AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0122970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122970 MtrunA17_Chr1g0183311 88.123 943 59 2 1 943 1 890 0.0 1628
Msa0122970 MtrunA17_Chr1g0211711 74.371 835 114 7 119 943 315 1059 0.0 1247
Msa0122970 MtrunA17_Chr5g0426961 63.647 850 187 9 99 936 97 836 0.0 1034
Msa0122970 MtrunA17_Chr1g0211691 68.079 755 177 9 43 773 239 953 0.0 999
Msa0122970 MtrunA17_Chr1g0211661 64.209 746 169 6 130 875 218 865 0.0 948
Msa0122970 MtrunA17_Chr5g0420361 64.006 714 181 10 207 916 138 779 0.0 883
Msa0122970 MtrunA17_Chr6g0472441 60.165 728 187 12 207 928 80 710 0.0 828
Msa0122970 MtrunA17_Chr7g0275771 40.415 965 420 26 65 941 36 933 0.0 640
Msa0122970 MtrunA17_Chr5g0448301 54.634 615 165 5 233 845 129 631 0.0 624
Msa0122970 MtrunA17_Chr4g0075261 44.000 800 334 16 144 932 168 864 0.0 615
Msa0122970 MtrunA17_Chr2g0289121 44.515 793 309 15 143 932 155 819 0.0 592
Msa0122970 MtrunA17_Chr1g0192011 35.448 804 396 22 144 933 267 961 1.74e-139 442
Msa0122970 MtrunA17_Chr1g0147021 45.506 534 254 11 140 669 866 1366 2.11e-131 434
Msa0122970 MtrunA17_Chr1g0147021 52.381 189 37 2 735 923 1551 1686 3.59e-50 193
Msa0122970 MtrunA17_Chr2g0289031 46.074 484 161 5 451 932 8 393 3.03e-130 398
Msa0122970 MtrunA17_Chr2g0281051 32.191 817 467 19 144 937 207 959 1.09e-114 375
Msa0122970 MtrunA17_Chr2g0281051 29.084 808 459 20 39 759 54 834 8.72e-79 276
Msa0122970 MtrunA17_Chr2g0289091 41.593 452 131 12 525 897 23 420 4.86e-89 290
Msa0122970 MtrunA17_Chr8g0364421 50.195 257 96 4 254 510 5 229 6.25e-70 231
Msa0122970 MtrunA17_Chr1g0211701 77.869 122 27 0 822 943 5 126 3.43e-64 213
Msa0122970 MtrunA17_Chr8g0340381 70.414 169 31 3 546 714 36 185 3.55e-61 206
Msa0122970 MtrunA17_Chr4g0048531 41.667 300 158 8 367 659 727 1016 1.71e-59 222
Msa0122970 MtrunA17_Chr4g0048531 40.000 200 66 2 734 933 1132 1277 1.68e-37 152
Msa0122970 MtrunA17_Chr4g0048531 33.014 209 122 5 139 338 255 454 1.35e-27 120
Msa0122970 MtrunA17_Chr7g0231061 61.585 164 63 0 512 675 12 175 4.01e-59 201
Msa0122970 MtrunA17_Chr8g0361381 51.337 187 87 1 447 633 26 208 6.16e-58 197
Msa0122970 MtrunA17_Chr2g0289041 41.038 212 115 4 166 376 2 204 6.09e-43 155
Msa0122970 MtrunA17_Chr8g0364411 50.350 143 65 2 113 255 8 144 3.89e-37 136
Msa0122970 MtrunA17_Chr8g0361391 48.936 141 18 2 735 875 51 137 6.69e-34 127
Msa0122970 MtrunA17_Chr1g0211671 77.419 62 14 0 874 935 15 76 1.94e-27 108
Msa0122970 MtrunA17_Chr3g0119761 62.338 77 29 0 619 695 55 131 2.02e-22 94.0
Msa0122970 MtrunA17_Chr2g0289101 38.095 147 81 5 276 418 8 148 2.99e-16 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0122970 AT3G07610.1 41.128 975 399 12 27 938 35 897 0.0 689
Msa0122970 AT3G07610.3 40.040 994 405 13 27 938 35 919 0.0 668
Msa0122970 AT1G11950.1 45.718 794 308 15 144 932 193 868 0.0 659
Msa0122970 AT1G11950.3 45.718 794 308 15 144 932 193 868 0.0 659
Msa0122970 AT1G62310.1 45.817 777 310 13 144 916 209 878 0.0 650
Msa0122970 AT4G00990.1 41.176 833 367 17 142 932 78 829 0.0 579
Msa0122970 AT1G11950.2 43.329 727 289 15 144 865 193 801 0.0 556
Msa0122970 AT4G00990.3 39.898 782 347 17 142 881 78 778 3.94e-169 513
Msa0122970 AT4G00990.2 40.181 774 340 17 142 873 78 770 6.06e-168 509
Msa0122970 AT3G07610.2 40.237 676 321 9 27 639 35 690 1.36e-152 469
Msa0122970 AT1G09060.2 30.135 813 418 18 144 933 206 891 5.24e-106 351
Msa0122970 AT1G09060.1 30.135 813 418 18 144 933 206 891 5.24e-106 351
Msa0122970 AT1G09060.4 30.135 813 418 18 144 933 220 905 9.73e-106 350
Msa0122970 AT1G09060.3 30.135 813 418 18 144 933 220 905 9.73e-106 350
Msa0122970 AT4G21430.1 28.241 648 395 12 140 773 223 814 2.19e-62 229
Msa0122970 AT4G21430.1 43.590 117 66 0 823 939 803 919 7.88e-26 115

Find 257 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGGTCATTGTTGGTTTC+TGG 0.066287 1_3:+49852423 None:intergenic
TTTAAATATTCTTCCAATTT+AGG 0.124269 1_3:+49849156 None:intergenic
AGTACATTGCTGACAATTAT+AGG 0.182829 1_3:+49851286 None:intergenic
TGATAAAGAAAATAGTTTAT+TGG 0.211724 1_3:-49849235 Msa0122970:CDS
TTGCTCGTATGAAGCCTTTA+TGG 0.217000 1_3:+49849332 None:intergenic
TCATACTCGTCTTTAATTTC+AGG 0.227847 1_3:-49854181 Msa0122970:five_prime_UTR
TCACAGCTTTAAACATAATA+AGG 0.229078 1_3:+49854143 None:intergenic
GCTATGGTTTCTTGATTATC+AGG 0.232645 1_3:+49853953 None:intergenic
AATTTGCACCAATTCTTTAC+TGG 0.236831 1_3:-49850339 Msa0122970:CDS
TTGTTATACATGACAGTCTT+TGG 0.248962 1_3:-49848667 Msa0122970:CDS
TGTTTGTAGTGTTTGAAAAT+TGG 0.263463 1_3:+49854070 None:intergenic
GAGAGAGGATGTACCTAAAT+TGG 0.270507 1_3:-49849169 Msa0122970:CDS
GTCCTTATTGGTCTGTAATA+AGG 0.273383 1_3:-49853500 Msa0122970:CDS
TCTGCAGACTTGTGATTTAC+TGG 0.286546 1_3:+49847535 None:intergenic
TTTCTGCCACGTTTCTTTGC+CGG 0.291268 1_3:+49853893 None:intergenic
AGTGTTCGATTTGTGGAAAA+TGG 0.293306 1_3:-49849306 Msa0122970:CDS
TGAAGTGAAGCTGGATTCTA+AGG 0.294563 1_3:-49849472 Msa0122970:CDS
ACAGCATCCTGGACATTTCT+TGG 0.294851 1_3:+49852592 None:intergenic
GATTGAAGATGTGTCCTTAT+TGG 0.294904 1_3:-49853512 Msa0122970:CDS
TCACAATCATCATCGGCTTT+TGG 0.295247 1_3:+49851598 None:intergenic
CTTCGTGGTGGGAAGCTTCT+AGG 0.295572 1_3:-49851796 Msa0122970:CDS
CTCGCCTGGACTGGCTTAAT+TGG 0.302310 1_3:-49850305 Msa0122970:CDS
AAAGTTTATAACGTTATTAT+CGG 0.305847 1_3:-49854224 Msa0122970:five_prime_UTR
CAGTCTTTGGGTCAGGGATA+TGG 0.306182 1_3:-49848654 Msa0122970:CDS
TGTTGCTGTTCAATGCATTC+AGG 0.310113 1_3:+49853656 None:intergenic
GCTGGAACTGAAGAAGATTA+AGG 0.321087 1_3:-49853759 Msa0122970:CDS
TATGTTATACCTTCAGATTT+CGG 0.328391 1_3:+49848056 None:intergenic
TAATTCATCTTCTTCCATAA+AGG 0.328727 1_3:-49849346 Msa0122970:CDS
GCAAAATAGTGTTCGATTTG+TGG 0.335906 1_3:-49849313 Msa0122970:CDS
AAGAAAATAGTTTATTGGTT+GGG 0.336358 1_3:-49849230 Msa0122970:CDS
GTGCCAGACATAACAAAATA+TGG 0.337395 1_3:+49846579 None:intergenic
TTTGTCTCTCCTGAAAATAT+TGG 0.339057 1_3:-49847595 Msa0122970:CDS
TCTGGCTGTAAAACATCTTT+AGG 0.339519 1_3:+49850135 None:intergenic
ACCAGCAGCCCCTGAACTTA+TGG 0.346102 1_3:+49848595 None:intergenic
ATTATCAAGCATGTCAATCT+TGG 0.359732 1_3:+49849365 None:intergenic
AGAAGCATTTCAGAGAGTTC+AGG 0.360974 1_3:-49849134 Msa0122970:CDS
TTATCAACTTCTTTGAGCTC+TGG 0.364253 1_3:+49849252 None:intergenic
CTTTCCTCAAATAAATTAGA+AGG 0.368022 1_3:+49850252 None:intergenic
AAGAGGCTTAAGGAGGAGTA+TGG 0.382059 1_3:-49848251 Msa0122970:intron
ATTCTTTAGACGGTGCTCTC+TGG 0.384591 1_3:-49849203 Msa0122970:CDS
TTCAGAGCTGGTATCTTACC+TGG 0.385422 1_3:-49848712 Msa0122970:intron
AGAAAATAGTTTATTGGTTG+GGG 0.387608 1_3:-49849229 Msa0122970:CDS
TAAATTTGAGTCGCGTAGTT+AGG 0.387882 1_3:-49846648 Msa0122970:three_prime_UTR
TATGGATTTGCTCAGGAGCT+TGG 0.388333 1_3:-49850087 Msa0122970:CDS
TGTTATACATGACAGTCTTT+GGG 0.392880 1_3:-49848666 Msa0122970:CDS
GTGCTCTCTGGGATATCTTT+CGG 0.394357 1_3:-49849191 Msa0122970:CDS
AAACAATATATGACTTGTAA+TGG 0.397925 1_3:-49846536 Msa0122970:three_prime_UTR
GGGAGCTACATGGTGATAAT+CGG 0.399614 1_3:-49849398 Msa0122970:CDS
GCCTCCTTCTAATTTATTTG+AGG 0.400880 1_3:-49850256 Msa0122970:CDS
ATTTGCTCAGGAGCTTGGGC+GGG 0.402390 1_3:-49850082 Msa0122970:CDS
CAAGTCTGCAGAGGACAAAT+TGG 0.404949 1_3:-49847524 Msa0122970:CDS
TGTGAAAACTATTGATTGCT+TGG 0.405542 1_3:-49851173 Msa0122970:CDS
TACATGACAGTCTTTGGGTC+AGG 0.409663 1_3:-49848661 Msa0122970:CDS
TGTATCTCAGAGATTGAATC+TGG 0.410142 1_3:-49846680 Msa0122970:three_prime_UTR
ATACCTTCAGATTTCGGACT+TGG 0.410789 1_3:+49848062 None:intergenic
TTCAATGGCACTGGAGCAAA+GGG 0.413215 1_3:-49851312 Msa0122970:CDS
GTAGTTAGGTGTGGTGATCT+TGG 0.415690 1_3:-49846634 Msa0122970:three_prime_UTR
CTCAACCTCATGGTCATTGT+TGG 0.418130 1_3:+49852416 None:intergenic
TTTGCTCAGGAGCTTGGGCG+GGG 0.418489 1_3:-49850081 Msa0122970:CDS
ATGGATTTGCTCAGGAGCTT+GGG 0.418850 1_3:-49850086 Msa0122970:CDS
TACATACCAACTGTTAATAC+AGG 0.419767 1_3:+49853393 None:intergenic
AATGTACTTGAATGTACATC+AGG 0.426491 1_3:-49851271 Msa0122970:CDS
CAGTCTCCCACCATAAGTTC+AGG 0.426706 1_3:-49848605 Msa0122970:CDS
GTCCTTATTACAGACCAATA+AGG 0.427034 1_3:+49853498 None:intergenic
TCATCCAATCGTCTTAAATA+CGG 0.427692 1_3:+49852363 None:intergenic
TGGGTACACAAAGGCTCGCC+TGG 0.428484 1_3:-49850319 Msa0122970:CDS
TCAAATAAAACGTCTGATCA+TGG 0.431981 1_3:+49848288 None:intergenic
TATGAACTCGGCACAATGAC+GGG 0.437450 1_3:+49850224 None:intergenic
TTTGAAAATTGGAATGTAAA+CGG 0.438366 1_3:+49854081 None:intergenic
AACAACACAGTTGCTTTCAC+AGG 0.439858 1_3:-49853989 Msa0122970:CDS
CTTGTAATGGTGTTCTTACA+AGG 0.441246 1_3:-49846523 Msa0122970:three_prime_UTR
CTGGAACTGAAGAAGATTAA+GGG 0.442023 1_3:-49853758 Msa0122970:CDS
TTCTTTAGACGGTGCTCTCT+GGG 0.443773 1_3:-49849202 Msa0122970:CDS
GGACTGGCTTAATTGGCCTC+AGG 0.444813 1_3:-49850298 Msa0122970:CDS
TTGCAATTGCAAAGCATGCT+TGG 0.446682 1_3:-49852564 Msa0122970:CDS
TTGTGTACCCAGTAAAGAAT+TGG 0.446939 1_3:+49850331 None:intergenic
TCTTGACCATTCACGAATCT+CGG 0.449180 1_3:+49851660 None:intergenic
AATGTACATCAGGTTTAAGC+TGG 0.453673 1_3:-49851261 Msa0122970:CDS
GACAAAATCAAGTGCAACCT+TGG 0.456526 1_3:+49847612 None:intergenic
TGAGAAGGAGTGAGCGTGCT+AGG 0.457513 1_3:-49853832 Msa0122970:CDS
ATGTCAGATGCATTCAAAAC+AGG 0.458193 1_3:+49851436 None:intergenic
AATGGAGAAGGAAGCCGAAA+AGG 0.459164 1_3:-49853864 Msa0122970:CDS
AGGAAGAAGAAGGTGGCAAT+TGG 0.459943 1_3:-49853725 Msa0122970:CDS
TGAAATGCACGGAATGCAAC+CGG 0.461269 1_3:-49853432 Msa0122970:CDS
GAAGTATGCTTCTCAGTTCA+AGG 0.462341 1_3:+49851566 None:intergenic
ACACAAAGGCTCGCCTGGAC+TGG 0.464280 1_3:-49850314 Msa0122970:CDS
CTTTGTTGCTGCGAGCTTCG+TGG 0.465758 1_3:-49851811 Msa0122970:CDS
GCTTGATCTGGTCGAGAAGT+TGG 0.466266 1_3:-49846939 Msa0122970:CDS
GACGGATGTGGAGGAGGAGC+TGG 0.466701 1_3:-49853777 Msa0122970:CDS
ATTTGCACCAATTCTTTACT+GGG 0.468225 1_3:-49850338 Msa0122970:CDS
AAAGAAAATAGTTTATTGGT+TGG 0.470270 1_3:-49849231 Msa0122970:CDS
ATTCGTGAATGGTCAAGATC+TGG 0.470424 1_3:-49851655 Msa0122970:CDS
AGGGTATGCAAAATTTCTTC+CGG 0.470503 1_3:+49853413 None:intergenic
TGTTGATGCTGCCGCTCCTC+CGG 0.475825 1_3:-49853912 Msa0122970:CDS
TTATCAAGCATGTCAATCTT+GGG 0.478672 1_3:+49849366 None:intergenic
GCCGATGATGATTGTGATCA+TGG 0.480443 1_3:-49851592 Msa0122970:CDS
TCATATTGCTGAAGTGAAGC+TGG 0.481347 1_3:-49849481 Msa0122970:CDS
ATGTCCTCCTCTTTCAAGTC+AGG 0.481667 1_3:+49852617 None:intergenic
ACGATTGGATGAAGAACAAA+TGG 0.482210 1_3:-49852352 Msa0122970:CDS
AGCTTCATCAGGAGCAGCTA+TGG 0.485026 1_3:+49853937 None:intergenic
TGTGATTTACTGGAAGTTTG+CGG 0.485220 1_3:+49847545 None:intergenic
TATTGCTTATGGATTTGCTC+AGG 0.486399 1_3:-49850094 Msa0122970:CDS
GGTTTCTTGATTATCAGGAA+TGG 0.486545 1_3:+49853958 None:intergenic
ACCATAAGTTCAGGGGCTGC+TGG 0.486611 1_3:-49848596 Msa0122970:intron
CCATTCACGAATCTCGGGTT+GGG 0.489370 1_3:+49851666 None:intergenic
AAGATAAACTCAAACTCGAT+TGG 0.491141 1_3:+49851763 None:intergenic
GATTTGCTCAGGAGCTTGGG+CGG 0.493090 1_3:-49850083 Msa0122970:CDS
TATGTATGCTATGCTTGATC+TGG 0.494282 1_3:-49846951 Msa0122970:CDS
TGATGAAATCAATGCTGCTC+AGG 0.495231 1_3:-49853690 Msa0122970:CDS
TCTTCCGTATTTAAGACGAT+TGG 0.495391 1_3:-49852367 Msa0122970:CDS
CTTGACCATTCACGAATCTC+GGG 0.495468 1_3:+49851661 None:intergenic
GTAAAAGAAATGACAAGGGC+AGG 0.498499 1_3:-49853459 Msa0122970:CDS
ATGGAGAAGGAAGCCGAAAA+GGG 0.499654 1_3:-49853863 Msa0122970:CDS
CAGCTTCTGAACAAAAGTCC+AGG 0.502730 1_3:+49848120 None:intergenic
CCTTCAGATTTCGGACTTGG+TGG 0.506047 1_3:+49848065 None:intergenic
TGAAGAACAAATGGCTGAGA+AGG 0.507808 1_3:-49852343 Msa0122970:CDS
GCATCAACAGAAGCTTCATC+AGG 0.508288 1_3:+49853926 None:intergenic
GTTGAATGAGGATTACTTGA+CGG 0.509960 1_3:-49853795 Msa0122970:CDS
AAACCCATCAGCATCTAGCT+AGG 0.511851 1_3:-49854118 Msa0122970:five_prime_UTR
TGTATAACAATAAACTGAGC+TGG 0.512690 1_3:+49848680 None:intergenic
TCAGAGATTGAATCTGGATA+GGG 0.513367 1_3:-49846674 Msa0122970:three_prime_UTR
GGAGCTACATGGTGATAATC+GGG 0.514858 1_3:-49849397 Msa0122970:CDS
TTTCAATGGCACTGGAGCAA+AGG 0.515097 1_3:-49851313 Msa0122970:CDS
ACCATTCACGAATCTCGGGT+TGG 0.516372 1_3:+49851665 None:intergenic
GCTCCCTCTTGTCTTGCTCA+AGG 0.519343 1_3:+49849415 None:intergenic
GACATTGCCAAGAAATGTCC+AGG 0.520062 1_3:-49852599 Msa0122970:CDS
ACTTGGTGGGGACAACCAGC+TGG 0.521593 1_3:+49848079 None:intergenic
AGATTAAGGGGAAACGTGGT+AGG 0.523807 1_3:-49853745 Msa0122970:CDS
TACAGTTTACATAGGAACCT+TGG 0.524108 1_3:+49846705 None:intergenic
AAACTATTGATTGCTTGGAT+TGG 0.524576 1_3:-49851168 Msa0122970:CDS
AGTCTCCCACCATAAGTTCA+GGG 0.525156 1_3:-49848604 Msa0122970:CDS
GCATACCCTGTATTAACAGT+TGG 0.527233 1_3:-49853399 Msa0122970:intron
CTGTGGAGACTTCTGATAGT+AGG 0.527371 1_3:-49851474 Msa0122970:CDS
AGAACTTCTTATACTGTCCC+AGG 0.529232 1_3:-49851369 Msa0122970:CDS
GAATATACAGATCCTTTCAA+TGG 0.530031 1_3:-49850183 Msa0122970:CDS
GGACTCACCTGCACTTATCA+AGG 0.530918 1_3:-49852543 Msa0122970:intron
CGATTTGTGGAAAATGGAAG+TGG 0.534768 1_3:-49849300 Msa0122970:CDS
ATAAAACGTCTGATCATGGA+TGG 0.535414 1_3:+49848292 None:intergenic
CCATTGCTCTCCTTTAAAGC+AGG 0.538406 1_3:-49849106 Msa0122970:intron
TTCAGATTTCGGACTTGGTG+GGG 0.539205 1_3:+49848067 None:intergenic
CTCAGAGATTGAATCTGGAT+AGG 0.540049 1_3:-49846675 Msa0122970:three_prime_UTR
GGATCTGTATATTCTTTGAA+CGG 0.541600 1_3:+49850192 None:intergenic
ATGACGTAGATTTACTGCCC+TGG 0.541910 1_3:+49851351 None:intergenic
TTGCAATTACCACAGCATCC+TGG 0.543302 1_3:+49852581 None:intergenic
TTACTTGACGGATGTGGAGG+AGG 0.543839 1_3:-49853783 Msa0122970:CDS
ACATGACAGTCTTTGGGTCA+GGG 0.548110 1_3:-49848660 Msa0122970:CDS
CTGCCACGTTTCTTTGCCGG+AGG 0.549368 1_3:+49853896 None:intergenic
CGAGGGCGTGATTATCTGCA+TGG 0.550325 1_3:-49851739 Msa0122970:CDS
TGAGGATTACTTGACGGATG+TGG 0.552319 1_3:-49853789 Msa0122970:CDS
GACTTGTAGGAATTGAACCC+TGG 0.555009 1_3:-49848138 Msa0122970:intron
GCTTGGTATTACGTATCTGA+CGG 0.555671 1_3:+49851212 None:intergenic
GAACTGACCTTGATAAGTGC+AGG 0.556203 1_3:+49852536 None:intergenic
ACAACACAGTTGCTTTCACA+GGG 0.556589 1_3:-49853988 Msa0122970:CDS
CTTCAGATTTCGGACTTGGT+GGG 0.557725 1_3:+49848066 None:intergenic
TAAAACGTCTGATCATGGAT+GGG 0.558437 1_3:+49848293 None:intergenic
TGACGTAGATTTACTGCCCT+GGG 0.558873 1_3:+49851352 None:intergenic
AATGCACGCCACATGACAAA+CGG 0.559884 1_3:+49851235 None:intergenic
GAAATCAATGCTGCTCAGGA+GGG 0.560506 1_3:-49853686 Msa0122970:CDS
GCTGGGAACCGTTTGTCATG+TGG 0.563485 1_3:-49851243 Msa0122970:CDS
CTGGGATATCTTTCGGAGAG+AGG 0.564748 1_3:-49849184 Msa0122970:CDS
AAATCAATGCTGCTCAGGAG+GGG 0.565311 1_3:-49853685 Msa0122970:CDS
CACGAAGCTCGCAGCAACAA+AGG 0.565525 1_3:+49851812 None:intergenic
AATTAAGCTTCAAGTTGCTG+TGG 0.566902 1_3:-49851491 Msa0122970:CDS
TGAAATCAATGCTGCTCAGG+AGG 0.567663 1_3:-49853687 Msa0122970:CDS
AAACCCTAGCTAGATGCTGA+TGG 0.569175 1_3:+49854114 None:intergenic
GCACCTTGAGCAAGACAAGA+GGG 0.570458 1_3:-49849418 Msa0122970:CDS
ACAGTATAAGAAGTTCTCAC+TGG 0.571064 1_3:+49851375 None:intergenic
AAGTGGAATATGTGATGAAA+AGG 0.573587 1_3:-49849283 Msa0122970:CDS
TCAGAGCTGGTATCTTACCT+GGG 0.578346 1_3:-49848711 Msa0122970:intron
GAGGCCAATTAAGCCAGTCC+AGG 0.578924 1_3:+49850301 None:intergenic
TCTTTGTATTGCAACTGTAG+AGG 0.579879 1_3:-49846609 Msa0122970:three_prime_UTR
AATCAATGCTGCTCAGGAGG+GGG 0.580226 1_3:-49853684 Msa0122970:CDS
GAATAGTAGATCGTTGAATG+AGG 0.582028 1_3:-49853807 Msa0122970:CDS
TGTATATTCTTTGAACGGCA+AGG 0.583089 1_3:+49850197 None:intergenic
CCTGCTTTAAAGGAGAGCAA+TGG 0.584616 1_3:+49849106 None:intergenic
GAGTTTGAGTTTATCTTCCG+AGG 0.584896 1_3:-49851757 Msa0122970:CDS
TGGAACTGAAGAAGATTAAG+GGG 0.585226 1_3:-49853757 Msa0122970:CDS
GAAAATAGTTTATTGGTTGG+GGG 0.586081 1_3:-49849228 Msa0122970:CDS
GTTGCTGCGAGCTTCGTGGT+GGG 0.586137 1_3:-49851807 Msa0122970:CDS
GAAACGTGGTAGGAAGAAGA+AGG 0.586757 1_3:-49853735 Msa0122970:CDS
ATATGAACTCGGCACAATGA+CGG 0.586817 1_3:+49850223 None:intergenic
GGAGACTGAGTGAATGCAGG+TGG 0.587385 1_3:+49848620 None:intergenic
AAGGTATCCTGACTTGAAAG+AGG 0.587569 1_3:-49852624 Msa0122970:CDS
AGGTTTAGAACACCATTGAA+AGG 0.588651 1_3:+49850171 None:intergenic
AGCAGCCCCTGAACTTATGG+TGG 0.590049 1_3:+49848598 None:intergenic
CAAGACAAGAGGGAGCTACA+TGG 0.591607 1_3:-49849408 Msa0122970:CDS
AACCCTAGCTAGATGCTGAT+GGG 0.592672 1_3:+49854115 None:intergenic
AACCCATCAGCATCTAGCTA+GGG 0.593398 1_3:-49854117 Msa0122970:five_prime_UTR
GTCTGCAGAGGACAAATTGG+AGG 0.593405 1_3:-49847521 Msa0122970:intron
TGTTGCTGCGAGCTTCGTGG+TGG 0.594415 1_3:-49851808 Msa0122970:CDS
TGATCTGGTCGAGAAGTTGG+AGG 0.595507 1_3:-49846936 Msa0122970:CDS
TGATTGCTTGGATTGGTGTG+AGG 0.595645 1_3:-49851161 Msa0122970:intron
ACTTGGAGAGCTCAACCTCA+TGG 0.596456 1_3:+49852406 None:intergenic
AAAACGTCTGATCATGGATG+GGG 0.596952 1_3:+49848294 None:intergenic
CCCAACCCGAGATTCGTGAA+TGG 0.597529 1_3:-49851666 Msa0122970:CDS
ACGTTTCTTTGCCGGAGGAG+CGG 0.599042 1_3:+49853901 None:intergenic
CTTTAGGCAACTTCACAGCA+AGG 0.600321 1_3:+49850151 None:intergenic
AAGAAGGTGGCAATTGGTGT+CGG 0.600696 1_3:-49853719 Msa0122970:CDS
ATGTACATCAGGTTTAAGCT+GGG 0.604955 1_3:-49851260 Msa0122970:CDS
ACCATGATCACAATCATCAT+CGG 0.605104 1_3:+49851591 None:intergenic
CGAGTGCTTTCGTTTGACAG+AGG 0.605461 1_3:-49847572 Msa0122970:CDS
GTTATGTCTGGCACACCTTG+AGG 0.606055 1_3:-49846570 Msa0122970:three_prime_UTR
GGCAGTAAATCTACGTCATG+AGG 0.606103 1_3:-49851347 Msa0122970:CDS
TAAAAGAAATGACAAGGGCA+GGG 0.606870 1_3:-49853458 Msa0122970:CDS
TCCTCAAATAAATTAGAAGG+AGG 0.607054 1_3:+49850255 None:intergenic
TGGAATATGTGATGAAAAGG+TGG 0.607337 1_3:-49849280 Msa0122970:CDS
AGTTTGAGTTTATCTTCCGA+GGG 0.609136 1_3:-49851756 Msa0122970:CDS
GATACATCTACAGTTTACAT+AGG 0.609345 1_3:+49846697 None:intergenic
TCTTTCAGTTTCAAAACCTG+AGG 0.609559 1_3:+49850282 None:intergenic
AAAGTTCACTCGACAGACGA+AGG 0.612793 1_3:-49848415 Msa0122970:intron
AGCTTCTGAACAAAAGTCCA+GGG 0.617796 1_3:+49848121 None:intergenic
AGCACCTTGAGCAAGACAAG+AGG 0.618569 1_3:-49849419 Msa0122970:CDS
GAGATAGAAGCAAAGAGACA+AGG 0.619116 1_3:-49852321 Msa0122970:intron
TCGGGTTGGGCAGCAGCACG+AGG 0.619296 1_3:+49851679 None:intergenic
ATGCATTGAACAGCAACAGA+TGG 0.621495 1_3:-49853651 Msa0122970:intron
CGGCAAGGAAGATATGAACT+CGG 0.631163 1_3:+49850212 None:intergenic
TCGAGAAGTTGGAGGAAGCA+AGG 0.632086 1_3:-49846928 Msa0122970:intron
CTGAGCTGGAGATAGAGCCC+AGG 0.634823 1_3:+49848694 None:intergenic
GTCTCCCACCATAAGTTCAG+GGG 0.635175 1_3:-49848603 Msa0122970:CDS
TTGAGTCGCGTAGTTAGGTG+TGG 0.636929 1_3:-49846643 Msa0122970:three_prime_UTR
CATACACAATAGCACAAGGA+AGG 0.637072 1_3:-49851416 Msa0122970:CDS
GCTCCTCCGGCAAAGAAACG+TGG 0.637351 1_3:-49853899 Msa0122970:CDS
GTGGGAGACTGAGTGAATGC+AGG 0.638392 1_3:+49848617 None:intergenic
CATGCAGATAATCACGCCCT+CGG 0.639805 1_3:+49851740 None:intergenic
TTACAGGTCTGGAGAAACCA+AGG 0.639931 1_3:-49846722 Msa0122970:intron
GGATTACTTGACGGATGTGG+AGG 0.643926 1_3:-49853786 Msa0122970:CDS
CCACCAAGTCCGAAATCTGA+AGG 0.644909 1_3:-49848065 Msa0122970:intron
GCAGCCCCTGAACTTATGGT+GGG 0.645511 1_3:+49848599 None:intergenic
AAGTTCACTCGACAGACGAA+GGG 0.648292 1_3:-49848414 Msa0122970:CDS
GAAGTGAAGCTGGATTCTAA+GGG 0.652860 1_3:-49849471 Msa0122970:CDS
AAAAGGGCGAAAGTGTGAGA+AGG 0.653518 1_3:-49853847 Msa0122970:CDS
CTGACATACACAATAGCACA+AGG 0.658068 1_3:-49851420 Msa0122970:CDS
GGGCAGGGTTGTGAAATGCA+CGG 0.660572 1_3:-49853443 Msa0122970:CDS
AAACCCGAAAATTAGTACAC+AGG 0.661989 1_3:+49846484 None:intergenic
GGATGGCTTGCAGACAGTGA+TGG 0.662046 1_3:-49851634 Msa0122970:CDS
ATTCTTTACTGGGTACACAA+AGG 0.662591 1_3:-49850328 Msa0122970:CDS
ATGAACTCGGCACAATGACG+GGG 0.667242 1_3:+49850225 None:intergenic
GTATCCTGACTTGAAAGAGG+AGG 0.668706 1_3:-49852621 Msa0122970:CDS
TCAATGTAAAAGAAATGACA+AGG 0.668906 1_3:-49853464 Msa0122970:CDS
TAGTACACAGGATATACAAG+TGG 0.669313 1_3:+49846496 None:intergenic
CGTGGTGGGAAGCTTCTAGG+TGG 0.669451 1_3:-49851793 Msa0122970:CDS
CTACATGGTGATAATCGGGA+CGG 0.669945 1_3:-49849393 Msa0122970:CDS
GTGAATGGTCAAGATCTGGA+TGG 0.677090 1_3:-49851651 Msa0122970:CDS
AGTAAATCACAAGTCTGCAG+AGG 0.679551 1_3:-49847533 Msa0122970:CDS
ACATACCAACTGTTAATACA+GGG 0.682457 1_3:+49853394 None:intergenic
AAGAAATGTCCAGGATGCTG+TGG 0.691596 1_3:-49852590 Msa0122970:CDS
GAACTTCTTATACTGTCCCA+GGG 0.693482 1_3:-49851368 Msa0122970:CDS
GGGCGTGATTATCTGCATGG+TGG 0.701277 1_3:-49851736 Msa0122970:CDS
CTGCATCTGACATATCACAA+TGG 0.702155 1_3:+49850040 None:intergenic
ACGTGGTAGGAAGAAGAAGG+TGG 0.709702 1_3:-49853732 Msa0122970:CDS
AAGAAGATTAAGGGGAAACG+TGG 0.711553 1_3:-49853749 Msa0122970:CDS
CAATGTAAAAGAAATGACAA+GGG 0.715489 1_3:-49853463 Msa0122970:CDS
GAAAATTGGAATGTAAACGG+CGG 0.717466 1_3:+49854084 None:intergenic
GAGACTGAGTGAATGCAGGT+GGG 0.719316 1_3:+49848621 None:intergenic
AGAAACCAACAATGACCATG+AGG 0.730663 1_3:-49852421 Msa0122970:CDS
TCAATGGCACTGGAGCAAAG+GGG 0.769506 1_3:-49851311 Msa0122970:CDS
CAACACAGTTGCTTTCACAG+GGG 0.779411 1_3:-49853987 Msa0122970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATATTTATTAT+CGG - chr1_3:49847921-49847940 Msa0122970:intron 0.0%
!!! AATTTTTTTTTTTTTGTCTT+TGG - chr1_3:49848561-49848580 Msa0122970:intron 10.0%
!!! ATTTTTTTTTTTTTGTCTTT+GGG - chr1_3:49848562-49848581 Msa0122970:intron 10.0%
!!! ACTATAATTTTACTTTATTT+AGG - chr1_3:49849572-49849591 Msa0122970:intron 10.0%
!!! CTATAATTTTACTTTATTTA+GGG - chr1_3:49849573-49849592 Msa0122970:intron 10.0%
!!! ATTTTTCAAAAGAAAAAATT+GGG + chr1_3:49851815-49851834 None:intergenic 10.0%
!!! TATTTTTCAAAAGAAAAAAT+TGG + chr1_3:49851816-49851835 None:intergenic 10.0%
!!! TTCTTTTGAAAAATAATTTT+TGG - chr1_3:49851821-49851840 Msa0122970:CDS 10.0%
!! AAAGTTTATAACGTTATTAT+CGG - chr1_3:49846397-49846416 Msa0122970:three_prime_UTR 15.0%
!!! AAAAATATTTATTATCGGTT+TGG - chr1_3:49847926-49847945 Msa0122970:intron 15.0%
!! TTTAAATATTCTTCCAATTT+AGG + chr1_3:49851468-49851487 None:intergenic 15.0%
!!! ATTTAAAATAGATGATCAAA+CGG - chr1_3:49852776-49852795 Msa0122970:intron 15.0%
!! TTTGAAAATTGGAATGTAAA+CGG + chr1_3:49846543-49846562 None:intergenic 20.0%
!! TGTAGATTTATGTTTGAATT+TGG - chr1_3:49847033-49847052 Msa0122970:intron 20.0%
!! ACAGAATAAAACATAAGTTA+AGG + chr1_3:49847266-49847285 None:intergenic 20.0%
!! TACATTGTTTATAAAAGTGA+AGG + chr1_3:49847773-49847792 None:intergenic 20.0%
!!! GTGAAAAACATGATATTTTA+GGG - chr1_3:49847864-49847883 Msa0122970:intron 20.0%
!!! CTAAATTTGTTGATAATGTT+GGG + chr1_3:49849914-49849933 None:intergenic 20.0%
!!! TCTAAATTTGTTGATAATGT+TGG + chr1_3:49849915-49849934 None:intergenic 20.0%
!! AAAGAAAATGAATACAACTA+GGG + chr1_3:49850120-49850139 None:intergenic 20.0%
!! ATAAAAATTGCAGAAATTAC+TGG + chr1_3:49850232-49850251 None:intergenic 20.0%
!!! CATAAGCAATATATGTTTTT+GGG + chr1_3:49850518-49850537 None:intergenic 20.0%
!! TAAAATATCATAAGACATTG+TGG + chr1_3:49850644-49850663 None:intergenic 20.0%
!! TAATTGAGTATCATATTGAA+AGG - chr1_3:49850687-49850706 Msa0122970:intron 20.0%
!!! TCATTTTATAAGGTATCTTT+TGG - chr1_3:49850942-49850961 Msa0122970:intron 20.0%
!! AAAGAAAATAGTTTATTGGT+TGG - chr1_3:49851390-49851409 Msa0122970:CDS 20.0%
!!! AAGAAAATAGTTTATTGGTT+GGG - chr1_3:49851391-49851410 Msa0122970:CDS 20.0%
!!! ACAATTTTCTATTATCTGTT+GGG - chr1_3:49851552-49851571 Msa0122970:CDS 20.0%
!! TTAATGACTCAAGTTAAAAT+GGG + chr1_3:49851582-49851601 None:intergenic 20.0%
!!! AATAATTTTTGGTACATACT+TGG - chr1_3:49851832-49851851 Msa0122970:CDS 20.0%
!! ATTAAGATTATCAACTCAAT+GGG + chr1_3:49852166-49852185 None:intergenic 20.0%
!! TATTAAGATTATCAACTCAA+TGG + chr1_3:49852167-49852186 None:intergenic 20.0%
!! GAAATTAAATACAAATAGAG+TGG + chr1_3:49852271-49852290 None:intergenic 20.0%
!! GGTATAACATACATATATTA+TGG - chr1_3:49852577-49852596 Msa0122970:CDS 20.0%
!! CAAAAAAAAACTTTCTTGAA+TGG - chr1_3:49852826-49852845 Msa0122970:intron 20.0%
!!! TACATAACTTTAGTTTCTTT+AGG - chr1_3:49853828-49853847 Msa0122970:CDS 20.0%
!!! AAACAATATATGACTTGTAA+TGG - chr1_3:49854085-49854104 Msa0122970:five_prime_UTR 20.0%
!!! TCACAGCTTTAAACATAATA+AGG + chr1_3:49846481-49846500 None:intergenic 25.0%
! TGTTTGTAGTGTTTGAAAAT+TGG + chr1_3:49846554-49846573 None:intergenic 25.0%
! TTACATGTTGTATGTAATTG+TGG - chr1_3:49847058-49847077 Msa0122970:intron 25.0%
!!! TGTCATTTCTTTTACATTGA+TGG + chr1_3:49847157-49847176 None:intergenic 25.0%
! TCAATGTAAAAGAAATGACA+AGG - chr1_3:49847157-49847176 Msa0122970:intron 25.0%
! CAATGTAAAAGAAATGACAA+GGG - chr1_3:49847158-49847177 Msa0122970:intron 25.0%
! TGTTTATAAAAGTGAAGGTT+GGG + chr1_3:49847768-49847787 None:intergenic 25.0%
! TTGTTTATAAAAGTGAAGGT+TGG + chr1_3:49847769-49847788 None:intergenic 25.0%
!! GGTGAAAAACATGATATTTT+AGG - chr1_3:49847863-49847882 Msa0122970:intron 25.0%
!!! CATGATATTTTAGGGATATT+TGG - chr1_3:49847872-49847891 Msa0122970:intron 25.0%
!!! TTTATTATCGGTTTGGATTT+TGG - chr1_3:49847933-49847952 Msa0122970:intron 25.0%
! AGGAATAGTTAATCTATAAG+GGG + chr1_3:49848113-49848132 None:intergenic 25.0%
! CAGGAATAGTTAATCTATAA+GGG + chr1_3:49848114-49848133 None:intergenic 25.0%
! ACAGGAATAGTTAATCTATA+AGG + chr1_3:49848115-49848134 None:intergenic 25.0%
!! ACATTTGAAATGTGATAATC+TGG - chr1_3:49848150-49848169 Msa0122970:intron 25.0%
!! AAGTATTTTCAGCATATACT+TGG + chr1_3:49848235-49848254 None:intergenic 25.0%
! AAGCAACACACATTAATAAA+AGG + chr1_3:49848386-49848405 None:intergenic 25.0%
!! TTTTGCTTTACATACTAACT+CGG + chr1_3:49849096-49849115 None:intergenic 25.0%
!!! AGGATTTAAGACATTTTCAA+TGG - chr1_3:49849294-49849313 Msa0122970:CDS 25.0%
! TTGTGATCTTTGCTAAAATT+TGG - chr1_3:49849544-49849563 Msa0122970:intron 25.0%
!! TCATACATGTTTTCTGAATT+TGG - chr1_3:49849631-49849650 Msa0122970:intron 25.0%
!! CATACATGTTTTCTGAATTT+GGG - chr1_3:49849632-49849651 Msa0122970:intron 25.0%
!! TTACTGTTCCAACTAATTTT+TGG - chr1_3:49849768-49849787 Msa0122970:intron 25.0%
! TTGTATATTTGCAGACAAAT+AGG + chr1_3:49849879-49849898 None:intergenic 25.0%
! GATGAGAGAAGTTATAATTA+AGG + chr1_3:49849961-49849980 None:intergenic 25.0%
! AAGAAAATGAATACAACTAG+GGG + chr1_3:49850119-49850138 None:intergenic 25.0%
! GAAAGAAAATGAATACAACT+AGG + chr1_3:49850121-49850140 None:intergenic 25.0%
! CTTTCCTCAAATAAATTAGA+AGG + chr1_3:49850372-49850391 None:intergenic 25.0%
!! CCATAAGCAATATATGTTTT+TGG + chr1_3:49850519-49850538 None:intergenic 25.0%
! CCAAAAACATATATTGCTTA+TGG - chr1_3:49850516-49850535 Msa0122970:intron 25.0%
!! AGTATTTTCAAAGAACACTA+CGG + chr1_3:49850815-49850834 None:intergenic 25.0%
!! ATTAGCTGCATCATTTTATA+AGG - chr1_3:49850932-49850951 Msa0122970:intron 25.0%
!!! CTGTGCTTCATTTTTTTTTT+TGG - chr1_3:49851031-49851050 Msa0122970:intron 25.0%
!! AACATGTTTCTTGTTTAATC+TGG - chr1_3:49851095-49851114 Msa0122970:intron 25.0%
!!! CTTTTGTGTCAGTTTTTTAA+TGG + chr1_3:49851184-49851203 None:intergenic 25.0%
! TAATTCATCTTCTTCCATAA+AGG - chr1_3:49851275-49851294 Msa0122970:CDS 25.0%
!! AGAAAATAGTTTATTGGTTG+GGG - chr1_3:49851392-49851411 Msa0122970:CDS 25.0%
!! ACTAATTTTACCTGCTTTAA+AGG + chr1_3:49851528-49851547 None:intergenic 25.0%
!! GACAATTTTCTATTATCTGT+TGG - chr1_3:49851551-49851570 Msa0122970:CDS 25.0%
! TAATGACTCAAGTTAAAATG+GGG + chr1_3:49851581-49851600 None:intergenic 25.0%
! GTTAATGACTCAAGTTAAAA+TGG + chr1_3:49851583-49851602 None:intergenic 25.0%
! TACTGAAAGTAAAACTAACT+GGG + chr1_3:49851620-49851639 None:intergenic 25.0%
! TTACTGAAAGTAAAACTAAC+TGG + chr1_3:49851621-49851640 None:intergenic 25.0%
! GTCACTGTATATGTAATATT+AGG - chr1_3:49851655-49851674 Msa0122970:CDS 25.0%
!! AGATAGCATCAATTTTATCA+TGG + chr1_3:49851689-49851708 None:intergenic 25.0%
!! ACACAATTAATCAAAAGTGT+CGG - chr1_3:49851726-49851745 Msa0122970:CDS 25.0%
! AAAAAATTGGGTACTTTGTT+TGG + chr1_3:49851803-49851822 None:intergenic 25.0%
! TATTGAAACATATGATATGC+AGG - chr1_3:49852124-49852143 Msa0122970:intron 25.0%
! TATGTTATACCTTCAGATTT+CGG + chr1_3:49852568-49852587 None:intergenic 25.0%
! GATATGCAATATCTCAATAT+TGG + chr1_3:49853176-49853195 None:intergenic 25.0%
! AAAGAAGCTAATAACAAAAC+AGG + chr1_3:49853198-49853217 None:intergenic 25.0%
! ATTCAACAAGTAAAAACAGT+TGG + chr1_3:49853502-49853521 None:intergenic 25.0%
!! TAACAATCTTTTGATATGAC+AGG + chr1_3:49853582-49853601 None:intergenic 25.0%
!! ATATCCTGTGTACTAATTTT+CGG - chr1_3:49854133-49854152 Msa0122970:five_prime_UTR 25.0%
! TCATACTCGTCTTTAATTTC+AGG - chr1_3:49846440-49846459 Msa0122970:three_prime_UTR 30.0%
! TCTCCATTTGAATTTTTCCA+TGG - chr1_3:49846589-49846608 Msa0122970:three_prime_UTR 30.0%
! TTACTGTTTCTCAATCAACA+GGG - chr1_3:49847086-49847105 Msa0122970:intron 30.0%
ACATACCAACTGTTAATACA+GGG + chr1_3:49847230-49847249 None:intergenic 30.0%
TACATACCAACTGTTAATAC+AGG + chr1_3:49847231-49847250 None:intergenic 30.0%
!! TTAACTTGCTTCCTATTTGT+TGG - chr1_3:49847286-49847305 Msa0122970:intron 30.0%
ACACAAGATAACCAACAAAT+AGG + chr1_3:49847300-49847319 None:intergenic 30.0%
! TATTTGTTGGTTATCTTGTG+TGG - chr1_3:49847299-49847318 Msa0122970:intron 30.0%
! ATTTGTTGGTTATCTTGTGT+GGG - chr1_3:49847300-49847319 Msa0122970:intron 30.0%
ATTGATAAACTCACACTTGA+GGG + chr1_3:49847460-49847479 None:intergenic 30.0%
AATTGATAAACTCACACTTG+AGG + chr1_3:49847461-49847480 None:intergenic 30.0%
!!! TAAGGTTTTAGGTTACAATG+TGG + chr1_3:49847712-49847731 None:intergenic 30.0%
CATTGTAACCTAAAACCTTA+AGG - chr1_3:49847712-49847731 Msa0122970:intron 30.0%
!! ATGTTTTTGCTGTCTTATGA+AGG - chr1_3:49847978-49847997 Msa0122970:intron 30.0%
GGAATAGTTAATCTATAAGG+GGG + chr1_3:49848112-49848131 None:intergenic 30.0%
TGTAGAATACAACAAATCAC+AGG + chr1_3:49848133-49848152 None:intergenic 30.0%
TCATCCAATCGTCTTAAATA+CGG + chr1_3:49848261-49848280 None:intergenic 30.0%
AATCCAAAAGAAAGAAGAAG+AGG + chr1_3:49848464-49848483 None:intergenic 30.0%
ATATAAGTATAGTGTGAAGC+AGG + chr1_3:49848504-49848523 None:intergenic 30.0%
AAGATAAACTCAAACTCGAT+TGG + chr1_3:49848861-49848880 None:intergenic 30.0%
AGTACATTGCTGACAATTAT+AGG + chr1_3:49849338-49849357 None:intergenic 30.0%
AATGTACTTGAATGTACATC+AGG - chr1_3:49849350-49849369 Msa0122970:CDS 30.0%
! TACCAAGCAAAAAACACTTT+TGG - chr1_3:49849424-49849443 Msa0122970:CDS 30.0%
!!! ATCCAAAAGTGTTTTTTGCT+TGG + chr1_3:49849429-49849448 None:intergenic 30.0%
! TGTGAAAACTATTGATTGCT+TGG - chr1_3:49849448-49849467 Msa0122970:CDS 30.0%
! AAACTATTGATTGCTTGGAT+TGG - chr1_3:49849453-49849472 Msa0122970:CDS 30.0%
AAGTTTCTCTTAATCCCAAA+AGG + chr1_3:49849667-49849686 None:intergenic 30.0%
TGAATGTCTTGAAAAGATGT+TGG - chr1_3:49849736-49849755 Msa0122970:intron 30.0%
AATTAGTTGGAACAGTAACT+TGG + chr1_3:49849766-49849785 None:intergenic 30.0%
TAGATCAAGCAAAAAGAACA+GGG + chr1_3:49850069-49850088 None:intergenic 30.0%
GTGTGACAAACTATATAGAA+AGG + chr1_3:49850143-49850162 None:intergenic 30.0%
AATTTGCACCAATTCTTTAC+TGG - chr1_3:49850282-49850301 Msa0122970:CDS 30.0%
ATTTGCACCAATTCTTTACT+GGG - chr1_3:49850283-49850302 Msa0122970:CDS 30.0%
!!! AGGTTTTGAAACTGAAAGAT+TGG - chr1_3:49850343-49850362 Msa0122970:CDS 30.0%
TCCTCAAATAAATTAGAAGG+AGG + chr1_3:49850369-49850388 None:intergenic 30.0%
GGATCTGTATATTCTTTGAA+CGG + chr1_3:49850432-49850451 None:intergenic 30.0%
GAATATACAGATCCTTTCAA+TGG - chr1_3:49850438-49850457 Msa0122970:intron 30.0%
! ATTCATAGTCTTTCTAGCAT+TGG - chr1_3:49850613-49850632 Msa0122970:intron 30.0%
!! TTGAAAGGTGCATAGTTTTT+AGG - chr1_3:49850702-49850721 Msa0122970:intron 30.0%
!!! GTGTTACTTACCTTTTGTTT+TGG - chr1_3:49850872-49850891 Msa0122970:intron 30.0%
TTAGCAGTAACCAAAACAAA+AGG + chr1_3:49850885-49850904 None:intergenic 30.0%
ATGGATCTGCTAATAAGTAT+AGG + chr1_3:49850987-49851006 None:intergenic 30.0%
TGAATGCATACTCTATTATG+AGG - chr1_3:49851065-49851084 Msa0122970:intron 30.0%
!!! CTTGTTTAATCTGGCTTTTT+AGG - chr1_3:49851104-49851123 Msa0122970:intron 30.0%
TTATCAAGCATGTCAATCTT+GGG + chr1_3:49851258-49851277 None:intergenic 30.0%
ATTATCAAGCATGTCAATCT+TGG + chr1_3:49851259-49851278 None:intergenic 30.0%
AAGTGGAATATGTGATGAAA+AGG - chr1_3:49851338-49851357 Msa0122970:CDS 30.0%
! GAAAATAGTTTATTGGTTGG+GGG - chr1_3:49851393-49851412 Msa0122970:CDS 30.0%
TGTATAACAATAAACTGAGC+TGG + chr1_3:49851944-49851963 None:intergenic 30.0%
TTGTTATACATGACAGTCTT+TGG - chr1_3:49851954-49851973 Msa0122970:intron 30.0%
TGTTATACATGACAGTCTTT+GGG - chr1_3:49851955-49851974 Msa0122970:intron 30.0%
ATTCCTTATTCATGTCATGA+CGG + chr1_3:49852084-49852103 None:intergenic 30.0%
AACACCTTCTTTGATATTGT+AGG - chr1_3:49852297-49852316 Msa0122970:intron 30.0%
ACAACCTACAATATCAAAGA+AGG + chr1_3:49852304-49852323 None:intergenic 30.0%
TCAAATAAAACGTCTGATCA+TGG + chr1_3:49852336-49852355 None:intergenic 30.0%
!! ACAATTCAACATTGACTTGT+AGG - chr1_3:49852470-49852489 Msa0122970:intron 30.0%
AGAAGAGAGAGAATACATAT+AGG - chr1_3:49852682-49852701 Msa0122970:intron 30.0%
ATTCCCATCAGTATATTCAT+GGG - chr1_3:49852723-49852742 Msa0122970:intron 30.0%
AACGGAATAACTTTCTTGAA+TGG - chr1_3:49852794-49852813 Msa0122970:intron 30.0%
! GTAGTGAAGATTTTCTTTCA+CGG + chr1_3:49852858-49852877 None:intergenic 30.0%
GAGCTAGTGATAGATAATTT+AGG + chr1_3:49852897-49852916 None:intergenic 30.0%
TTTGTCTCTCCTGAAAATAT+TGG - chr1_3:49853026-49853045 Msa0122970:intron 30.0%
TCAAATCAACAAATGTAGCA+TGG + chr1_3:49853132-49853151 None:intergenic 30.0%
!! CAGATTCTAAAACAGCTATT+GGG + chr1_3:49853240-49853259 None:intergenic 30.0%
!!! CAATAGCTGTTTTAGAATCT+GGG - chr1_3:49853239-49853258 Msa0122970:intron 30.0%
AACCTATTAGTGTTTGAATC+TGG + chr1_3:49853342-49853361 None:intergenic 30.0%
!! AGTAACATAGGTTCTGAAAT+AGG + chr1_3:49853546-49853565 None:intergenic 30.0%
CAAGTATGATACAGTAACAT+AGG + chr1_3:49853558-49853577 None:intergenic 30.0%
TATCACAAATCCATAACCAT+AGG + chr1_3:49853740-49853759 None:intergenic 30.0%
ATGTCTGTCATTCAATTTAC+AGG - chr1_3:49853883-49853902 Msa0122970:CDS 30.0%
GATACATCTACAGTTTACAT+AGG + chr1_3:49853927-49853946 None:intergenic 30.0%
!! AGTCCATATTTTGTTATGTC+TGG - chr1_3:49854039-49854058 Msa0122970:five_prime_UTR 30.0%
GTTTAAAAAATGCTTCCTCA+AGG + chr1_3:49854069-49854088 None:intergenic 30.0%
! TATCCTGTGTACTAATTTTC+GGG - chr1_3:49854134-49854153 Msa0122970:five_prime_UTR 30.0%
GAAAATTGGAATGTAAACGG+CGG + chr1_3:49846540-49846559 None:intergenic 35.0%
! CCATTTGAATTTTTCCATGG+CGG - chr1_3:49846592-49846611 Msa0122970:three_prime_UTR 35.0%
! CATTTGAATTTTTCCATGGC+GGG - chr1_3:49846593-49846612 Msa0122970:three_prime_UTR 35.0%
! ATTTGAATTTTTCCATGGCG+GGG - chr1_3:49846594-49846613 Msa0122970:three_prime_UTR 35.0%
GGTTTCTTGATTATCAGGAA+TGG + chr1_3:49846666-49846685 None:intergenic 35.0%
GCTATGGTTTCTTGATTATC+AGG + chr1_3:49846671-49846690 None:intergenic 35.0%
CAGAAAGAGAAAAATGGAGA+AGG - chr1_3:49846745-49846764 Msa0122970:intron 35.0%
GAATAGTAGATCGTTGAATG+AGG - chr1_3:49846814-49846833 Msa0122970:intron 35.0%
GTTGAATGAGGATTACTTGA+CGG - chr1_3:49846826-49846845 Msa0122970:intron 35.0%
CTGGAACTGAAGAAGATTAA+GGG - chr1_3:49846863-49846882 Msa0122970:intron 35.0%
TGGAACTGAAGAAGATTAAG+GGG - chr1_3:49846864-49846883 Msa0122970:intron 35.0%
! GTTACTGTTTCTCAATCAAC+AGG - chr1_3:49847085-49847104 Msa0122970:intron 35.0%
! TACTGTTTCTCAATCAACAG+GGG - chr1_3:49847087-49847106 Msa0122970:intron 35.0%
GATTGAAGATGTGTCCTTAT+TGG - chr1_3:49847109-49847128 Msa0122970:intron 35.0%
! GTCCTTATTGGTCTGTAATA+AGG - chr1_3:49847121-49847140 Msa0122970:intron 35.0%
GTCCTTATTACAGACCAATA+AGG + chr1_3:49847126-49847145 None:intergenic 35.0%
TAAAAGAAATGACAAGGGCA+GGG - chr1_3:49847163-49847182 Msa0122970:intron 35.0%
AGGGTATGCAAAATTTCTTC+CGG + chr1_3:49847211-49847230 None:intergenic 35.0%
! TTTGTTGGTTATCTTGTGTG+GGG - chr1_3:49847301-49847320 Msa0122970:intron 35.0%
CACTTTAACCCAAAACCTTA+AGG - chr1_3:49847392-49847411 Msa0122970:intron 35.0%
TTGATAAACTCACACTTGAG+GGG + chr1_3:49847459-49847478 None:intergenic 35.0%
ATGAAAGAACTTCCACTTGA+GGG + chr1_3:49847496-49847515 None:intergenic 35.0%
ATATCGAAAGTTCAGGTCAT+GGG + chr1_3:49847573-49847592 None:intergenic 35.0%
TATATCGAAAGTTCAGGTCA+TGG + chr1_3:49847574-49847593 None:intergenic 35.0%
TGACCTGAACTTTCGATATA+AGG - chr1_3:49847574-49847593 Msa0122970:CDS 35.0%
AACCTAAAACCTTAAGGCAA+TGG - chr1_3:49847718-49847737 Msa0122970:intron 35.0%
ACCTAAAACCTTAAGGCAAT+GGG - chr1_3:49847719-49847738 Msa0122970:intron 35.0%
TTCAATAACAAGACGTTGTG+TGG + chr1_3:49847819-49847838 None:intergenic 35.0%
!! GTCTTGTTATTGAATGAGAC+TGG - chr1_3:49847825-49847844 Msa0122970:intron 35.0%
AAGACAGCAAAAACATACAC+TGG + chr1_3:49847974-49847993 None:intergenic 35.0%
! TCTTCCGTATTTAAGACGAT+TGG - chr1_3:49848254-49848273 Msa0122970:CDS 35.0%
ACGATTGGATGAAGAACAAA+TGG - chr1_3:49848269-49848288 Msa0122970:CDS 35.0%
! ACTCCTCTTCTTCTTTCTTT+TGG - chr1_3:49848458-49848477 Msa0122970:intron 35.0%
!!! CTCTTTTTTAGGGATATCTG+CGG + chr1_3:49848631-49848650 None:intergenic 35.0%
!!! AGTACACACGCTCTTTTTTA+GGG + chr1_3:49848641-49848660 None:intergenic 35.0%
! AGTTTGAGTTTATCTTCCGA+GGG - chr1_3:49848865-49848884 Msa0122970:intron 35.0%
ACCATGATCACAATCATCAT+CGG + chr1_3:49849033-49849052 None:intergenic 35.0%
!! AATTAAGCTTCAAGTTGCTG+TGG - chr1_3:49849130-49849149 Msa0122970:CDS 35.0%
ATGTCAGATGCATTCAAAAC+AGG + chr1_3:49849188-49849207 None:intergenic 35.0%
ACAGTATAAGAAGTTCTCAC+TGG + chr1_3:49849249-49849268 None:intergenic 35.0%
! TAAGACATTTTCAATGGCAC+TGG - chr1_3:49849300-49849319 Msa0122970:CDS 35.0%
AATGTACATCAGGTTTAAGC+TGG - chr1_3:49849360-49849379 Msa0122970:CDS 35.0%
ATGTACATCAGGTTTAAGCT+GGG - chr1_3:49849361-49849380 Msa0122970:CDS 35.0%
CACAATACAAGCTCAAGATA+TGG + chr1_3:49849529-49849548 None:intergenic 35.0%
! TTTGGGTATTTCCATCCTTT+TGG - chr1_3:49849649-49849668 Msa0122970:intron 35.0%
! TTGGGTATTTCCATCCTTTT+GGG - chr1_3:49849650-49849669 Msa0122970:intron 35.0%
TTCTCTTAATCCCAAAAGGA+TGG + chr1_3:49849663-49849682 None:intergenic 35.0%
!! CTGTTCCAACTAATTTTTGG+CGG - chr1_3:49849771-49849790 Msa0122970:intron 35.0%
AAAAACGTGTCTAGACTAGA+TGG - chr1_3:49849809-49849828 Msa0122970:intron 35.0%
CTCATCTTTCTCTTAGTCAT+AGG - chr1_3:49849975-49849994 Msa0122970:intron 35.0%
GTAGATCAAGCAAAAAGAAC+AGG + chr1_3:49850070-49850089 None:intergenic 35.0%
!! AAGGGCAACAAAAAGTACTT+GGG + chr1_3:49850092-49850111 None:intergenic 35.0%
CAGATAGACATGTCATGTAA+AGG + chr1_3:49850206-49850225 None:intergenic 35.0%
TTGTGTACCCAGTAAAGAAT+TGG + chr1_3:49850293-49850312 None:intergenic 35.0%
ATTCTTTACTGGGTACACAA+AGG - chr1_3:49850293-49850312 Msa0122970:CDS 35.0%
TCTTTCAGTTTCAAAACCTG+AGG + chr1_3:49850342-49850361 None:intergenic 35.0%
GCCTCCTTCTAATTTATTTG+AGG - chr1_3:49850365-49850384 Msa0122970:intron 35.0%
TGTATATTCTTTGAACGGCA+AGG + chr1_3:49850427-49850446 None:intergenic 35.0%
! AGGTTTAGAACACCATTGAA+AGG + chr1_3:49850453-49850472 None:intergenic 35.0%
TCTGGCTGTAAAACATCTTT+AGG + chr1_3:49850489-49850508 None:intergenic 35.0%
! TATTGCTTATGGATTTGCTC+AGG - chr1_3:49850527-49850546 Msa0122970:intron 35.0%
GTGCAACAAGCAAAAAAGTA+AGG + chr1_3:49850793-49850812 None:intergenic 35.0%
! GCAAAATAGTGTTCGATTTG+TGG - chr1_3:49851308-49851327 Msa0122970:CDS 35.0%
! AGTGTTCGATTTGTGGAAAA+TGG - chr1_3:49851315-49851334 Msa0122970:CDS 35.0%
TGGAATATGTGATGAAAAGG+TGG - chr1_3:49851341-49851360 Msa0122970:CDS 35.0%
GATACACATGAGTACTTCTT+GGG + chr1_3:49851781-49851800 None:intergenic 35.0%
TTTGGGTACATCTTGAATGT+TGG - chr1_3:49851876-49851895 Msa0122970:CDS 35.0%
TAAAACGTCTGATCATGGAT+GGG + chr1_3:49852331-49852350 None:intergenic 35.0%
ATAAAACGTCTGATCATGGA+TGG + chr1_3:49852332-49852351 None:intergenic 35.0%
TGACTATCGAGCATAAAAAG+AGG - chr1_3:49852353-49852372 Msa0122970:CDS 35.0%
TATACACTTTGTGGCAAACA+AGG + chr1_3:49852632-49852651 None:intergenic 35.0%
GATTCCCATCAGTATATTCA+TGG - chr1_3:49852722-49852741 Msa0122970:intron 35.0%
TTCCCATCAGTATATTCATG+GGG - chr1_3:49852724-49852743 Msa0122970:intron 35.0%
GGAATAACTTTCTTGAATGG+TGG - chr1_3:49852797-49852816 Msa0122970:intron 35.0%
! TGAAGATTTTCTTTCACGGT+TGG + chr1_3:49852854-49852873 None:intergenic 35.0%
TGTGATTTACTGGAAGTTTG+CGG + chr1_3:49853079-49853098 None:intergenic 35.0%
!! CCAGATTCTAAAACAGCTAT+TGG + chr1_3:49853241-49853260 None:intergenic 35.0%
!!! CCAATAGCTGTTTTAGAATC+TGG - chr1_3:49853238-49853257 Msa0122970:intron 35.0%
CTTGGCTTATTGGAACAATT+TGG - chr1_3:49853262-49853281 Msa0122970:intron 35.0%
GTCCAGATTCAAACACTAAT+AGG - chr1_3:49853337-49853356 Msa0122970:intron 35.0%
! CAAACACTAATAGGTTGAAC+TGG - chr1_3:49853346-49853365 Msa0122970:intron 35.0%
!! TATCTGATTGCTGCTTCTTT+TGG - chr1_3:49853627-49853646 Msa0122970:intron 35.0%
!! TTGCTGCTTCTTTTGGTAAA+AGG - chr1_3:49853634-49853653 Msa0122970:intron 35.0%
TATGTATGCTATGCTTGATC+TGG - chr1_3:49853670-49853689 Msa0122970:CDS 35.0%
GGTTAGTGATTGCAAACTTT+AGG - chr1_3:49853714-49853733 Msa0122970:CDS 35.0%
AAACTTTAGGCCTATGGTTA+TGG - chr1_3:49853727-49853746 Msa0122970:CDS 35.0%
! CTTTAGTTTCTTTAGGCTCA+CGG - chr1_3:49853835-49853854 Msa0122970:CDS 35.0%
TGTCATTCAATTTACAGGTC+TGG - chr1_3:49853888-49853907 Msa0122970:CDS 35.0%
TACAGTTTACATAGGAACCT+TGG + chr1_3:49853919-49853938 None:intergenic 35.0%
TGTATCTCAGAGATTGAATC+TGG - chr1_3:49853941-49853960 Msa0122970:CDS 35.0%
TCAGAGATTGAATCTGGATA+GGG - chr1_3:49853947-49853966 Msa0122970:CDS 35.0%
TAAATTTGAGTCGCGTAGTT+AGG - chr1_3:49853973-49853992 Msa0122970:CDS 35.0%
TCTTTGTATTGCAACTGTAG+AGG - chr1_3:49854012-49854031 Msa0122970:CDS 35.0%
GTGCCAGACATAACAAAATA+TGG + chr1_3:49854045-49854064 None:intergenic 35.0%
CTTGTAATGGTGTTCTTACA+AGG - chr1_3:49854098-49854117 Msa0122970:five_prime_UTR 35.0%
TAGTACACAGGATATACAAG+TGG + chr1_3:49854128-49854147 None:intergenic 35.0%
AAACCCGAAAATTAGTACAC+AGG + chr1_3:49854140-49854159 None:intergenic 35.0%
!!! TACTAATTTTCGGGTTTGTC+TGG - chr1_3:49854143-49854162 Msa0122970:five_prime_UTR 35.0%
CCGCCATGGAAAAATTCAAA+TGG + chr1_3:49846595-49846614 None:intergenic 40.0%
! TTTGAATTTTTCCATGGCGG+GGG - chr1_3:49846595-49846614 Msa0122970:three_prime_UTR 40.0%
! AACAACACAGTTGCTTTCAC+AGG - chr1_3:49846632-49846651 Msa0122970:three_prime_UTR 40.0%
! ACAACACAGTTGCTTTCACA+GGG - chr1_3:49846633-49846652 Msa0122970:three_prime_UTR 40.0%
ACGTGGCAGAAAGAGAAAAA+TGG - chr1_3:49846739-49846758 Msa0122970:intron 40.0%
GCTGGAACTGAAGAAGATTA+AGG - chr1_3:49846862-49846881 Msa0122970:intron 40.0%
AAGAAGATTAAGGGGAAACG+TGG - chr1_3:49846872-49846891 Msa0122970:intron 40.0%
TGATGAAATCAATGCTGCTC+AGG - chr1_3:49846931-49846950 Msa0122970:CDS 40.0%
! TGTTGCTGTTCAATGCATTC+AGG + chr1_3:49846968-49846987 None:intergenic 40.0%
ATGCATTGAACAGCAACAGA+TGG - chr1_3:49846970-49846989 Msa0122970:intron 40.0%
GTAAAAGAAATGACAAGGGC+AGG - chr1_3:49847162-49847181 Msa0122970:intron 40.0%
GCATACCCTGTATTAACAGT+TGG - chr1_3:49847222-49847241 Msa0122970:intron 40.0%
AGCAACTAGACAAGTGAGTT+TGG - chr1_3:49847363-49847382 Msa0122970:intron 40.0%
AACCCAAAACCTTAAGGCAT+TGG - chr1_3:49847398-49847417 Msa0122970:intron 40.0%
! ACCCAAAACCTTAAGGCATT+GGG - chr1_3:49847399-49847418 Msa0122970:intron 40.0%
! ACCCAATGCCTTAAGGTTTT+GGG + chr1_3:49847403-49847422 None:intergenic 40.0%
! AACCCAATGCCTTAAGGTTT+TGG + chr1_3:49847404-49847423 None:intergenic 40.0%
!! ACCTTAAGGCATTGGGTTTA+AGG - chr1_3:49847406-49847425 Msa0122970:intron 40.0%
!! CCTTAAGGCATTGGGTTTAA+GGG - chr1_3:49847407-49847426 Msa0122970:intron 40.0%
ATTGTTCTGTAGCAAGTGAG+AGG + chr1_3:49847434-49847453 None:intergenic 40.0%
TGAAAGAACTTCCACTTGAG+GGG + chr1_3:49847495-49847514 None:intergenic 40.0%
GATGAAAGAACTTCCACTTG+AGG + chr1_3:49847497-49847516 None:intergenic 40.0%
GTTCTTTCATCCACATACAC+TGG - chr1_3:49847506-49847525 Msa0122970:intron 40.0%
AGTATAAGTGCCAGTGTATG+TGG + chr1_3:49847519-49847538 None:intergenic 40.0%
GCTCCTTATATCGAAAGTTC+AGG + chr1_3:49847580-49847599 None:intergenic 40.0%
GAACTTTCGATATAAGGAGC+CGG - chr1_3:49847580-49847599 Msa0122970:CDS 40.0%
! ACCCATTGCCTTAAGGTTTT+AGG + chr1_3:49847723-49847742 None:intergenic 40.0%
! ACCTTAAGGCAATGGGTTTA+TGG - chr1_3:49847726-49847745 Msa0122970:intron 40.0%
TCCATAAACCCATTGCCTTA+AGG + chr1_3:49847730-49847749 None:intergenic 40.0%
! AAGGTATCCTGACTTGAAAG+AGG - chr1_3:49847997-49848016 Msa0122970:intron 40.0%
TTGCAATTGCAAAGCATGCT+TGG - chr1_3:49848057-49848076 Msa0122970:intron 40.0%
! GTGATAATCTGGTTCACTAC+AGG - chr1_3:49848161-49848180 Msa0122970:intron 40.0%
!! TCATGGTCATTGTTGGTTTC+TGG + chr1_3:49848201-49848220 None:intergenic 40.0%
AGAAACCAACAATGACCATG+AGG - chr1_3:49848200-49848219 Msa0122970:intron 40.0%
TGAAGAACAAATGGCTGAGA+AGG - chr1_3:49848278-49848297 Msa0122970:CDS 40.0%
GAGATAGAAGCAAAGAGACA+AGG - chr1_3:49848300-49848319 Msa0122970:CDS 40.0%
ATTGCAAGAAGTGAGACTCT+TGG + chr1_3:49848336-49848355 None:intergenic 40.0%
!!! GTTGCTTTTCTCATGCTTCA+TGG - chr1_3:49848399-49848418 Msa0122970:intron 40.0%
!! TCTTTGGGATGAACATTGCA+GGG - chr1_3:49848577-49848596 Msa0122970:intron 40.0%
!!! CAGTACACACGCTCTTTTTT+AGG + chr1_3:49848642-49848661 None:intergenic 40.0%
! CTAAAAAAGAGCGTGTGTAC+TGG - chr1_3:49848640-49848659 Msa0122970:CDS 40.0%
! AGCATTTTGTACAGCTTCTG+TGG + chr1_3:49848773-49848792 None:intergenic 40.0%
! GAGTTTGAGTTTATCTTCCG+AGG - chr1_3:49848864-49848883 Msa0122970:intron 40.0%
TCTTGACCATTCACGAATCT+CGG + chr1_3:49848964-49848983 None:intergenic 40.0%
ATTCGTGAATGGTCAAGATC+TGG - chr1_3:49848966-49848985 Msa0122970:intron 40.0%
!!! TCACAATCATCATCGGCTTT+TGG + chr1_3:49849026-49849045 None:intergenic 40.0%
GAAGTATGCTTCTCAGTTCA+AGG + chr1_3:49849058-49849077 None:intergenic 40.0%
! AACTCGGAGATGCAATTTTG+TGG + chr1_3:49849080-49849099 None:intergenic 40.0%
CTGACATACACAATAGCACA+AGG - chr1_3:49849201-49849220 Msa0122970:CDS 40.0%
CATACACAATAGCACAAGGA+AGG - chr1_3:49849205-49849224 Msa0122970:CDS 40.0%
AGAACTTCTTATACTGTCCC+AGG - chr1_3:49849252-49849271 Msa0122970:CDS 40.0%
GAACTTCTTATACTGTCCCA+GGG - chr1_3:49849253-49849272 Msa0122970:CDS 40.0%
GCTTGGTATTACGTATCTGA+CGG + chr1_3:49849412-49849431 None:intergenic 40.0%
ACTGTCCGCCAAAAATTAGT+TGG + chr1_3:49849779-49849798 None:intergenic 40.0%
ATAGGACTTTAACCTTGTGC+TGG + chr1_3:49849861-49849880 None:intergenic 40.0%
TGAGAAATTGAGAGACACTG+AGG + chr1_3:49850001-49850020 None:intergenic 40.0%
!! CAAGGGCAACAAAAAGTACT+TGG + chr1_3:49850093-49850112 None:intergenic 40.0%
AATACAACTAGGGGATGCAA+GGG + chr1_3:49850110-49850129 None:intergenic 40.0%
! TCTGAGATGTTGATTGATGC+AGG - chr1_3:49850251-49850270 Msa0122970:CDS 40.0%
! CTGAGATGTTGATTGATGCA+GGG - chr1_3:49850252-49850271 Msa0122970:CDS 40.0%
ATATGAACTCGGCACAATGA+CGG + chr1_3:49850401-49850420 None:intergenic 40.0%
! AGATGTTTTACAGCCAGACA+TGG - chr1_3:49850491-49850510 Msa0122970:intron 40.0%
! GATGTTTTACAGCCAGACAT+GGG - chr1_3:49850492-49850511 Msa0122970:intron 40.0%
CTGCATCTGACATATCACAA+TGG + chr1_3:49850584-49850603 None:intergenic 40.0%
CATGGTGTAACAGCTTACAA+AGG + chr1_3:49850740-49850759 None:intergenic 40.0%
GGCATGTACTTGAAACTACA+AGG + chr1_3:49850772-49850791 None:intergenic 40.0%
ATGAAGCACAGACAAAGAAC+TGG + chr1_3:49851022-49851041 None:intergenic 40.0%
TCATATTGCTGAAGTGAAGC+TGG - chr1_3:49851140-49851159 Msa0122970:intron 40.0%
TGAAGTGAAGCTGGATTCTA+AGG - chr1_3:49851149-49851168 Msa0122970:intron 40.0%
GAAGTGAAGCTGGATTCTAA+GGG - chr1_3:49851150-49851169 Msa0122970:intron 40.0%
TTGCTCGTATGAAGCCTTTA+TGG + chr1_3:49851292-49851311 None:intergenic 40.0%
CGATTTGTGGAAAATGGAAG+TGG - chr1_3:49851321-49851340 Msa0122970:CDS 40.0%
GTTGGGGGAAATTCTTTAGA+CGG - chr1_3:49851408-49851427 Msa0122970:CDS 40.0%
GAGAGAGGATGTACCTAAAT+TGG - chr1_3:49851452-49851471 Msa0122970:CDS 40.0%
!! AGAAGCATTTCAGAGAGTTC+AGG - chr1_3:49851487-49851506 Msa0122970:CDS 40.0%
TTGATGCTATCTCTCCTTGT+CGG - chr1_3:49851697-49851716 Msa0122970:CDS 40.0%
GGATACACATGAGTACTTCT+TGG + chr1_3:49851782-49851801 None:intergenic 40.0%
ATTCAAGATGTACCCAAACC+CGG + chr1_3:49851874-49851893 None:intergenic 40.0%
GTACCGTCATGACATGAATA+AGG - chr1_3:49852078-49852097 Msa0122970:intron 40.0%
AAAACGTCTGATCATGGATG+GGG + chr1_3:49852330-49852349 None:intergenic 40.0%
CGAGCATAAAAAGAGGCTTA+AGG - chr1_3:49852360-49852379 Msa0122970:CDS 40.0%
GCATAAAAAGAGGCTTAAGG+AGG - chr1_3:49852363-49852382 Msa0122970:CDS 40.0%
AGCTTCTGAACAAAAGTCCA+GGG + chr1_3:49852503-49852522 None:intergenic 40.0%
! TGGACTTTTGTTCAGAAGCT+GGG - chr1_3:49852503-49852522 Msa0122970:intron 40.0%
ATACCTTCAGATTTCGGACT+TGG + chr1_3:49852562-49852581 None:intergenic 40.0%
GCCACAAAGTGTATATGTTG+CGG - chr1_3:49852637-49852656 Msa0122970:intron 40.0%
ACCGCAACATATACACTTTG+TGG + chr1_3:49852641-49852660 None:intergenic 40.0%
! ATGTTGCGGTTGTGAGTTTT+AGG - chr1_3:49852651-49852670 Msa0122970:intron 40.0%
GTCCCCATGAATATACTGAT+GGG + chr1_3:49852729-49852748 None:intergenic 40.0%
AGTCCCCATGAATATACTGA+TGG + chr1_3:49852730-49852749 None:intergenic 40.0%
TTCATGGGGACTGATATTCT+TGG - chr1_3:49852738-49852757 Msa0122970:intron 40.0%
TCATGGGGACTGATATTCTT+GGG - chr1_3:49852739-49852758 Msa0122970:intron 40.0%
GACAAAATCAAGTGCAACCT+TGG + chr1_3:49853012-49853031 None:intergenic 40.0%
! AAGCACTCGCCAATATTTTC+AGG + chr1_3:49853038-49853057 None:intergenic 40.0%
TCTGCAGACTTGTGATTTAC+TGG + chr1_3:49853089-49853108 None:intergenic 40.0%
AGTAAATCACAAGTCTGCAG+AGG - chr1_3:49853088-49853107 Msa0122970:intron 40.0%
AACATGACAGTGACATCACT+AGG + chr1_3:49853311-49853330 None:intergenic 40.0%
CGTCTTGATTCTAAACCACA+AGG - chr1_3:49853427-49853446 Msa0122970:CDS 40.0%
GATTGCAAACTTTAGGCCTA+TGG - chr1_3:49853721-49853740 Msa0122970:CDS 40.0%
CTCAGAGATTGAATCTGGAT+AGG - chr1_3:49853946-49853965 Msa0122970:CDS 40.0%
AAACCCATCAGCATCTAGCT+AGG - chr1_3:49846503-49846522 Msa0122970:three_prime_UTR 45.0%
AACCCATCAGCATCTAGCTA+GGG - chr1_3:49846504-49846523 Msa0122970:three_prime_UTR 45.0%
AACCCTAGCTAGATGCTGAT+GGG + chr1_3:49846509-49846528 None:intergenic 45.0%
AAACCCTAGCTAGATGCTGA+TGG + chr1_3:49846510-49846529 None:intergenic 45.0%
! CAACACAGTTGCTTTCACAG+GGG - chr1_3:49846634-49846653 Msa0122970:three_prime_UTR 45.0%
GCATCAACAGAAGCTTCATC+AGG + chr1_3:49846698-49846717 None:intergenic 45.0%
TTTCTGCCACGTTTCTTTGC+CGG + chr1_3:49846731-49846750 None:intergenic 45.0%
AATGGAGAAGGAAGCCGAAA+AGG - chr1_3:49846757-49846776 Msa0122970:intron 45.0%
ATGGAGAAGGAAGCCGAAAA+GGG - chr1_3:49846758-49846777 Msa0122970:intron 45.0%
! TCTCACACTTTCGCCCTTTT+CGG + chr1_3:49846774-49846793 None:intergenic 45.0%
! AAAAGGGCGAAAGTGTGAGA+AGG - chr1_3:49846774-49846793 Msa0122970:intron 45.0%
! TGAGGATTACTTGACGGATG+TGG - chr1_3:49846832-49846851 Msa0122970:intron 45.0%
AGATTAAGGGGAAACGTGGT+AGG - chr1_3:49846876-49846895 Msa0122970:intron 45.0%
GAAACGTGGTAGGAAGAAGA+AGG - chr1_3:49846886-49846905 Msa0122970:intron 45.0%
AGGAAGAAGAAGGTGGCAAT+TGG - chr1_3:49846896-49846915 Msa0122970:intron 45.0%
AAGAAGGTGGCAATTGGTGT+CGG - chr1_3:49846902-49846921 Msa0122970:intron 45.0%
TGAAATCAATGCTGCTCAGG+AGG - chr1_3:49846934-49846953 Msa0122970:CDS 45.0%
GAAATCAATGCTGCTCAGGA+GGG - chr1_3:49846935-49846954 Msa0122970:CDS 45.0%
AAATCAATGCTGCTCAGGAG+GGG - chr1_3:49846936-49846955 Msa0122970:CDS 45.0%
TGAAATGCACGGAATGCAAC+CGG - chr1_3:49847189-49847208 Msa0122970:intron 45.0%
CCCTTAAACCCAATGCCTTA+AGG + chr1_3:49847410-49847429 None:intergenic 45.0%
AAAGAACTTCCACTTGAGGG+GGG + chr1_3:49847493-49847512 None:intergenic 45.0%
GAAAGAACTTCCACTTGAGG+GGG + chr1_3:49847494-49847513 None:intergenic 45.0%
AACGGTGACTTTGACAATGG+CGG + chr1_3:49847546-49847565 None:intergenic 45.0%
TCCAACGGTGACTTTGACAA+TGG + chr1_3:49847549-49847568 None:intergenic 45.0%
CGACAATGGTATCAGAGTCA+GGG + chr1_3:49847622-49847641 None:intergenic 45.0%
CCTGACTCTGATACCATTGT+CGG - chr1_3:49847620-49847639 Msa0122970:CDS 45.0%
CTGACTCTGATACCATTGTC+GGG - chr1_3:49847621-49847640 Msa0122970:CDS 45.0%
AGTCTGGGGATTGTCTACAT+TGG - chr1_3:49847654-49847673 Msa0122970:intron 45.0%
GTCTGGGGATTGTCTACATT+GGG - chr1_3:49847655-49847674 Msa0122970:intron 45.0%
AGCAACCACACAAGTGAGTT+TGG - chr1_3:49847683-49847702 Msa0122970:intron 45.0%
GGTATCCAAACTCACTTGTG+TGG + chr1_3:49847691-49847710 None:intergenic 45.0%
! GTATCCTGACTTGAAAGAGG+AGG - chr1_3:49848000-49848019 Msa0122970:intron 45.0%
! ATGTCCTCCTCTTTCAAGTC+AGG + chr1_3:49848007-49848026 None:intergenic 45.0%
GACATTGCCAAGAAATGTCC+AGG - chr1_3:49848022-49848041 Msa0122970:intron 45.0%
ACAGCATCCTGGACATTTCT+TGG + chr1_3:49848032-49848051 None:intergenic 45.0%
AAGAAATGTCCAGGATGCTG+TGG - chr1_3:49848031-49848050 Msa0122970:intron 45.0%
TTGCAATTACCACAGCATCC+TGG + chr1_3:49848043-49848062 None:intergenic 45.0%
GAACTGACCTTGATAAGTGC+AGG + chr1_3:49848088-49848107 None:intergenic 45.0%
CTCAACCTCATGGTCATTGT+TGG + chr1_3:49848208-49848227 None:intergenic 45.0%
!! GTCTTTGGGATGAACATTGC+AGG - chr1_3:49848576-49848595 Msa0122970:intron 45.0%
! AAAAGAGCGTGTGTACTGGT+AGG - chr1_3:49848644-49848663 Msa0122970:CDS 45.0%
! AAAGAGCGTGTGTACTGGTA+GGG - chr1_3:49848645-49848664 Msa0122970:CDS 45.0%
CTTGACCATTCACGAATCTC+GGG + chr1_3:49848963-49848982 None:intergenic 45.0%
GTGAATGGTCAAGATCTGGA+TGG - chr1_3:49848970-49848989 Msa0122970:intron 45.0%
!!! TCATCATCGGCTTTTGGACA+GGG + chr1_3:49849020-49849039 None:intergenic 45.0%
!!! ATCATCATCGGCTTTTGGAC+AGG + chr1_3:49849021-49849040 None:intergenic 45.0%
GCCGATGATGATTGTGATCA+TGG - chr1_3:49849029-49849048 Msa0122970:intron 45.0%
CTGTGGAGACTTCTGATAGT+AGG - chr1_3:49849147-49849166 Msa0122970:CDS 45.0%
TGACGTAGATTTACTGCCCT+GGG + chr1_3:49849272-49849291 None:intergenic 45.0%
ATGACGTAGATTTACTGCCC+TGG + chr1_3:49849273-49849292 None:intergenic 45.0%
GGCAGTAAATCTACGTCATG+AGG - chr1_3:49849274-49849293 Msa0122970:CDS 45.0%
! TTTCAATGGCACTGGAGCAA+AGG - chr1_3:49849308-49849327 Msa0122970:CDS 45.0%
! TTCAATGGCACTGGAGCAAA+GGG - chr1_3:49849309-49849328 Msa0122970:CDS 45.0%
AATGCACGCCACATGACAAA+CGG + chr1_3:49849389-49849408 None:intergenic 45.0%
!! TGATTGCTTGGATTGGTGTG+AGG - chr1_3:49849460-49849479 Msa0122970:CDS 45.0%
GAATACAACTAGGGGATGCA+AGG + chr1_3:49850111-49850130 None:intergenic 45.0%
TATGAACTCGGCACAATGAC+GGG + chr1_3:49850400-49850419 None:intergenic 45.0%
CGGCAAGGAAGATATGAACT+CGG + chr1_3:49850412-49850431 None:intergenic 45.0%
CTTTAGGCAACTTCACAGCA+AGG + chr1_3:49850473-49850492 None:intergenic 45.0%
!!! TATGTTTTTGGGCCCATGTC+TGG + chr1_3:49850507-49850526 None:intergenic 45.0%
! TATGGATTTGCTCAGGAGCT+TGG - chr1_3:49850534-49850553 Msa0122970:intron 45.0%
! ATGGATTTGCTCAGGAGCTT+GGG - chr1_3:49850535-49850554 Msa0122970:intron 45.0%
ACTACAAGGCTAACAGCTCA+TGG + chr1_3:49850758-49850777 None:intergenic 45.0%
GGGAGCTACATGGTGATAAT+CGG - chr1_3:49851223-49851242 Msa0122970:CDS 45.0%
GGAGCTACATGGTGATAATC+GGG - chr1_3:49851224-49851243 Msa0122970:CDS 45.0%
CTACATGGTGATAATCGGGA+CGG - chr1_3:49851228-49851247 Msa0122970:CDS 45.0%
ATTCTTTAGACGGTGCTCTC+TGG - chr1_3:49851418-49851437 Msa0122970:CDS 45.0%
TTCTTTAGACGGTGCTCTCT+GGG - chr1_3:49851419-49851438 Msa0122970:CDS 45.0%
!! GTGCTCTCTGGGATATCTTT+CGG - chr1_3:49851430-49851449 Msa0122970:CDS 45.0%
!! CCTGCTTTAAAGGAGAGCAA+TGG + chr1_3:49851518-49851537 None:intergenic 45.0%
!! CCATTGCTCTCCTTTAAAGC+AGG - chr1_3:49851515-49851534 Msa0122970:CDS 45.0%
AATTGTGTGTGTGTCCGACA+AGG + chr1_3:49851714-49851733 None:intergenic 45.0%
ACAGAGTTGTGGGTACATAC+TGG - chr1_3:49851753-49851772 Msa0122970:CDS 45.0%
TGGTACTTACACACGAGTAC+CGG - chr1_3:49851852-49851871 Msa0122970:CDS 45.0%
!! AGATACCAGCTCTGAAGCAT+GGG + chr1_3:49851905-49851924 None:intergenic 45.0%
!! AAGATACCAGCTCTGAAGCA+TGG + chr1_3:49851906-49851925 None:intergenic 45.0%
TTCAGAGCTGGTATCTTACC+TGG - chr1_3:49851909-49851928 Msa0122970:intron 45.0%
TCAGAGCTGGTATCTTACCT+GGG - chr1_3:49851910-49851929 Msa0122970:intron 45.0%
TACATGACAGTCTTTGGGTC+AGG - chr1_3:49851960-49851979 Msa0122970:intron 45.0%
ACATGACAGTCTTTGGGTCA+GGG - chr1_3:49851961-49851980 Msa0122970:intron 45.0%
AGTCTCCCACCATAAGTTCA+GGG - chr1_3:49852017-49852036 Msa0122970:CDS 45.0%
AAAGTTCACTCGACAGACGA+AGG - chr1_3:49852206-49852225 Msa0122970:intron 45.0%
AAGTTCACTCGACAGACGAA+GGG - chr1_3:49852207-49852226 Msa0122970:intron 45.0%
TAGATGGCTAGGAAGACTGA+TGG - chr1_3:49852241-49852260 Msa0122970:intron 45.0%
AAGAGGCTTAAGGAGGAGTA+TGG - chr1_3:49852370-49852389 Msa0122970:CDS 45.0%
GACTTGTAGGAATTGAACCC+TGG - chr1_3:49852483-49852502 Msa0122970:intron 45.0%
CAGCTTCTGAACAAAAGTCC+AGG + chr1_3:49852504-49852523 None:intergenic 45.0%
! CTGGACTTTTGTTCAGAAGC+TGG - chr1_3:49852502-49852521 Msa0122970:intron 45.0%
!!! GATGCTGTTTTCATTCCAGC+TGG - chr1_3:49852527-49852546 Msa0122970:intron 45.0%
!! TTCAGATTTCGGACTTGGTG+GGG + chr1_3:49852557-49852576 None:intergenic 45.0%
! CTTCAGATTTCGGACTTGGT+GGG + chr1_3:49852558-49852577 None:intergenic 45.0%
CTGATGGGAATCACAGTCTT+GGG + chr1_3:49852714-49852733 None:intergenic 45.0%
ACTGATGGGAATCACAGTCT+TGG + chr1_3:49852715-49852734 None:intergenic 45.0%
! CTTGGTGCATGACTGCAAAA+CGG + chr1_3:49852994-49853013 None:intergenic 45.0%
CAAGTCTGCAGAGGACAAAT+TGG - chr1_3:49853097-49853116 Msa0122970:intron 45.0%
!!! GCTGTTTTAGAATCTGGGCT+TGG - chr1_3:49853244-49853263 Msa0122970:intron 45.0%
AGAATCTGGGCTTGGCTTAT+TGG - chr1_3:49853252-49853271 Msa0122970:intron 45.0%
GTGACTTAGTTAGCACCTTG+TGG + chr1_3:49853445-49853464 None:intergenic 45.0%
TTACAGGTCTGGAGAAACCA+AGG - chr1_3:49853899-49853918 Msa0122970:CDS 45.0%
GTAGTTAGGTGTGGTGATCT+TGG - chr1_3:49853987-49854006 Msa0122970:CDS 45.0%
AGCTTCATCAGGAGCAGCTA+TGG + chr1_3:49846687-49846706 None:intergenic 50.0%
! GGATTACTTGACGGATGTGG+AGG - chr1_3:49846835-49846854 Msa0122970:intron 50.0%
! TTACTTGACGGATGTGGAGG+AGG - chr1_3:49846838-49846857 Msa0122970:intron 50.0%
ACGTGGTAGGAAGAAGAAGG+TGG - chr1_3:49846889-49846908 Msa0122970:intron 50.0%
AATCAATGCTGCTCAGGAGG+GGG - chr1_3:49846937-49846956 Msa0122970:CDS 50.0%
TTATCTTGTGTGGGGTCACG+AGG - chr1_3:49847309-49847328 Msa0122970:intron 50.0%
TATCTTGTGTGGGGTCACGA+GGG - chr1_3:49847310-49847329 Msa0122970:intron 50.0%
! TAGTTGCTCTGAGCCCAATG+GGG + chr1_3:49847351-49847370 None:intergenic 50.0%
! CTAGTTGCTCTGAGCCCAAT+GGG + chr1_3:49847352-49847371 None:intergenic 50.0%
! TCTAGTTGCTCTGAGCCCAA+TGG + chr1_3:49847353-49847372 None:intergenic 50.0%
AAGAACTTCCACTTGAGGGG+GGG + chr1_3:49847492-49847511 None:intergenic 50.0%
GCCATTGTCAAAGTCACCGT+TGG - chr1_3:49847545-49847564 Msa0122970:CDS 50.0%
GTTCAGGTCATGGGTTCCAA+CGG + chr1_3:49847564-49847583 None:intergenic 50.0%
TCAGAGTCAGGGTTCGACAA+GGG + chr1_3:49847611-49847630 None:intergenic 50.0%
ATCAGAGTCAGGGTTCGACA+AGG + chr1_3:49847612-49847631 None:intergenic 50.0%
CCGACAATGGTATCAGAGTC+AGG + chr1_3:49847623-49847642 None:intergenic 50.0%
TACCATTGTCGGGTCATGAG+AGG - chr1_3:49847631-49847650 Msa0122970:intron 50.0%
! TGAGACTGGTTCAACAGCTG+AGG - chr1_3:49847839-49847858 Msa0122970:intron 50.0%
GGACTCACCTGCACTTATCA+AGG - chr1_3:49848078-49848097 Msa0122970:CDS 50.0%
ACTTGGAGAGCTCAACCTCA+TGG + chr1_3:49848218-49848237 None:intergenic 50.0%
GCAAGAAGTGAGACTCTTGG+AGG + chr1_3:49848333-49848352 None:intergenic 50.0%
! AAGAGCGTGTGTACTGGTAG+GGG - chr1_3:49848646-49848665 Msa0122970:CDS 50.0%
CATGCAGATAATCACGCCCT+CGG + chr1_3:49848884-49848903 None:intergenic 50.0%
CCATTCACGAATCTCGGGTT+GGG + chr1_3:49848958-49848977 None:intergenic 50.0%
ACCATTCACGAATCTCGGGT+TGG + chr1_3:49848959-49848978 None:intergenic 50.0%
! TCAATGGCACTGGAGCAAAG+GGG - chr1_3:49849310-49849329 Msa0122970:CDS 50.0%
AGACTAGATGGTCTGCTCTC+TGG - chr1_3:49849821-49849840 Msa0122970:intron 50.0%
GACTAGATGGTCTGCTCTCT+GGG - chr1_3:49849822-49849841 Msa0122970:intron 50.0%
CATGAAGAGTGACCAGCACA+AGG - chr1_3:49849846-49849865 Msa0122970:intron 50.0%
ATGAACTCGGCACAATGACG+GGG + chr1_3:49850399-49850418 None:intergenic 50.0%
AGCAGATCCATTGTCCTTCC+TGG - chr1_3:49850996-49851015 Msa0122970:intron 50.0%
AGACAAAGAACTGGCCAGGA+AGG + chr1_3:49851013-49851032 None:intergenic 50.0%
AGCACCTTGAGCAAGACAAG+AGG - chr1_3:49851202-49851221 Msa0122970:CDS 50.0%
GCACCTTGAGCAAGACAAGA+GGG - chr1_3:49851203-49851222 Msa0122970:CDS 50.0%
CAAGACAAGAGGGAGCTACA+TGG - chr1_3:49851213-49851232 Msa0122970:CDS 50.0%
CTGGGATATCTTTCGGAGAG+AGG - chr1_3:49851437-49851456 Msa0122970:CDS 50.0%
TGTCGGTGCAACAGAGTTGT+GGG - chr1_3:49851743-49851762 Msa0122970:CDS 50.0%
GGTACTTACACACGAGTACC+GGG - chr1_3:49851853-49851872 Msa0122970:CDS 50.0%
!! TTACACACGAGTACCGGGTT+TGG - chr1_3:49851858-49851877 Msa0122970:CDS 50.0%
!! TACACACGAGTACCGGGTTT+GGG - chr1_3:49851859-49851878 Msa0122970:CDS 50.0%
CAGTCTTTGGGTCAGGGATA+TGG - chr1_3:49851967-49851986 Msa0122970:intron 50.0%
GAGACTGAGTGAATGCAGGT+GGG + chr1_3:49852003-49852022 None:intergenic 50.0%
CAGTCTCCCACCATAAGTTC+AGG - chr1_3:49852016-49852035 Msa0122970:CDS 50.0%
GTCTCCCACCATAAGTTCAG+GGG - chr1_3:49852018-49852037 Msa0122970:CDS 50.0%
AAGGGCCTGCTGTATGTAGA+TGG - chr1_3:49852225-49852244 Msa0122970:intron 50.0%
CCTAGCCATCTACATACAGC+AGG + chr1_3:49852233-49852252 None:intergenic 50.0%
CCTGCTGTATGTAGATGGCT+AGG - chr1_3:49852230-49852249 Msa0122970:intron 50.0%
CCTTCAGATTTCGGACTTGG+TGG + chr1_3:49852559-49852578 None:intergenic 50.0%
CCACCAAGTCCGAAATCTGA+AGG - chr1_3:49852556-49852575 Msa0122970:CDS 50.0%
! CGTTTTGCAGTCATGCACCA+AGG - chr1_3:49852992-49853011 Msa0122970:intron 50.0%
CGAGTGCTTTCGTTTGACAG+AGG - chr1_3:49853049-49853068 Msa0122970:intron 50.0%
GTCTGCAGAGGACAAATTGG+AGG - chr1_3:49853100-49853119 Msa0122970:intron 50.0%
GCTTGATCTGGTCGAGAAGT+TGG - chr1_3:49853682-49853701 Msa0122970:CDS 50.0%
TGATCTGGTCGAGAAGTTGG+AGG - chr1_3:49853685-49853704 Msa0122970:CDS 50.0%
TCGAGAAGTTGGAGGAAGCA+AGG - chr1_3:49853693-49853712 Msa0122970:CDS 50.0%
TTGAGTCGCGTAGTTAGGTG+TGG - chr1_3:49853978-49853997 Msa0122970:CDS 50.0%
GTTATGTCTGGCACACCTTG+AGG - chr1_3:49854051-49854070 Msa0122970:five_prime_UTR 50.0%
ACGTTTCTTTGCCGGAGGAG+CGG + chr1_3:49846723-49846742 None:intergenic 55.0%
TGAGAAGGAGTGAGCGTGCT+AGG - chr1_3:49846789-49846808 Msa0122970:intron 55.0%
GGGCAGGGTTGTGAAATGCA+CGG - chr1_3:49847178-49847197 Msa0122970:intron 55.0%
ATCTTGTGTGGGGTCACGAG+GGG - chr1_3:49847311-49847330 Msa0122970:intron 55.0%
! AGTTGCTCTGAGCCCAATGG+GGG + chr1_3:49847350-49847369 None:intergenic 55.0%
CATTTATGCCCCCCCTCAAG+TGG - chr1_3:49847481-49847500 Msa0122970:intron 55.0%
GGGTTCGACAAGGGATCAAC+CGG + chr1_3:49847602-49847621 None:intergenic 55.0%
CTCCTCTCATGACCCGACAA+TGG + chr1_3:49847636-49847655 None:intergenic 55.0%
TCGGGTCATGAGAGGAGTCT+GGG - chr1_3:49847639-49847658 Msa0122970:intron 55.0%
AAGGTTGGGCACTCTGTGAG+AGG + chr1_3:49847754-49847773 None:intergenic 55.0%
! GACTGGTTCAACAGCTGAGG+AGG - chr1_3:49847842-49847861 Msa0122970:intron 55.0%
CACGAAGCTCGCAGCAACAA+AGG + chr1_3:49848812-49848831 None:intergenic 55.0%
CTTTGTTGCTGCGAGCTTCG+TGG - chr1_3:49848810-49848829 Msa0122970:intron 55.0%
! CTTCGTGGTGGGAAGCTTCT+AGG - chr1_3:49848825-49848844 Msa0122970:intron 55.0%
! CGAGGGCGTGATTATCTGCA+TGG - chr1_3:49848882-49848901 Msa0122970:intron 55.0%
GGGCGTGATTATCTGCATGG+TGG - chr1_3:49848885-49848904 Msa0122970:intron 55.0%
CCCAACCCGAGATTCGTGAA+TGG - chr1_3:49848955-49848974 Msa0122970:intron 55.0%
! GGATGGCTTGCAGACAGTGA+TGG - chr1_3:49848987-49849006 Msa0122970:intron 55.0%
GCTGGGAACCGTTTGTCATG+TGG - chr1_3:49849378-49849397 Msa0122970:CDS 55.0%
!! CTCGCCTGGACTGGCTTAAT+TGG - chr1_3:49850316-49850335 Msa0122970:CDS 55.0%
GAGGCCAATTAAGCCAGTCC+AGG + chr1_3:49850323-49850342 None:intergenic 55.0%
!! GGACTGGCTTAATTGGCCTC+AGG - chr1_3:49850323-49850342 Msa0122970:CDS 55.0%
! GATTTGCTCAGGAGCTTGGG+CGG - chr1_3:49850538-49850557 Msa0122970:intron 55.0%
ATTTGCTCAGGAGCTTGGGC+GGG - chr1_3:49850539-49850558 Msa0122970:intron 55.0%
GAACTGGCCAGGAAGGACAA+TGG + chr1_3:49851006-49851025 None:intergenic 55.0%
GCACAGACAAAGAACTGGCC+AGG + chr1_3:49851017-49851036 None:intergenic 55.0%
GCTCCCTCTTGTCTTGCTCA+AGG + chr1_3:49851209-49851228 None:intergenic 55.0%
! GTGTCGGTGCAACAGAGTTG+TGG - chr1_3:49851742-49851761 Msa0122970:CDS 55.0%
GGAGACTGAGTGAATGCAGG+TGG + chr1_3:49852004-49852023 None:intergenic 55.0%
GTGGGAGACTGAGTGAATGC+AGG + chr1_3:49852007-49852026 None:intergenic 55.0%
GCAGCCCCTGAACTTATGGT+GGG + chr1_3:49852025-49852044 None:intergenic 55.0%
AGCAGCCCCTGAACTTATGG+TGG + chr1_3:49852026-49852045 None:intergenic 55.0%
ACCATAAGTTCAGGGGCTGC+TGG - chr1_3:49852025-49852044 Msa0122970:CDS 55.0%
ACCAGCAGCCCCTGAACTTA+TGG + chr1_3:49852029-49852048 None:intergenic 55.0%
GTTGTCTTCTTCCCCCGCCA+TGG + chr1_3:49846609-49846628 None:intergenic 60.0%
TGTTGATGCTGCCGCTCCTC+CGG - chr1_3:49846709-49846728 Msa0122970:exon 60.0%
GCTCCTCCGGCAAAGAAACG+TGG - chr1_3:49846722-49846741 Msa0122970:intron 60.0%
CTGCCACGTTTCTTTGCCGG+AGG + chr1_3:49846728-49846747 None:intergenic 60.0%
GTCGGGTCATGAGAGGAGTC+TGG - chr1_3:49847638-49847657 Msa0122970:intron 60.0%
CGGGTCATGAGAGGAGTCTG+GGG - chr1_3:49847640-49847659 Msa0122970:intron 60.0%
TGTTGCTGCGAGCTTCGTGG+TGG - chr1_3:49848813-49848832 Msa0122970:intron 60.0%
GTTGCTGCGAGCTTCGTGGT+GGG - chr1_3:49848814-49848833 Msa0122970:intron 60.0%
! CGTGGTGGGAAGCTTCTAGG+TGG - chr1_3:49848828-49848847 Msa0122970:intron 60.0%
TGGGTACACAAAGGCTCGCC+TGG - chr1_3:49850302-49850321 Msa0122970:CDS 60.0%
ACACAAAGGCTCGCCTGGAC+TGG - chr1_3:49850307-49850326 Msa0122970:CDS 60.0%
TTTGCTCAGGAGCTTGGGCG+GGG - chr1_3:49850540-49850559 Msa0122970:intron 60.0%
GGAGTCCCATGCTTCAGAGC+TGG - chr1_3:49851897-49851916 Msa0122970:intron 60.0%
CTGAGCTGGAGATAGAGCCC+AGG + chr1_3:49851930-49851949 None:intergenic 60.0%
! ACTTGGTGGGGACAACCAGC+TGG + chr1_3:49852545-49852564 None:intergenic 60.0%
GACGGATGTGGAGGAGGAGC+TGG - chr1_3:49846844-49846863 Msa0122970:intron 65.0%
AGCCTTGGGACCACCCCCAT+TGG - chr1_3:49847334-49847353 Msa0122970:intron 65.0%
GCCTTGGGACCACCCCCATT+GGG - chr1_3:49847335-49847354 Msa0122970:intron 65.0%
! TGCTCTGAGCCCAATGGGGG+TGG + chr1_3:49847347-49847366 None:intergenic 65.0%
TGGGGTCACGAGGGGAGCCT+TGG - chr1_3:49847319-49847338 Msa0122970:intron 70.0%
GGGGTCACGAGGGGAGCCTT+GGG - chr1_3:49847320-49847339 Msa0122970:intron 70.0%
GCCCAATGGGGGTGGTCCCA+AGG + chr1_3:49847339-49847358 None:intergenic 70.0%
!! TCGGGTTGGGCAGCAGCACG+AGG + chr1_3:49848945-49848964 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 49846387 49854256 49846387 ID=Msa0122970;Name=Msa0122970
chr1_3 mRNA 49846387 49854256 49846387 ID=Msa0122970-mRNA-1;Parent=Msa0122970;Name=Msa0122970-mRNA-1;_AED=0.04;_eAED=0.04;_QI=221|0.35|0.33|0.86|1|1|15|324|943
chr1_3 exon 49846387 49846738 49846387 ID=Msa0122970-mRNA-1:exon:15190;Parent=Msa0122970-mRNA-1
chr1_3 exon 49846929 49846987 49846929 ID=Msa0122970-mRNA-1:exon:15189;Parent=Msa0122970-mRNA-1
chr1_3 exon 49847522 49847641 49847522 ID=Msa0122970-mRNA-1:exon:15188;Parent=Msa0122970-mRNA-1
chr1_3 exon 49848066 49848151 49848066 ID=Msa0122970-mRNA-1:exon:15187;Parent=Msa0122970-mRNA-1
chr1_3 exon 49848252 49848324 49848252 ID=Msa0122970-mRNA-1:exon:15186;Parent=Msa0122970-mRNA-1
chr1_3 exon 49848408 49848433 49848408 ID=Msa0122970-mRNA-1:exon:15185;Parent=Msa0122970-mRNA-1
chr1_3 exon 49848597 49848729 49848597 ID=Msa0122970-mRNA-1:exon:15184;Parent=Msa0122970-mRNA-1
chr1_3 exon 49849107 49849517 49849107 ID=Msa0122970-mRNA-1:exon:15183;Parent=Msa0122970-mRNA-1
chr1_3 exon 49850041 49850370 49850041 ID=Msa0122970-mRNA-1:exon:15182;Parent=Msa0122970-mRNA-1
chr1_3 exon 49851162 49851903 49851162 ID=Msa0122970-mRNA-1:exon:15181;Parent=Msa0122970-mRNA-1
chr1_3 exon 49851982 49852045 49851982 ID=Msa0122970-mRNA-1:exon:15180;Parent=Msa0122970-mRNA-1
chr1_3 exon 49852322 49852460 49852322 ID=Msa0122970-mRNA-1:exon:15179;Parent=Msa0122970-mRNA-1
chr1_3 exon 49852544 49852643 49852544 ID=Msa0122970-mRNA-1:exon:15178;Parent=Msa0122970-mRNA-1
chr1_3 exon 49853400 49853536 49853400 ID=Msa0122970-mRNA-1:exon:15177;Parent=Msa0122970-mRNA-1
chr1_3 exon 49853652 49854256 49853652 ID=Msa0122970-mRNA-1:exon:15176;Parent=Msa0122970-mRNA-1
chr1_3 five_prime_UTR 49854036 49854256 49854036 ID=Msa0122970-mRNA-1:five_prime_utr;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49853652 49854035 49853652 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49853400 49853536 49853400 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49852544 49852643 49852544 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49852322 49852460 49852322 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49851982 49852045 49851982 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49851162 49851903 49851162 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49850041 49850370 49850041 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49849107 49849517 49849107 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49848597 49848729 49848597 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49848408 49848433 49848408 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49848252 49848324 49848252 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49848066 49848151 49848066 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49847522 49847641 49847522 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49846929 49846987 49846929 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 CDS 49846711 49846738 49846711 ID=Msa0122970-mRNA-1:cds;Parent=Msa0122970-mRNA-1
chr1_3 three_prime_UTR 49846387 49846710 49846387 ID=Msa0122970-mRNA-1:three_prime_utr;Parent=Msa0122970-mRNA-1
Gene Sequence

>Msa0122970

ATGGCGGGGGAAGAAGACAACAACAACAACACAGTTGCTTTCACAGGGGAAGAATCCATTCCTGATAATCAAGAAACCATAGCTGCTCCTGATGAAGCTTCTGTTGATGCTGCCGCTCCTCCGGCAAAGAAACGTGGCAGAAAGAGAAAAATGGAGAAGGAAGCCGAAAAGGGCGAAAGTGTGAGAAGGAGTGAGCGTGCTAGGAAGAATAGTAGATCGTTGAATGAGGATTACTTGACGGATGTGGAGGAGGAGCTGGAACTGAAGAAGATTAAGGGGAAACGTGGTAGGAAGAAGAAGGTGGCAATTGGTGTCGGTGTTTCTGATGAAATCAATGCTGCTCAGGAGGGGGAGAAACCTGAATGCATTGAACAGCAACAGATGGGGATTGAAGATGTGTCCTTATTGGTCTGTAATAAGGACACTAATTGCCATCAATGTAAAAGAAATGACAAGGGCAGGGTTGTGAAATGCACGGAATGCAACCGGAAGAAATTTTGCATACCCTGTATTAACAGTTGGTATCCTGACTTGAAAGAGGAGGACATTGCCAAGAAATGTCCAGGATGCTGTGGTAATTGCAATTGCAAAGCATGCTTGGACTCACCTGCACTTATCAAGGCAATTAAAGAGAAGCCAGAAACCAACAATGACCATGAGGTTGAGCTCTCCAAGTATATGCTGAAAATACTTCTTCCGTATTTAAGACGATTGGATGAAGAACAAATGGCTGAGAAGGAGATAGAAGCAAAGAGACAAGGGATCTCACGTTCTGAGCTAAAAATAAAAGCCGCAGATATCCCTAAAAAAGAGCGTGTGTACTGTGACAACTGCAAAACGTCAATATTTGACTACCACAGAAGCTGTACAAAATGCTCTTTTGACATTTGTCTCCTTTGTTGCTGCGAGCTTCGTGGTGGGAAGCTTCTAGGTGGTGCAGATCCAATCGAGTTTGAGTTTATCTTCCGAGGGCGTGATTATCTGCATGGTGGAAATGATAATGAAGAGAGAGTAAATGAAAGTGAACCTCGTGCTGCTGCCCAACCCGAGATTCGTGAATGGTCAAGATCTGGATGGCTTGCAGACAGTGATGGTAGCATTCCCTGTCCAAAAGCCGATGATGATTGTGATCATGGTTTCCTTGAACTGAGAAGCATACTTCCACAAAATTGCATCTCCGAGTTAGTATGTAAAGCAAAAGAACATGAAGAAACAATTAAGCTTCAAGTTGCTGTGGAGACTTCTGATAGTAGGTGTTCTTGTTTGAAGCCTGTTTTGAATGCATCTGACATACACAATAGCACAAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGAGAACTTCTTATACTGTCCCAGGGCAGTAAATCTACGTCATGAGGATTTAAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTATAATTGTCAGCAATGTACTTGAATGTACATCAGGTTTAAGCTGGGAACCGTTTGTCATGTGGCGTGCATTCCGTCAGATACGTAATACCAAGCAAAAAACACTTTTGGATGTGAAAACTATTGATTGCTTGGATTGGTGTGAGGGAGATCTTAATTTGCACCAATTCTTTACTGGGTACACAAAGGCTCGCCTGGACTGGCTTAATTGGCCTCAGGTTTTGAAACTGAAAGATTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCCCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTTCAAAGAATATACAGATCCTTTCAATGGTGTTCTAAACCTTGCTGTGAAGTTGCCTAAAGATGTTTTACAGCCAGACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCAGATGCAGTAAATGTGTTGACTCATATTGCTGAAGTGAAGCTGGATTCTAAGGGCATTAATGCCATTAAAAAACTGACACAAAAGCACCTTGAGCAAGACAAGAGGGAGCTACATGGTGATAATCGGGACGGAGAGCCCAAGATTGACATGCTTGATAATTCATCTTCTTCCATAAAGGCTTCATACGAGCAAAATAGTGTTCGATTTGTGGAAAATGGAAGTGGAATATGTGATGAAAAGGTGGTTGATCCAGAGCTCAAAGAAGTTGATAAAGAAAATAGTTTATTGGTTGGGGGAAATTCTTTAGACGGTGCTCTCTGGGATATCTTTCGGAGAGAGGATGTACCTAAATTGGAAGAATATTTAAAGAAGCATTTCAGAGAGTTCAGGCATGTCCATTGCTCTCCTTTAAAGCAGAGCTGGTATCTTACCTGGGCTCTATCTCCAGCTCAGTTTATTGTTATACATGACAGTCTTTGGGTCAGGGATATGGAGATAAATCACCCACCTGCATTCACTCAGTCTCCCACCATAAGTTCAGGGGCTGCTGTTCACTCGACAGACGAAGGGCCTGCTGTTGTTCACCCCATCCATGATCAGACGTTTTATTTGACTATCGAGCATAAAAAGAGGCTTAAGGAGGAGTATGGAATTGAACCCTGGACTTTTGTTCAGAAGCTGGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTCCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATATTGGCGAGTGCTTTCGTTTGACAGAGGAATTCCGCAAACTTCCAGTAAATCACAAGTCTGCAGAGGACAAATTGGAGGTGAAGAAAATGATTATGTATGCTATGCTTGATCTGGTCGAGAAGTTGGAGGAAGCAAGGTCTGGAGAAACCAAGGTTCCTATGTAA
Protein sequence

>Msa0122970

MAGEEDNNNNTVAFTGEESIPDNQETIAAPDEASVDAAAPPAKKRGRKRKMEKEAEKGESVRRSERARKNSRSLNEDYLTDVEEELELKKIKGKRGRKKKVAIGVGVSDEINAAQEGEKPECIEQQQMGIEDVSLLVCNKDTNCHQCKRNDKGRVVKCTECNRKKFCIPCINSWYPDLKEEDIAKKCPGCCGNCNCKACLDSPALIKAIKEKPETNNDHEVELSKYMLKILLPYLRRLDEEQMAEKEIEAKRQGISRSELKIKAADIPKKERVYCDNCKTSIFDYHRSCTKCSFDICLLCCCELRGGKLLGGADPIEFEFIFRGRDYLHGGNDNEERVNESEPRAAAQPEIREWSRSGWLADSDGSIPCPKADDDCDHGFLELRSILPQNCISELVCKAKEHEETIKLQVAVETSDSRCSCLKPVLNASDIHNSTRKAASREDSSENFLYCPRAVNLRHEDLRHFQWHWSKGEPIIVSNVLECTSGLSWEPFVMWRAFRQIRNTKQKTLLDVKTIDCLDWCEGDLNLHQFFTGYTKARLDWLNWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPFKEYTDPFNGVLNLAVKLPKDVLQPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAEVKLDSKGINAIKKLTQKHLEQDKRELHGDNRDGEPKIDMLDNSSSSIKASYEQNSVRFVENGSGICDEKVVDPELKEVDKENSLLVGGNSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKQSWYLTWALSPAQFIVIHDSLWVRDMEINHPPAFTQSPTISSGAAVHSTDEGPAVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENIGECFRLTEEFRKLPVNHKSAEDKLEVKKMIMYAMLDLVEKLEEARSGETKVPM*