AlfalfaGEDB | Msa0127510

M. sativa cultivar zhongmu-4 / Msa0127510

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042578 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:1901564
PFAM: PF04536.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127510	XP_003591062.1	97.578	289	7	0	1	289	1	289	0.0	572

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127510	sp\|Q9ZVL6\|U603_ARATH	71.134	291	76	3	1	289	1	285	1.41e-136	390

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127510	G7I7H7	97.578	289	7	0	1	289	1	289	0.0	572

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001510	Msa0127510	0.868005	9.000109e-66	-8.615850e-47
Msa0002690	Msa0127510	0.827400	1.597865e-54	-8.615850e-47
Msa0002700	Msa0127510	0.816149	6.418071e-52	-8.615850e-47
Msa0003340	Msa0127510	0.818493	1.904994e-52	-8.615850e-47
Msa0004180	Msa0127510	0.859500	3.961795e-63	-8.615850e-47
Msa0005190	Msa0127510	0.813519	2.456194e-51	-8.615850e-47
Msa0007570	Msa0127510	0.818250	2.162489e-52	-8.615850e-47
Msa0009210	Msa0127510	0.808379	3.188726e-50	-8.615850e-47
Msa0011910	Msa0127510	0.821733	3.450447e-53	-8.615850e-47
Msa0015220	Msa0127510	0.830902	2.260361e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127510	MtrunA17_Chr1g0191511	97.578	289	7	0	1	289	1	289	0.0	572

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0127510	AT1G54780.1	71.134	291	76	3	1	289	1	285	1.43e-137	390

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Find 87 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGAGCAGTTACTGG+TGG	0.670414	1_3:-56897374	Msa0127510:CDS
AAGGTGAAGATTTGAGGTTG+AGG	0.515163	1_3:+56898437	None:intergenic
AATAATCCAACAAACATATT+TGG	0.145319	1_3:+56896105	None:intergenic
ACCACATAGGCCTCTTTAGG+TGG	0.587301	1_3:+56898184	None:intergenic
ACCGAGGGACCACCAGGATC+TGG	0.448423	1_3:+56896430	None:intergenic
ACCGTTTCAGAGAACCTTCC+AGG	0.350686	1_3:-56897308	Msa0127510:intron
ACCTGGAAGGTTCTCTGAAA+CGG	0.506810	1_3:+56897307	None:intergenic
ACGTTTGTCGTCTTTAACCG+AGG	0.492907	1_3:+56896414	None:intergenic
ACTCAATTATAACATGAGCT+TGG	0.526873	1_3:+56896180	None:intergenic
AGAACAATGTTGTGCAACAG+AGG	0.624229	1_3:-56898548	Msa0127510:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTAATGAGAGAATTTGATT+TGG	+	chr1_3:56896102-56896121	None:intergenic	30.0%
CTTATTTGAGCTTATTTACC+TGG	-	chr1_3:56896512-56896531	Msa0127510:intron	30.0%
ATTAAGCTGAAAACTGCTTA+TGG	+	chr1_3:56896566-56896585	None:intergenic	30.0%
ATACAAGGTTATACCAAAAG+AGG	-	chr1_3:56896684-56896703	Msa0127510:intron	30.0%
TCGAAACATAGCCTAAATAA+AGG	-	chr1_3:56896723-56896742	Msa0127510:intron	30.0%
ATGCACTGAATATATGGTAA+AGG	-	chr1_3:56897470-56897489	Msa0127510:CDS	30.0%
ACTGAATATATGGTAAAGGA+CGG	-	chr1_3:56897474-56897493	Msa0127510:CDS	30.0%
TGAAAACAAATACAAGGTCA+AGG	-	chr1_3:56897526-56897545	Msa0127510:intron	30.0%
AATTTCAGTGTATGTTGTCA+AGG	-	chr1_3:56897794-56897813	Msa0127510:intron	30.0%
TTGTTTAAACCGAAGTATGT+AGG	+	chr1_3:56897828-56897847	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	56895932	56898594	56895932	ID=Msa0127510;Name=Msa0127510
chr1_3	mRNA	56895932	56898594	56895932	ID=Msa0127510-mRNA-1;Parent=Msa0127510;Name=Msa0127510-mRNA-1;_AED=0.17;_eAED=0.17;_QI=97\|1\|1\|1\|1\|1\|3\|350\|289
chr1_3	exon	56895932	56896529	56895932	ID=Msa0127510-mRNA-1:exon:18077;Parent=Msa0127510-mRNA-1
chr1_3	exon	56897309	56897501	56897309	ID=Msa0127510-mRNA-1:exon:18076;Parent=Msa0127510-mRNA-1
chr1_3	exon	56898069	56898594	56898069	ID=Msa0127510-mRNA-1:exon:18075;Parent=Msa0127510-mRNA-1
chr1_3	five_prime_UTR	56898498	56898594	56898498	ID=Msa0127510-mRNA-1:five_prime_utr;Parent=Msa0127510-mRNA-1
chr1_3	CDS	56898069	56898497	56898069	ID=Msa0127510-mRNA-1:cds;Parent=Msa0127510-mRNA-1
chr1_3	CDS	56897309	56897501	56897309	ID=Msa0127510-mRNA-1:cds;Parent=Msa0127510-mRNA-1
chr1_3	CDS	56896282	56896529	56896282	ID=Msa0127510-mRNA-1:cds;Parent=Msa0127510-mRNA-1
chr1_3	three_prime_UTR	56895932	56896281	56895932	ID=Msa0127510-mRNA-1:three_prime_utr;Parent=Msa0127510-mRNA-1

Gene Sequence

>Msa0127510

ATGACAACCCTTTTTCCTCCCAACTCTCTCTCTCCACTCCTCAACCTCAAATCTTCACCTTCCCTCCAACCCAAATCAAATTCTCTCATTACCTACAAACCCATTGTTTCTAATCTCAAAAAGACTCAAACTTTATCTCTAAAACCACCAACCTTTCCTTCTTGCACAACCTTACTCACTCATGCTCAACAGGGTCTTGCAGCTTTGGCCATCACTTTAGCACTCAACTTCAGCCCAGTTTTGCTTAGTGGTGATGCATTGGCTTCTGAATTTGATGTGATTAATGAGCGTCCACCTAAAGAGGCCTATGTGGTTGATGATGCTGGAGTTCTTAGTAGAGTGACCAAGTCTGATTTGAAACGGTTGTTATCTGATTTGGAATCAAGGAAGAATTTTCATATCAATTTTATTACACTTAGAAAACTCACGAGTAAAGCTGATGCTTTTGAGTTTGCGGACCAAATTTTGGAGCGTTGGTATCCTTCTGTGGAAGAGGGCAATGACAAGGGTGTTGTGGTTCTTGTAACAAGTCAGAAAGAAGGAGCAGTTACTGGTGGACCTGCTTTTGTTCAAGCCGTAGGAGAAAATATCCTCGATGCTACCGTTTCAGAGAACCTTCCAGTATTGGCTACGGATGAGAAGTACAATGAAGCAATTTATAGCACCGCTAAACGACTAGTTGCTGCCATTGACGGACTTCCAGATCCTGGTGGTCCCTCGGTTAAAGACGACAAACGTGAGTCTAACTTCAAAACAAAGGAAGAGACAGAAGAAAAGCGTGGACAATTCTCTCTTGTAGTTGGAGGTTTGTTGGTTATTGCATTTGTTGTTCCTATGGTACAATACTATGCTTATGTAGCCAAAAAATAA

Protein sequence

>Msa0127510

MTTLFPPNSLSPLLNLKSSPSLQPKSNSLITYKPIVSNLKKTQTLSLKPPTFPSCTTLLTHAQQGLAALAITLALNFSPVLLSGDALASEFDVINERPPKEAYVVDDAGVLSRVTKSDLKRLLSDLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGVVVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPVLATDEKYNEAIYSTAKRLVAAIDGLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK*