AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0828730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828730 MtrunA17_Chr3g0119841 79.070 172 10 3 3 150 8 177 1.43e-82 244
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0828730 AT1G64680.2 61.379 145 38 2 23 150 18 161 3.95e-56 175
Msa0828730 AT1G64680.1 61.379 145 38 2 23 150 18 161 9.81e-56 176

Find 44 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTTCCATTAACAATTAT+TGG 0.181050 5_4:-1655347 Msa0828730:three_prime_UTR
TATCATCCAATAATTGTTAA+TGG 0.198991 5_4:+1655341 None:intergenic
TTTGCTCTTGGAGCATATTT+TGG 0.218844 5_4:+1658269 None:intergenic
GTTATAGAAGTGGAGATAAA+TGG 0.222746 5_4:-1655876 Msa0828730:CDS
CCATTTGCAGAGCCTGTAAT+AGG 0.265083 5_4:-1658113 Msa0828730:CDS
TTATAGAAGTGGAGATAAAT+GGG 0.344984 5_4:-1655875 Msa0828730:CDS
CAGCTACATCTAATAGAAAC+TGG 0.347128 5_4:+1655268 None:intergenic
TCCTCCAGGTGCGCCTGCTC+AGG 0.352565 5_4:-1657959 Msa0828730:intron
TCTGGTGAACCAGCTCCTTT+AGG 0.371810 5_4:-1658206 Msa0828730:CDS
AACTCTGCAACCCATCTTGT+TGG 0.430396 5_4:+1656749 None:intergenic
CCTATTACAGGCTCTGCAAA+TGG 0.450834 5_4:+1658113 None:intergenic
GCAGTAGCACCATTTGCTCT+TGG 0.451258 5_4:+1658257 None:intergenic
TCCACCTGAGCAGGCGCACC+TGG 0.454996 5_4:+1657955 None:intergenic
TGACAGTGCCTTTCTTCCAC+TGG 0.455282 5_4:-1656715 Msa0828730:CDS
GCCTTTCTTCCACTGGCTAG+TGG 0.458976 5_4:-1656708 Msa0828730:CDS
CTTCTTTCTATGCTTCCTCC+AGG 0.466971 5_4:-1657973 Msa0828730:CDS
CCTTTCTTCCACTGGCTAGT+GGG 0.469718 5_4:-1656707 Msa0828730:CDS
CAACACATCCACTGTTCTCC+AGG 0.477413 5_4:+1655426 None:intergenic
CCCACTAGCCAGTGGAAGAA+AGG 0.481322 5_4:+1656707 None:intergenic
CATTTGCAGAGCCTGTAATA+GGG 0.488770 5_4:-1658112 Msa0828730:CDS
AAATATGCTCCAAGAGCAAA+TGG 0.490621 5_4:-1658266 Msa0828730:CDS
AATTATTTCCACCAACAAGA+TGG 0.491129 5_4:-1656760 Msa0828730:CDS
ATGATAATATCCACCTGAGC+AGG 0.514693 5_4:+1657946 None:intergenic
ATTATTTCCACCAACAAGAT+GGG 0.515753 5_4:-1656759 Msa0828730:CDS
TCTGCAACCCATCTTGTTGG+TGG 0.541101 5_4:+1656752 None:intergenic
CTGGCTAGTGGGTCCTTCTG+AGG 0.542547 5_4:-1656696 Msa0828730:intron
TAAATGGGGTGAAGCAAAAG+AGG 0.543309 5_4:-1655860 Msa0828730:CDS
TGTGGTATAGCTGAACCATC+TGG 0.549247 5_4:-1658224 Msa0828730:CDS
AAAGGAGCTGGTTCACCAGA+TGG 0.553062 5_4:+1658209 None:intergenic
AGTAACAAAATCACCTCAGA+AGG 0.568318 5_4:+1656683 None:intergenic
GCATATATATACATAAAAGC+TGG 0.570250 5_4:+1655224 None:intergenic
ATGGTGCTACTGCTACCATT+CGG 0.571787 5_4:-1658247 Msa0828730:CDS
TTTGGTGGAGTTATTAGCTG+AGG 0.595601 5_4:+1658287 None:intergenic
ACCTGAGCAGGCGCACCTGG+AGG 0.601220 5_4:+1657958 None:intergenic
CTGGAGAACAGTGGATGTGT+TGG 0.601316 5_4:-1655425 Msa0828730:CDS
TATGTACTAGGTTATAGAAG+TGG 0.602466 5_4:-1655886 Msa0828730:intron
AAATGGGGTGAAGCAAAAGA+GGG 0.627912 5_4:-1655859 Msa0828730:CDS
TATAGAAGTGGAGATAAATG+GGG 0.632566 5_4:-1655874 Msa0828730:CDS
GCAACAGCAAGTTGTTCGTG+AGG 0.632780 5_4:-1657998 Msa0828730:CDS
TTCAGCTATACCACACCGAA+TGG 0.634647 5_4:+1658232 None:intergenic
TTCAGGTACCTGGAGAACAG+TGG 0.643237 5_4:-1655434 Msa0828730:intron
CAGAAGGACCCACTAGCCAG+TGG 0.651518 5_4:+1656699 None:intergenic
AATGGGGTGAAGCAAAAGAG+GGG 0.736860 5_4:-1655858 Msa0828730:CDS
GCTACTGCTACCATTCGGTG+TGG 0.736888 5_4:-1658242 Msa0828730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAGAAGAAGAAAAAAA+AGG - chr5_4:1655411-1655430 Msa0828730:exon 15.0%
!! AAAAAGAAGAAGAAAAAAAA+GGG - chr5_4:1655412-1655431 Msa0828730:exon 15.0%
!!! TGATTATTATTATTTTTGAC+TGG + chr5_4:1655717-1655736 None:intergenic 15.0%
!!! AGTAAAAACGTTTTATATAT+TGG - chr5_4:1657073-1657092 Msa0828730:intron 15.0%
!! TTAAAAATGACTAAAAATCA+AGG + chr5_4:1657267-1657286 None:intergenic 15.0%
!!! TTTCTATTTGAAACTTTATA+AGG - chr5_4:1657464-1657483 Msa0828730:intron 15.0%
!!! TATATTTTTTTTTCTTGTTC+AGG - chr5_4:1658044-1658063 Msa0828730:intron 15.0%
!! AATAATCATGTGCTTAATAA+TGG - chr5_4:1655729-1655748 Msa0828730:intron 20.0%
!! AAAGTATATTCTTTGATCAT+TGG - chr5_4:1655759-1655778 Msa0828730:intron 20.0%
!! TATCTATAAGTTATAACACA+AGG + chr5_4:1655936-1655955 None:intergenic 20.0%
!! CTGTTAAAATATTAATTGTG+AGG + chr5_4:1656251-1656270 None:intergenic 20.0%
!! ACAAAATTGAAAGATATGAA+AGG + chr5_4:1656433-1656452 None:intergenic 20.0%
!!! AATTTTGTTGAATATGTAGT+GGG - chr5_4:1656445-1656464 Msa0828730:intron 20.0%
!! TTTCAAACTAATATAGATAC+AGG + chr5_4:1656636-1656655 None:intergenic 20.0%
!! TAAAAATGACTTTATTCCTT+CGG + chr5_4:1656693-1656712 None:intergenic 20.0%
!! TAAACAAATGCTAAATTGAT+AGG + chr5_4:1656874-1656893 None:intergenic 20.0%
!! GTCATTGATATTTAGATTAT+TGG - chr5_4:1657586-1657605 Msa0828730:intron 20.0%
!! TTCATTAGTGAAAAAATCTT+GGG + chr5_4:1658125-1658144 None:intergenic 20.0%
!! ATTCATTAGTGAAAAAATCT+TGG + chr5_4:1658126-1658145 None:intergenic 20.0%
!!! GATTTTTTCACTAATGAATT+TGG - chr5_4:1658127-1658146 Msa0828730:CDS 20.0%
!! TATCATCCAATAATTGTTAA+TGG + chr5_4:1658157-1658176 None:intergenic 20.0%
! GTAAATTTATGCTTCTTTCA+AGG - chr5_4:1655630-1655649 Msa0828730:intron 25.0%
! TATTCAATTATGTACGTGTA+AGG - chr5_4:1655655-1655674 Msa0828730:intron 25.0%
! GAAAACAGCATATAACTTAT+AGG - chr5_4:1655888-1655907 Msa0828730:intron 25.0%
!! CAATTTTGTTGAATATGTAG+TGG - chr5_4:1656444-1656463 Msa0828730:intron 25.0%
!! ATTTTGTTGAATATGTAGTG+GGG - chr5_4:1656446-1656465 Msa0828730:intron 25.0%
! TAATTTCCTAAACTGCAATA+AGG + chr5_4:1656720-1656739 None:intergenic 25.0%
! AGCAATATAAATTACATGGT+TGG + chr5_4:1656850-1656869 None:intergenic 25.0%
! AGGTAGCAATATAAATTACA+TGG + chr5_4:1656854-1656873 None:intergenic 25.0%
!! CGTTTTATATATTGGAAGTT+AGG - chr5_4:1657081-1657100 Msa0828730:intron 25.0%
! CTAAAAATCAAGGAAATCAA+TGG + chr5_4:1657257-1657276 None:intergenic 25.0%
!! ATTTTAAACCAAACTTCAGA+GGG + chr5_4:1657324-1657343 None:intergenic 25.0%
! AAAAAATGGCTGAAATATCA+AGG - chr5_4:1657513-1657532 Msa0828730:intron 25.0%
! TTAGATTATTGGTATGTACT+AGG - chr5_4:1657597-1657616 Msa0828730:intron 25.0%
! TTATAGAAGTGGAGATAAAT+GGG - chr5_4:1657620-1657639 Msa0828730:intron 25.0%
!!! CTATCAGTGACTATTTTTTT+AGG - chr5_4:1657840-1657859 Msa0828730:intron 25.0%
! ATCAACAAAAATTCACAAGA+AGG + chr5_4:1658018-1658037 None:intergenic 25.0%
! GCATATATATACATAAAAGC+TGG + chr5_4:1658274-1658293 None:intergenic 25.0%
!! CAATGACAGTATTTTTGAGA+AGG - chr5_4:1655327-1655346 Msa0828730:three_prime_UTR 30.0%
!! TTTTTAGCATTCCCTATTAC+AGG + chr5_4:1655397-1655416 None:intergenic 30.0%
AGAAGAAGAAAAAAAAGGGT+TGG - chr5_4:1655416-1655435 Msa0828730:CDS 30.0%
!! CTTGCGAACTTGTTATATAT+AGG - chr5_4:1656596-1656615 Msa0828730:intron 30.0%
TAATATAGATACAGGCATGA+GGG + chr5_4:1656628-1656647 None:intergenic 30.0%
ACAATTAATCTTTAGACCGA+AGG - chr5_4:1656674-1656693 Msa0828730:intron 30.0%
TAACTACCTTATTGCAGTTT+AGG - chr5_4:1656711-1656730 Msa0828730:CDS 30.0%
AATTATTTCCACCAACAAGA+TGG - chr5_4:1656735-1656754 Msa0828730:CDS 30.0%
ATTATTTCCACCAACAAGAT+GGG - chr5_4:1656736-1656755 Msa0828730:CDS 30.0%
! GTTTAACTTCATAAGAGCTT+TGG - chr5_4:1656889-1656908 Msa0828730:intron 30.0%
TCAATCCATTTATTTGTCAG+TGG - chr5_4:1656978-1656997 Msa0828730:intron 30.0%
!! TACAAGTATTTTTGCTTTCC+TGG + chr5_4:1657036-1657055 None:intergenic 30.0%
! CATTTTAAACCAAACTTCAG+AGG + chr5_4:1657325-1657344 None:intergenic 30.0%
! GTAACTCAACCTTTTTGAAT+TGG - chr5_4:1657391-1657410 Msa0828730:intron 30.0%
! ATGCCTTTCATTTTACTCAT+GGG - chr5_4:1657415-1657434 Msa0828730:intron 30.0%
TCACGTGTGAAAACAAAAAA+TGG - chr5_4:1657499-1657518 Msa0828730:intron 30.0%
TATGTACTAGGTTATAGAAG+TGG - chr5_4:1657609-1657628 Msa0828730:intron 30.0%
GTTATAGAAGTGGAGATAAA+TGG - chr5_4:1657619-1657638 Msa0828730:intron 30.0%
TATAGAAGTGGAGATAAATG+GGG - chr5_4:1657621-1657640 Msa0828730:intron 30.0%
TCTACCTGCATTTCTTTATA+TGG + chr5_4:1657666-1657685 None:intergenic 30.0%
!! AGATTTCATGTCTCTAAGAT+TGG - chr5_4:1657683-1657702 Msa0828730:intron 30.0%
TCAATGGAGTAATAATCAGA+AGG + chr5_4:1657919-1657938 None:intergenic 30.0%
TCTGATTATTACTCCATTGA+TGG - chr5_4:1657919-1657938 Msa0828730:intron 30.0%
TTAGTGAAAAAATCTTGGGT+AGG + chr5_4:1658121-1658140 None:intergenic 30.0%
GGACTTCCATTAACAATTAT+TGG - chr5_4:1658148-1658167 Msa0828730:CDS 30.0%
! TTTGCTCTTGGAGCATATTT+TGG + chr5_4:1655229-1655248 None:intergenic 35.0%
AAATATGCTCCAAGAGCAAA+TGG - chr5_4:1655229-1655248 Msa0828730:three_prime_UTR 35.0%
! TAACGTGTCTTTTGTCCTAA+AGG + chr5_4:1655307-1655326 None:intergenic 35.0%
! GACTTTGTTTGCACGAAAAA+TGG - chr5_4:1655357-1655376 Msa0828730:three_prime_UTR 35.0%
!! GTTGGTTTATGAGAGTTTTG+TGG - chr5_4:1655434-1655453 Msa0828730:intron 35.0%
! GTCAATTCAGTGTTACTCTT+AGG + chr5_4:1655812-1655831 None:intergenic 35.0%
TGCTAAGCTTACTGTCTATT+TGG + chr5_4:1656024-1656043 None:intergenic 35.0%
CAGTAAGCTTAGCATTTGTT+TGG - chr5_4:1656030-1656049 Msa0828730:intron 35.0%
AGCTTAGCATTTGTTTGGAT+TGG - chr5_4:1656035-1656054 Msa0828730:intron 35.0%
ATTCAGATTCAAGATGCAGA+GGG + chr5_4:1656084-1656103 None:intergenic 35.0%
AATTCAGATTCAAGATGCAG+AGG + chr5_4:1656085-1656104 None:intergenic 35.0%
ATCAAAGTTCCAAACCCTTA+TGG + chr5_4:1656480-1656499 None:intergenic 35.0%
! AAGGGTTTGGAACTTTGATT+TGG - chr5_4:1656481-1656500 Msa0828730:intron 35.0%
! AGGGTTTGGAACTTTGATTT+GGG - chr5_4:1656482-1656501 Msa0828730:intron 35.0%
!! TTTGGAACTTTGATTTGGGA+AGG - chr5_4:1656486-1656505 Msa0828730:intron 35.0%
GGACACTGAGAATATTATGT+AGG + chr5_4:1656540-1656559 None:intergenic 35.0%
CTAATATAGATACAGGCATG+AGG + chr5_4:1656629-1656648 None:intergenic 35.0%
AGTAACAAAATCACCTCAGA+AGG + chr5_4:1656815-1656834 None:intergenic 35.0%
! AACACTTGCAAACTCTTTTC+AGG + chr5_4:1656919-1656938 None:intergenic 35.0%
ATTTACCGCCATTTGAAAAC+CGG + chr5_4:1657010-1657029 None:intergenic 35.0%
!! AAGTATTTTTGCTTTCCTGG+AGG + chr5_4:1657033-1657052 None:intergenic 35.0%
TTGCAGAGCTGCATAATATT+AGG - chr5_4:1657225-1657244 Msa0828730:intron 35.0%
TGCAGAGCTGCATAATATTA+GGG - chr5_4:1657226-1657245 Msa0828730:intron 35.0%
GTGAGAGTTACAAAATGTCT+TGG + chr5_4:1657299-1657318 None:intergenic 35.0%
! AAAGGCATGCCAATTCAAAA+AGG + chr5_4:1657403-1657422 None:intergenic 35.0%
! CATGCCTTTCATTTTACTCA+TGG - chr5_4:1657414-1657433 Msa0828730:intron 35.0%
CATCCCATGAGTAAAATGAA+AGG + chr5_4:1657421-1657440 None:intergenic 35.0%
TGAAAGTAATCAATCGAGTC+TGG - chr5_4:1657800-1657819 Msa0828730:intron 35.0%
ATGTTAGTATCCACTATCCA+TGG - chr5_4:1657880-1657899 Msa0828730:intron 35.0%
!!! TTTTTTCTTGTTCAGGTACC+TGG - chr5_4:1658051-1658070 Msa0828730:intron 35.0%
CAGCTACATCTAATAGAAAC+TGG + chr5_4:1658230-1658249 None:intergenic 35.0%
TTTGGTGGAGTTATTAGCTG+AGG + chr5_4:1655211-1655230 None:intergenic 40.0%
CATTTGCAGAGCCTGTAATA+GGG - chr5_4:1655383-1655402 Msa0828730:three_prime_UTR 40.0%
ATGATAATATCCACCTGAGC+AGG + chr5_4:1655552-1655571 None:intergenic 40.0%
TTAACAGACCTCGCATAAAG+AGG - chr5_4:1656264-1656283 Msa0828730:intron 40.0%
CAACTCCAAACAGCATAGTA+AGG + chr5_4:1656293-1656312 None:intergenic 40.0%
! GATTTTGAGCCATAAGGGTT+TGG - chr5_4:1656468-1656487 Msa0828730:intron 40.0%
! ATTTGGGAAGGTGCATAGTA+GGG - chr5_4:1656498-1656517 Msa0828730:intron 40.0%
TGCAAGTGTTCTGCATTTCA+AGG - chr5_4:1656929-1656948 Msa0828730:intron 40.0%
TCGGTCCACTGACAAATAAA+TGG + chr5_4:1656986-1657005 None:intergenic 40.0%
TTGTCCAAGTGCTTTCACTT+TGG - chr5_4:1657188-1657207 Msa0828730:intron 40.0%
! TTCACTTTGGAGAGGATTGT+AGG - chr5_4:1657201-1657220 Msa0828730:intron 40.0%
TAAATGGGGTGAAGCAAAAG+AGG - chr5_4:1657635-1657654 Msa0828730:intron 40.0%
AAATGGGGTGAAGCAAAAGA+GGG - chr5_4:1657636-1657655 Msa0828730:intron 40.0%
GCGTCCATATAAAGAAATGC+AGG - chr5_4:1657659-1657678 Msa0828730:intron 40.0%
AGTCTGGAAAGTCTTGAACA+GGG - chr5_4:1657816-1657835 Msa0828730:intron 40.0%
AGTTAAGCAGACAACTCGAT+CGG + chr5_4:1657956-1657975 None:intergenic 40.0%
!! GCTCTTGGAGCATATTTTGG+TGG + chr5_4:1655226-1655245 None:intergenic 45.0%
!! ATGGTGCTACTGCTACCATT+CGG - chr5_4:1655248-1655267 Msa0828730:three_prime_UTR 45.0%
TTCAGCTATACCACACCGAA+TGG + chr5_4:1655266-1655285 None:intergenic 45.0%
TGTGGTATAGCTGAACCATC+TGG - chr5_4:1655271-1655290 Msa0828730:three_prime_UTR 45.0%
! GTCTTTTGTCCTAAAGGAGC+TGG + chr5_4:1655301-1655320 None:intergenic 45.0%
CCTATTACAGGCTCTGCAAA+TGG + chr5_4:1655385-1655404 None:intergenic 45.0%
CCATTTGCAGAGCCTGTAAT+AGG - chr5_4:1655382-1655401 Msa0828730:three_prime_UTR 45.0%
CGAAGAGAGTAATGTTGCGT+CGG - chr5_4:1655463-1655482 Msa0828730:intron 45.0%
CTTCTTTCTATGCTTCCTCC+AGG - chr5_4:1655522-1655541 Msa0828730:intron 45.0%
ACCCTGTGTGGAAATTGTAG+CGG + chr5_4:1656159-1656178 None:intergenic 45.0%
CAAATGTCTTACACCCTGTG+TGG + chr5_4:1656171-1656190 None:intergenic 45.0%
CTTTATGCCTCATCCAGAGA+GGG - chr5_4:1656191-1656210 Msa0828730:intron 45.0%
CTTAACTATGCATCCCTCTC+TGG + chr5_4:1656207-1656226 None:intergenic 45.0%
TAAGGACTCCTCTTTATGCG+AGG + chr5_4:1656275-1656294 None:intergenic 45.0%
GGAGTCCTTACTATGCTGTT+TGG - chr5_4:1656285-1656304 Msa0828730:intron 45.0%
! TGCTGTTTGGAGTTGTCGTT+AGG - chr5_4:1656298-1656317 Msa0828730:intron 45.0%
AAGGACCAGTCCAACTTAAG+TGG + chr5_4:1656327-1656346 None:intergenic 45.0%
GTTGTCAGATGCAACTTGCA+AGG + chr5_4:1656346-1656365 None:intergenic 45.0%
! AGTGGGGATTTTGAGCCATA+AGG - chr5_4:1656462-1656481 Msa0828730:intron 45.0%
! GTGGGGATTTTGAGCCATAA+GGG - chr5_4:1656463-1656482 Msa0828730:intron 45.0%
! GATTTGGGAAGGTGCATAGT+AGG - chr5_4:1656497-1656516 Msa0828730:intron 45.0%
ATATTCTCAGTGTCCCAACC+CGG - chr5_4:1656545-1656564 Msa0828730:intron 45.0%
! ACAAGTTCGCAAGTTTGCTC+AGG + chr5_4:1656589-1656608 None:intergenic 45.0%
AACTCTGCAACCCATCTTGT+TGG + chr5_4:1656749-1656768 None:intergenic 45.0%
TATTTGTCAGTGGACCGAAC+CGG - chr5_4:1656988-1657007 Msa0828730:intron 45.0%
!! CTCTCCAAAGTGAAAGCACT+TGG + chr5_4:1657195-1657214 None:intergenic 45.0%
! CAAGTGCTTTCACTTTGGAG+AGG - chr5_4:1657193-1657212 Msa0828730:intron 45.0%
!! TCTCACAACCCTCTGAAGTT+TGG - chr5_4:1657313-1657332 Msa0828730:intron 45.0%
AATGGGGTGAAGCAAAAGAG+GGG - chr5_4:1657637-1657656 Msa0828730:intron 45.0%
GAGTCTGGAAAGTCTTGAAC+AGG - chr5_4:1657815-1657834 Msa0828730:intron 45.0%
ATCCACTATCCATGGTTCGA+AGG - chr5_4:1657888-1657907 Msa0828730:intron 45.0%
AACCTTCGAACCATGGATAG+TGG + chr5_4:1657893-1657912 None:intergenic 45.0%
ACTATCCATGGTTCGAAGGT+TGG - chr5_4:1657892-1657911 Msa0828730:intron 45.0%
!! TATAAATAGAAAAATTTATA+GGG + chr5_4:1657556-1657575 None:intergenic 5.0%
!! ATATAAATAGAAAAATTTAT+AGG + chr5_4:1657557-1657576 None:intergenic 5.0%
GCAGTAGCACCATTTGCTCT+TGG + chr5_4:1655241-1655260 None:intergenic 50.0%
! AAAGGAGCTGGTTCACCAGA+TGG + chr5_4:1655289-1655308 None:intergenic 50.0%
TCTGGTGAACCAGCTCCTTT+AGG - chr5_4:1655289-1655308 Msa0828730:three_prime_UTR 50.0%
GCAACAGCAAGTTGTTCGTG+AGG - chr5_4:1655497-1655516 Msa0828730:intron 50.0%
TCTTGCTTCTTGCAGACGTG+TGG - chr5_4:1656121-1656140 Msa0828730:intron 50.0%
ACCCGCTACAATTTCCACAC+AGG - chr5_4:1656154-1656173 Msa0828730:intron 50.0%
CCCTGTGTGGAAATTGTAGC+GGG + chr5_4:1656158-1656177 None:intergenic 50.0%
CCCGCTACAATTTCCACACA+GGG - chr5_4:1656155-1656174 Msa0828730:intron 50.0%
GCTTTATGCCTCATCCAGAG+AGG - chr5_4:1656190-1656209 Msa0828730:intron 50.0%
TATGCATCCCTCTCTGGATG+AGG + chr5_4:1656201-1656220 None:intergenic 50.0%
CGTTAGGCCTCCACTTAAGT+TGG - chr5_4:1656314-1656333 Msa0828730:intron 50.0%
GACCAGTCCAACTTAAGTGG+AGG + chr5_4:1656324-1656343 None:intergenic 50.0%
TCCCAACCCGGCTATTCATT+CGG - chr5_4:1656557-1656576 Msa0828730:intron 50.0%
AAGTCGCCGAATGAATAGCC+GGG + chr5_4:1656566-1656585 None:intergenic 50.0%
GAAGTCGCCGAATGAATAGC+CGG + chr5_4:1656567-1656586 None:intergenic 50.0%
TCTGCAACCCATCTTGTTGG+TGG + chr5_4:1656746-1656765 None:intergenic 50.0%
TGACAGTGCCTTTCTTCCAC+TGG - chr5_4:1656780-1656799 Msa0828730:intron 50.0%
! CCTTTCTTCCACTGGCTAGT+GGG - chr5_4:1656788-1656807 Msa0828730:intron 50.0%
!! GGACCGAACCGGTTTTCAAA+TGG - chr5_4:1656999-1657018 Msa0828730:intron 50.0%
CCGCCATTTGAAAACCGGTT+CGG + chr5_4:1657005-1657024 None:intergenic 50.0%
!! CCGAACCGGTTTTCAAATGG+CGG - chr5_4:1657002-1657021 Msa0828730:intron 50.0%
CAAATGGCGGTAAATCCTCC+AGG - chr5_4:1657015-1657034 Msa0828730:intron 50.0%
GCAAGTTGCAAGTTGCAAGC+TGG + chr5_4:1657365-1657384 None:intergenic 50.0%
AAGGTCCAACCTTCGAACCA+TGG + chr5_4:1657900-1657919 None:intergenic 50.0%
! CAACTCGATCGGTGAGTTGA+GGG + chr5_4:1657945-1657964 None:intergenic 50.0%
ACAACTCGATCGGTGAGTTG+AGG + chr5_4:1657946-1657965 None:intergenic 50.0%
TTCAGGTACCTGGAGAACAG+TGG - chr5_4:1658061-1658080 Msa0828730:intron 50.0%
CAACACATCCACTGTTCTCC+AGG + chr5_4:1658072-1658091 None:intergenic 50.0%
CTGGAGAACAGTGGATGTGT+TGG - chr5_4:1658070-1658089 Msa0828730:CDS 50.0%
! GCTACTGCTACCATTCGGTG+TGG - chr5_4:1655253-1655272 Msa0828730:three_prime_UTR 55.0%
GCAGAGGGACGCGAGAATAT+GGG + chr5_4:1656069-1656088 None:intergenic 55.0%
TGCAGAGGGACGCGAGAATA+TGG + chr5_4:1656070-1656089 None:intergenic 55.0%
TGCTTCTTGCAGACGTGTGG+TGG - chr5_4:1656124-1656143 Msa0828730:intron 55.0%
GCTTCTTGCAGACGTGTGGT+GGG - chr5_4:1656125-1656144 Msa0828730:intron 55.0%
!! GGCCTCCACTTAAGTTGGAC+TGG - chr5_4:1656319-1656338 Msa0828730:intron 55.0%
! GGGAAGGTGCATAGTAGGGA+TGG - chr5_4:1656502-1656521 Msa0828730:intron 55.0%
GCCGAATGAATAGCCGGGTT+GGG + chr5_4:1656561-1656580 None:intergenic 55.0%
! GCCTTTCTTCCACTGGCTAG+TGG - chr5_4:1656787-1656806 Msa0828730:intron 55.0%
CCCACTAGCCAGTGGAAGAA+AGG + chr5_4:1656791-1656810 None:intergenic 55.0%
! GGTGAGTTGAGGGCCATCAA+TGG + chr5_4:1657935-1657954 None:intergenic 55.0%
! TCTTGCAGACGTGTGGTGGG+TGG - chr5_4:1656128-1656147 Msa0828730:intron 60.0%
!! CTTGCAGACGTGTGGTGGGT+GGG - chr5_4:1656129-1656148 Msa0828730:intron 60.0%
CGCCGAATGAATAGCCGGGT+TGG + chr5_4:1656562-1656581 None:intergenic 60.0%
CAGAAGGACCCACTAGCCAG+TGG + chr5_4:1656799-1656818 None:intergenic 60.0%
! CTGGCTAGTGGGTCCTTCTG+AGG - chr5_4:1656799-1656818 Msa0828730:intron 60.0%
TCCTCCAGGTGCGCCTGCTC+AGG - chr5_4:1655536-1655555 Msa0828730:intron 70.0%
ACCTGAGCAGGCGCACCTGG+AGG + chr5_4:1655540-1655559 None:intergenic 70.0%
TCCAGGTGCGCCTGCTCAGG+TGG - chr5_4:1655539-1655558 Msa0828730:intron 70.0%
TCCACCTGAGCAGGCGCACC+TGG + chr5_4:1655543-1655562 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 1655181 1658336 1655181 ID=Msa0828730;Name=Msa0828730
chr5_4 mRNA 1655181 1658336 1655181 ID=Msa0828730-mRNA-1;Parent=Msa0828730;Name=Msa0828730-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.4|0.33|1|0.4|0.5|6|232|161
chr5_4 exon 1655181 1655451 1655181 ID=Msa0828730-mRNA-1:exon:423;Parent=Msa0828730-mRNA-1
chr5_4 exon 1655857 1655898 1655857 ID=Msa0828730-mRNA-1:exon:422;Parent=Msa0828730-mRNA-1
chr5_4 exon 1656697 1656789 1656697 ID=Msa0828730-mRNA-1:exon:421;Parent=Msa0828730-mRNA-1
chr5_4 exon 1657960 1658019 1657960 ID=Msa0828730-mRNA-1:exon:420;Parent=Msa0828730-mRNA-1
chr5_4 exon 1658070 1658315 1658070 ID=Msa0828730-mRNA-1:exon:419;Parent=Msa0828730-mRNA-1
chr5_4 exon 1658331 1658336 1658331 ID=Msa0828730-mRNA-1:exon:418;Parent=Msa0828730-mRNA-1
chr5_4 CDS 1658331 1658336 1658331 ID=Msa0828730-mRNA-1:cds;Parent=Msa0828730-mRNA-1
chr5_4 CDS 1658070 1658315 1658070 ID=Msa0828730-mRNA-1:cds;Parent=Msa0828730-mRNA-1
chr5_4 CDS 1657960 1658019 1657960 ID=Msa0828730-mRNA-1:cds;Parent=Msa0828730-mRNA-1
chr5_4 CDS 1656697 1656789 1656697 ID=Msa0828730-mRNA-1:cds;Parent=Msa0828730-mRNA-1
chr5_4 CDS 1655857 1655898 1655857 ID=Msa0828730-mRNA-1:cds;Parent=Msa0828730-mRNA-1
chr5_4 CDS 1655413 1655451 1655413 ID=Msa0828730-mRNA-1:cds;Parent=Msa0828730-mRNA-1
chr5_4 three_prime_UTR 1655181 1655412 1655181 ID=Msa0828730-mRNA-1:three_prime_utr;Parent=Msa0828730-mRNA-1
Gene Sequence

>Msa0828730

ATGGTGCTTGTTCCTCAGCTAATAACTCCACCAAAATATGCTCCAAGAGCAAATGGTGCTACTGCTACCATTCGGTGTGGTATAGCTGAACCATCTGGTGAACCAGCTCCTTTAGGACAAAAGACACGTTACAATGACAGTATTTTTGAGAAGGTTTTCATGACTTTGTTTGCACGAAAAATGGAACCATTTGCAGAGCCTGTAATAGGGAATGCTAAAAAGAAGAAGAAAAAAAAGGGTTGGTTTATGAGACAACAGCAAGTTGTTCGTGAGGTTCTTCTTTCTATGCTTCCTCCAGGTGCGCCTGCTCAGTTTAGGAAATTATTTCCACCAACAAGATGGGTTGCAGAGTTTAATGCTGCATTGACAGTGCCTTTCTTCCACTGGCTAGTGGGTCCTTCTGAGGTTATAGAAGTGGAGATAAATGGGGTGAAGCAAAAGAGGGGCGTACCTGGAGAACAGTGGATGTGTTGGACAGTGTGTTAA

Protein sequence

>Msa0828730

MVLVPQLITPPKYAPRANGATATIRCGIAEPSGEPAPLGQKTRYNDSIFEKVFMTLFARKMEPFAEPVIGNAKKKKKKKGWFMRQQQVVREVLLSMLPPGAPAQFRKLFPPTRWVAEFNAALTVPFFHWLVGPSEVIEVEINGVKQKRGVPGEQWMCWTVC*