Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988600 | XP_013452196.1 | 84.547 | 453 | 23 | 3 | 1 | 407 | 1 | 452 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988600 | sp|O31634|YJCL_BACSU | 27.411 | 394 | 210 | 8 | 77 | 400 | 2 | 389 | 1.54e-36 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988600 | A0A072U8V4 | 84.547 | 453 | 23 | 3 | 1 | 407 | 1 | 452 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075080 | Msa0988600 | 0.800418 | 1.454796e-48 | -8.615850e-47 |
| Msa0648810 | Msa0988600 | 0.805482 | 1.307098e-49 | -8.615850e-47 |
| Msa0739820 | Msa0988600 | 0.821264 | 4.428172e-53 | -8.615850e-47 |
| Msa0828730 | Msa0988600 | 0.816530 | 5.274250e-52 | -8.615850e-47 |
| Msa0127510 | Msa0988600 | 0.819473 | 1.140006e-52 | -8.615850e-47 |
| Msa0182940 | Msa0988600 | 0.811543 | 6.643028e-51 | -8.615850e-47 |
| Msa0211590 | Msa0988600 | 0.828433 | 9.014872e-55 | -8.615850e-47 |
| Msa0368210 | Msa0988600 | 0.834141 | 3.557536e-56 | -8.615850e-47 |
| Msa0428870 | Msa0988600 | 0.805733 | 1.157733e-49 | -8.615850e-47 |
| Msa0446110 | Msa0988600 | 0.801895 | 7.254752e-49 | -8.615850e-47 |
| Msa0480100 | Msa0988600 | 0.813807 | 2.123291e-51 | -8.615850e-47 |
| Msa0988600 | Msa1045750 | 0.805860 | 1.088638e-49 | -8.615850e-47 |
| Msa0988600 | Msa1047390 | 0.801859 | 7.380684e-49 | -8.615850e-47 |
| Msa0988600 | Msa1206500 | 0.814457 | 1.525846e-51 | -8.615850e-47 |
| Msa0988600 | Msa1280520 | 0.831295 | 1.810239e-55 | -8.615850e-47 |
| Msa0988600 | Msa1330080 | 0.821157 | 4.687680e-53 | -8.615850e-47 |
| Msa0988600 | Msa1375570 | 0.802348 | 5.853992e-49 | -8.615850e-47 |
| Msa0988600 | Msa1462700 | 0.800054 | 1.725493e-48 | -8.615850e-47 |
| Msa0552920 | Msa0988600 | 0.807999 | 3.842013e-50 | -8.615850e-47 |
| Msa0887440 | Msa0988600 | 0.885240 | 9.641329e-72 | -8.615850e-47 |
| Msa0958960 | Msa0988600 | 0.820401 | 6.994478e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988600 | MtrunA17_Chr6g0468661 | 84.547 | 453 | 23 | 3 | 1 | 407 | 1 | 452 | 0.0 | 680 |
| Msa0988600 | MtrunA17_Chr1g0202721 | 54.926 | 406 | 132 | 3 | 53 | 407 | 42 | 447 | 8.16e-141 | 409 |
| Msa0988600 | MtrunA17_Chr7g0238521 | 71.242 | 153 | 5 | 2 | 255 | 407 | 1 | 114 | 6.11e-47 | 156 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988600 | AT5G24000.1 | 54.795 | 438 | 139 | 5 | 18 | 407 | 17 | 443 | 1.34e-146 | 424 |
| Msa0988600 | AT5G52540.1 | 54.610 | 423 | 139 | 4 | 34 | 407 | 43 | 461 | 2.99e-134 | 393 |
Find 95 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTCAGCATTGGTGCTTT+TGG | 0.137500 | 6_4:-42880379 | Msa0988600:CDS |
| ATCCATCTTCTTATTGTTCT+TGG | 0.155822 | 6_4:-42876870 | Msa0988600:CDS |
| CTTCTTATTGTTCTTGGATT+AGG | 0.227467 | 6_4:-42876864 | Msa0988600:CDS |
| AGGTCGGAGAAGACTAAAAT+TGG | 0.252433 | 6_4:-42879670 | Msa0988600:CDS |
| TACTCTAGTGGCATTTCTTA+TGG | 0.254011 | 6_4:-42879190 | Msa0988600:CDS |
| ACTATTCCATTGCTATTGTT+TGG | 0.277840 | 6_4:-42879529 | Msa0988600:CDS |
| ATATACACAATACACCTTAT+TGG | 0.282182 | 6_4:-42876614 | Msa0988600:three_prime_UTR |
| TTAGCATCAAACGCGAATAT+TGG | 0.287334 | 6_4:-42876807 | Msa0988600:CDS |
| ATTGCAGTTGCTACTATAAT+TGG | 0.291922 | 6_4:-42879213 | Msa0988600:intron |
| GAAAGTTGCAGCAGCTCTAA+TGG | 0.324983 | 6_4:-42879136 | Msa0988600:CDS |
| GCTGCAACTTTCCAGTTATC+AGG | 0.326869 | 6_4:+42879147 | None:intergenic |
| GCATATGAAGTCTGAAAATC+AGG | 0.327161 | 6_4:-42877606 | Msa0988600:CDS |
| GATCTCTTGGTCCTGATAAC+TGG | 0.334655 | 6_4:-42879158 | Msa0988600:CDS |
| GCTCTAATGGGTAGCTATAT+TGG | 0.344060 | 6_4:-42879123 | Msa0988600:CDS |
| CGAATGATCATTGGGGTGTT+TGG | 0.346995 | 6_4:-42880408 | Msa0988600:CDS |
| ACATACTTCACAAAATTATA+CGG | 0.353945 | 6_4:-42877518 | Msa0988600:CDS |
| TGGGAATCTTTAGTTGTTCC+TGG | 0.360735 | 6_4:-42876744 | Msa0988600:CDS |
| TGAATATACTTGGGGCAGTT+TGG | 0.369634 | 6_4:+42876916 | None:intergenic |
| ATACAAGGAGGAACTCTTCC+AGG | 0.383460 | 6_4:-42877494 | Msa0988600:CDS |
| CATATCTCCGAATGATCATT+GGG | 0.390647 | 6_4:-42880416 | Msa0988600:CDS |
| GGACTTGCGGCAAGTAATCT+TGG | 0.403242 | 6_4:-42879610 | Msa0988600:CDS |
| TGGATATGAATTGAGGATGT+TGG | 0.405304 | 6_4:+42880552 | None:intergenic |
| CAGTGACAGGTGGGTGTTTG+AGG | 0.407502 | 6_4:+42880644 | None:intergenic |
| GCCATTCCACAAGCTGTTGT+AGG | 0.408593 | 6_4:+42876780 | None:intergenic |
| CAAACCAAGCGCCTCTGAAA+TGG | 0.410454 | 6_4:+42878252 | None:intergenic |
| AAAATGCCGGTTAGAATTCC+AGG | 0.410972 | 6_4:+42876726 | None:intergenic |
| TCATATCTCCGAATGATCAT+TGG | 0.415485 | 6_4:-42880417 | Msa0988600:CDS |
| TGAGGTTGTAGTAAGAGGTT+TGG | 0.421108 | 6_4:+42880532 | None:intergenic |
| GACACGTGGCGTGATGGGAT+TGG | 0.436351 | 6_4:+42880604 | None:intergenic |
| GTTGTTCCTGGAATTCTAAC+CGG | 0.448202 | 6_4:-42876732 | Msa0988600:CDS |
| AGATTGTGAGAAATGATGAT+AGG | 0.455659 | 6_4:+42880689 | None:intergenic |
| AAGTATATTCATGTTTGCAC+TGG | 0.466227 | 6_4:-42876904 | Msa0988600:CDS |
| CTGATCATGTATTTATATGA+TGG | 0.467898 | 6_4:+42880725 | None:intergenic |
| ATGGTACCTATGAGATCTCT+TGG | 0.469172 | 6_4:-42879171 | Msa0988600:CDS |
| AAAGTTGCAGCAGCTCTAAT+GGG | 0.474333 | 6_4:-42879135 | Msa0988600:CDS |
| ACACGTGGCGTGATGGGATT+GGG | 0.475756 | 6_4:+42880605 | None:intergenic |
| TGATCATTCGGAGATATGAT+AGG | 0.480338 | 6_4:+42880421 | None:intergenic |
| AATAGCAATGGAATAGTAAG+AGG | 0.484012 | 6_4:+42879535 | None:intergenic |
| GCAGTAGCTGTCTGTAACAC+AGG | 0.490849 | 6_4:+42877575 | None:intergenic |
| CCATTCCACAAGCTGTTGTA+GGG | 0.491347 | 6_4:+42876781 | None:intergenic |
| ACCTGCATATTCAATTGTCT+TGG | 0.491981 | 6_4:-42879569 | Msa0988600:CDS |
| GCATCAAACGCGAATATTGG+CGG | 0.493349 | 6_4:-42876804 | Msa0988600:CDS |
| TGTGGAATGGCCAAGGCTAA+AGG | 0.497128 | 6_4:-42876768 | Msa0988600:CDS |
| AGATTCCCAGCCTTTAGCCT+TGG | 0.499655 | 6_4:+42876758 | None:intergenic |
| AGTGCAAACATGAATATACT+TGG | 0.504219 | 6_4:+42876906 | None:intergenic |
| ATCCAAGAACAATAAGAAGA+TGG | 0.504284 | 6_4:+42876868 | None:intergenic |
| TGGTCTGCTATCTTCAGCAT+TGG | 0.510382 | 6_4:-42880388 | Msa0988600:CDS |
| AGAGGTTTGGATATGAATTG+AGG | 0.514825 | 6_4:+42880545 | None:intergenic |
| CAAACACCCCAATGATCATT+CGG | 0.518394 | 6_4:+42880409 | None:intergenic |
| GTGCAAACATGAATATACTT+GGG | 0.524524 | 6_4:+42876907 | None:intergenic |
| GGTCGGAGAAGACTAAAATT+GGG | 0.531713 | 6_4:-42879669 | Msa0988600:CDS |
| GTTGGTGGTGCAGTCTCTGC+GGG | 0.532669 | 6_4:+42878139 | None:intergenic |
| TCCAAGACAATTGAATATGC+AGG | 0.534421 | 6_4:+42879568 | None:intergenic |
| CCCTACAACAGCTTGTGGAA+TGG | 0.538883 | 6_4:-42876781 | Msa0988600:CDS |
| GAATGGCCAAGGCTAAAGGC+TGG | 0.543700 | 6_4:-42876764 | Msa0988600:CDS |
| GGAGTGACACGTGGCGTGAT+GGG | 0.545646 | 6_4:+42880599 | None:intergenic |
| GTTGCCATTTCAGAGGCGCT+TGG | 0.549654 | 6_4:-42878256 | Msa0988600:CDS |
| GCTTTAGTGAGCACATTAGT+CGG | 0.551269 | 6_4:-42879631 | Msa0988600:CDS |
| GATTGTGAGAAATGATGATA+GGG | 0.559207 | 6_4:+42880690 | None:intergenic |
| TTTGTGGTGGTTGGAGCTAG+TGG | 0.561107 | 6_4:-42876957 | Msa0988600:CDS |
| TCAGGACCAAGAGATCTCAT+AGG | 0.565976 | 6_4:+42879165 | None:intergenic |
| GCAATTGATGAGGTAGGAGA+TGG | 0.568992 | 6_4:+42876514 | None:intergenic |
| TTTGCTCCAAACAATAGCAA+TGG | 0.576769 | 6_4:+42879523 | None:intergenic |
| AACAGCTTGTGGAATGGCCA+AGG | 0.578217 | 6_4:-42876775 | Msa0988600:CDS |
| GGCGGCCCTACAACAGCTTG+TGG | 0.579346 | 6_4:-42876786 | Msa0988600:CDS |
| GGGTGTTTGAGGAGAGACAT+TGG | 0.585033 | 6_4:+42880655 | None:intergenic |
| GAAGACTAAAATTGGGAGCA+TGG | 0.585584 | 6_4:-42879662 | Msa0988600:CDS |
| CGGAGTGACACGTGGCGTGA+TGG | 0.588137 | 6_4:+42880598 | None:intergenic |
| GGATGTTGGAGAATCTAGTA+CGG | 0.588596 | 6_4:+42880566 | None:intergenic |
| AATCATGCAATTGATGAGGT+AGG | 0.598765 | 6_4:+42876508 | None:intergenic |
| GAGACTGCACCACCAACCAC+TGG | 0.599800 | 6_4:-42878133 | Msa0988600:intron |
| TACTATAATTGGTACTCTAG+TGG | 0.601056 | 6_4:-42879202 | Msa0988600:CDS |
| TAATTATGTTGCCATTTCAG+AGG | 0.603851 | 6_4:-42878263 | Msa0988600:CDS |
| ATCTAGTACGGAGAGAATGT+CGG | 0.609574 | 6_4:+42880578 | None:intergenic |
| CTAATGGGTAGCTATATTGG+TGG | 0.610720 | 6_4:-42879120 | Msa0988600:CDS |
| ACAAAATTATACGGTATACA+AGG | 0.612153 | 6_4:-42877509 | Msa0988600:CDS |
| AATGGCCAAGGCTAAAGGCT+GGG | 0.617073 | 6_4:-42876763 | Msa0988600:CDS |
| AAAATAGTACCAGTGGTTGG+TGG | 0.618699 | 6_4:+42878124 | None:intergenic |
| CATATGAAGTCTGAAAATCA+GGG | 0.621061 | 6_4:-42877605 | Msa0988600:CDS |
| GAGCACATTAGTCGGACTTG+CGG | 0.623258 | 6_4:-42879623 | Msa0988600:CDS |
| TCGTAATCATGCAATTGATG+AGG | 0.646397 | 6_4:+42876504 | None:intergenic |
| TGTTGAGAGAGAACAGTGAC+AGG | 0.651533 | 6_4:+42880631 | None:intergenic |
| CAGATACGAGGTAATTGTCG+TGG | 0.653364 | 6_4:+42880501 | None:intergenic |
| TGCAAACATGAATATACTTG+GGG | 0.655619 | 6_4:+42876908 | None:intergenic |
| AATTACCTCGTATCTGACAA+AGG | 0.656331 | 6_4:-42880494 | Msa0988600:CDS |
| GGTTGGTGGTGCAGTCTCTG+CGG | 0.668361 | 6_4:+42878138 | None:intergenic |
| GAGAATGTCGGAGTGACACG+TGG | 0.675274 | 6_4:+42880590 | None:intergenic |
| GAATATGCAGGTGCATCATG+TGG | 0.682049 | 6_4:+42879580 | None:intergenic |
| GAGAGACATTGGTGTCTGTG+TGG | 0.691311 | 6_4:+42880666 | None:intergenic |
| GAGAGAGAACAGTGACAGGT+GGG | 0.691404 | 6_4:+42880635 | None:intergenic |
| TGAGAGAGAACAGTGACAGG+TGG | 0.699668 | 6_4:+42880634 | None:intergenic |
| AGGTTCCTTTGTCAGATACG+AGG | 0.716741 | 6_4:+42880489 | None:intergenic |
| AAATTATACGGTATACAAGG+AGG | 0.729505 | 6_4:-42877506 | Msa0988600:CDS |
| ACAACACTTCGACTTATACG+AGG | 0.733698 | 6_4:+42880469 | None:intergenic |
| ATATCTCCGAATGATCATTG+GGG | 0.737045 | 6_4:-42880415 | Msa0988600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAGATTGAATAATTTAA+TGG | - | chr6_4:42879276-42879295 | Msa0988600:intron | 10.0% |
| !! | ATAAGATTGAATAATTTAAT+GGG | - | chr6_4:42879277-42879296 | Msa0988600:intron | 10.0% |
| !! | TTCTATTTATCTATACAAAA+TGG | - | chr6_4:42877762-42877781 | Msa0988600:intron | 15.0% |
| !!! | ATGAATAGTTTTTTTATTAC+CGG | - | chr6_4:42879169-42879188 | Msa0988600:CDS | 15.0% |
| !! | ATTACTTTCATTATTTAGTT+TGG | + | chr6_4:42879973-42879992 | None:intergenic | 15.0% |
| !! | AATAATGAAAGTAATATTTG+AGG | - | chr6_4:42879978-42879997 | Msa0988600:intron | 15.0% |
| !! | GTAAAATATGTAAATTCTTT+AGG | - | chr6_4:42880106-42880125 | Msa0988600:intron | 15.0% |
| !! | TTACTTCTTGTAAAAATTTA+AGG | - | chr6_4:42880167-42880186 | Msa0988600:intron | 15.0% |
| !!! | TCTTTTCATTTTGTGTAATT+TGG | - | chr6_4:42876885-42876904 | Msa0988600:CDS | 20.0% |
| !! | TTGACTAAAAAATATCAGTT+TGG | - | chr6_4:42877028-42877047 | Msa0988600:intron | 20.0% |
| !!! | ATTCAATTAGTTTTAAACTG+CGG | - | chr6_4:42877294-42877313 | Msa0988600:intron | 20.0% |
| !! | ATTTGTACAACTATATAAAG+TGG | - | chr6_4:42877397-42877416 | Msa0988600:intron | 20.0% |
| !! | ATTCCATTAAAAATTGCATA+GGG | - | chr6_4:42878714-42878733 | Msa0988600:intron | 20.0% |
| !! | TACTTGATGCAATTAAAAAT+TGG | - | chr6_4:42878765-42878784 | Msa0988600:intron | 20.0% |
| !! | ACTTGATGCAATTAAAAATT+GGG | - | chr6_4:42878766-42878785 | Msa0988600:intron | 20.0% |
| !!! | TATTATTTGAAACATGTTGA+TGG | - | chr6_4:42878847-42878866 | Msa0988600:intron | 20.0% |
| !!! | TATTTGTGCTGTTTATTTTA+TGG | - | chr6_4:42879011-42879030 | Msa0988600:intron | 20.0% |
| !! | TTGTATTCATTATATCAATC+CGG | + | chr6_4:42879191-42879210 | None:intergenic | 20.0% |
| !!! | ATCATTATAGTTCTAAATTG+AGG | - | chr6_4:42879314-42879333 | Msa0988600:intron | 20.0% |
| !!! | TCATTATAGTTCTAAATTGA+GGG | - | chr6_4:42879315-42879334 | Msa0988600:intron | 20.0% |
| !! | ACATACTTCACAAAATTATA+CGG | - | chr6_4:42879681-42879700 | Msa0988600:intron | 20.0% |
| !! | ACTAACAAAAGACATATTAA+AGG | - | chr6_4:42880010-42880029 | Msa0988600:intron | 20.0% |
| !!! | AGAAGAGTAAACATTAATTT+TGG | + | chr6_4:42880037-42880056 | None:intergenic | 20.0% |
| !! | TTGTAAAAATTTAAGGATCA+TGG | - | chr6_4:42880174-42880193 | Msa0988600:intron | 20.0% |
| !! | TGTAAAAATTTAAGGATCAT+GGG | - | chr6_4:42880175-42880194 | Msa0988600:intron | 20.0% |
| !!! | GTTCATATTTTAAACATCTT+AGG | + | chr6_4:42880202-42880221 | None:intergenic | 20.0% |
| !! | TAAAAACATAACTTCCAATA+AGG | + | chr6_4:42880602-42880621 | None:intergenic | 20.0% |
| !!! | ATGTTTTTAACACAGTTTTA+AGG | - | chr6_4:42880613-42880632 | Msa0988600:CDS | 20.0% |
| ! | CTGATCATGTATTTATATGA+TGG | + | chr6_4:42876477-42876496 | None:intergenic | 25.0% |
| ! | TTCCTAATTCCATTTCTTTA+TGG | - | chr6_4:42876919-42876938 | Msa0988600:CDS | 25.0% |
| ! | AACCATAAAGAAATGGAATT+AGG | + | chr6_4:42876924-42876943 | None:intergenic | 25.0% |
| !!! | TTTATGGTTTGTTGAGAAAT+AGG | - | chr6_4:42876935-42876954 | Msa0988600:CDS | 25.0% |
| ! | GCAGTGTTTGATAAAATTAA+CGG | + | chr6_4:42877159-42877178 | None:intergenic | 25.0% |
| ! | AACTAACACTCTATTATAGT+GGG | + | chr6_4:42877448-42877467 | None:intergenic | 25.0% |
| ! | AAACTAACACTCTATTATAG+TGG | + | chr6_4:42877449-42877468 | None:intergenic | 25.0% |
| !!! | ATTTGTTGTTGTGAAATACA+AGG | - | chr6_4:42877509-42877528 | Msa0988600:CDS | 25.0% |
| !! | ACAACTGTAATTTAGAACTA+CGG | + | chr6_4:42878295-42878314 | None:intergenic | 25.0% |
| ! | AAACTCTTTGCTTCAAAATT+AGG | - | chr6_4:42878600-42878619 | Msa0988600:intron | 25.0% |
| ! | AACTCTTTGCTTCAAAATTA+GGG | - | chr6_4:42878601-42878620 | Msa0988600:intron | 25.0% |
| ! | GATTCCATTAAAAATTGCAT+AGG | - | chr6_4:42878713-42878732 | Msa0988600:intron | 25.0% |
| ! | TATAGTAAAAATAGTACCAG+TGG | + | chr6_4:42879085-42879104 | None:intergenic | 25.0% |
| ! | ACTATTCATTCCAAAAATTC+TGG | + | chr6_4:42879158-42879177 | None:intergenic | 25.0% |
| ! | TCACATTTCATAACTAATAC+TGG | + | chr6_4:42879239-42879258 | None:intergenic | 25.0% |
| ! | AACTATAATGATGATTCCAT+CGG | + | chr6_4:42879306-42879325 | None:intergenic | 25.0% |
| ! | ACAAAATTATACGGTATACA+AGG | - | chr6_4:42879690-42879709 | Msa0988600:intron | 25.0% |
| !! | AATTTGGTTCATAAAACACA+CGG | + | chr6_4:42879925-42879944 | None:intergenic | 25.0% |
| !! | TGCTCTTTGATTAGTTAATT+TGG | + | chr6_4:42879941-42879960 | None:intergenic | 25.0% |
| !! | ATGTCTTTTGTTAGTCAATT+TGG | + | chr6_4:42880005-42880024 | None:intergenic | 25.0% |
| ! | GTTGACAATTATAACTGTTA+AGG | - | chr6_4:42880128-42880147 | Msa0988600:intron | 25.0% |
| ! | AATTATAACTGTTAAGGCTT+TGG | - | chr6_4:42880134-42880153 | Msa0988600:intron | 25.0% |
| !!! | GTTTCAATTGCAACTTTTTT+AGG | - | chr6_4:42880500-42880519 | Msa0988600:CDS | 25.0% |
| !!! | ATTGCAACTTTTTTAGGTAT+TGG | - | chr6_4:42880506-42880525 | Msa0988600:CDS | 25.0% |
| !!! | ACTTTTTTAGGTATTGGTTT+TGG | - | chr6_4:42880512-42880531 | Msa0988600:CDS | 25.0% |
| ! | ATATACACAATACACCTTAT+TGG | - | chr6_4:42880585-42880604 | Msa0988600:CDS | 25.0% |
| GATTGTGAGAAATGATGATA+GGG | + | chr6_4:42876512-42876531 | None:intergenic | 30.0% | |
| AGATTGTGAGAAATGATGAT+AGG | + | chr6_4:42876513-42876532 | None:intergenic | 30.0% | |
| CTCAACAAACCATAAAGAAA+TGG | + | chr6_4:42876931-42876950 | None:intergenic | 30.0% | |
| !!! | AAGTAGCTTTTTTTCTACAG+AGG | + | chr6_4:42877133-42877152 | None:intergenic | 30.0% |
| ! | CTTTGTTTGGGAAAAAATAG+TGG | + | chr6_4:42877262-42877281 | None:intergenic | 30.0% |
| ! | TTTTTCCCAAACAAAGCATA+AGG | - | chr6_4:42877266-42877285 | Msa0988600:intron | 30.0% |
| ! | TTTTCCCAAACAAAGCATAA+GGG | - | chr6_4:42877267-42877286 | Msa0988600:intron | 30.0% |
| TAAATACTATAGTGGCATAG+TGG | + | chr6_4:42877425-42877444 | None:intergenic | 30.0% | |
| !! | ATAGTGGGTAAATACTATAG+TGG | + | chr6_4:42877433-42877452 | None:intergenic | 30.0% |
| AATAGCAATGGAATAGTAAG+AGG | + | chr6_4:42877667-42877686 | None:intergenic | 30.0% | |
| ! | ACTATTCCATTGCTATTGTT+TGG | - | chr6_4:42877670-42877689 | Msa0988600:intron | 30.0% |
| TTAAATGTAATTGCACGTGT+CGG | + | chr6_4:42877841-42877860 | None:intergenic | 30.0% | |
| CAGTGTTTCATAGTTTATGA+AGG | - | chr6_4:42877912-42877931 | Msa0988600:intron | 30.0% | |
| !! | TGAAACTGATTTTGATGTTG+TGG | - | chr6_4:42877963-42877982 | Msa0988600:intron | 30.0% |
| ATTGCAGTTGCTACTATAAT+TGG | - | chr6_4:42877986-42878005 | Msa0988600:intron | 30.0% | |
| TACTATAATTGGTACTCTAG+TGG | - | chr6_4:42877997-42878016 | Msa0988600:intron | 30.0% | |
| AAGTTCACCATAATTAAGCA+TGG | + | chr6_4:42878129-42878148 | None:intergenic | 30.0% | |
| !! | GTAGTTCTAAATTACAGTTG+TGG | - | chr6_4:42878294-42878313 | Msa0988600:intron | 30.0% |
| ATAATTTAGCCAGAATGTCA+AGG | + | chr6_4:42878344-42878363 | None:intergenic | 30.0% | |
| GCAGATATAGTTCAAAATTG+CGG | + | chr6_4:42878440-42878459 | None:intergenic | 30.0% | |
| TAAATGCTAGATACATCTAG+AGG | - | chr6_4:42878476-42878495 | Msa0988600:intron | 30.0% | |
| ! | GTGTTTTGTCACAAACATAT+TGG | + | chr6_4:42878531-42878550 | None:intergenic | 30.0% |
| ACTCTTTGCTTCAAAATTAG+GGG | - | chr6_4:42878602-42878621 | Msa0988600:intron | 30.0% | |
| ! | CATCCCTATGCAATTTTTAA+TGG | + | chr6_4:42878720-42878739 | None:intergenic | 30.0% |
| TGCATCAAGTATTCATTCAA+TGG | + | chr6_4:42878756-42878775 | None:intergenic | 30.0% | |
| !!! | CATGTTGATGGATTTTACAA+CGG | - | chr6_4:42878859-42878878 | Msa0988600:intron | 30.0% |
| ! | TAATTATGTTGCCATTTCAG+AGG | - | chr6_4:42878936-42878955 | Msa0988600:intron | 30.0% |
| !!! | TTTTATGGTGTTGTTTGCAT+TGG | - | chr6_4:42879026-42879045 | Msa0988600:intron | 30.0% |
| ACAAGAAACAGCTTAAAAAC+TGG | + | chr6_4:42879116-42879135 | None:intergenic | 30.0% | |
| ! | TTGTTGCATTTTCTGTGTTT+GGG | - | chr6_4:42879132-42879151 | Msa0988600:CDS | 30.0% |
| ATAATTTAATGGGAAACCGA+TGG | - | chr6_4:42879287-42879306 | Msa0988600:intron | 30.0% | |
| ! | TAGACTGCAATTTAGAACTA+TGG | - | chr6_4:42879452-42879471 | Msa0988600:intron | 30.0% |
| !! | GTGTTTTTGTTCATCTTGAA+TGG | - | chr6_4:42879525-42879544 | Msa0988600:CDS | 30.0% |
| CTTGATTTAACGAGTAATGT+TGG | - | chr6_4:42879557-42879576 | Msa0988600:CDS | 30.0% | |
| CATATGAAGTCTGAAAATCA+GGG | - | chr6_4:42879594-42879613 | Msa0988600:CDS | 30.0% | |
| AAATTATACGGTATACAAGG+AGG | - | chr6_4:42879693-42879712 | Msa0988600:intron | 30.0% | |
| !!! | TTTGTTGACTCTATTTTGAG+TGG | - | chr6_4:42879837-42879856 | Msa0988600:intron | 30.0% |
| CAAAGATTATAGTGACAGTT+CGG | + | chr6_4:42879877-42879896 | None:intergenic | 30.0% | |
| ! | ATTTGGTTCATAAAACACAC+GGG | + | chr6_4:42879924-42879943 | None:intergenic | 30.0% |
| ! | ACTAATCAAAGAGCATAATC+AGG | - | chr6_4:42879946-42879965 | Msa0988600:intron | 30.0% |
| ATATCTACAGAAACAACATG+AGG | + | chr6_4:42880066-42880085 | None:intergenic | 30.0% | |
| ATATGAACTATTTCGTTCAC+AGG | - | chr6_4:42880214-42880233 | Msa0988600:intron | 30.0% | |
| TGCAAACATGAATATACTTG+GGG | + | chr6_4:42880294-42880313 | None:intergenic | 30.0% | |
| GTGCAAACATGAATATACTT+GGG | + | chr6_4:42880295-42880314 | None:intergenic | 30.0% | |
| AGTGCAAACATGAATATACT+TGG | + | chr6_4:42880296-42880315 | None:intergenic | 30.0% | |
| AAGTATATTCATGTTTGCAC+TGG | - | chr6_4:42880295-42880314 | Msa0988600:intron | 30.0% | |
| ATCCATCTTCTTATTGTTCT+TGG | - | chr6_4:42880329-42880348 | Msa0988600:intron | 30.0% | |
| ATCCAAGAACAATAAGAAGA+TGG | + | chr6_4:42880334-42880353 | None:intergenic | 30.0% | |
| CTTCTTATTGTTCTTGGATT+AGG | - | chr6_4:42880335-42880354 | Msa0988600:intron | 30.0% | |
| AATTGAAACACCAAAAATGC+CGG | + | chr6_4:42880489-42880508 | None:intergenic | 30.0% | |
| !!! | AGGTATTGGTTTTGGATTAA+TGG | - | chr6_4:42880520-42880539 | Msa0988600:CDS | 30.0% |
| ! | TCATGAGAAATTTTGTCGAA+AGG | + | chr6_4:42880641-42880660 | None:intergenic | 30.0% |
| TGGATATGAATTGAGGATGT+TGG | + | chr6_4:42876650-42876669 | None:intergenic | 35.0% | |
| AGAGGTTTGGATATGAATTG+AGG | + | chr6_4:42876657-42876676 | None:intergenic | 35.0% | |
| !!! | TGTTTTGAGGTTGTAGTAAG+AGG | + | chr6_4:42876675-42876694 | None:intergenic | 35.0% |
| AATTACCTCGTATCTGACAA+AGG | - | chr6_4:42876705-42876724 | Msa0988600:CDS | 35.0% | |
| TGATCATTCGGAGATATGAT+AGG | + | chr6_4:42876781-42876800 | None:intergenic | 35.0% | |
| TCATATCTCCGAATGATCAT+TGG | - | chr6_4:42876782-42876801 | Msa0988600:CDS | 35.0% | |
| CATATCTCCGAATGATCATT+GGG | - | chr6_4:42876783-42876802 | Msa0988600:CDS | 35.0% | |
| ATATCTCCGAATGATCATTG+GGG | - | chr6_4:42876784-42876803 | Msa0988600:CDS | 35.0% | |
| !! | CATACCCTTATGCTTTGTTT+GGG | + | chr6_4:42877274-42877293 | None:intergenic | 35.0% |
| ! | TCATACCCTTATGCTTTGTT+TGG | + | chr6_4:42877275-42877294 | None:intergenic | 35.0% |
| GTTGTTGTGAAATACAAGGT+CGG | - | chr6_4:42877513-42877532 | Msa0988600:CDS | 35.0% | |
| ACCTGCATATTCAATTGTCT+TGG | - | chr6_4:42877630-42877649 | Msa0988600:intron | 35.0% | |
| TCCAAGACAATTGAATATGC+AGG | + | chr6_4:42877634-42877653 | None:intergenic | 35.0% | |
| TTTGCTCCAAACAATAGCAA+TGG | + | chr6_4:42877679-42877698 | None:intergenic | 35.0% | |
| TTCTAGTGGCTTTCTTACTT+GGG | - | chr6_4:42877731-42877750 | Msa0988600:intron | 35.0% | |
| ! | ATTACGATTGAAAGCGTGTT+TGG | - | chr6_4:42877789-42877808 | Msa0988600:intron | 35.0% |
| TACTCTAGTGGCATTTCTTA+TGG | - | chr6_4:42878009-42878028 | Msa0988600:intron | 35.0% | |
| AGTTGCTCCATGCTTAATTA+TGG | - | chr6_4:42878119-42878138 | Msa0988600:intron | 35.0% | |
| CTAAATTACAGTTGTGGTCT+CGG | - | chr6_4:42878300-42878319 | Msa0988600:intron | 35.0% | |
| GCTAAATTATGCAGCAAATG+AGG | - | chr6_4:42878354-42878373 | Msa0988600:intron | 35.0% | |
| AATTATGCAGCAAATGAGGT+CGG | - | chr6_4:42878358-42878377 | Msa0988600:intron | 35.0% | |
| TTTGTGACAAAACACTAGCT+TGG | - | chr6_4:42878536-42878555 | Msa0988600:intron | 35.0% | |
| AATCAACAAGGAAGAGTCAA+AGG | + | chr6_4:42878903-42878922 | None:intergenic | 35.0% | |
| CAGCTACACAAAAATCAACA+AGG | + | chr6_4:42878915-42878934 | None:intergenic | 35.0% | |
| GTAAAAATAGTACCAGTGGT+TGG | + | chr6_4:42879081-42879100 | None:intergenic | 35.0% | |
| ! | CTTGTTGCATTTTCTGTGTT+TGG | - | chr6_4:42879131-42879150 | Msa0988600:CDS | 35.0% |
| ! | GCTGCAAACTTTGTTATCAA+GGG | - | chr6_4:42879353-42879372 | Msa0988600:intron | 35.0% |
| TTGTTATCAAGGGAAGATGT+AGG | - | chr6_4:42879363-42879382 | Msa0988600:intron | 35.0% | |
| GCATATGAAGTCTGAAAATC+AGG | - | chr6_4:42879593-42879612 | Msa0988600:CDS | 35.0% | |
| !!! | TCGTTCACAGGTATTTTTTG+TGG | - | chr6_4:42880226-42880245 | Msa0988600:intron | 35.0% |
| !!! | TTCACAGGTATTTTTTGTGG+TGG | - | chr6_4:42880229-42880248 | Msa0988600:intron | 35.0% |
| TTAGCATCAAACGCGAATAT+TGG | - | chr6_4:42880392-42880411 | Msa0988600:CDS | 35.0% | |
| AATCATGCAATTGATGAGGT+AGG | + | chr6_4:42880694-42880713 | None:intergenic | 35.0% | |
| TCGTAATCATGCAATTGATG+AGG | + | chr6_4:42880698-42880717 | None:intergenic | 35.0% | |
| ATCTAGTACGGAGAGAATGT+CGG | + | chr6_4:42876624-42876643 | None:intergenic | 40.0% | |
| GGATGTTGGAGAATCTAGTA+CGG | + | chr6_4:42876636-42876655 | None:intergenic | 40.0% | |
| TGAGGTTGTAGTAAGAGGTT+TGG | + | chr6_4:42876670-42876689 | None:intergenic | 40.0% | |
| ACAACACTTCGACTTATACG+AGG | + | chr6_4:42876733-42876752 | None:intergenic | 40.0% | |
| CAAACACCCCAATGATCATT+CGG | + | chr6_4:42876793-42876812 | None:intergenic | 40.0% | |
| !!! | ATCTTCAGCATTGGTGCTTT+TGG | - | chr6_4:42876820-42876839 | Msa0988600:CDS | 40.0% |
| !!! | TCTTCAGCATTGGTGCTTTT+GGG | - | chr6_4:42876821-42876840 | Msa0988600:CDS | 40.0% |
| AGGTCGGAGAAGACTAAAAT+TGG | - | chr6_4:42877529-42877548 | Msa0988600:CDS | 40.0% | |
| GGTCGGAGAAGACTAAAATT+GGG | - | chr6_4:42877530-42877549 | Msa0988600:CDS | 40.0% | |
| GAAGACTAAAATTGGGAGCA+TGG | - | chr6_4:42877537-42877556 | Msa0988600:CDS | 40.0% | |
| GCTTTAGTGAGCACATTAGT+CGG | - | chr6_4:42877568-42877587 | Msa0988600:CDS | 40.0% | |
| CAACAAGTAGTTCGTTCAAC+CGG | - | chr6_4:42877703-42877722 | Msa0988600:intron | 40.0% | |
| CTTCTAGTGGCTTTCTTACT+TGG | - | chr6_4:42877730-42877749 | Msa0988600:intron | 40.0% | |
| ATGGTACCTATGAGATCTCT+TGG | - | chr6_4:42878028-42878047 | Msa0988600:intron | 40.0% | |
| ! | AAAGTTGCAGCAGCTCTAAT+GGG | - | chr6_4:42878064-42878083 | Msa0988600:intron | 40.0% |
| ! | GCTCTAATGGGTAGCTATAT+TGG | - | chr6_4:42878076-42878095 | Msa0988600:intron | 40.0% |
| ! | CTAATGGGTAGCTATATTGG+TGG | - | chr6_4:42878079-42878098 | Msa0988600:intron | 40.0% |
| !!! | GCTAGCTAGTTTTGGTTTCT+TGG | - | chr6_4:42878822-42878841 | Msa0988600:intron | 40.0% |
| AAAATAGTACCAGTGGTTGG+TGG | + | chr6_4:42879078-42879097 | None:intergenic | 40.0% | |
| ! | TGTGTTTGGGCCAGAATTTT+TGG | - | chr6_4:42879145-42879164 | Msa0988600:CDS | 40.0% |
| ! | CGCTGCAAACTTTGTTATCA+AGG | - | chr6_4:42879352-42879371 | Msa0988600:intron | 40.0% |
| ATAAGGGGACTAATCAGCTT+TGG | + | chr6_4:42879768-42879787 | None:intergenic | 40.0% | |
| AGTATGACCAGCAGGTATAA+GGG | + | chr6_4:42879784-42879803 | None:intergenic | 40.0% | |
| TGTTACCTGCATTAAGACCA+AGG | + | chr6_4:42879811-42879830 | None:intergenic | 40.0% | |
| !!! | CAGGTATTTTTTGTGGTGGT+TGG | - | chr6_4:42880233-42880252 | Msa0988600:intron | 40.0% |
| TGAATATACTTGGGGCAGTT+TGG | + | chr6_4:42880286-42880305 | None:intergenic | 40.0% | |
| TGGGAATCTTTAGTTGTTCC+TGG | - | chr6_4:42880455-42880474 | Msa0988600:CDS | 40.0% | |
| GTTGTTCCTGGAATTCTAAC+CGG | - | chr6_4:42880467-42880486 | Msa0988600:CDS | 40.0% | |
| ! | AAAATGCCGGTTAGAATTCC+AGG | + | chr6_4:42880476-42880495 | None:intergenic | 40.0% |
| ! | GGAATTCTAACCGGCATTTT+TGG | - | chr6_4:42880476-42880495 | Msa0988600:CDS | 40.0% |
| TGTTGAGAGAGAACAGTGAC+AGG | + | chr6_4:42876571-42876590 | None:intergenic | 45.0% | |
| ! | ATTGTCGTGGTCGTGTTTTG+AGG | + | chr6_4:42876688-42876707 | None:intergenic | 45.0% |
| CAGATACGAGGTAATTGTCG+TGG | + | chr6_4:42876701-42876720 | None:intergenic | 45.0% | |
| AGGTTCCTTTGTCAGATACG+AGG | + | chr6_4:42876713-42876732 | None:intergenic | 45.0% | |
| ! | CGAATGATCATTGGGGTGTT+TGG | - | chr6_4:42876791-42876810 | Msa0988600:CDS | 45.0% |
| TGGTCTGCTATCTTCAGCAT+TGG | - | chr6_4:42876811-42876830 | Msa0988600:CDS | 45.0% | |
| !!! | GCATTGGTGCTTTTGGGATT+TGG | - | chr6_4:42876827-42876846 | Msa0988600:CDS | 45.0% |
| !!! | TTAGTTTTAAACTGCGGCCG+CGG | - | chr6_4:42877300-42877319 | Msa0988600:intron | 45.0% |
| AAGGACAACAACTGAATCCG+CGG | + | chr6_4:42877320-42877339 | None:intergenic | 45.0% | |
| GAATATGCAGGTGCATCATG+TGG | + | chr6_4:42877622-42877641 | None:intergenic | 45.0% | |
| TGTCAGACATCAACGCATGT+TGG | + | chr6_4:42877818-42877837 | None:intergenic | 45.0% | |
| TCAGGACCAAGAGATCTCAT+AGG | + | chr6_4:42878037-42878056 | None:intergenic | 45.0% | |
| GATCTCTTGGTCCTGATAAC+TGG | - | chr6_4:42878041-42878060 | Msa0988600:intron | 45.0% | |
| GCTGCAACTTTCCAGTTATC+AGG | + | chr6_4:42878055-42878074 | None:intergenic | 45.0% | |
| ! | GAAAGTTGCAGCAGCTCTAA+TGG | - | chr6_4:42878063-42878082 | Msa0988600:intron | 45.0% |
| CACTGTGAACCTTGACATTC+TGG | - | chr6_4:42878332-42878351 | Msa0988600:intron | 45.0% | |
| GATCTTAACAACCACCGTTG+TGG | + | chr6_4:42878389-42878408 | None:intergenic | 45.0% | |
| !! | GATGAGTCGCTAGCTAGTTT+TGG | - | chr6_4:42878814-42878833 | Msa0988600:intron | 45.0% |
| !!! | TCTGCATCAGTTTTAGCTGC+AGG | - | chr6_4:42878970-42878989 | Msa0988600:intron | 45.0% |
| !!! | ATCAGTTTTAGCTGCAGGAG+TGG | - | chr6_4:42878975-42878994 | Msa0988600:intron | 45.0% |
| AGGGAAGATGTAGGCAAATG+TGG | - | chr6_4:42879372-42879391 | Msa0988600:intron | 45.0% | |
| GTAGGCAAATGTGGTCACAA+TGG | - | chr6_4:42879381-42879400 | Msa0988600:intron | 45.0% | |
| GCAGTCTACAATCGCAATTG+CGG | + | chr6_4:42879440-42879459 | None:intergenic | 45.0% | |
| ATACAAGGAGGAACTCTTCC+AGG | - | chr6_4:42879705-42879724 | Msa0988600:intron | 45.0% | |
| ACGATGATTGCAGTTACTCC+TGG | + | chr6_4:42879726-42879745 | None:intergenic | 45.0% | |
| ! | AATCAGCTTTGGTGCAAGAG+TGG | + | chr6_4:42879757-42879776 | None:intergenic | 45.0% |
| ATTAGTCCCCTTATACCTGC+TGG | - | chr6_4:42879774-42879793 | Msa0988600:intron | 45.0% | |
| GTATGACCAGCAGGTATAAG+GGG | + | chr6_4:42879783-42879802 | None:intergenic | 45.0% | |
| CAGTATGACCAGCAGGTATA+AGG | + | chr6_4:42879785-42879804 | None:intergenic | 45.0% | |
| !! | TGTTGCCTTGGTCTTAATGC+AGG | - | chr6_4:42879803-42879822 | Msa0988600:intron | 45.0% |
| GCATCAAACGCGAATATTGG+CGG | - | chr6_4:42880395-42880414 | Msa0988600:CDS | 45.0% | |
| CCATTCCACAAGCTGTTGTA+GGG | + | chr6_4:42880421-42880440 | None:intergenic | 45.0% | |
| GCAATTGATGAGGTAGGAGA+TGG | + | chr6_4:42880688-42880707 | None:intergenic | 45.0% | |
| ! | GAGAGACATTGGTGTCTGTG+TGG | + | chr6_4:42876536-42876555 | None:intergenic | 50.0% |
| GGGTGTTTGAGGAGAGACAT+TGG | + | chr6_4:42876547-42876566 | None:intergenic | 50.0% | |
| GAGAGAGAACAGTGACAGGT+GGG | + | chr6_4:42876567-42876586 | None:intergenic | 50.0% | |
| TGAGAGAGAACAGTGACAGG+TGG | + | chr6_4:42876568-42876587 | None:intergenic | 50.0% | |
| GCACAATGACTGCAATCGCA+AGG | + | chr6_4:42877339-42877358 | None:intergenic | 50.0% | |
| ! | GCTTGTTGCAACGTGCATTG+CGG | - | chr6_4:42877357-42877376 | Msa0988600:intron | 50.0% |
| GAGCACATTAGTCGGACTTG+CGG | - | chr6_4:42877576-42877595 | Msa0988600:CDS | 50.0% | |
| GGACTTGCGGCAAGTAATCT+TGG | - | chr6_4:42877589-42877608 | Msa0988600:CDS | 50.0% | |
| TTCAACCGGAACGCTTCTAG+TGG | - | chr6_4:42877717-42877736 | Msa0988600:intron | 50.0% | |
| !! | GAAAGCCACTAGAAGCGTTC+CGG | + | chr6_4:42877725-42877744 | None:intergenic | 50.0% |
| GTGGCTTTCTTACTTGGGTC+AGG | - | chr6_4:42877736-42877755 | Msa0988600:intron | 50.0% | |
| AACTCCCTGCAGTCACTAAC+AGG | - | chr6_4:42878630-42878649 | Msa0988600:intron | 50.0% | |
| GACTCCTGTTAGTGACTGCA+GGG | + | chr6_4:42878637-42878656 | None:intergenic | 50.0% | |
| CTAACAGGAGTCGAGTCTAG+TGG | - | chr6_4:42878645-42878664 | Msa0988600:intron | 50.0% | |
| AGGAGTCGAGTCTAGTGGAA+GGG | - | chr6_4:42878650-42878669 | Msa0988600:intron | 50.0% | |
| ! | CAAACCAAGCGCCTCTGAAA+TGG | + | chr6_4:42878950-42878969 | None:intergenic | 50.0% |
| GGCAAATGTGGTCACAATGG+TGG | - | chr6_4:42879384-42879403 | Msa0988600:intron | 50.0% | |
| CGCAATTGCGGCTGCAATAT+AGG | + | chr6_4:42879428-42879447 | None:intergenic | 50.0% | |
| GCAGTAGCTGTCTGTAACAC+AGG | + | chr6_4:42879627-42879646 | None:intergenic | 50.0% | |
| AAGGCAACAGTATGACCAGC+AGG | + | chr6_4:42879792-42879811 | None:intergenic | 50.0% | |
| TGCTGGTCATACTGTTGCCT+TGG | - | chr6_4:42879791-42879810 | Msa0988600:intron | 50.0% | |
| TTTGTGGTGGTTGGAGCTAG+TGG | - | chr6_4:42880242-42880261 | Msa0988600:intron | 50.0% | |
| CCCTACAACAGCTTGTGGAA+TGG | - | chr6_4:42880418-42880437 | Msa0988600:CDS | 50.0% | |
| GCCATTCCACAAGCTGTTGT+AGG | + | chr6_4:42880422-42880441 | None:intergenic | 50.0% | |
| AACAGCTTGTGGAATGGCCA+AGG | - | chr6_4:42880424-42880443 | Msa0988600:CDS | 50.0% | |
| TGTGGAATGGCCAAGGCTAA+AGG | - | chr6_4:42880431-42880450 | Msa0988600:CDS | 50.0% | |
| AATGGCCAAGGCTAAAGGCT+GGG | - | chr6_4:42880436-42880455 | Msa0988600:CDS | 50.0% | |
| AGATTCCCAGCCTTTAGCCT+TGG | + | chr6_4:42880444-42880463 | None:intergenic | 50.0% | |
| CAGTGACAGGTGGGTGTTTG+AGG | + | chr6_4:42876558-42876577 | None:intergenic | 55.0% | |
| ! | ACACGTGGCGTGATGGGATT+GGG | + | chr6_4:42876597-42876616 | None:intergenic | 55.0% |
| GAGAATGTCGGAGTGACACG+TGG | + | chr6_4:42876612-42876631 | None:intergenic | 55.0% | |
| TGCAGCAAATGAGGTCGGTG+TGG | - | chr6_4:42878363-42878382 | Msa0988600:intron | 55.0% | |
| CGACTCCTGTTAGTGACTGC+AGG | + | chr6_4:42878638-42878657 | None:intergenic | 55.0% | |
| CAGGAGTCGAGTCTAGTGGA+AGG | - | chr6_4:42878649-42878668 | Msa0988600:intron | 55.0% | |
| GGAGTCGAGTCTAGTGGAAG+GGG | - | chr6_4:42878651-42878670 | Msa0988600:intron | 55.0% | |
| ! | GTCTAGTGGAAGGGGCTAGT+CGG | - | chr6_4:42878659-42878678 | Msa0988600:intron | 55.0% |
| !! | GTTGCCATTTCAGAGGCGCT+TGG | - | chr6_4:42878943-42878962 | Msa0988600:intron | 55.0% |
| GAATGGCCAAGGCTAAAGGC+TGG | - | chr6_4:42880435-42880454 | Msa0988600:CDS | 55.0% | |
| ! | GACACGTGGCGTGATGGGAT+TGG | + | chr6_4:42876598-42876617 | None:intergenic | 60.0% |
| GGAGTGACACGTGGCGTGAT+GGG | + | chr6_4:42876603-42876622 | None:intergenic | 60.0% | |
| TGAGGTCGGTGTGGCCACAA+CGG | - | chr6_4:42878372-42878391 | Msa0988600:intron | 60.0% | |
| !! | GTTGGTGGTGCAGTCTCTGC+GGG | + | chr6_4:42879063-42879082 | None:intergenic | 60.0% |
| !! | GGTTGGTGGTGCAGTCTCTG+CGG | + | chr6_4:42879064-42879083 | None:intergenic | 60.0% |
| GAGACTGCACCACCAACCAC+TGG | - | chr6_4:42879066-42879085 | Msa0988600:intron | 60.0% | |
| CGGAGTGACACGTGGCGTGA+TGG | + | chr6_4:42876604-42876623 | None:intergenic | 65.0% | |
| GGCGGCCCTACAACAGCTTG+TGG | - | chr6_4:42880413-42880432 | Msa0988600:CDS | 65.0% | |
| GGTCGGTGTGGCCACAACGG+TGG | - | chr6_4:42878375-42878394 | Msa0988600:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 42876467 | 42880754 | 42876467 | ID=Msa0988600;Name=Msa0988600 |
| chr6_4 | mRNA | 42876467 | 42880754 | 42876467 | ID=Msa0988600-mRNA-1;Parent=Msa0988600;Name=Msa0988600-mRNA-1;_AED=0.05;_eAED=0.05;_QI=80|0.6|0.66|1|1|1|6|195|407 |
| chr6_4 | exon | 42876467 | 42876985 | 42876467 | ID=Msa0988600-mRNA-1:exon:9983;Parent=Msa0988600-mRNA-1 |
| chr6_4 | exon | 42877493 | 42877638 | 42877493 | ID=Msa0988600-mRNA-1:exon:9982;Parent=Msa0988600-mRNA-1 |
| chr6_4 | exon | 42878134 | 42878289 | 42878134 | ID=Msa0988600-mRNA-1:exon:9981;Parent=Msa0988600-mRNA-1 |
| chr6_4 | exon | 42879118 | 42879228 | 42879118 | ID=Msa0988600-mRNA-1:exon:9980;Parent=Msa0988600-mRNA-1 |
| chr6_4 | exon | 42879506 | 42879690 | 42879506 | ID=Msa0988600-mRNA-1:exon:9979;Parent=Msa0988600-mRNA-1 |
| chr6_4 | exon | 42880373 | 42880754 | 42880373 | ID=Msa0988600-mRNA-1:exon:9978;Parent=Msa0988600-mRNA-1 |
| chr6_4 | five_prime_UTR | 42880675 | 42880754 | 42880675 | ID=Msa0988600-mRNA-1:five_prime_utr;Parent=Msa0988600-mRNA-1 |
| chr6_4 | CDS | 42880373 | 42880674 | 42880373 | ID=Msa0988600-mRNA-1:cds;Parent=Msa0988600-mRNA-1 |
| chr6_4 | CDS | 42879506 | 42879690 | 42879506 | ID=Msa0988600-mRNA-1:cds;Parent=Msa0988600-mRNA-1 |
| chr6_4 | CDS | 42879118 | 42879228 | 42879118 | ID=Msa0988600-mRNA-1:cds;Parent=Msa0988600-mRNA-1 |
| chr6_4 | CDS | 42878134 | 42878289 | 42878134 | ID=Msa0988600-mRNA-1:cds;Parent=Msa0988600-mRNA-1 |
| chr6_4 | CDS | 42877493 | 42877638 | 42877493 | ID=Msa0988600-mRNA-1:cds;Parent=Msa0988600-mRNA-1 |
| chr6_4 | CDS | 42876662 | 42876985 | 42876662 | ID=Msa0988600-mRNA-1:cds;Parent=Msa0988600-mRNA-1 |
| chr6_4 | three_prime_UTR | 42876467 | 42876661 | 42876467 | ID=Msa0988600-mRNA-1:three_prime_utr;Parent=Msa0988600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
