Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237230 | XP_024631570.1 | 83.688 | 141 | 10 | 3 | 1 | 139 | 68 | 197 | 3.11e-59 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237230 | A0A396J6Z8 | 83.688 | 141 | 10 | 3 | 1 | 139 | 68 | 197 | 1.49e-59 | 192 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0237230 | 0.809012 | 2.335155e-50 | -8.615850e-47 |
| Msa0017510 | Msa0237230 | 0.844249 | 8.499504e-59 | -8.615850e-47 |
| Msa0031340 | Msa0237230 | 0.801138 | 1.037306e-48 | -8.615850e-47 |
| Msa0040450 | Msa0237230 | 0.819681 | 1.022322e-52 | -8.615850e-47 |
| Msa0074240 | Msa0237230 | 0.804585 | 2.012616e-49 | -8.615850e-47 |
| Msa0084380 | Msa0237230 | 0.823789 | 1.146495e-53 | -8.615850e-47 |
| Msa0089630 | Msa0237230 | 0.817242 | 3.649806e-52 | -8.615850e-47 |
| Msa0094850 | Msa0237230 | 0.806925 | 6.492039e-50 | -8.615850e-47 |
| Msa0101810 | Msa0237230 | -0.806059 | 9.885734e-50 | -8.615850e-47 |
| Msa0107280 | Msa0237230 | 0.801745 | 7.787744e-49 | -8.615850e-47 |
| Msa0110970 | Msa0237230 | 0.822176 | 2.725281e-53 | -8.615850e-47 |
| Msa0113970 | Msa0237230 | 0.804311 | 2.295358e-49 | -8.615850e-47 |
| Msa0114060 | Msa0237230 | 0.814948 | 1.187698e-51 | -8.615850e-47 |
| Msa0116770 | Msa0237230 | 0.822266 | 2.596357e-53 | -8.615850e-47 |
| Msa0123100 | Msa0237230 | 0.804399 | 2.201488e-49 | -8.615850e-47 |
| Msa0136070 | Msa0237230 | 0.819008 | 1.455447e-52 | -8.615850e-47 |
| Msa0150800 | Msa0237230 | 0.818666 | 1.740176e-52 | -8.615850e-47 |
| Msa0157290 | Msa0237230 | 0.844573 | 6.954402e-59 | -8.615850e-47 |
| Msa0159930 | Msa0237230 | 0.805931 | 1.051705e-49 | -8.615850e-47 |
| Msa0165210 | Msa0237230 | 0.808766 | 2.635842e-50 | -8.615850e-47 |
| Msa0165220 | Msa0237230 | 0.821467 | 3.976622e-53 | -8.615850e-47 |
| Msa0171290 | Msa0237230 | 0.803289 | 3.743227e-49 | -8.615850e-47 |
| Msa0173990 | Msa0237230 | 0.815735 | 7.938283e-52 | -8.615850e-47 |
| Msa0182680 | Msa0237230 | 0.817999 | 2.464514e-52 | -8.615850e-47 |
| Msa0192510 | Msa0237230 | 0.808492 | 3.016257e-50 | -8.615850e-47 |
| Msa0197660 | Msa0237230 | 0.814298 | 1.654245e-51 | -8.615850e-47 |
| Msa0200260 | Msa0237230 | 0.808560 | 2.916361e-50 | -8.615850e-47 |
| Msa0205850 | Msa0237230 | 0.802368 | 5.798312e-49 | -8.615850e-47 |
| Msa0212990 | Msa0237230 | 0.826843 | 2.171322e-54 | -8.615850e-47 |
| Msa0215320 | Msa0237230 | -0.808245 | 3.405514e-50 | -8.615850e-47 |
| Msa0220580 | Msa0237230 | 0.834182 | 3.474874e-56 | -8.615850e-47 |
| Msa0220740 | Msa0237230 | 0.807691 | 4.467557e-50 | -8.615850e-47 |
| Msa0237230 | Msa0239800 | 0.812087 | 5.057095e-51 | -8.615850e-47 |
| Msa0237230 | Msa0243100 | 0.820773 | 5.746646e-53 | -8.615850e-47 |
| Msa0237230 | Msa0258760 | 0.805340 | 1.399754e-49 | -8.615850e-47 |
| Msa0237230 | Msa0261340 | 0.813785 | 2.147225e-51 | -8.615850e-47 |
| Msa0237230 | Msa0264150 | 0.808219 | 3.447985e-50 | -8.615850e-47 |
| Msa0237230 | Msa0271530 | 0.803785 | 2.953211e-49 | -8.615850e-47 |
| Msa0237230 | Msa0274360 | 0.808067 | 3.716238e-50 | -8.615850e-47 |
| Msa0237230 | Msa0279790 | 0.818499 | 1.898432e-52 | -8.615850e-47 |
| Msa0237230 | Msa0283450 | 0.806076 | 9.803366e-50 | -8.615850e-47 |
| Msa0237230 | Msa0283520 | 0.802230 | 6.192795e-49 | -8.615850e-47 |
| Msa0237230 | Msa0287650 | 0.823954 | 1.048626e-53 | -8.615850e-47 |
| Msa0237230 | Msa0288100 | 0.818083 | 2.358684e-52 | -8.615850e-47 |
| Msa0237230 | Msa0300690 | 0.817887 | 2.611229e-52 | -8.615850e-47 |
| Msa0237230 | Msa0317250 | 0.802321 | 5.929028e-49 | -8.615850e-47 |
| Msa0237230 | Msa0317510 | 0.814221 | 1.720874e-51 | -8.615850e-47 |
| Msa0237230 | Msa0321860 | 0.804267 | 2.344442e-49 | -8.615850e-47 |
| Msa0237230 | Msa0330340 | 0.819476 | 1.138278e-52 | -8.615850e-47 |
| Msa0237230 | Msa0332000 | 0.806604 | 7.589925e-50 | -8.615850e-47 |
| Msa0237230 | Msa0333720 | -0.802700 | 4.954848e-49 | -8.615850e-47 |
| Msa0237230 | Msa0336040 | -0.815836 | 7.536137e-52 | -8.615850e-47 |
| Msa0237230 | Msa0337620 | 0.800157 | 1.643878e-48 | -8.615850e-47 |
| Msa0237230 | Msa0339250 | 0.806846 | 6.745739e-50 | -8.615850e-47 |
| Msa0237230 | Msa0345970 | 0.808286 | 3.337698e-50 | -8.615850e-47 |
| Msa0237230 | Msa0347770 | 0.816542 | 5.240454e-52 | -8.615850e-47 |
| Msa0237230 | Msa0350990 | 0.802301 | 5.987937e-49 | -8.615850e-47 |
| Msa0237230 | Msa0351030 | 0.805747 | 1.150010e-49 | -8.615850e-47 |
| Msa0237230 | Msa0359030 | 0.804931 | 1.704299e-49 | -8.615850e-47 |
| Msa0237230 | Msa0366240 | 0.803756 | 2.994512e-49 | -8.615850e-47 |
| Msa0237230 | Msa0388960 | 0.802589 | 5.222580e-49 | -8.615850e-47 |
| Msa0237230 | Msa0394490 | 0.806678 | 7.319667e-50 | -8.615850e-47 |
| Msa0237230 | Msa0395790 | 0.803294 | 3.734401e-49 | -8.615850e-47 |
| Msa0237230 | Msa0398710 | 0.800043 | 1.734209e-48 | -8.615850e-47 |
| Msa0237230 | Msa0410650 | 0.804547 | 2.049947e-49 | -8.615850e-47 |
| Msa0237230 | Msa0416300 | 0.823311 | 1.483088e-53 | -8.615850e-47 |
| Msa0237230 | Msa0417880 | 0.805174 | 1.516159e-49 | -8.615850e-47 |
| Msa0237230 | Msa0419820 | 0.826631 | 2.439713e-54 | -8.615850e-47 |
| Msa0237230 | Msa0433640 | 0.810838 | 9.443646e-51 | -8.615850e-47 |
| Msa0237230 | Msa0440750 | 0.813711 | 2.229069e-51 | -8.615850e-47 |
| Msa0237230 | Msa0461720 | 0.805032 | 1.623489e-49 | -8.615850e-47 |
| Msa0237230 | Msa0479170 | 0.807633 | 4.594992e-50 | -8.615850e-47 |
| Msa0237230 | Msa0479660 | 0.832493 | 9.161190e-56 | -8.615850e-47 |
| Msa0237230 | Msa0480980 | 0.813753 | 2.181630e-51 | -8.615850e-47 |
| Msa0237230 | Msa0484780 | 0.816858 | 4.451450e-52 | -8.615850e-47 |
| Msa0237230 | Msa0490390 | 0.802205 | 6.265121e-49 | -8.615850e-47 |
| Msa0237230 | Msa0495320 | 0.824960 | 6.079632e-54 | -8.615850e-47 |
| Msa0237230 | Msa0498650 | 0.803734 | 3.026719e-49 | -8.615850e-47 |
| Msa0237230 | Msa0500360 | 0.810166 | 1.319678e-50 | -8.615850e-47 |
| Msa0237230 | Msa0507680 | 0.810002 | 1.431335e-50 | -8.615850e-47 |
| Msa0237230 | Msa0509390 | 0.810087 | 1.372024e-50 | -8.615850e-47 |
| Msa0237230 | Msa0517110 | 0.804744 | 1.864892e-49 | -8.615850e-47 |
| Msa0237230 | Msa0521540 | 0.820157 | 7.954493e-53 | -8.615850e-47 |
| Msa0237230 | Msa0523460 | 0.805214 | 1.486927e-49 | -8.615850e-47 |
| Msa0237230 | Msa0563840 | 0.812568 | 3.970364e-51 | -8.615850e-47 |
| Msa0237230 | Msa0577500 | 0.808165 | 3.540509e-50 | -8.615850e-47 |
| Msa0237230 | Msa0581760 | 0.811265 | 7.633495e-51 | -8.615850e-47 |
| Msa0237230 | Msa0585230 | 0.809243 | 2.083470e-50 | -8.615850e-47 |
| Msa0237230 | Msa0593650 | 0.801016 | 1.098268e-48 | -8.615850e-47 |
| Msa0237230 | Msa0597330 | 0.803399 | 3.551265e-49 | -8.615850e-47 |
| Msa0237230 | Msa0601750 | 0.806355 | 8.562401e-50 | -8.615850e-47 |
| Msa0237230 | Msa0601850 | 0.804550 | 2.047209e-49 | -8.615850e-47 |
| Msa0237230 | Msa0623080 | 0.800696 | 1.276541e-48 | -8.615850e-47 |
| Msa0237230 | Msa0638070 | 0.819864 | 9.284794e-53 | -8.615850e-47 |
| Msa0237230 | Msa0657970 | 0.817908 | 2.582868e-52 | -8.615850e-47 |
| Msa0237230 | Msa0661190 | -0.805415 | 1.349497e-49 | -8.615850e-47 |
| Msa0237230 | Msa0683510 | 0.802583 | 5.237989e-49 | -8.615850e-47 |
| Msa0237230 | Msa0693380 | 0.800351 | 1.500993e-48 | -8.615850e-47 |
| Msa0237230 | Msa0696640 | 0.802025 | 6.824313e-49 | -8.615850e-47 |
| Msa0237230 | Msa0708520 | 0.812233 | 4.698997e-51 | -8.615850e-47 |
| Msa0237230 | Msa0731940 | 0.800861 | 1.181597e-48 | -8.615850e-47 |
| Msa0237230 | Msa0741900 | 0.800617 | 1.325053e-48 | -8.615850e-47 |
| Msa0237230 | Msa0743720 | 0.809417 | 1.911707e-50 | -8.615850e-47 |
| Msa0237230 | Msa0745790 | 0.827617 | 1.416953e-54 | -8.615850e-47 |
| Msa0237230 | Msa0750880 | 0.804996 | 1.651930e-49 | -8.615850e-47 |
| Msa0237230 | Msa0756630 | -0.810600 | 1.063440e-50 | -8.615850e-47 |
| Msa0237230 | Msa0759060 | 0.803201 | 3.902683e-49 | -8.615850e-47 |
| Msa0237230 | Msa0760130 | 0.801316 | 9.538650e-49 | -8.615850e-47 |
| Msa0237230 | Msa0767300 | 0.811511 | 6.749118e-51 | -8.615850e-47 |
| Msa0237230 | Msa0816710 | 0.807350 | 5.277129e-50 | -8.615850e-47 |
| Msa0237230 | Msa0824660 | 0.816404 | 5.626780e-52 | -8.615850e-47 |
| Msa0237230 | Msa0827040 | 0.805724 | 1.162517e-49 | -8.615850e-47 |
| Msa0237230 | Msa0828560 | 0.815616 | 8.437617e-52 | -8.615850e-47 |
| Msa0237230 | Msa0844240 | 0.812297 | 4.551772e-51 | -8.615850e-47 |
| Msa0237230 | Msa0850960 | 0.815287 | 9.986067e-52 | -8.615850e-47 |
| Msa0237230 | Msa0867890 | 0.801985 | 6.954850e-49 | -8.615850e-47 |
| Msa0237230 | Msa0871270 | 0.836286 | 1.022754e-56 | -8.615850e-47 |
| Msa0237230 | Msa0876200 | 0.805472 | 1.313444e-49 | -8.615850e-47 |
| Msa0237230 | Msa0880140 | 0.841082 | 5.894995e-58 | -8.615850e-47 |
| Msa0237230 | Msa0893950 | 0.806234 | 9.079737e-50 | -8.615850e-47 |
| Msa0237230 | Msa0896750 | 0.800665 | 1.295477e-48 | -8.615850e-47 |
| Msa0237230 | Msa0898670 | 0.801318 | 9.529618e-49 | -8.615850e-47 |
| Msa0237230 | Msa0903620 | 0.802161 | 6.396810e-49 | -8.615850e-47 |
| Msa0237230 | Msa0922410 | 0.813700 | 2.241624e-51 | -8.615850e-47 |
| Msa0237230 | Msa0923330 | 0.804440 | 2.158131e-49 | -8.615850e-47 |
| Msa0237230 | Msa0935670 | 0.807925 | 3.982415e-50 | -8.615850e-47 |
| Msa0237230 | Msa0936300 | 0.813587 | 2.373431e-51 | -8.615850e-47 |
| Msa0237230 | Msa0938220 | 0.849364 | 3.389910e-60 | -8.615850e-47 |
| Msa0237230 | Msa0959360 | 0.809365 | 1.961538e-50 | -8.615850e-47 |
| Msa0237230 | Msa0974070 | 0.805641 | 1.210055e-49 | -8.615850e-47 |
| Msa0237230 | Msa0975340 | 0.837939 | 3.865860e-57 | -8.615850e-47 |
| Msa0237230 | Msa0986030 | 0.808217 | 3.452227e-50 | -8.615850e-47 |
| Msa0237230 | Msa1014540 | 0.820880 | 5.429330e-53 | -8.615850e-47 |
| Msa0237230 | Msa1030970 | 0.802132 | 6.485678e-49 | -8.615850e-47 |
| Msa0237230 | Msa1045200 | 0.825249 | 5.195777e-54 | -8.615850e-47 |
| Msa0237230 | Msa1046300 | 0.812696 | 3.722715e-51 | -8.615850e-47 |
| Msa0237230 | Msa1066490 | 0.813468 | 2.521110e-51 | -8.615850e-47 |
| Msa0237230 | Msa1075540 | 0.819509 | 1.118794e-52 | -8.615850e-47 |
| Msa0237230 | Msa1079590 | 0.822264 | 2.599288e-53 | -8.615850e-47 |
| Msa0237230 | Msa1082500 | 0.818760 | 1.656360e-52 | -8.615850e-47 |
| Msa0237230 | Msa1085200 | 0.801049 | 1.081702e-48 | -8.615850e-47 |
| Msa0237230 | Msa1085300 | 0.815346 | 9.689322e-52 | -8.615850e-47 |
| Msa0237230 | Msa1089020 | 0.803401 | 3.548009e-49 | -8.615850e-47 |
| Msa0237230 | Msa1137570 | 0.823573 | 1.288209e-53 | -8.615850e-47 |
| Msa0237230 | Msa1151910 | 0.831799 | 1.359943e-55 | -8.615850e-47 |
| Msa0237230 | Msa1154280 | 0.807931 | 3.971876e-50 | -8.615850e-47 |
| Msa0237230 | Msa1168160 | 0.832759 | 7.869080e-56 | -8.615850e-47 |
| Msa0237230 | Msa1193290 | 0.813863 | 2.063812e-51 | -8.615850e-47 |
| Msa0237230 | Msa1199220 | 0.804828 | 1.791181e-49 | -8.615850e-47 |
| Msa0237230 | Msa1199830 | -0.802753 | 4.829788e-49 | -8.615850e-47 |
| Msa0237230 | Msa1214890 | 0.808217 | 3.451840e-50 | -8.615850e-47 |
| Msa0237230 | Msa1222970 | 0.808610 | 2.846050e-50 | -8.615850e-47 |
| Msa0237230 | Msa1233890 | 0.810887 | 9.218213e-51 | -8.615850e-47 |
| Msa0237230 | Msa1235740 | 0.807348 | 5.281399e-50 | -8.615850e-47 |
| Msa0237230 | Msa1238930 | 0.835802 | 1.357437e-56 | -8.615850e-47 |
| Msa0237230 | Msa1242220 | 0.800908 | 1.155478e-48 | -8.615850e-47 |
| Msa0237230 | Msa1244250 | 0.802933 | 4.433752e-49 | -8.615850e-47 |
| Msa0237230 | Msa1264020 | 0.809350 | 1.976106e-50 | -8.615850e-47 |
| Msa0237230 | Msa1275360 | 0.803883 | 2.817888e-49 | -8.615850e-47 |
| Msa0237230 | Msa1276660 | 0.810870 | 9.298299e-51 | -8.615850e-47 |
| Msa0237230 | Msa1277660 | 0.802853 | 4.606561e-49 | -8.615850e-47 |
| Msa0237230 | Msa1283860 | 0.800040 | 1.737012e-48 | -8.615850e-47 |
| Msa0237230 | Msa1303250 | 0.802333 | 5.896866e-49 | -8.615850e-47 |
| Msa0237230 | Msa1306840 | 0.810022 | 1.417161e-50 | -8.615850e-47 |
| Msa0237230 | Msa1313150 | 0.803216 | 3.875314e-49 | -8.615850e-47 |
| Msa0237230 | Msa1320410 | 0.815050 | 1.127679e-51 | -8.615850e-47 |
| Msa0237230 | Msa1322890 | 0.800891 | 1.165002e-48 | -8.615850e-47 |
| Msa0237230 | Msa1336710 | 0.802400 | 5.712813e-49 | -8.615850e-47 |
| Msa0237230 | Msa1346370 | 0.805932 | 1.051404e-49 | -8.615850e-47 |
| Msa0237230 | Msa1353060 | 0.804356 | 2.246586e-49 | -8.615850e-47 |
| Msa0237230 | Msa1359040 | 0.811565 | 6.569293e-51 | -8.615850e-47 |
| Msa0237230 | Msa1367080 | 0.802227 | 6.199567e-49 | -8.615850e-47 |
| Msa0237230 | Msa1372760 | 0.801766 | 7.712416e-49 | -8.615850e-47 |
| Msa0237230 | Msa1374550 | 0.809015 | 2.331042e-50 | -8.615850e-47 |
| Msa0237230 | Msa1390050 | 0.802950 | 4.399365e-49 | -8.615850e-47 |
| Msa0237230 | Msa1402730 | 0.806238 | 9.065591e-50 | -8.615850e-47 |
| Msa0237230 | Msa1409870 | 0.806592 | 7.631381e-50 | -8.615850e-47 |
| Msa0237230 | Msa1412530 | 0.800918 | 1.150101e-48 | -8.615850e-47 |
| Msa0237230 | Msa1423350 | 0.815192 | 1.048589e-51 | -8.615850e-47 |
| Msa0237230 | Msa1460020 | 0.804074 | 2.571455e-49 | -8.615850e-47 |
| Msa0237230 | Msa1461300 | 0.812606 | 3.896718e-51 | -8.615850e-47 |
| Msa0237230 | Msa1466540 | 0.800726 | 1.258701e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0237230 | MtrunA17_Chr2g0286581 | 83.688 | 141 | 10 | 3 | 1 | 139 | 68 | 197 | 2.86e-63 | 192 |
| Msa0237230 | MtrunA17_Chr2g0287391 | 45.522 | 134 | 58 | 3 | 1 | 132 | 59 | 179 | 5.11e-19 | 78.6 |
| Msa0237230 | MtrunA17_Chr2g0287341 | 52.308 | 65 | 31 | 0 | 75 | 139 | 136 | 200 | 1.74e-15 | 69.7 |
| Msa0237230 | MtrunA17_Chr2g0287401 | 55.357 | 56 | 23 | 1 | 84 | 139 | 113 | 166 | 2.33e-12 | 60.8 |
| Msa0237230 | MtrunA17_Chr2g0287311 | 39.865 | 148 | 75 | 4 | 1 | 135 | 68 | 214 | 1.22e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 22 sgRNAs with CRISPR-Local
Find 23 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAGTTGGATGGTGTTT+TGG | 0.344627 | 2_2:+10313392 | Msa0237230:CDS |
| TCTTGTTCTTGAGGCACGAC+CGG | 0.413059 | 2_2:-10313213 | None:intergenic |
| CAGCTTGTATTTCCGTATCA+AGG | 0.431227 | 2_2:-10313455 | None:intergenic |
| AATGACTGCACTTGCTAAGT+TGG | 0.443221 | 2_2:+10313380 | Msa0237230:CDS |
| GATAAATTCGCATAAAGCTT+CGG | 0.452560 | 2_2:-10313500 | None:intergenic |
| CTTGTTCTTGAGGCACGACC+GGG | 0.453782 | 2_2:-10313212 | None:intergenic |
| CAAATTTATCAACCTTGATA+CGG | 0.464878 | 2_2:+10313443 | Msa0237230:CDS |
| GACAATGCTGCTGGCGAAGA+AGG | 0.488462 | 2_2:+10313282 | Msa0237230:CDS |
| ACCACTTGTTCTTGTTCTTG+AGG | 0.506510 | 2_2:-10313222 | None:intergenic |
| TAAATGTTCAGTCTCTCAAA+GGG | 0.514280 | 2_2:+10313415 | Msa0237230:CDS |
| GTAAATGTTCAGTCTCTCAA+AGG | 0.517114 | 2_2:+10313414 | Msa0237230:CDS |
| CAAGAAGATGACAATGCTGC+TGG | 0.553932 | 2_2:+10313273 | Msa0237230:CDS |
| AAGAAGAAGATGAGAAACAT+TGG | 0.556347 | 2_2:+10313355 | Msa0237230:CDS |
| GAACAAGTGGTTGATGAACA+TGG | 0.574045 | 2_2:+10313234 | Msa0237230:CDS |
| GCCTCAAGAACAAGAACAAG+TGG | 0.580856 | 2_2:+10313221 | Msa0237230:CDS |
| GAATAATCAGAATTAAGATG+AGG | 0.601526 | 2_2:-10313541 | None:intergenic |
| TGATACGGAAATACAAGCTG+TGG | 0.623711 | 2_2:+10313458 | Msa0237230:CDS |
| TACGGAAATACAAGCTGTGG+AGG | 0.638102 | 2_2:+10313461 | Msa0237230:CDS |
| ACTGCACTTGCTAAGTTGGA+TGG | 0.644780 | 2_2:+10313384 | Msa0237230:CDS |
| GAAAGCATTGAACTGTTCCG+CGG | 0.670247 | 2_2:-10313166 | None:intergenic |
| ACAGCATCTTATAACTAACC+CGG | 0.698038 | 2_2:+10313194 | Msa0237230:CDS |
| AAATGTTCAGTCTCTCAAAG+GGG | 0.709545 | 2_2:+10313416 | Msa0237230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CAAATTTATCAACCTTGATA+CGG | + | chr2_2:10313443-10313462 | Msa0237230:CDS | 25.0% |
| AAGAAGAAGATGAGAAACAT+TGG | + | chr2_2:10313355-10313374 | Msa0237230:CDS | 30.0% | |
| TAAATGTTCAGTCTCTCAAA+GGG | + | chr2_2:10313415-10313434 | Msa0237230:CDS | 30.0% | |
| GATAAATTCGCATAAAGCTT+CGG | - | chr2_2:10313503-10313522 | None:intergenic | 30.0% | |
| ACAGCATCTTATAACTAACC+CGG | + | chr2_2:10313194-10313213 | Msa0237230:CDS | 35.0% | |
| GTAAATGTTCAGTCTCTCAA+AGG | + | chr2_2:10313414-10313433 | Msa0237230:CDS | 35.0% | |
| AAATGTTCAGTCTCTCAAAG+GGG | + | chr2_2:10313416-10313435 | Msa0237230:CDS | 35.0% | |
| CGCGGTCTTAGAAAAAAGAA+CGG | - | chr2_2:10313151-10313170 | None:intergenic | 40.0% | |
| !!! | CGTTCTTTTTTCTAAGACCG+CGG | + | chr2_2:10313149-10313168 | Msa0237230:CDS | 40.0% |
| ACCACTTGTTCTTGTTCTTG+AGG | - | chr2_2:10313225-10313244 | None:intergenic | 40.0% | |
| !! | GAACAAGTGGTTGATGAACA+TGG | + | chr2_2:10313234-10313253 | Msa0237230:CDS | 40.0% |
| ! | AATGACTGCACTTGCTAAGT+TGG | + | chr2_2:10313380-10313399 | Msa0237230:CDS | 40.0% |
| !! | TGCTAAGTTGGATGGTGTTT+TGG | + | chr2_2:10313392-10313411 | Msa0237230:CDS | 40.0% |
| CAGCTTGTATTTCCGTATCA+AGG | - | chr2_2:10313458-10313477 | None:intergenic | 40.0% | |
| TGATACGGAAATACAAGCTG+TGG | + | chr2_2:10313458-10313477 | Msa0237230:CDS | 40.0% | |
| !! | GAAAGCATTGAACTGTTCCG+CGG | - | chr2_2:10313169-10313188 | None:intergenic | 45.0% |
| GCCTCAAGAACAAGAACAAG+TGG | + | chr2_2:10313221-10313240 | Msa0237230:CDS | 45.0% | |
| CAAGAAGATGACAATGCTGC+TGG | + | chr2_2:10313273-10313292 | Msa0237230:CDS | 45.0% | |
| ! | ACTGCACTTGCTAAGTTGGA+TGG | + | chr2_2:10313384-10313403 | Msa0237230:CDS | 45.0% |
| TACGGAAATACAAGCTGTGG+AGG | + | chr2_2:10313461-10313480 | Msa0237230:CDS | 45.0% | |
| TCTTGTTCTTGAGGCACGAC+CGG | - | chr2_2:10313216-10313235 | None:intergenic | 50.0% | |
| CTTGTTCTTGAGGCACGACC+GGG | - | chr2_2:10313215-10313234 | None:intergenic | 55.0% | |
| GACAATGCTGCTGGCGAAGA+AGG | + | chr2_2:10313282-10313301 | Msa0237230:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 10313132 | 10313551 | 10313132 | ID=Msa0237230;Name=Msa0237230 |
| chr2_2 | mRNA | 10313132 | 10313551 | 10313132 | ID=Msa0237230-mRNA-1;Parent=Msa0237230;Name=Msa0237230-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|139 |
| chr2_2 | exon | 10313132 | 10313551 | 10313132 | ID=Msa0237230-mRNA-1:exon:4434;Parent=Msa0237230-mRNA-1 |
| chr2_2 | CDS | 10313132 | 10313551 | 10313132 | ID=Msa0237230-mRNA-1:cds;Parent=Msa0237230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
