Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986030 | XP_039682769.1 | 87.302 | 63 | 7 | 1 | 1 | 62 | 53 | 115 | 5.13e-25 | 107 |
| Msa0986030 | XP_039682769.1 | 90.000 | 90 | 9 | 0 | 192 | 281 | 34 | 123 | 8.19e-49 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986030 | G7KIZ2 | 66.434 | 143 | 29 | 4 | 141 | 281 | 334 | 459 | 8.69e-46 | 169 |
| Msa0986030 | G7KIZ2 | 87.302 | 63 | 7 | 1 | 1 | 62 | 389 | 451 | 1.93e-22 | 106 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0986030 | 0.813376 | 2.641397e-51 | -8.615850e-47 |
| Msa0055450 | Msa0986030 | 0.803197 | 3.910371e-49 | -8.615850e-47 |
| Msa0157290 | Msa0986030 | 0.813379 | 2.637411e-51 | -8.615850e-47 |
| Msa0203030 | Msa0986030 | 0.814910 | 1.210856e-51 | -8.615850e-47 |
| Msa0212150 | Msa0986030 | 0.836689 | 8.076918e-57 | -8.615850e-47 |
| Msa0237230 | Msa0986030 | 0.808217 | 3.452227e-50 | -8.615850e-47 |
| Msa0385390 | Msa0986030 | 0.806555 | 7.772324e-50 | -8.615850e-47 |
| Msa0986030 | Msa0999360 | 0.837626 | 4.651489e-57 | -8.615850e-47 |
| Msa0986030 | Msa0999410 | 0.832516 | 9.041473e-56 | -8.615850e-47 |
| Msa0986030 | Msa1190400 | 0.809411 | 1.917667e-50 | -8.615850e-47 |
| Msa0986030 | Msa1228190 | 0.810104 | 1.360451e-50 | -8.615850e-47 |
| Msa0252770 | Msa0986030 | 0.827818 | 1.268165e-54 | -8.615850e-47 |
| Msa0276740 | Msa0986030 | 0.802617 | 5.152108e-49 | -8.615850e-47 |
| Msa0289920 | Msa0986030 | 0.808247 | 3.401769e-50 | -8.615850e-47 |
| Msa0316680 | Msa0986030 | 0.802027 | 6.815764e-49 | -8.615850e-47 |
| Msa0322840 | Msa0986030 | 0.805312 | 1.418288e-49 | -8.615850e-47 |
| Msa0329620 | Msa0986030 | 0.812603 | 3.901249e-51 | -8.615850e-47 |
| Msa0535040 | Msa0986030 | 0.825259 | 5.168784e-54 | -8.615850e-47 |
| Msa0591790 | Msa0986030 | 0.805183 | 1.509937e-49 | -8.615850e-47 |
| Msa0880140 | Msa0986030 | 0.812889 | 3.378367e-51 | -8.615850e-47 |
| Msa0880650 | Msa0986030 | 0.857561 | 1.500687e-62 | -8.615850e-47 |
| Msa0884040 | Msa0986030 | 0.825783 | 3.882432e-54 | -8.615850e-47 |
| Msa0895790 | Msa0986030 | 0.809467 | 1.865051e-50 | -8.615850e-47 |
| Msa0909120 | Msa0986030 | 0.812183 | 4.819034e-51 | -8.615850e-47 |
| Msa0911540 | Msa0986030 | 0.843753 | 1.153964e-58 | -8.615850e-47 |
| Msa0961770 | Msa0986030 | 0.839107 | 1.930662e-57 | -8.615850e-47 |
| Msa0964840 | Msa0986030 | 0.808940 | 2.419233e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0986030 | MtrunA17_Chr6g0464491 | 57.333 | 150 | 47 | 5 | 144 | 282 | 1035 | 1178 | 9.04e-39 | 144 |
| Msa0986030 | MtrunA17_Chr6g0464491 | 76.190 | 63 | 14 | 1 | 1 | 62 | 1107 | 1169 | 4.64e-21 | 93.2 |
| Msa0986030 | MtrunA17_Chr6g0464491 | 43.662 | 142 | 28 | 3 | 86 | 199 | 37 | 154 | 1.57e-18 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTTGATTGTCTTCAATT+TGG | 0.168329 | 6_4:-33585643 | None:intergenic |
| AACATTCAATTTGTCTTTAT+CGG | 0.213725 | 6_4:-33585714 | None:intergenic |
| GATGGTGAGTCCAACTTCTT+AGG | 0.228653 | 6_4:-33587251 | None:intergenic |
| TTCACTTCCTCGTCTCCTTC+AGG | 0.307179 | 6_4:-33586665 | None:intergenic |
| TTTCACTTCCTCGTCTCCTT+CGG | 0.318519 | 6_4:-33584871 | None:intergenic |
| CTTGATTCCATTTCAATAGT+TGG | 0.319101 | 6_4:-33584906 | None:intergenic |
| TTCACTTCCTCGTCTCCTTC+GGG | 0.320200 | 6_4:-33584870 | None:intergenic |
| TGATTTATAGAAACTGCTTC+TGG | 0.321178 | 6_4:+33587212 | Msa0986030:intron |
| ATCTTTATAGATATTGTTGC+TGG | 0.322790 | 6_4:+33585909 | Msa0986030:intron |
| TTCAGTATACTATTATTTGA+TGG | 0.343431 | 6_4:+33587402 | Msa0986030:three_prime_UTR |
| GTCTTTATCGGCGCCTTCAT+CGG | 0.353926 | 6_4:-33585702 | None:intergenic |
| CTTGATTCCATTTCACTAGT+TGG | 0.358444 | 6_4:-33586701 | None:intergenic |
| ATATTCTCTTTATGTATCAT+TGG | 0.365816 | 6_4:-33585491 | None:intergenic |
| ATGTTCTCTTTATGTATCAT+TGG | 0.378307 | 6_4:-33587284 | None:intergenic |
| TGATATATAGAAACTGCTTC+TGG | 0.380757 | 6_4:+33585419 | Msa0986030:intron |
| AACTGATCTGGTTCCTCCTC+CGG | 0.386451 | 6_4:-33586023 | None:intergenic |
| GCTTGTTCCAACTATTGAAA+TGG | 0.388557 | 6_4:+33584899 | Msa0986030:exon |
| GATGTTCAAATGGAAGCTTT+AGG | 0.398765 | 6_4:+33585773 | Msa0986030:CDS |
| ATCATTGGTGTAGCCTTTGA+TGG | 0.420869 | 6_4:-33587269 | None:intergenic |
| GCTTGTTCCAACTAGTGAAA+TGG | 0.435152 | 6_4:+33586694 | Msa0986030:CDS |
| TTGACCTCACTTAACTGATC+TGG | 0.447025 | 6_4:-33586035 | None:intergenic |
| GTTGGGTCAGTGATGTCTAT+AGG | 0.463541 | 6_4:+33585533 | Msa0986030:CDS |
| AATTTGACAAGGAGGAAGTT+GGG | 0.465133 | 6_4:+33585516 | Msa0986030:CDS |
| AAATTTGACAAGGAGGAAGT+TGG | 0.472245 | 6_4:+33585515 | Msa0986030:CDS |
| TTGAATGTAGATACTGTTGC+TGG | 0.476566 | 6_4:+33585957 | Msa0986030:CDS |
| CTTGAGTGATGAACATAAAC+CGG | 0.484380 | 6_4:+33586004 | Msa0986030:CDS |
| CTAGGAATAAATTTGCTAAG+AGG | 0.506638 | 6_4:+33587345 | Msa0986030:CDS |
| CTTAATGTTGAAGCCGATGA+AGG | 0.507652 | 6_4:+33585689 | Msa0986030:CDS |
| GAACATTAGATTTGACAAGA+AGG | 0.508646 | 6_4:+33587301 | Msa0986030:CDS |
| TGGTGTTGATGATGTTCAAA+TGG | 0.513192 | 6_4:+33585763 | Msa0986030:CDS |
| GTAGATACTGTTGCTGGGAG+TGG | 0.522595 | 6_4:+33585963 | Msa0986030:CDS |
| TATAGGTGTTGTTGCTGAGA+AGG | 0.526549 | 6_4:+33585550 | Msa0986030:CDS |
| TTTGACAAGAAGGAGGATGT+TGG | 0.532886 | 6_4:+33587311 | Msa0986030:CDS |
| ATGTTGGATCAGTGATGTCT+AGG | 0.533943 | 6_4:+33587327 | Msa0986030:CDS |
| AGATGCTTATCCTAAGAAGT+TGG | 0.537768 | 6_4:+33587241 | Msa0986030:CDS |
| GAAGTTGGACTCACCATCAA+AGG | 0.538291 | 6_4:+33587256 | Msa0986030:CDS |
| TCTTTATAGATATTGTTGCT+GGG | 0.539783 | 6_4:+33585910 | Msa0986030:intron |
| AACAGTATCTACATTCAAGT+TGG | 0.544362 | 6_4:-33585952 | None:intergenic |
| GAATATTAAATTTGACAAGG+AGG | 0.546543 | 6_4:+33585508 | Msa0986030:CDS |
| AGATGCTTATCATAAGAAGT+TGG | 0.549508 | 6_4:+33585448 | Msa0986030:CDS |
| TTTATGTTCATCACTCAAGT+TGG | 0.550996 | 6_4:-33586000 | None:intergenic |
| GCTTCAACATTAAGATCACT+TGG | 0.579386 | 6_4:-33585680 | None:intergenic |
| TTCTGCTTAAGATCTTGAAG+AGG | 0.580284 | 6_4:-33587371 | None:intergenic |
| AAGTTTAAATCACAACCTGA+AGG | 0.589845 | 6_4:+33586650 | Msa0986030:CDS |
| TCTTTGCAAAAGACGAGTCA+TGG | 0.591635 | 6_4:+33584819 | Msa0986030:five_prime_UTR |
| TCTTTGCGAAAGACGAGTCA+TGG | 0.593931 | 6_4:+33586614 | Msa0986030:intron |
| AAGTTTAAATCACAACCCGA+AGG | 0.623595 | 6_4:+33584855 | Msa0986030:five_prime_UTR |
| TGATGAACATAAACCGGAGG+AGG | 0.624013 | 6_4:+33586010 | Msa0986030:CDS |
| ATCACAACCCGAAGGAGACG+AGG | 0.632609 | 6_4:+33584863 | Msa0986030:five_prime_UTR |
| CATTAGATTTGACAAGAAGG+AGG | 0.633328 | 6_4:+33587304 | Msa0986030:CDS |
| ATCTAGTTCAGCACTCACAC+TGG | 0.641230 | 6_4:-33585588 | None:intergenic |
| AAAGACGAGTCATGGTCAAG+AGG | 0.645697 | 6_4:+33584827 | Msa0986030:five_prime_UTR |
| AAAGACGAGTCATGGTCAAG+AGG | 0.645697 | 6_4:+33586622 | Msa0986030:intron |
| TGAATGTAGATACTGTTGCT+GGG | 0.647487 | 6_4:+33585958 | Msa0986030:CDS |
| ATCACAACCTGAAGGAGACG+AGG | 0.652827 | 6_4:+33586658 | Msa0986030:CDS |
| AGAGAATATTAAATTTGACA+AGG | 0.654937 | 6_4:+33585505 | Msa0986030:CDS |
| GGAACCAGATCAGTTAAGTG+AGG | 0.665857 | 6_4:+33586031 | Msa0986030:CDS |
| AGTGTGAGTGCTGAACTAGA+TGG | 0.666413 | 6_4:+33585590 | Msa0986030:CDS |
| ATAGACTTGAACTCAAACAG+TGG | 0.668405 | 6_4:+33585743 | Msa0986030:CDS |
| GAGTGATGAACATAAACCGG+AGG | 0.720588 | 6_4:+33586007 | Msa0986030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTATTCTTTTATTAT+TGG | - | chr6_4:33586133-33586152 | None:intergenic | 10.0% |
| !!! | TAAAGTTTAAATTTTGAGTA+AGG | + | chr6_4:33584962-33584981 | Msa0986030:intron | 15.0% |
| !!! | AAATATTTTCATAAAGTAAC+CGG | - | chr6_4:33585053-33585072 | None:intergenic | 15.0% |
| !!! | TGCTTATACATTTTATAAAA+AGG | - | chr6_4:33585358-33585377 | None:intergenic | 15.0% |
| !! | TATAACAAGAATAATAATCA+AGG | - | chr6_4:33586341-33586360 | None:intergenic | 15.0% |
| !!! | TGATTATTATTCTTGTTATA+AGG | + | chr6_4:33586341-33586360 | Msa0986030:intron | 15.0% |
| !!! | GATTATTATTCTTGTTATAA+GGG | + | chr6_4:33586342-33586361 | Msa0986030:intron | 15.0% |
| !!! | TAAAGTTTAAATTTTGAGTA+AGG | + | chr6_4:33584962-33584981 | Msa0986030:intron | 15.0% |
| !!! | AAATATTTTCATAAAGTAAC+CGG | - | chr6_4:33585053-33585072 | None:intergenic | 15.0% |
| !!! | AATATTTTCATAAAGTAACC+GGG | - | chr6_4:33585052-33585071 | None:intergenic | 20.0% |
| !! | ATATTCTCTTTATGTATCAT+TGG | - | chr6_4:33585494-33585513 | None:intergenic | 20.0% |
| !! | AGAGAATATTAAATTTGACA+AGG | + | chr6_4:33585505-33585524 | Msa0986030:CDS | 20.0% |
| !! | AACATTCAATTTGTCTTTAT+CGG | - | chr6_4:33585717-33585736 | None:intergenic | 20.0% |
| !! | AGAAATTCATGAAATAGAAA+TGG | - | chr6_4:33585826-33585845 | None:intergenic | 20.0% |
| !! | GGATTGAGATATTATAAATT+AGG | - | chr6_4:33586538-33586557 | None:intergenic | 20.0% |
| !!! | AATATTTTCATAAAGTAACC+GGG | - | chr6_4:33585052-33585071 | None:intergenic | 20.0% |
| !! | TTCAGTATACTATTATTTGA+TGG | + | chr6_4:33587402-33587421 | Msa0986030:three_prime_UTR | 20.0% |
| !!! | AATGTTTTAAATCGAAGTTG+TGG | + | chr6_4:33585011-33585030 | Msa0986030:intron | 25.0% |
| !! | ATATTTTCATAAAGTAACCG+GGG | - | chr6_4:33585051-33585070 | None:intergenic | 25.0% |
| !! | CGTATTTAACAAAAGCATAA+GGG | - | chr6_4:33585306-33585325 | None:intergenic | 25.0% |
| !! | ACGTATTTAACAAAAGCATA+AGG | - | chr6_4:33585307-33585326 | None:intergenic | 25.0% |
| ! | GAATATTAAATTTGACAAGG+AGG | + | chr6_4:33585508-33585527 | Msa0986030:CDS | 25.0% |
| ! | AATCTTGATTGTCTTCAATT+TGG | - | chr6_4:33585646-33585665 | None:intergenic | 25.0% |
| ! | ATCTTTATAGATATTGTTGC+TGG | + | chr6_4:33585909-33585928 | Msa0986030:intron | 25.0% |
| ! | TCTTTATAGATATTGTTGCT+GGG | + | chr6_4:33585910-33585929 | Msa0986030:intron | 25.0% |
| !! | ATTGTAGATTACAGTTGATA+TGG | - | chr6_4:33586274-33586293 | None:intergenic | 25.0% |
| !! | AATGCAAAATTGCTCTTTTT+GGG | - | chr6_4:33586406-33586425 | None:intergenic | 25.0% |
| !! | ATCTCAATCCTTTACATTTT+AGG | + | chr6_4:33586548-33586567 | Msa0986030:intron | 25.0% |
| !! | TCTCAATCCTTTACATTTTA+GGG | + | chr6_4:33586549-33586568 | Msa0986030:intron | 25.0% |
| !! | ATATTTTCATAAAGTAACCG+GGG | - | chr6_4:33585051-33585070 | None:intergenic | 25.0% |
| ! | CGTATTTAACTAAAGCATAA+GGG | - | chr6_4:33587101-33587120 | None:intergenic | 25.0% |
| ! | ACGTATTTAACTAAAGCATA+AGG | - | chr6_4:33587102-33587121 | None:intergenic | 25.0% |
| ! | TGCTTATGCAATGTTTAAAA+AGG | - | chr6_4:33587153-33587172 | None:intergenic | 25.0% |
| ! | ATGTTCTCTTTATGTATCAT+TGG | - | chr6_4:33587287-33587306 | None:intergenic | 25.0% |
| !!! | ATGGTTATGCTTTTTAGTAT+TGG | + | chr6_4:33587421-33587440 | Msa0986030:three_prime_UTR | 25.0% |
| CTTGATTCCATTTCAATAGT+TGG | - | chr6_4:33584909-33584928 | None:intergenic | 30.0% | |
| GAAGCAGTTTCTATATATCA+AGG | - | chr6_4:33585419-33585438 | None:intergenic | 30.0% | |
| TGATATATAGAAACTGCTTC+TGG | + | chr6_4:33585419-33585438 | Msa0986030:intron | 30.0% | |
| AGATGCTTATCATAAGAAGT+TGG | + | chr6_4:33585448-33585467 | Msa0986030:CDS | 30.0% | |
| AACAGTATCTACATTCAAGT+TGG | - | chr6_4:33585955-33585974 | None:intergenic | 30.0% | |
| TTTATGTTCATCACTCAAGT+TGG | - | chr6_4:33586003-33586022 | None:intergenic | 30.0% | |
| ! | CAATGCAAAATTGCTCTTTT+TGG | - | chr6_4:33586407-33586426 | None:intergenic | 30.0% |
| AAGTTTAAATCACAACCTGA+AGG | + | chr6_4:33586650-33586669 | Msa0986030:CDS | 30.0% | |
| !! | CTGAAGAAAAAAGTTGATGA+AGG | - | chr6_4:33586736-33586755 | None:intergenic | 30.0% |
| !!! | CTTCATCAACTTTTTTCTTC+AGG | + | chr6_4:33586734-33586753 | Msa0986030:CDS | 30.0% |
| !! | AATGTTTTAAATCGAAGTCG+TGG | + | chr6_4:33586806-33586825 | Msa0986030:intron | 30.0% |
| ACTTCAACTAATGAACATTG+AGG | - | chr6_4:33587044-33587063 | None:intergenic | 30.0% | |
| GAAGCAGTTTCTATAAATCA+AGG | - | chr6_4:33587212-33587231 | None:intergenic | 30.0% | |
| TGATTTATAGAAACTGCTTC+TGG | + | chr6_4:33587212-33587231 | Msa0986030:intron | 30.0% | |
| GAACATTAGATTTGACAAGA+AGG | + | chr6_4:33587301-33587320 | Msa0986030:CDS | 30.0% | |
| !! | CTAGGAATAAATTTGCTAAG+AGG | + | chr6_4:33587345-33587364 | Msa0986030:CDS | 30.0% |
| AAGTTTAAATCACAACCCGA+AGG | + | chr6_4:33584855-33584874 | Msa0986030:five_prime_UTR | 35.0% | |
| GCTTGTTCCAACTATTGAAA+TGG | + | chr6_4:33584899-33584918 | Msa0986030:exon | 35.0% | |
| !! | CTGAAGCAAAAAGTTGATGA+AGG | - | chr6_4:33584941-33584960 | None:intergenic | 35.0% |
| ! | CTTCATCAACTTTTTGCTTC+AGG | + | chr6_4:33584939-33584958 | Msa0986030:CDS | 35.0% |
| ! | ATAAGCAGCTGTTTCGATAT+AGG | + | chr6_4:33585371-33585390 | Msa0986030:intron | 35.0% |
| ! | ATCATTGGTGTAGCTTTTGA+TGG | - | chr6_4:33585479-33585498 | None:intergenic | 35.0% |
| AAATTTGACAAGGAGGAAGT+TGG | + | chr6_4:33585515-33585534 | Msa0986030:CDS | 35.0% | |
| AATTTGACAAGGAGGAAGTT+GGG | + | chr6_4:33585516-33585535 | Msa0986030:CDS | 35.0% | |
| GCTTCAACATTAAGATCACT+TGG | - | chr6_4:33585683-33585702 | None:intergenic | 35.0% | |
| ATAGACTTGAACTCAAACAG+TGG | + | chr6_4:33585743-33585762 | Msa0986030:CDS | 35.0% | |
| !! | TGGTGTTGATGATGTTCAAA+TGG | + | chr6_4:33585763-33585782 | Msa0986030:CDS | 35.0% |
| GATGTTCAAATGGAAGCTTT+AGG | + | chr6_4:33585773-33585792 | Msa0986030:CDS | 35.0% | |
| TTGAATGTAGATACTGTTGC+TGG | + | chr6_4:33585957-33585976 | Msa0986030:CDS | 35.0% | |
| TGAATGTAGATACTGTTGCT+GGG | + | chr6_4:33585958-33585977 | Msa0986030:CDS | 35.0% | |
| CTTGAGTGATGAACATAAAC+CGG | + | chr6_4:33586004-33586023 | Msa0986030:CDS | 35.0% | |
| CTCAAAGTTTGTGTTAGAAC+AGG | + | chr6_4:33586105-33586124 | Msa0986030:intron | 35.0% | |
| ! | CGATCTTTGTTTACACAGTT+CGG | + | chr6_4:33586178-33586197 | Msa0986030:intron | 35.0% |
| ! | TCATGCTAATTTGTGCCTTA+AGG | + | chr6_4:33586365-33586384 | Msa0986030:intron | 35.0% |
| ! | CATGCTAATTTGTGCCTTAA+GGG | + | chr6_4:33586366-33586385 | Msa0986030:intron | 35.0% |
| TTTCTTAACATGTGCCCTTA+AGG | - | chr6_4:33586383-33586402 | None:intergenic | 35.0% | |
| CTTGATTCCATTTCACTAGT+TGG | - | chr6_4:33586704-33586723 | None:intergenic | 35.0% | |
| CATTGCATAAGCAACTGTTT+CGG | + | chr6_4:33587160-33587179 | Msa0986030:intron | 35.0% | |
| AGATGCTTATCCTAAGAAGT+TGG | + | chr6_4:33587241-33587260 | Msa0986030:CDS | 35.0% | |
| CATTAGATTTGACAAGAAGG+AGG | + | chr6_4:33587304-33587323 | Msa0986030:CDS | 35.0% | |
| TTCTGCTTAAGATCTTGAAG+AGG | - | chr6_4:33587374-33587393 | None:intergenic | 35.0% | |
| TCTTTGCAAAAGACGAGTCA+TGG | + | chr6_4:33584819-33584838 | Msa0986030:five_prime_UTR | 40.0% | |
| GTTTGATGCAGTTCAGATTG+CGG | + | chr6_4:33585325-33585344 | Msa0986030:intron | 40.0% | |
| !! | TATAGGTGTTGTTGCTGAGA+AGG | + | chr6_4:33585550-33585569 | Msa0986030:CDS | 40.0% |
| CTTAATGTTGAAGCCGATGA+AGG | + | chr6_4:33585689-33585708 | Msa0986030:CDS | 40.0% | |
| TTGACCTCACTTAACTGATC+TGG | - | chr6_4:33586038-33586057 | None:intergenic | 40.0% | |
| TCTGATCACAAGGTTGAATC+AGG | + | chr6_4:33586059-33586078 | Msa0986030:intron | 40.0% | |
| TTGTTTACACAGTTCGGCAA+TGG | + | chr6_4:33586184-33586203 | Msa0986030:intron | 40.0% | |
| ! | CAGTTGATATGGCTCAATCA+AGG | - | chr6_4:33586263-33586282 | None:intergenic | 40.0% |
| CAACGGACCCTAAAATGTAA+AGG | - | chr6_4:33586559-33586578 | None:intergenic | 40.0% | |
| !!! | TACATTTTAGGGTCCGTTGT+TGG | + | chr6_4:33586560-33586579 | Msa0986030:intron | 40.0% |
| !!! | ACATTTTAGGGTCCGTTGTT+GGG | + | chr6_4:33586561-33586580 | Msa0986030:intron | 40.0% |
| GCTTGTTCCAACTAGTGAAA+TGG | + | chr6_4:33586694-33586713 | Msa0986030:CDS | 40.0% | |
| GTTTGATGCAGTTCAGATTG+CGG | + | chr6_4:33585325-33585344 | Msa0986030:intron | 40.0% | |
| ATCATTGGTGTAGCCTTTGA+TGG | - | chr6_4:33587272-33587291 | None:intergenic | 40.0% | |
| TTTGACAAGAAGGAGGATGT+TGG | + | chr6_4:33587311-33587330 | Msa0986030:CDS | 40.0% | |
| ATGTTGGATCAGTGATGTCT+AGG | + | chr6_4:33587327-33587346 | Msa0986030:CDS | 40.0% | |
| AAAGACGAGTCATGGTCAAG+AGG | + | chr6_4:33584827-33584846 | Msa0986030:five_prime_UTR | 45.0% | |
| TTTCACTTCCTCGTCTCCTT+CGG | - | chr6_4:33584874-33584893 | None:intergenic | 45.0% | |
| TGGTCACAATTGCATTTCCC+CGG | + | chr6_4:33585031-33585050 | Msa0986030:intron | 45.0% | |
| GTTGGGTCAGTGATGTCTAT+AGG | + | chr6_4:33585533-33585552 | Msa0986030:CDS | 45.0% | |
| ! | ATCTAGTTCAGCACTCACAC+TGG | - | chr6_4:33585591-33585610 | None:intergenic | 45.0% |
| !! | AGTGTGAGTGCTGAACTAGA+TGG | + | chr6_4:33585590-33585609 | Msa0986030:CDS | 45.0% |
| GAGTGATGAACATAAACCGG+AGG | + | chr6_4:33586007-33586026 | Msa0986030:CDS | 45.0% | |
| TGATGAACATAAACCGGAGG+AGG | + | chr6_4:33586010-33586029 | Msa0986030:CDS | 45.0% | |
| GGAACCAGATCAGTTAAGTG+AGG | + | chr6_4:33586031-33586050 | Msa0986030:CDS | 45.0% | |
| TGAGGTCAAGTCTGATCACA+AGG | + | chr6_4:33586049-33586068 | Msa0986030:intron | 45.0% | |
| TCAATCAAGGTACAGCTCAG+GGG | - | chr6_4:33586250-33586269 | None:intergenic | 45.0% | |
| CTCAATCAAGGTACAGCTCA+GGG | - | chr6_4:33586251-33586270 | None:intergenic | 45.0% | |
| TTCCTTAACATGTGCCCTTG+AGG | + | chr6_4:33586495-33586514 | Msa0986030:intron | 45.0% | |
| TCCTTAACATGTGCCCTTGA+GGG | + | chr6_4:33586496-33586515 | Msa0986030:intron | 45.0% | |
| ! | ATGCTAACTTGTGCCCTCAA+GGG | - | chr6_4:33586512-33586531 | None:intergenic | 45.0% |
| ! | AATGCTAACTTGTGCCCTCA+AGG | - | chr6_4:33586513-33586532 | None:intergenic | 45.0% |
| AGCATCTGCATTCCCAACAA+CGG | - | chr6_4:33586576-33586595 | None:intergenic | 45.0% | |
| TCTTTGCGAAAGACGAGTCA+TGG | + | chr6_4:33586614-33586633 | Msa0986030:intron | 45.0% | |
| AAAGACGAGTCATGGTCAAG+AGG | + | chr6_4:33584827-33584846 | Msa0986030:five_prime_UTR | 45.0% | |
| GCATAAGCAACTGTTTCGGT+AGG | + | chr6_4:33587164-33587183 | Msa0986030:intron | 45.0% | |
| GATGGTGAGTCCAACTTCTT+AGG | - | chr6_4:33585461-33585480 | None:intergenic | 45.0% | |
| GAAGTTGGACTCACCATCAA+AGG | + | chr6_4:33585463-33585482 | Msa0986030:CDS | 45.0% | |
| TTCACTTCCTCGTCTCCTTC+GGG | - | chr6_4:33584873-33584892 | None:intergenic | 50.0% | |
| GTCTTTATCGGCGCCTTCAT+CGG | - | chr6_4:33585705-33585724 | None:intergenic | 50.0% | |
| GTAGATACTGTTGCTGGGAG+TGG | + | chr6_4:33585963-33585982 | Msa0986030:CDS | 50.0% | |
| ! | AACTGATCTGGTTCCTCCTC+CGG | - | chr6_4:33586026-33586045 | None:intergenic | 50.0% |
| GCTCAATCAAGGTACAGCTC+AGG | - | chr6_4:33586252-33586271 | None:intergenic | 50.0% | |
| ATCACAACCTGAAGGAGACG+AGG | + | chr6_4:33586658-33586677 | Msa0986030:CDS | 50.0% | |
| TTCACTTCCTCGTCTCCTTC+AGG | - | chr6_4:33584873-33584892 | None:intergenic | 50.0% | |
| TGGTTGCAATTGCATTGCCC+CGG | + | chr6_4:33586826-33586845 | Msa0986030:intron | 50.0% | |
| ATCACAACCCGAAGGAGACG+AGG | + | chr6_4:33584863-33584882 | Msa0986030:five_prime_UTR | 55.0% | |
| GCAGTTCAGATTGCGGCTTC+AGG | + | chr6_4:33585332-33585351 | Msa0986030:intron | 55.0% | |
| ! | GCCCTCAAGGGCACATGTTA+AGG | - | chr6_4:33586500-33586519 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 33584785 | 33587449 | 33584785 | ID=Msa0986030;Name=Msa0986030 |
| chr6_4 | mRNA | 33584785 | 33587449 | 33584785 | ID=Msa0986030-mRNA-1;Parent=Msa0986030;Name=Msa0986030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=133|0.75|0.6|1|1|1|5|52|282 |
| chr6_4 | exon | 33584785 | 33584960 | 33584785 | ID=Msa0986030-mRNA-1:exon:8773;Parent=Msa0986030-mRNA-1 |
| chr6_4 | exon | 33585429 | 33585794 | 33585429 | ID=Msa0986030-mRNA-1:exon:8774;Parent=Msa0986030-mRNA-1 |
| chr6_4 | exon | 33585919 | 33586052 | 33585919 | ID=Msa0986030-mRNA-1:exon:8775;Parent=Msa0986030-mRNA-1 |
| chr6_4 | exon | 33586626 | 33586755 | 33586626 | ID=Msa0986030-mRNA-1:exon:8776;Parent=Msa0986030-mRNA-1 |
| chr6_4 | exon | 33587222 | 33587449 | 33587222 | ID=Msa0986030-mRNA-1:exon:8777;Parent=Msa0986030-mRNA-1 |
| chr6_4 | five_prime_UTR | 33584785 | 33584917 | 33584785 | ID=Msa0986030-mRNA-1:five_prime_utr;Parent=Msa0986030-mRNA-1 |
| chr6_4 | CDS | 33584918 | 33584960 | 33584918 | ID=Msa0986030-mRNA-1:cds;Parent=Msa0986030-mRNA-1 |
| chr6_4 | CDS | 33585429 | 33585794 | 33585429 | ID=Msa0986030-mRNA-1:cds;Parent=Msa0986030-mRNA-1 |
| chr6_4 | CDS | 33585919 | 33586052 | 33585919 | ID=Msa0986030-mRNA-1:cds;Parent=Msa0986030-mRNA-1 |
| chr6_4 | CDS | 33586626 | 33586755 | 33586626 | ID=Msa0986030-mRNA-1:cds;Parent=Msa0986030-mRNA-1 |
| chr6_4 | CDS | 33587222 | 33587397 | 33587222 | ID=Msa0986030-mRNA-1:cds;Parent=Msa0986030-mRNA-1 |
| chr6_4 | three_prime_UTR | 33587398 | 33587449 | 33587398 | ID=Msa0986030-mRNA-1:three_prime_utr;Parent=Msa0986030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
