AlfalfaGEDB | Msa0895790

M. sativa cultivar zhongmu-4 / Msa0895790

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895790	XP_039682782.1	97.452	471	12	0	1	471	1	471	0.0	964

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895790	sp\|Q9C9X7\|IDD14_ARATH	48.458	454	139	10	22	457	34	410	5.42e-127	378

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895790	A0A396HKI0	97.452	471	12	0	1	471	1	471	0.0	964

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0895790	TF	C2H2

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa0895790	-0.804747	1.862350e-49	-8.615850e-47
Msa0002930	Msa0895790	0.802677	5.007890e-49	-8.615850e-47
Msa0004920	Msa0895790	0.803927	2.760076e-49	-8.615850e-47
Msa0012060	Msa0895790	0.819485	1.133109e-52	-8.615850e-47
Msa0014710	Msa0895790	0.811919	5.501434e-51	-8.615850e-47
Msa0017510	Msa0895790	0.843842	1.092368e-58	-8.615850e-47
Msa0029910	Msa0895790	0.802250	6.132732e-49	-8.615850e-47
Msa0040450	Msa0895790	0.817144	3.839243e-52	-8.615850e-47
Msa0046100	Msa0895790	0.833419	5.391522e-56	-8.615850e-47
Msa0048000	Msa0895790	0.827084	1.902136e-54	-8.615850e-47

Showing 1 to 10 of 353 entries

Previous1 2 3 4 5…36Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895790	MtrunA17_Chr6g0479921	97.452	471	12	0	1	471	1	471	0.0	964
Msa0895790	MtrunA17_Chr8g0375521	58.030	467	137	12	1	457	1	418	2.12e-173	493
Msa0895790	MtrunA17_Chr7g0263941	58.730	189	70	3	1	184	3	188	7.06e-75	241
Msa0895790	MtrunA17_Chr8g0373541	63.855	166	59	1	29	194	33	197	1.91e-74	243
Msa0895790	MtrunA17_Chr8g0342421	65.385	156	53	1	29	184	62	216	2.23e-74	243
Msa0895790	MtrunA17_Chr1g0181381	63.750	160	56	2	26	184	35	193	7.18e-74	241
Msa0895790	MtrunA17_Chr1g0151351	61.988	171	58	3	21	185	28	197	3.70e-73	238
Msa0895790	MtrunA17_Chr2g0330171	63.462	156	56	1	29	184	46	200	1.67e-72	236
Msa0895790	MtrunA17_Chr1g0191991	56.757	185	69	2	29	203	63	246	6.59e-72	236
Msa0895790	MtrunA17_Chr4g0040571	64.103	156	55	1	29	184	39	193	9.55e-72	235

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0895790	AT1G68130.1	48.458	454	139	10	22	457	34	410	5.51e-128	378
Msa0895790	AT2G01940.1	82.126	207	28	4	21	218	32	238	6.46e-123	366
Msa0895790	AT2G01940.3	80.383	209	29	6	21	218	32	239	1.53e-117	352
Msa0895790	AT1G25250.3	81.026	195	32	2	22	211	26	220	1.29e-113	340
Msa0895790	AT1G25250.3	43.704	135	69	2	329	457	249	382	1.09e-22	100
Msa0895790	AT1G25250.1	81.461	178	28	2	39	211	20	197	9.65e-103	311
Msa0895790	AT1G25250.1	43.704	135	69	2	329	457	226	359	7.82e-23	100
Msa0895790	AT1G68130.2	42.893	401	134	10	75	457	1	324	2.03e-88	273
Msa0895790	AT2G01940.2	80.667	150	24	3	75	219	1	150	1.14e-83	262
Msa0895790	AT1G25250.2	77.465	142	27	2	75	211	1	142	8.72e-74	235

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

Find 101 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAAAGAAGACCGGC+CGG	0.608705	6_1:+84461820	Msa0895790:CDS
AAACAACATGGCTTTGTTGA+GGG	0.481856	6_1:+84464427	Msa0895790:CDS
AAACTCAAACTCATCACCAA+AGG	0.637316	6_1:+84464364	Msa0895790:CDS
AAAGCTCATCTCAAAACTTG+TGG	0.590538	6_1:+84462528	Msa0895790:CDS
AAAGCTGAGAGGATACCGAA+AGG	0.672530	6_1:+84461519	Msa0895790:five_prime_UTR
AACATAGTAATCATAAACAA+TGG	0.531879	6_1:+84462460	Msa0895790:CDS
AAGAAGCAAGGAAACAAGCA+AGG	0.615543	6_1:+84464507	Msa0895790:CDS
AAGATGCTTGCAACATGGGA+AGG	0.571020	6_1:+84463919	Msa0895790:CDS
AAGCTTATGCTGAAGAAGCA+AGG	0.595645	6_1:+84464495	Msa0895790:CDS
AATAGATCCAGATGCAGAAG+TGG	0.615906	6_1:+84462188	Msa0895790:intron

Showing 1 to 10 of 101 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCTTTCTATGTTCCTTT+CGG	-	chr6_1:84461537-84461556	None:intergenic	30.0%
AGATAAGCTATTAGCTAACA+TGG	-	chr6_1:84461737-84461756	None:intergenic	30.0%
AAAAAGAAAGAGGATTTAGG+AGG	-	chr6_1:84461868-84461887	None:intergenic	30.0%
ATTTACAGATGCATAGAAGA+AGG	+	chr6_1:84462292-84462311	Msa0895790:CDS	30.0%
TGGAAGGGAATATAAAAGTA+AGG	+	chr6_1:84462940-84462959	Msa0895790:intron	30.0%
AAAAGTAAGGAAAATGGGAA+TGG	+	chr6_1:84462953-84462972	Msa0895790:intron	30.0%
AATGGGAATGGAAAAACAAA+AGG	+	chr6_1:84462965-84462984	Msa0895790:intron	30.0%
AAGAGAGACAAATGAAAAAG+TGG	-	chr6_1:84463459-84463478	None:intergenic	30.0%
CAAATTTCAATACATGTCCA+TGG	+	chr6_1:84464027-84464046	Msa0895790:CDS	30.0%
GAGTAGAAGTTTATTGTTCT+TGG	-	chr6_1:84464156-84464175	None:intergenic	30.0%

Showing 1 to 10 of 193 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	84461347	84465051	84461347	ID=Msa0895790;Name=Msa0895790
chr6_1	mRNA	84461347	84465051	84461347	ID=Msa0895790-mRNA-1;Parent=Msa0895790;Name=Msa0895790-mRNA-1;_AED=0.01;_eAED=0.01;_QI=389\|1\|1\|1\|1\|1\|3\|255\|471
chr6_1	exon	84461347	84461850	84461347	ID=Msa0895790-mRNA-1:exon:14248;Parent=Msa0895790-mRNA-1
chr6_1	exon	84462193	84462592	84462193	ID=Msa0895790-mRNA-1:exon:14249;Parent=Msa0895790-mRNA-1
chr6_1	exon	84463896	84465051	84463896	ID=Msa0895790-mRNA-1:exon:14250;Parent=Msa0895790-mRNA-1
chr6_1	five_prime_UTR	84461347	84461735	84461347	ID=Msa0895790-mRNA-1:five_prime_utr;Parent=Msa0895790-mRNA-1
chr6_1	CDS	84461736	84461850	84461736	ID=Msa0895790-mRNA-1:cds;Parent=Msa0895790-mRNA-1
chr6_1	CDS	84462193	84462592	84462193	ID=Msa0895790-mRNA-1:cds;Parent=Msa0895790-mRNA-1
chr6_1	CDS	84463896	84464796	84463896	ID=Msa0895790-mRNA-1:cds;Parent=Msa0895790-mRNA-1
chr6_1	three_prime_UTR	84464797	84465051	84464797	ID=Msa0895790-mRNA-1:three_prime_utr;Parent=Msa0895790-mRNA-1

Gene Sequence

>Msa0895790

ATGTTAGCTAATAGCTTATCTCCATCTTCACTTCCATCTTCTGAGCCTTTTTCTTGCAATGAAAATGGCACTTCTTCCACTAATAAAAGGAAAAGAAGACCGGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTGTTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTACAGATGCATAGAAGAAGGCATAAGGTACCATGGAAGCTATTGAAGAGAGAAACACCAATTGTTAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGTTCCAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCATGTGATTGTGGTCGTGTTTTCTCAAGGGTTGAGAGCTTTATTGAGCATCAAGATGCTTGCAACATGGGAAGGATCCATAATTCAGAATCTCAACCACTTCAAACACCAACTGCATGCTTGTCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAATTTCAATACATGTCCATGGCAAACAAGGCTTCAAGCAATGCCAAAAACAACAAAAGAATCAACAATATTCATGAACCCTATTACTCCTATTACTACTATTACACCTTCTTCTCAAACTTTCTCCAAGAACAATAAACTTCTACTCCATCCAAACTTGGAACTTCAACTCTCCACCACAAACAACACCAACACGACTCTGACAACAGACACGCCTTCAATCAGAAGTGTTGGTACTGTGGAGGCTATTCAGAAGGTTAACCGGTCAACTCAGTTGCATCTCTCAATAGGGTCTTCAGAAATGAGTCATGAGAAAAATGAATCAAACAATATTAGAAACTCAAACTCATCACCAAAGGAGAGTAGCAATAGCAATGAGAAAGTTCAATCAACAACAACAAACAACATGGCTTTGTTGAGGGTTCAAGAACAAGCAACGGAACAATTAAAGGTAGCTATGGCTGAAAAAGCTTATGCTGAAGAAGCAAGGAAACAAGCAAGGAAACAAATTGAAATGGCTGAACAAGAGTTCAACAATGCAAAGAGAATTAGACAACAAGCACAAAGTGAACTTGATAAAGCTTATGGATTGAAACAACATGCAATAAAGCAAATCAATTCAACTATGCTTCAAATCACTTGTCAAGCTTGCAAACAACAATTTCAACATGAAGATAACTCTTTGGTGTTGAGCTATGTTTCTTCTGCCATAACTACTGAAGGTGGTGAAGTAGAAAATGTTGATGGAAAAGGCAAAACAACTAATTAG

Protein sequence

>Msa0895790

MLANSLSPSSLPSSEPFSCNENGTSSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPIVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSESQPLQTPTACLSRTASSPSPSSETNFNTCPWQTRLQAMPKTTKESTIFMNPITPITTITPSSQTFSKNNKLLLHPNLELQLSTTNNTNTTLTTDTPSIRSVGTVEAIQKVNRSTQLHLSIGSSEMSHEKNESNNIRNSNSSPKESSNSNEKVQSTTTNNMALLRVQEQATEQLKVAMAEKAYAEEARKQARKQIEMAEQEFNNAKRIRQQAQSELDKAYGLKQHAIKQINSTMLQITCQACKQQFQHEDNSLVLSYVSSAITTEGGEVENVDGKGKTTN*