AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0446110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0446110 MtrunA17_Chr3g0086951 94.845 194 5 1 1 194 1 189 9.66e-127 354
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0446110 AT5G08050.1 62.577 163 46 2 31 192 8 156 1.34e-49 158

Find 47 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATTTGATTTCTCTCTTA+TGG 0.205748 3_3:+21383976 Msa0446110:exon
TGTTGTCGAGGTTGGATTAC+AGG 0.269782 3_3:+21383870 Msa0446110:CDS
GAGACAGAACGAACTGGTTT+GGG 0.346799 3_3:-21382348 None:intergenic
AGAGACAGAACGAACTGGTT+TGG 0.355523 3_3:-21382349 None:intergenic
TGTGTTGTTGGTGGTTCTGC+TGG 0.362863 3_3:+21383910 Msa0446110:CDS
TAAAACTGTAGCTTCTAAAA+AGG 0.383526 3_3:+21382371 Msa0446110:CDS
GTTGCTTTGGTCTGTGTTGT+TGG 0.388658 3_3:+21383898 Msa0446110:CDS
ATTACAGGCTGTGGTTGCTT+TGG 0.392075 3_3:+21383885 Msa0446110:CDS
TAGCGATAATCCTGCTTTCT+CGG 0.404741 3_3:-21383692 None:intergenic
CATTCTTGTGAGGAGTTTAA+CGG 0.405852 3_3:-21383617 None:intergenic
TAAACCTGCTTTCTCTGCCT+TGG 0.422974 3_3:-21383659 None:intergenic
AACCTCGACAACATTATCTT+CGG 0.427394 3_3:-21383860 None:intergenic
CGTTAAACTCCTCACAAGAA+TGG 0.467112 3_3:+21383618 Msa0446110:CDS
GCCATGGATTTGACAAGAAA+AGG 0.471154 3_3:-21382321 None:intergenic
AAGAGTGATCCTGGAGTTGA+TGG 0.471176 3_3:-21383784 None:intergenic
GATCAAGCTGTTACTACAGA+TGG 0.487910 3_3:-21382256 None:intergenic
CTATCAACAATAGAGAAACT+TGG 0.493062 3_3:+21383712 Msa0446110:CDS
CTGAGTGTGAAGAGTGATCC+TGG 0.494258 3_3:-21383793 None:intergenic
ACCTCGACAACATTATCTTC+GGG 0.509562 3_3:-21383859 None:intergenic
GAAGATAATGTTGTCGAGGT+TGG 0.509847 3_3:+21383862 Msa0446110:CDS
AACTGGTTTGGGAGTAGCCA+TGG 0.520152 3_3:-21382337 None:intergenic
TTATCAGCCGCCGAGAAAGC+AGG 0.520670 3_3:+21383682 Msa0446110:CDS
GCTTTGGTCTGTGTTGTTGG+TGG 0.531295 3_3:+21383901 Msa0446110:CDS
CGAGGTTGGATTACAGGCTG+TGG 0.533900 3_3:+21383876 Msa0446110:CDS
GTAGAATAGTGACCATGGAT+TGG 0.535163 3_3:-21382105 None:intergenic
AATTCAACTGTATTCCCACT+TGG 0.537612 3_3:+21383559 Msa0446110:CDS
CTCTCAAAAGCAGAAGAACT+CGG 0.539080 3_3:+21383739 Msa0446110:CDS
TTAACCAAGGCAGAGAAAGC+AGG 0.541705 3_3:+21383655 Msa0446110:CDS
GCTACTGATCCATCAACTCC+AGG 0.551246 3_3:+21383775 Msa0446110:CDS
ATTCAACTGTATTCCCACTT+GGG 0.553323 3_3:+21383560 Msa0446110:CDS
ACTTATGATGATGACAATGA+AGG 0.557494 3_3:+21382224 Msa0446110:exon
TCAGTTGTTCCATTCTTGTG+AGG 0.560445 3_3:-21383627 None:intergenic
TCCGTGGTTGTTCCCCAAGT+GGG 0.573088 3_3:-21383573 None:intergenic
CACAATAGAAAACCAATCCA+TGG 0.596432 3_3:+21382093 Msa0446110:five_prime_UTR
TTCAACTGTATTCCCACTTG+GGG 0.603934 3_3:+21383561 Msa0446110:CDS
TCCCGAAGATAATGTTGTCG+AGG 0.604575 3_3:+21383858 Msa0446110:CDS
CTCCGTGGTTGTTCCCCAAG+TGG 0.614234 3_3:-21383574 None:intergenic
GGAACAAGATAAACAAACAA+AGG 0.614999 3_3:-21383838 None:intergenic
ATGAGGTAGAATAGTGACCA+TGG 0.616340 3_3:-21382110 None:intergenic
GATGATGATAATTGATGATG+AGG 0.627667 3_3:-21382127 None:intergenic
TCCCACTTGGGGAACAACCA+CGG 0.646839 3_3:+21383572 Msa0446110:CDS
GTTACTACAGATGGATGCTG+AGG 0.660105 3_3:-21382247 None:intergenic
ATAATACAATAAGATAACAA+AGG 0.670551 3_3:-21384012 None:intergenic
TCATAAGCAATGATAATGAG+TGG 0.685974 3_3:-21382149 None:intergenic
GTCGATGTTACAGCACTCCG+TGG 0.693005 3_3:-21383589 None:intergenic
CGATAATCCTGCTTTCTCGG+CGG 0.695629 3_3:-21383689 None:intergenic
ACAACTGAGACTGTTAACCA+AGG 0.730927 3_3:+21383642 Msa0446110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGCATAATGATAAA+AGG - chr3_3:21382471-21382490 None:intergenic 15.0%
!! TAACATAAAAATTTCTATGT+AGG - chr3_3:21382946-21382965 None:intergenic 15.0%
!! ATAATACAATAAGATAACAA+AGG - chr3_3:21384015-21384034 None:intergenic 15.0%
!!! ATTGTTCAAAGTTTTATATA+TGG + chr3_3:21384084-21384103 Msa0446110:three_prime_UTR 15.0%
!! TAATATTGCATAATGATAAA+AGG - chr3_3:21382471-21382490 None:intergenic 15.0%
!! TAACATAAAAATTTCTATGT+AGG - chr3_3:21382946-21382965 None:intergenic 15.0%
!! ATAATACAATAAGATAACAA+AGG - chr3_3:21384015-21384034 None:intergenic 15.0%
!!! ATTGTTCAAAGTTTTATATA+TGG + chr3_3:21384084-21384103 Msa0446110:three_prime_UTR 15.0%
!!! TATATTTTCAAAAAATCACC+TGG + chr3_3:21382888-21382907 Msa0446110:intron 20.0%
!!! ATGTTATCAAACTTTTAAGT+AGG + chr3_3:21382960-21382979 Msa0446110:intron 20.0%
!!! TAGAAATGCTTTGTTTAAAT+AGG - chr3_3:21383085-21383104 None:intergenic 20.0%
!!! ATTATGTAAACCATGTTTTT+TGG + chr3_3:21383114-21383133 Msa0446110:intron 20.0%
!!! TTATGTAAACCATGTTTTTT+GGG + chr3_3:21383115-21383134 Msa0446110:intron 20.0%
!!! TTATTTTATTTTCTGCAAGT+TGG - chr3_3:21383959-21383978 None:intergenic 20.0%
!!! TAAATTTGATTTCTCTCTTA+TGG + chr3_3:21383976-21383995 Msa0446110:exon 20.0%
!!! CAAAGTTTTATATATGGAAA+TGG + chr3_3:21384090-21384109 Msa0446110:three_prime_UTR 20.0%
!!! TATATTTTCAAAAAATCACC+TGG + chr3_3:21382888-21382907 Msa0446110:intron 20.0%
!!! ATGTTATCAAACTTTTAAGT+AGG + chr3_3:21382960-21382979 Msa0446110:intron 20.0%
!!! TAGAAATGCTTTGTTTAAAT+AGG - chr3_3:21383085-21383104 None:intergenic 20.0%
!!! ATTATGTAAACCATGTTTTT+TGG + chr3_3:21383114-21383133 Msa0446110:intron 20.0%
!!! TTATGTAAACCATGTTTTTT+GGG + chr3_3:21383115-21383134 Msa0446110:intron 20.0%
!!! TTATTTTATTTTCTGCAAGT+TGG - chr3_3:21383959-21383978 None:intergenic 20.0%
!!! TAAATTTGATTTCTCTCTTA+TGG + chr3_3:21383976-21383995 Msa0446110:exon 20.0%
!!! CAAAGTTTTATATATGGAAA+TGG + chr3_3:21384090-21384109 Msa0446110:three_prime_UTR 20.0%
!! TAAAACTGTAGCTTCTAAAA+AGG + chr3_3:21382371-21382390 Msa0446110:CDS 25.0%
! TTATGCAATATTATACTGTG+TGG + chr3_3:21382478-21382497 Msa0446110:intron 25.0%
! TACCACTTTAATTATGAGAA+AGG + chr3_3:21382528-21382547 Msa0446110:intron 25.0%
! AACCTTTCTCATAATTAAAG+TGG - chr3_3:21382533-21382552 None:intergenic 25.0%
!!! CATAAACCGTAATTTGTTAT+AGG + chr3_3:21382666-21382685 Msa0446110:intron 25.0%
! CAAACTCCTATAACAAATTA+CGG - chr3_3:21382675-21382694 None:intergenic 25.0%
!! AGGAATCTTTAGGAAAAAAA+GGG + chr3_3:21382862-21382881 Msa0446110:intron 25.0%
! ATTGAAAAGGTTAAATAACC+AGG - chr3_3:21382909-21382928 None:intergenic 25.0%
!! AAACAAAGCATTTCTAAACA+TGG + chr3_3:21383089-21383108 Msa0446110:intron 25.0%
!! TAGAATTTTCCCAAAAAACA+TGG - chr3_3:21383127-21383146 None:intergenic 25.0%
!!! TGTTTTTTGGGAAAATTCTA+TGG + chr3_3:21383127-21383146 Msa0446110:intron 25.0%
!!! TACTAGTTCTAAAAAACATC+TGG + chr3_3:21383282-21383301 Msa0446110:intron 25.0%
!!! ACTAGTTCTAAAAAACATCT+GGG + chr3_3:21383283-21383302 Msa0446110:intron 25.0%
!!! AGCTTTGTTTTACTTCTTTT+AGG + chr3_3:21383814-21383833 Msa0446110:CDS 25.0%
!! TAAAACTGTAGCTTCTAAAA+AGG + chr3_3:21382371-21382390 Msa0446110:CDS 25.0%
! TTATGCAATATTATACTGTG+TGG + chr3_3:21382478-21382497 Msa0446110:intron 25.0%
! TACCACTTTAATTATGAGAA+AGG + chr3_3:21382528-21382547 Msa0446110:intron 25.0%
! AACCTTTCTCATAATTAAAG+TGG - chr3_3:21382533-21382552 None:intergenic 25.0%
!!! CATAAACCGTAATTTGTTAT+AGG + chr3_3:21382666-21382685 Msa0446110:intron 25.0%
! CAAACTCCTATAACAAATTA+CGG - chr3_3:21382675-21382694 None:intergenic 25.0%
!! AGGAATCTTTAGGAAAAAAA+GGG + chr3_3:21382862-21382881 Msa0446110:intron 25.0%
! ATTGAAAAGGTTAAATAACC+AGG - chr3_3:21382909-21382928 None:intergenic 25.0%
!! AAACAAAGCATTTCTAAACA+TGG + chr3_3:21383089-21383108 Msa0446110:intron 25.0%
!! TAGAATTTTCCCAAAAAACA+TGG - chr3_3:21383127-21383146 None:intergenic 25.0%
!!! TGTTTTTTGGGAAAATTCTA+TGG + chr3_3:21383127-21383146 Msa0446110:intron 25.0%
!!! TACTAGTTCTAAAAAACATC+TGG + chr3_3:21383282-21383301 Msa0446110:intron 25.0%
!!! ACTAGTTCTAAAAAACATCT+GGG + chr3_3:21383283-21383302 Msa0446110:intron 25.0%
!!! AGCTTTGTTTTACTTCTTTT+AGG + chr3_3:21383814-21383833 Msa0446110:CDS 25.0%
!! GATGATGATAATTGATGATG+AGG - chr3_3:21382130-21382149 None:intergenic 30.0%
! TCATAAGCAATGATAATGAG+TGG - chr3_3:21382152-21382171 None:intergenic 30.0%
! ACTTATGATGATGACAATGA+AGG + chr3_3:21382224-21382243 Msa0446110:exon 30.0%
!! TCATCAAAGAGCATTAAAAC+TGG - chr3_3:21382626-21382645 None:intergenic 30.0%
! TGCTCTTTGATGATATGATA+TGG + chr3_3:21382633-21382652 Msa0446110:intron 30.0%
ATTACGGTTTATGTATACCT+AGG - chr3_3:21382659-21382678 None:intergenic 30.0%
! ACAGACTTGTGTAAAACTTT+TGG + chr3_3:21382716-21382735 Msa0446110:intron 30.0%
ACTCATATGGTAAAAGACTA+AGG + chr3_3:21382751-21382770 Msa0446110:intron 30.0%
! CAGGAATCTTTAGGAAAAAA+AGG + chr3_3:21382861-21382880 Msa0446110:intron 30.0%
!! ATGCTTTGTTTAAATAGGTC+TGG - chr3_3:21383080-21383099 None:intergenic 30.0%
!! TTTTTGGGAAAATTCTATGG+TGG + chr3_3:21383130-21383149 Msa0446110:intron 30.0%
TGTGTGTTCTATCAAAACAA+AGG - chr3_3:21383347-21383366 None:intergenic 30.0%
!! TCTCTACGATAATTTTCAAG+TGG + chr3_3:21383457-21383476 Msa0446110:intron 30.0%
! ACTTTTCTCACCAAAAAAAC+AGG - chr3_3:21383499-21383518 None:intergenic 30.0%
CTATCAACAATAGAGAAACT+TGG + chr3_3:21383712-21383731 Msa0446110:CDS 30.0%
GGAACAAGATAAACAAACAA+AGG - chr3_3:21383841-21383860 None:intergenic 30.0%
!! GATGATGATAATTGATGATG+AGG - chr3_3:21382130-21382149 None:intergenic 30.0%
! TCATAAGCAATGATAATGAG+TGG - chr3_3:21382152-21382171 None:intergenic 30.0%
! ACTTATGATGATGACAATGA+AGG + chr3_3:21382224-21382243 Msa0446110:exon 30.0%
!! TCATCAAAGAGCATTAAAAC+TGG - chr3_3:21382626-21382645 None:intergenic 30.0%
! TGCTCTTTGATGATATGATA+TGG + chr3_3:21382633-21382652 Msa0446110:intron 30.0%
ATTACGGTTTATGTATACCT+AGG - chr3_3:21382659-21382678 None:intergenic 30.0%
! ACAGACTTGTGTAAAACTTT+TGG + chr3_3:21382716-21382735 Msa0446110:intron 30.0%
ACTCATATGGTAAAAGACTA+AGG + chr3_3:21382751-21382770 Msa0446110:intron 30.0%
! CAGGAATCTTTAGGAAAAAA+AGG + chr3_3:21382861-21382880 Msa0446110:intron 30.0%
!! ATGCTTTGTTTAAATAGGTC+TGG - chr3_3:21383080-21383099 None:intergenic 30.0%
!! TTTTTGGGAAAATTCTATGG+TGG + chr3_3:21383130-21383149 Msa0446110:intron 30.0%
TGTGTGTTCTATCAAAACAA+AGG - chr3_3:21383347-21383366 None:intergenic 30.0%
!! TCTCTACGATAATTTTCAAG+TGG + chr3_3:21383457-21383476 Msa0446110:intron 30.0%
! ACTTTTCTCACCAAAAAAAC+AGG - chr3_3:21383499-21383518 None:intergenic 30.0%
CTATCAACAATAGAGAAACT+TGG + chr3_3:21383712-21383731 Msa0446110:CDS 30.0%
GGAACAAGATAAACAAACAA+AGG - chr3_3:21383841-21383860 None:intergenic 30.0%
CACAATAGAAAACCAATCCA+TGG + chr3_3:21382093-21382112 Msa0446110:five_prime_UTR 35.0%
! ACCTTTTCTTGTCAAATCCA+TGG + chr3_3:21382320-21382339 Msa0446110:CDS 35.0%
! TTGATGATATGATATGGCCT+AGG + chr3_3:21382639-21382658 Msa0446110:intron 35.0%
! ACTTGTGTAAAACTTTTGGC+CGG + chr3_3:21382720-21382739 Msa0446110:intron 35.0%
ACCATATGAGTTGTACTTAC+CGG - chr3_3:21382742-21382761 None:intergenic 35.0%
!! ACACAAAGTGTTGAGAAGTA+GGG - chr3_3:21382818-21382837 None:intergenic 35.0%
! GTTTTGTAGCAGGAATCTTT+AGG + chr3_3:21382852-21382871 Msa0446110:intron 35.0%
TTTAAGTAGGCTAATACGTC+AGG + chr3_3:21382973-21382992 Msa0446110:intron 35.0%
! TAGTACTTGTCAGACCTTTT+CGG - chr3_3:21383002-21383021 None:intergenic 35.0%
GGTCTGACAAGTACTAAAAA+TGG + chr3_3:21383006-21383025 Msa0446110:intron 35.0%
GTACTATGAGTCATAGTTTC+AGG - chr3_3:21383200-21383219 None:intergenic 35.0%
CTATGACTCATAGTACTTGT+TGG + chr3_3:21383204-21383223 Msa0446110:intron 35.0%
TCTCACTCATTAAGACAAAG+AGG - chr3_3:21383247-21383266 None:intergenic 35.0%
CTTTGTCTTAATGAGTGAGA+CGG + chr3_3:21383247-21383266 Msa0446110:intron 35.0%
! TGTTGCTGTTATAGGTGATA+CGG - chr3_3:21383382-21383401 None:intergenic 35.0%
! ACAGTCATTGTTGCTGTTAT+AGG - chr3_3:21383390-21383409 None:intergenic 35.0%
!! CATCGGTTGTTACTTGTTAT+TGG + chr3_3:21383432-21383451 Msa0446110:intron 35.0%
!! AAAAAAACAGGCTGGTTCTA+CGG - chr3_3:21383487-21383506 None:intergenic 35.0%
AATTCAACTGTATTCCCACT+TGG + chr3_3:21383559-21383578 Msa0446110:CDS 35.0%
ATTCAACTGTATTCCCACTT+GGG + chr3_3:21383560-21383579 Msa0446110:CDS 35.0%
CATTCTTGTGAGGAGTTTAA+CGG - chr3_3:21383620-21383639 None:intergenic 35.0%
AACCTCGACAACATTATCTT+CGG - chr3_3:21383863-21383882 None:intergenic 35.0%
CACAATAGAAAACCAATCCA+TGG + chr3_3:21382093-21382112 Msa0446110:five_prime_UTR 35.0%
! ACCTTTTCTTGTCAAATCCA+TGG + chr3_3:21382320-21382339 Msa0446110:CDS 35.0%
! TTGATGATATGATATGGCCT+AGG + chr3_3:21382639-21382658 Msa0446110:intron 35.0%
! ACTTGTGTAAAACTTTTGGC+CGG + chr3_3:21382720-21382739 Msa0446110:intron 35.0%
ACCATATGAGTTGTACTTAC+CGG - chr3_3:21382742-21382761 None:intergenic 35.0%
!! ACACAAAGTGTTGAGAAGTA+GGG - chr3_3:21382818-21382837 None:intergenic 35.0%
! GTTTTGTAGCAGGAATCTTT+AGG + chr3_3:21382852-21382871 Msa0446110:intron 35.0%
TTTAAGTAGGCTAATACGTC+AGG + chr3_3:21382973-21382992 Msa0446110:intron 35.0%
! TAGTACTTGTCAGACCTTTT+CGG - chr3_3:21383002-21383021 None:intergenic 35.0%
GGTCTGACAAGTACTAAAAA+TGG + chr3_3:21383006-21383025 Msa0446110:intron 35.0%
GTACTATGAGTCATAGTTTC+AGG - chr3_3:21383200-21383219 None:intergenic 35.0%
CTATGACTCATAGTACTTGT+TGG + chr3_3:21383204-21383223 Msa0446110:intron 35.0%
TCTCACTCATTAAGACAAAG+AGG - chr3_3:21383247-21383266 None:intergenic 35.0%
CTTTGTCTTAATGAGTGAGA+CGG + chr3_3:21383247-21383266 Msa0446110:intron 35.0%
! TGTTGCTGTTATAGGTGATA+CGG - chr3_3:21383382-21383401 None:intergenic 35.0%
! ACAGTCATTGTTGCTGTTAT+AGG - chr3_3:21383390-21383409 None:intergenic 35.0%
!! CATCGGTTGTTACTTGTTAT+TGG + chr3_3:21383432-21383451 Msa0446110:intron 35.0%
!! AAAAAAACAGGCTGGTTCTA+CGG - chr3_3:21383487-21383506 None:intergenic 35.0%
AATTCAACTGTATTCCCACT+TGG + chr3_3:21383559-21383578 Msa0446110:CDS 35.0%
ATTCAACTGTATTCCCACTT+GGG + chr3_3:21383560-21383579 Msa0446110:CDS 35.0%
CATTCTTGTGAGGAGTTTAA+CGG - chr3_3:21383620-21383639 None:intergenic 35.0%
AACCTCGACAACATTATCTT+CGG - chr3_3:21383863-21383882 None:intergenic 35.0%
GTAGAATAGTGACCATGGAT+TGG - chr3_3:21382108-21382127 None:intergenic 40.0%
ATGAGGTAGAATAGTGACCA+TGG - chr3_3:21382113-21382132 None:intergenic 40.0%
GATCAAGCTGTTACTACAGA+TGG - chr3_3:21382259-21382278 None:intergenic 40.0%
!! AGAGTTTTGTGTTGAAGGAG+AGG - chr3_3:21382289-21382308 None:intergenic 40.0%
!! GTGTGAGAGTTTTGTGTTGA+AGG - chr3_3:21382294-21382313 None:intergenic 40.0%
GCCATGGATTTGACAAGAAA+AGG - chr3_3:21382324-21382343 None:intergenic 40.0%
!!! GTTTTAGAGACAGAACGAAC+TGG - chr3_3:21382357-21382376 None:intergenic 40.0%
!! CATTTGATTTGCTCAGAAGC+AGG + chr3_3:21382777-21382796 Msa0446110:intron 40.0%
! AGTGTTGAGAAGTAGGGAAT+CGG - chr3_3:21382812-21382831 None:intergenic 40.0%
!! CACACAAAGTGTTGAGAAGT+AGG - chr3_3:21382819-21382838 None:intergenic 40.0%
!!! GTAGAACCAGCCTGTTTTTT+TGG + chr3_3:21383486-21383505 Msa0446110:intron 40.0%
TTCTCACCAAAAAAACAGGC+TGG - chr3_3:21383495-21383514 None:intergenic 40.0%
TTCAACTGTATTCCCACTTG+GGG + chr3_3:21383561-21383580 Msa0446110:CDS 40.0%
CGTTAAACTCCTCACAAGAA+TGG + chr3_3:21383618-21383637 Msa0446110:CDS 40.0%
TCAGTTGTTCCATTCTTGTG+AGG - chr3_3:21383630-21383649 None:intergenic 40.0%
ACAACTGAGACTGTTAACCA+AGG + chr3_3:21383642-21383661 Msa0446110:CDS 40.0%
TAGCGATAATCCTGCTTTCT+CGG - chr3_3:21383695-21383714 None:intergenic 40.0%
CTCTCAAAAGCAGAAGAACT+CGG + chr3_3:21383739-21383758 Msa0446110:CDS 40.0%
ACCTCGACAACATTATCTTC+GGG - chr3_3:21383862-21383881 None:intergenic 40.0%
GAAGATAATGTTGTCGAGGT+TGG + chr3_3:21383862-21383881 Msa0446110:CDS 40.0%
GTAGAATAGTGACCATGGAT+TGG - chr3_3:21382108-21382127 None:intergenic 40.0%
ATGAGGTAGAATAGTGACCA+TGG - chr3_3:21382113-21382132 None:intergenic 40.0%
GATCAAGCTGTTACTACAGA+TGG - chr3_3:21382259-21382278 None:intergenic 40.0%
!! AGAGTTTTGTGTTGAAGGAG+AGG - chr3_3:21382289-21382308 None:intergenic 40.0%
!! GTGTGAGAGTTTTGTGTTGA+AGG - chr3_3:21382294-21382313 None:intergenic 40.0%
GCCATGGATTTGACAAGAAA+AGG - chr3_3:21382324-21382343 None:intergenic 40.0%
!!! GTTTTAGAGACAGAACGAAC+TGG - chr3_3:21382357-21382376 None:intergenic 40.0%
!! CATTTGATTTGCTCAGAAGC+AGG + chr3_3:21382777-21382796 Msa0446110:intron 40.0%
! AGTGTTGAGAAGTAGGGAAT+CGG - chr3_3:21382812-21382831 None:intergenic 40.0%
!! CACACAAAGTGTTGAGAAGT+AGG - chr3_3:21382819-21382838 None:intergenic 40.0%
!!! GTAGAACCAGCCTGTTTTTT+TGG + chr3_3:21383486-21383505 Msa0446110:intron 40.0%
TTCTCACCAAAAAAACAGGC+TGG - chr3_3:21383495-21383514 None:intergenic 40.0%
TTCAACTGTATTCCCACTTG+GGG + chr3_3:21383561-21383580 Msa0446110:CDS 40.0%
CGTTAAACTCCTCACAAGAA+TGG + chr3_3:21383618-21383637 Msa0446110:CDS 40.0%
TCAGTTGTTCCATTCTTGTG+AGG - chr3_3:21383630-21383649 None:intergenic 40.0%
ACAACTGAGACTGTTAACCA+AGG + chr3_3:21383642-21383661 Msa0446110:CDS 40.0%
TAGCGATAATCCTGCTTTCT+CGG - chr3_3:21383695-21383714 None:intergenic 40.0%
CTCTCAAAAGCAGAAGAACT+CGG + chr3_3:21383739-21383758 Msa0446110:CDS 40.0%
ACCTCGACAACATTATCTTC+GGG - chr3_3:21383862-21383881 None:intergenic 40.0%
GAAGATAATGTTGTCGAGGT+TGG + chr3_3:21383862-21383881 Msa0446110:CDS 40.0%
GTTACTACAGATGGATGCTG+AGG - chr3_3:21382250-21382269 None:intergenic 45.0%
! GAGACAGAACGAACTGGTTT+GGG - chr3_3:21382351-21382370 None:intergenic 45.0%
AGAGACAGAACGAACTGGTT+TGG - chr3_3:21382352-21382371 None:intergenic 45.0%
GCCGGTAAGTACAACTCATA+TGG + chr3_3:21382738-21382757 Msa0446110:intron 45.0%
GTGTTGAGAAGTAGGGAATC+GGG - chr3_3:21382811-21382830 None:intergenic 45.0%
!! GTGAGTGTGAGTTTTGTAGC+AGG + chr3_3:21382842-21382861 Msa0446110:intron 45.0%
! TACTTGTCAGACCTTTTCGG+AGG - chr3_3:21382999-21383018 None:intergenic 45.0%
CTATGGTGGTCCACTTAGAT+AGG + chr3_3:21383144-21383163 Msa0446110:intron 45.0%
TCCACTTAGATAGGTGTCCA+CGG + chr3_3:21383153-21383172 Msa0446110:intron 45.0%
AGGTGATACGGTGACTTGAT+TGG - chr3_3:21383370-21383389 None:intergenic 45.0%
TCTACTTCCAAGAGCGACAT+CGG + chr3_3:21383415-21383434 Msa0446110:intron 45.0%
TTAACCAAGGCAGAGAAAGC+AGG + chr3_3:21383655-21383674 Msa0446110:CDS 45.0%
TAAACCTGCTTTCTCTGCCT+TGG - chr3_3:21383662-21383681 None:intergenic 45.0%
!! CGAGTTCTTCTGCTTTTGAG+AGG - chr3_3:21383741-21383760 None:intergenic 45.0%
AAGAGTGATCCTGGAGTTGA+TGG - chr3_3:21383787-21383806 None:intergenic 45.0%
TCCCGAAGATAATGTTGTCG+AGG + chr3_3:21383858-21383877 Msa0446110:CDS 45.0%
TGTTGTCGAGGTTGGATTAC+AGG + chr3_3:21383870-21383889 Msa0446110:CDS 45.0%
ATTACAGGCTGTGGTTGCTT+TGG + chr3_3:21383885-21383904 Msa0446110:CDS 45.0%
! GTTGCTTTGGTCTGTGTTGT+TGG + chr3_3:21383898-21383917 Msa0446110:CDS 45.0%
GTTACTACAGATGGATGCTG+AGG - chr3_3:21382250-21382269 None:intergenic 45.0%
! GAGACAGAACGAACTGGTTT+GGG - chr3_3:21382351-21382370 None:intergenic 45.0%
AGAGACAGAACGAACTGGTT+TGG - chr3_3:21382352-21382371 None:intergenic 45.0%
GCCGGTAAGTACAACTCATA+TGG + chr3_3:21382738-21382757 Msa0446110:intron 45.0%
GTGTTGAGAAGTAGGGAATC+GGG - chr3_3:21382811-21382830 None:intergenic 45.0%
!! GTGAGTGTGAGTTTTGTAGC+AGG + chr3_3:21382842-21382861 Msa0446110:intron 45.0%
! TACTTGTCAGACCTTTTCGG+AGG - chr3_3:21382999-21383018 None:intergenic 45.0%
CTATGGTGGTCCACTTAGAT+AGG + chr3_3:21383144-21383163 Msa0446110:intron 45.0%
TCCACTTAGATAGGTGTCCA+CGG + chr3_3:21383153-21383172 Msa0446110:intron 45.0%
AGGTGATACGGTGACTTGAT+TGG - chr3_3:21383370-21383389 None:intergenic 45.0%
TCTACTTCCAAGAGCGACAT+CGG + chr3_3:21383415-21383434 Msa0446110:intron 45.0%
TTAACCAAGGCAGAGAAAGC+AGG + chr3_3:21383655-21383674 Msa0446110:CDS 45.0%
TAAACCTGCTTTCTCTGCCT+TGG - chr3_3:21383662-21383681 None:intergenic 45.0%
!! CGAGTTCTTCTGCTTTTGAG+AGG - chr3_3:21383741-21383760 None:intergenic 45.0%
AAGAGTGATCCTGGAGTTGA+TGG - chr3_3:21383787-21383806 None:intergenic 45.0%
TCCCGAAGATAATGTTGTCG+AGG + chr3_3:21383858-21383877 Msa0446110:CDS 45.0%
TGTTGTCGAGGTTGGATTAC+AGG + chr3_3:21383870-21383889 Msa0446110:CDS 45.0%
ATTACAGGCTGTGGTTGCTT+TGG + chr3_3:21383885-21383904 Msa0446110:CDS 45.0%
! GTTGCTTTGGTCTGTGTTGT+TGG + chr3_3:21383898-21383917 Msa0446110:CDS 45.0%
!! TAATAATTAAATTATTGAAA+AGG - chr3_3:21382922-21382941 None:intergenic 5.0%
!! TAATAATTAAATTATTGAAA+AGG - chr3_3:21382922-21382941 None:intergenic 5.0%
!! AACTGGTTTGGGAGTAGCCA+TGG - chr3_3:21382340-21382359 None:intergenic 50.0%
AATACGTCAGGCCTCCGAAA+AGG + chr3_3:21382985-21383004 Msa0446110:intron 50.0%
ACCGTGGACACCTATCTAAG+TGG - chr3_3:21383157-21383176 None:intergenic 50.0%
ACTTAGATAGGTGTCCACGG+TGG + chr3_3:21383156-21383175 Msa0446110:intron 50.0%
!! TTTCAAGCGTTGATCCACCG+TGG - chr3_3:21383173-21383192 None:intergenic 50.0%
GTAACAACCGATGTCGCTCT+TGG - chr3_3:21383425-21383444 None:intergenic 50.0%
CGATAATCCTGCTTTCTCGG+CGG - chr3_3:21383692-21383711 None:intergenic 50.0%
GCTACTGATCCATCAACTCC+AGG + chr3_3:21383775-21383794 Msa0446110:CDS 50.0%
CTGAGTGTGAAGAGTGATCC+TGG - chr3_3:21383796-21383815 None:intergenic 50.0%
! GCTTTGGTCTGTGTTGTTGG+TGG + chr3_3:21383901-21383920 Msa0446110:CDS 50.0%
!! TGTGTTGTTGGTGGTTCTGC+TGG + chr3_3:21383910-21383929 Msa0446110:CDS 50.0%
!! AACTGGTTTGGGAGTAGCCA+TGG - chr3_3:21382340-21382359 None:intergenic 50.0%
AATACGTCAGGCCTCCGAAA+AGG + chr3_3:21382985-21383004 Msa0446110:intron 50.0%
ACCGTGGACACCTATCTAAG+TGG - chr3_3:21383157-21383176 None:intergenic 50.0%
ACTTAGATAGGTGTCCACGG+TGG + chr3_3:21383156-21383175 Msa0446110:intron 50.0%
!! TTTCAAGCGTTGATCCACCG+TGG - chr3_3:21383173-21383192 None:intergenic 50.0%
GTAACAACCGATGTCGCTCT+TGG - chr3_3:21383425-21383444 None:intergenic 50.0%
CGATAATCCTGCTTTCTCGG+CGG - chr3_3:21383692-21383711 None:intergenic 50.0%
GCTACTGATCCATCAACTCC+AGG + chr3_3:21383775-21383794 Msa0446110:CDS 50.0%
CTGAGTGTGAAGAGTGATCC+TGG - chr3_3:21383796-21383815 None:intergenic 50.0%
! GCTTTGGTCTGTGTTGTTGG+TGG + chr3_3:21383901-21383920 Msa0446110:CDS 50.0%
!! TGTGTTGTTGGTGGTTCTGC+TGG + chr3_3:21383910-21383929 Msa0446110:CDS 50.0%
GAGTGAGACGGTGACTCGAT+TGG + chr3_3:21383259-21383278 Msa0446110:intron 55.0%
TCCCACTTGGGGAACAACCA+CGG + chr3_3:21383572-21383591 Msa0446110:CDS 55.0%
TCCGTGGTTGTTCCCCAAGT+GGG - chr3_3:21383576-21383595 None:intergenic 55.0%
GTCGATGTTACAGCACTCCG+TGG - chr3_3:21383592-21383611 None:intergenic 55.0%
TTATCAGCCGCCGAGAAAGC+AGG + chr3_3:21383682-21383701 Msa0446110:CDS 55.0%
CGAGGTTGGATTACAGGCTG+TGG + chr3_3:21383876-21383895 Msa0446110:CDS 55.0%
!!! GGTGGTTCTGCTGGTTTTGC+TGG + chr3_3:21383919-21383938 Msa0446110:CDS 55.0%
GAGTGAGACGGTGACTCGAT+TGG + chr3_3:21383259-21383278 Msa0446110:intron 55.0%
TCCCACTTGGGGAACAACCA+CGG + chr3_3:21383572-21383591 Msa0446110:CDS 55.0%
TCCGTGGTTGTTCCCCAAGT+GGG - chr3_3:21383576-21383595 None:intergenic 55.0%
GTCGATGTTACAGCACTCCG+TGG - chr3_3:21383592-21383611 None:intergenic 55.0%
TTATCAGCCGCCGAGAAAGC+AGG + chr3_3:21383682-21383701 Msa0446110:CDS 55.0%
CGAGGTTGGATTACAGGCTG+TGG + chr3_3:21383876-21383895 Msa0446110:CDS 55.0%
!!! GGTGGTTCTGCTGGTTTTGC+TGG + chr3_3:21383919-21383938 Msa0446110:CDS 55.0%
CTCCGTGGTTGTTCCCCAAG+TGG - chr3_3:21383577-21383596 None:intergenic 60.0%
CTCCGTGGTTGTTCCCCAAG+TGG - chr3_3:21383577-21383596 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 21382087 21384193 21382087 ID=Msa0446110;Name=Msa0446110
chr3_3 mRNA 21382087 21384193 21382087 ID=Msa0446110-mRNA-1;Parent=Msa0446110;Name=Msa0446110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=141|1|1|1|1|1|2|215|194
chr3_3 exon 21382087 21382392 21382087 ID=Msa0446110-mRNA-1:exon:4458;Parent=Msa0446110-mRNA-1
chr3_3 exon 21383559 21384193 21383559 ID=Msa0446110-mRNA-1:exon:4459;Parent=Msa0446110-mRNA-1
chr3_3 five_prime_UTR 21382087 21382227 21382087 ID=Msa0446110-mRNA-1:five_prime_utr;Parent=Msa0446110-mRNA-1
chr3_3 CDS 21382228 21382392 21382228 ID=Msa0446110-mRNA-1:cds;Parent=Msa0446110-mRNA-1
chr3_3 CDS 21383559 21383978 21383559 ID=Msa0446110-mRNA-1:cds;Parent=Msa0446110-mRNA-1
chr3_3 three_prime_UTR 21383979 21384193 21383979 ID=Msa0446110-mRNA-1:three_prime_utr;Parent=Msa0446110-mRNA-1
Gene Sequence

>Msa0446110

ATGATGATGACAATGAAGGCCTCAGCATCCATCTGTAGTAACAGCTTGATCTTCTACTCCTCTCCTTCAACACAAAACTCTCACACTTTCTCACCTTTTCTTGTCAAATCCATGGCTACTCCCAAACCAGTTCGTTCTGTCTCTAAAACTGTAGCTTCTAAAAAGAATTCAACTGTATTCCCACTTGGGGAACAACCACGGAGTGCTGTAACATCGACACAATCCGTTAAACTCCTCACAAGAATGGAACAACTGAGACTGTTAACCAAGGCAGAGAAAGCAGGTTTATTATCAGCCGCCGAGAAAGCAGGATTATCGCTATCAACAATAGAGAAACTTGGTCTCCTCTCAAAAGCAGAAGAACTCGGTGTTTTATCAGCTGCTACTGATCCATCAACTCCAGGATCACTCTTCACACTCAGCTTTGTTTTACTTCTTTTAGGTCCTTTGTTTGTTTATCTTGTTCCCGAAGATAATGTTGTCGAGGTTGGATTACAGGCTGTGGTTGCTTTGGTCTGTGTTGTTGGTGGTTCTGCTGGTTTTGCTGGTTCAAGTTTTGTATCCAACTTGCAGAAAATAAAATAA

Protein sequence

>Msa0446110

MMMTMKASASICSNSLIFYSSPSTQNSHTFSPFLVKSMATPKPVRSVSKTVASKKNSTVFPLGEQPRSAVTSTQSVKLLTRMEQLRLLTKAEKAGLLSAAEKAGLSLSTIEKLGLLSKAEELGVLSAATDPSTPGSLFTLSFVLLLLGPLFVYLVPEDNVVEVGLQAVVALVCVVGGSAGFAGSSFVSNLQKIK*