTGCAGTTTTTC+CGG - chr6_4:21357128-21357147 None:intergenic 35.0%
ATTGTCAACATGAAGAAGGA+AGG + chr6_4:21357142-21357161 Msa0981810:CDS 35.0%
TGCAAGACTCATTTATGTCT+CGG + chr6_4:21357218-21357237 Msa0981810:three_prime_UTR 35.0%
AAAGAGTTCTTAGGTGAGTA+AGG - chr6_4:21357299-21357318 None:intergenic 35.0%
ATAAATGTGGTTTCACAGTG+AGG - chr6_4:21357366-21357385 None:intergenic 35.0%
! CTCTAATTTTCCAGGTTTGT+AGG - chr6_4:21357415-21357434 None:intergenic 35.0%
! TTTTGTCGCTCTAATTTTCC+AGG - chr6_4:21357423-21357442 None:intergenic 35.0%
GGAAAATTAGAGCGACAAAA+AGG + chr6_4:21357423-21357442 Msa0981810:three_prime_UTR 35.0%
ATCAAACATGAAACAAGGAG+AGG + chr6_4:21357460-21357479 Msa0981810:three_prime_UTR 35.0%
TCAAACATGAAACAAGGAGA+GGG + chr6_4:21357461-21357480 Msa0981810:three_prime_UTR 35.0%
TGCAGAGAAGAATTAGACAT+TGG + chr6_4:21357627-21357646 Msa0981810:three_prime_UTR 35.0%
TGTTTGGAAAATTAGCGAAC+GGG - chr6_4:21357807-21357826 None:intergenic 35.0%
AAGCTTCCAATTCATGGCTA+TGG - chr6_4:21355415-21355434 None:intergenic 40.0%
TCGAAGAAGCTTCCAATTCA+TGG - chr6_4:21355421-21355440 None:intergenic 40.0%
!! GTTGTTTCTGCTTCCAATGT+TGG - chr6_4:21355454-21355473 None:intergenic 40.0%
!! ATTACCGAGTGGACTGATTA+CGG - chr6_4:21355520-21355539 None:intergenic 40.0%
CTCGATGATTGGATCTACAA+GGG + chr6_4:21355564-21355583 Msa0981810:CDS 40.0%
TCGATGATTGGATCTACAAG+GGG + chr6_4:21355565-21355584 Msa0981810:CDS 40.0%
! ATTTTCTCCAGTTGAACACG+CGG + chr6_4:21355965-21355984 Msa0981810:CDS 40.0%
GATCTTATTGGAAGGGTTCA+TGG + chr6_4:21355996-21356015 Msa0981810:CDS 40.0%
! GAAGGAAAACCATGTTTTGC+CGG + chr6_4:21356256-21356275 Msa0981810:CDS 40.0%
TAAAGTTGTCCGGCAAAACA+TGG - chr6_4:21356268-21356287 None:intergenic 40.0%
GTATAGGTTCTTATGGTGTG+AGG + chr6_4:21356300-21356319 Msa0981810:CDS 40.0%
GAGCGTAAAGAGAGATAAGA+TGG - chr6_4:21356511-21356530 None:intergenic 40.0%
GGTCCTAAGAATATGGGATA+TGG + chr6_4:21356550-21356569 Msa0981810:CDS 40.0%
!! TGGAAAAAAGTGCTTGCAAG+AGG + chr6_4:21356570-21356589 Msa0981810:CDS 40.0%
AGAATCTCTGGTAAAGCTTG+AGG + chr6_4:21356622-21356641 Msa0981810:CDS 40.0%
TTCCAAATGTGGTAGTCGTT+GGG + chr6_4:21356711-21356730 Msa0981810:CDS 40.0%
! ATGGAAGAAGGGAAAGTACA+CGG + chr6_4:21356784-21356803 Msa0981810:CDS 40.0%
AGTACACGGATACAAACTCT+TGG + chr6_4:21356798-21356817 Msa0981810:CDS 40.0%
GCAGATCGATACTTGCTTAA+AGG + chr6_4:21356830-21356849 Msa0981810:CDS 40.0%
AAAAACGGAAGCCAAACCAT+AGG + chr6_4:21356912-21356931 Msa0981810:CDS 40.0%
AAAACGGAAGCCAAACCATA+GGG + chr6_4:21356913-21356932 Msa0981810:CDS 40.0%
CTAGAAATCACCCTATGGTT+TGG - chr6_4:21356926-21356945 None:intergenic 40.0%
TGTTGAAGATGCAGAAGCTT+TGG + chr6_4:21356976-21356995 Msa0981810:CDS 40.0%
TTATATTCTTGGGTGGCTTC+TGG + chr6_4:21357193-21357212 Msa0981810:three_prime_UTR 40.0%
ATGGTCGCAGTATAGAAGTT+GGG - chr6_4:21357333-21357352 None:intergenic 40.0%
CAAACATGAAACAAGGAGAG+GGG + chr6_4:21357462-21357481 Msa0981810:three_prime_UTR 40.0%
TCATCACTATTATTGGGAGC+TGG - chr6_4:21357603-21357622 None:intergenic 40.0%
! AGGCAAACATTTGCTACCAA+TGG - chr6_4:21357728-21357747 None:intergenic 40.0%
!!! CGAACGGGACTTTTAAGATT+TGG - chr6_4:21357792-21357811 None:intergenic 40.0%
AGATAAACCCTAGCTAGCTG+CGG + chr6_4:21355386-21355405 Msa0981810:five_prime_UTR 45.0%
!! CGAAGCATTGCAACCAACAT+TGG + chr6_4:21355438-21355457 Msa0981810:CDS 45.0%
CTGATTACGGAGTAGAGACT+CGG - chr6_4:21355507-21355526 None:intergenic 45.0%
TACTCCGTAATCAGTCCACT+CGG + chr6_4:21355513-21355532 Msa0981810:CDS 45.0%
CTAGTGGTTTGATTACCGAG+TGG - chr6_4:21355531-21355550 None:intergenic 45.0%
TAGATCCAATCATCGAGCTG+AGG - chr6_4:21355561-21355580 None:intergenic 45.0%
GCTCGATGATTGGATCTACA+AGG + chr6_4:21355563-21355582 Msa0981810:CDS 45.0%
TTGGATCTACAAGGGGAACA+AGG + chr6_4:21355572-21355591 Msa0981810:CDS 45.0%
TAGATTCACACAAGCTCTCC+AGG + chr6_4:21355644-21355663 Msa0981810:CDS 45.0%
GCGGTGCATTTGGATCTTAT+TGG + chr6_4:21355984-21356003 Msa0981810:CDS 45.0%
GAGTCAACCACACATTGTGA+TGG + chr6_4:21356364-21356383 Msa0981810:CDS 45.0%
!! AACCACACATTGTGATGGAC+TGG + chr6_4:21356369-21356388 Msa0981810:CDS 45.0%
TTCCAGTCCATCACAATGTG+TGG - chr6_4:21356374-21356393 None:intergenic 45.0%
! CTCTGAGGAAATGTGAGAAG+AGG + chr6_4:21356456-21356475 Msa0981810:CDS 45.0%
AAGAGGCTGGATGACAAAGA+TGG + chr6_4:21356473-21356492 Msa0981810:CDS 45.0%
CTGGATGACAAAGATGGAGA+GGG + chr6_4:21356479-21356498 Msa0981810:CDS 45.0%
ATCTCTCTTTACGCTCGTCT+TGG + chr6_4:21356515-21356534 Msa0981810:CDS 45.0%
!! TTGCAAGAGGTGCCTAAACA+GGG + chr6_4:21356583-21356602 Msa0981810:CDS 45.0%
CTCAAGGAATGGGAATTCTC+TGG + chr6_4:21356668-21356687 Msa0981810:CDS 45.0%
GTTCCAAATGTGGTAGTCGT+TGG + chr6_4:21356710-21356729 Msa0981810:CDS 45.0%
TACCCAACGACTACCACATT+TGG - chr6_4:21356716-21356735 None:intergenic 45.0%
AAGCATGGCTTCTGCTTTCT+CGG - chr6_4:21356756-21356775 None:intergenic 45.0%
! AGGTGAGATGGAGAAAGCAT+TGG + chr6_4:21356850-21356869 Msa0981810:CDS 45.0%
!! GGTGAGATGGAGAAAGCATT+GGG + chr6_4:21356851-21356870 Msa0981810:CDS 45.0%
!! GTGAGATGGAGAAAGCATTG+GGG + chr6_4:21356852-21356871 Msa0981810:CDS 45.0%
AACTGCCGTCTGTTTGTATC+CGG + chr6_4:21356883-21356902 Msa0981810:CDS 45.0%
! AAGATGCAGAAGCTTTGGTG+AGG + chr6_4:21356981-21357000 Msa0981810:CDS 45.0%
CATGTATCATTCCCTGCTCA+AGG + chr6_4:21357033-21357052 Msa0981810:CDS 45.0%
! TGTACGGGCTGATAAAGAAG+TGG + chr6_4:21357060-21357079 Msa0981810:CDS 45.0%
GGGCTGATAAAGAAGTGGAT+GGG + chr6_4:21357065-21357084 Msa0981810:CDS 45.0%
GGCTGATAAAGAAGTGGATG+GGG + chr6_4:21357066-21357085 Msa0981810:CDS 45.0%
TAAAGAAGTGGATGGGGTCT+TGG + chr6_4:21357072-21357091 Msa0981810:CDS 45.0%
CGCAGTATAGAAGTTGGGTT+TGG - chr6_4:21357328-21357347 None:intergenic 45.0%
GATGGTCGCAGTATAGAAGT+TGG - chr6_4:21357334-21357353 None:intergenic 45.0%
TTAGAGCGACAAAAAGGCAG+AGG + chr6_4:21357429-21357448 Msa0981810:three_prime_UTR 45.0%
TTCGTTGGCAATTGGCATCA+CGG + chr6_4:21357540-21357559 Msa0981810:three_prime_UTR 45.0%
TCAAGGCTATAGCACCTCTA+TGG + chr6_4:21357572-21357591 Msa0981810:three_prime_UTR 45.0%
CGGTAGCCATAGCCATGAAT+TGG + chr6_4:21355406-21355425 Msa0981810:exon 50.0%
!! ACTCGGTTTCTTGGTCTTGC+TGG - chr6_4:21355490-21355509 None:intergenic 50.0%
! GGAGTAGAGACTCGGTTTCT+TGG - chr6_4:21355499-21355518 None:intergenic 50.0%
TTGCTCCTCAGCTCGATGAT+TGG + chr6_4:21355553-21355572 Msa0981810:CDS 50.0%
AAGGGGAACAAGGTCAGTGT+TGG + chr6_4:21355582-21355601 Msa0981810:CDS 50.0%
AATGGGTGCAGGTATCTGAG+TGG + chr6_4:21355919-21355938 Msa0981810:intron 50.0%
AAATGCACCGCGTGTTCAAC+TGG - chr6_4:21355975-21355994 None:intergenic 50.0%
AGTTGAACACGCGGTGCATT+TGG + chr6_4:21355974-21355993 Msa0981810:CDS 50.0%
GGACAGCATGAGAAAGTTCC+TGG + chr6_4:21356218-21356237 Msa0981810:CDS 50.0%
GGTGTGAGGTCAGACATTGA+TGG + chr6_4:21356314-21356333 Msa0981810:CDS 50.0%
CTGGAACACGTATTCTGTCG+CGG + chr6_4:21356388-21356407 Msa0981810:CDS 50.0%
GTGAGGCAATTGATGCTCTG+AGG + chr6_4:21356441-21356460 Msa0981810:CDS 50.0%
GAGGAAATGTGAGAAGAGGC+TGG + chr6_4:21356460-21356479 Msa0981810:CDS 50.0%
GCTGGATGACAAAGATGGAG+AGG + chr6_4:21356478-21356497 Msa0981810:CDS 50.0%
!! CTTGCAAGAGGTGCCTAAAC+AGG + chr6_4:21356582-21356601 Msa0981810:CDS 50.0%
AGCATGGCTTCTGCTTTCTC+GGG - chr6_4:21356755-21356774 None:intergenic 50.0%
CCGTACATAAGCCTTGAGCA+GGG - chr6_4:21357047-21357066 None:intergenic 50.0%
CCCTGCTCAAGGCTTATGTA+CGG + chr6_4:21357044-21357063 Msa0981810:CDS 50.0%
CCTGCTCAAGGCTTATGTAC+GGG + chr6_4:21357045-21357064 Msa0981810:CDS 50.0%
CGGGCTGATAAAGAAGTGGA+TGG + chr6_4:21357064-21357083 Msa0981810:CDS 50.0%
TTTCACAGTGAGGAGACGGA+AGG - chr6_4:21357356-21357375 None:intergenic 50.0%
GTGGTTTCACAGTGAGGAGA+CGG - chr6_4:21357360-21357379 None:intergenic 50.0%
ACATGAAACAAGGAGAGGGG+TGG + chr6_4:21357465-21357484 Msa0981810:three_prime_UTR 50.0%
!! AAGACTTGTTGCTGCCACAG+TGG + chr6_4:21357500-21357519 Msa0981810:three_prime_UTR 50.0%
ATGTGCAGCTGGTGATTCGT+TGG + chr6_4:21357525-21357544 Msa0981810:three_prime_UTR 50.0%
GCTGGTGATTCGTTGGCAAT+TGG + chr6_4:21357532-21357551 Msa0981810:three_prime_UTR 50.0%
CATCACGGTCTCAACTCTCA+AGG + chr6_4:21357555-21357574 Msa0981810:three_prime_UTR 50.0%
ATGGCTACCGCAGCTAGCTA+GGG - chr6_4:21355396-21355415 None:intergenic 55.0%
TATGGCTACCGCAGCTAGCT+AGG - chr6_4:21355397-21355416 None:intergenic 55.0%
GAGCTGAGGAGCAACACTAG+TGG - chr6_4:21355547-21355566 None:intergenic 55.0%
CCCGTACATAAGCCTTGAGC+AGG - chr6_4:21357048-21357067 None:intergenic 55.0%
ACAGTGAGGAGACGGAAGGA+TGG - chr6_4:21357352-21357371 None:intergenic 55.0%
TGCAGCAAGCCCTACAAACC+TGG + chr6_4:21357402-21357421 Msa0981810:three_prime_UTR 55.0%
ACAAGGAGAGGGGTGGAGAG+AGG + chr6_4:21357472-21357491 Msa0981810:three_prime_UTR 60.0%
CAAGGAGAGGGGTGGAGAGA+GGG + chr6_4:21357473-21357492 Msa0981810:three_prime_UTR 60.0%
AAGGAGAGGGGTGGAGAGAG+GGG + chr6_4:21357474-21357493 Msa0981810:three_prime_UTR 60.0%
CCAGCTGCACATTGCCACTG+TGG - chr6_4:21357517-21357536 None:intergenic 60.0%
CCACAGTGGCAATGTGCAGC+TGG + chr6_4:21357514-21357533 Msa0981810:three_prime_UTR 60.0%
GGGAGCTGGTAGAGCCATAG+AGG - chr6_4:21357589-21357608 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 21355336 21357857 21355336 ID=Msa0981810;Name=Msa0981810
chr6_4 mRNA 21355336 21357857 21355336 ID=Msa0981810-mRNA-1;Parent=Msa0981810;Name=Msa0981810-mRNA-1;_AED=0.00;_eAED=0.00;_QI=84|1|1|1|1|1|2|683|496
chr6_4 exon 21355336 21355665 21355336 ID=Msa0981810-mRNA-1:exon:6535;Parent=Msa0981810-mRNA-1
chr6_4 exon 21355930 21357857 21355930 ID=Msa0981810-mRNA-1:exon:6536;Parent=Msa0981810-mRNA-1
chr6_4 five_prime_UTR 21355336 21355419 21355336 ID=Msa0981810-mRNA-1:five_prime_utr;Parent=Msa0981810-mRNA-1
chr6_4 CDS 21355420 21355665 21355420 ID=Msa0981810-mRNA-1:cds;Parent=Msa0981810-mRNA-1
chr6_4 CDS 21355930 21357174 21355930 ID=Msa0981810-mRNA-1:cds;Parent=Msa0981810-mRNA-1
chr6_4 three_prime_UTR 21357175 21357857 21357175 ID=Msa0981810-mRNA-1:three_prime_utr;Parent=Msa0981810-mRNA-1
Gene Sequence

>Msa0981810

ATGAATTGGAAGCTTCTTCGAAGCATTGCAACCAACATTGGAAGCAGAAACAACAGATCATACTACACCAGCAAGACCAAGAAACCGAGTCTCTACTCCGTAATCAGTCCACTCGGTAATCAAACCACTAGTGTTGCTCCTCAGCTCGATGATTGGATCTACAAGGGGAACAAGGTCAGTGTTGGTGAGCTTCAGCGCATTGTTCGTGATCTTCGCAAGCGTAGTAGATTCACACAAGCTCTCCAGGTATCTGAGTGGATGAATAAGAATGGTGTGTGCATATTTTCTCCAGTTGAACACGCGGTGCATTTGGATCTTATTGGAAGGGTTCATGGTTTTTATGCTGCAGAAACCTATTTTAATAGCTTGAAGGATATAGAAAGAAATGAGAAGACACACGGTGCTCTTTTGAATTGCTATGTACGTCAGCGTCAAGTCGATAAGTCTCTATCCCATTTGAAGAAAATGAAGGAGTTGGGGTTTGCTTTGTCGTCTCTAACTTATAACAACATTATGTGTCTATACACGAATATAGGACAGCATGAGAAAGTTCCTGGTGTGTTTAATGAGATGAAGGAAAACCATGTTTTGCCGGACAACTTTAGCTACAGAATCTGTATAGGTTCTTATGGTGTGAGGTCAGACATTGATGGAATGAAGACTATATTGAAAGAGATGGAGAGTCAACCACACATTGTGATGGACTGGAACACGTATTCTGTCGCGGCCAATTTCTATATAAAAGCAGAACTTTCAAGTGAGGCAATTGATGCTCTGAGGAAATGTGAGAAGAGGCTGGATGACAAAGATGGAGAGGGTTACAACCATCTTATCTCTCTTTACGCTCGTCTTGGAAAAAAGAATGAGGTCCTAAGAATATGGGATATGGAAAAAAGTGCTTGCAAGAGGTGCCTAAACAGGGATTTCATAACCATGTTAGAATCTCTGGTAAAGCTTGAGGAGTTTGATGAAGCTGACAAAATACTCAAGGAATGGGAATTCTCTGGTAACTGTTATGATTTTGGAGTTCCAAATGTGGTAGTCGTTGGGTACTCTGAAAAAGATTTTCCCGAGAAAGCAGAAGCCATGCTTCAAGATATATGGAAGAAGGGAAAGTACACGGATACAAACTCTTGGATTCTAGTCGCAGATCGATACTTGCTTAAAGGTGAGATGGAGAAAGCATTGGGGTGCTTGAAAACTGCCGTCTGTTTGTATCCGGAAAATAAAAAACGGAAGCCAAACCATAGGGTGATTTCTAGTATATATAGTTGGATTGGTGATAATGCTTCTGTTGAAGATGCAGAAGCTTTGGTGAGGTTATTGAAAAAATTCCAAAAGAATAGACACATGTATCATTCCCTGCTCAAGGCTTATGTACGGGCTGATAAAGAAGTGGATGGGGTCTTGGACCGCATGAAAGAAGATAACATTGACGAAACCGGAAAAACTGCAGAAATTGTCAACATGAAGAAGGAAGGAAATTTGTAA
Protein sequence

>Msa0981810

MNWKLLRSIATNIGSRNNRSYYTSKTKKPSLYSVISPLGNQTTSVAPQLDDWIYKGNKVSVGELQRIVRDLRKRSRFTQALQVSEWMNKNGVCIFSPVEHAVHLDLIGRVHGFYAAETYFNSLKDIERNEKTHGALLNCYVRQRQVDKSLSHLKKMKELGFALSSLTYNNIMCLYTNIGQHEKVPGVFNEMKENHVLPDNFSYRICIGSYGVRSDIDGMKTILKEMESQPHIVMDWNTYSVAANFYIKAELSSEAIDALRKCEKRLDDKDGEGYNHLISLYARLGKKNEVLRIWDMEKSACKRCLNRDFITMLESLVKLEEFDEADKILKEWEFSGNCYDFGVPNVVVVGYSEKDFPEKAEAMLQDIWKKGKYTDTNSWILVADRYLLKGEMEKALGCLKTAVCLYPENKKRKPNHRVISSIYSWIGDNASVEDAEALVRLLKKFQKNRHMYHSLLKAYVRADKEVDGVLDRMKEDNIDETGKTAEIVNMKKEGNL*