AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127510 MtrunA17_Chr1g0191511 97.578 289 7 0 1 289 1 289 0.0 572
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127510 AT1G54780.1 71.134 291 76 3 1 289 1 285 1.43e-137 390

Find 87 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATCCAACAAACATATT+TGG 0.145319 1_3:+56896105 None:intergenic
GAATTTAAAGAGTGATAATT+TGG 0.218758 1_3:+56896226 None:intergenic
AGAGAGAGTTGGGAGGAAAA+AGG 0.232772 1_3:+56898467 None:intergenic
GAAACGGTTGTTATCTGATT+TGG 0.264813 1_3:-56898119 Msa0127510:CDS
TGAGTTTGCGGACCAAATTT+TGG 0.287868 1_3:-56897462 Msa0127510:CDS
CTCATGTTCTGTCTTTGATT+TGG 0.290236 1_3:+56898569 None:intergenic
GCATCACCACTAAGCAAAAC+TGG 0.294891 1_3:+56898241 None:intergenic
GATACCAACGCTCCAAAATT+TGG 0.302536 1_3:+56897450 None:intergenic
CTTACTCACTCATGCTCAAC+AGG 0.332202 1_3:-56898305 Msa0127510:CDS
TATCAATTGTCAAAACATAA+AGG 0.340178 1_3:-56896044 Msa0127510:three_prime_UTR
TCAACAGGGTCTTGCAGCTT+TGG 0.344111 1_3:-56898290 Msa0127510:CDS
TCTTGTAGTTGGAGGTTTGT+TGG 0.348630 1_3:-56896338 Msa0127510:CDS
ACCGTTTCAGAGAACCTTCC+AGG 0.350686 1_3:-56897308 Msa0127510:intron
ATTAGAAACAATGGGTTTGT+AGG 0.353276 1_3:+56898384 None:intergenic
GTAATGAGAGAATTTGATTT+GGG 0.364556 1_3:+56898406 None:intergenic
ATAATCCAACAAACATATTT+GGG 0.369748 1_3:+56896106 None:intergenic
TAATTCCCAAATATGTTTGT+TGG 0.374420 1_3:-56896111 Msa0127510:three_prime_UTR
TCAACCACATAGGCCTCTTT+AGG 0.375166 1_3:+56898181 None:intergenic
AGGAGTGGAGAGAGAGAGTT+GGG 0.377846 1_3:+56898457 None:intergenic
GGTAATGAGAGAATTTGATT+TGG 0.381578 1_3:+56898405 None:intergenic
CAGAAAGAAGGAGCAGTTAC+TGG 0.391425 1_3:-56897377 Msa0127510:CDS
TGAGAGAATTTGATTTGGGT+TGG 0.408583 1_3:+56898410 None:intergenic
CAATTCTCTCTTGTAGTTGG+AGG 0.420228 1_3:-56896346 Msa0127510:CDS
TATTGCATTTGTTGTTCCTA+TGG 0.427254 1_3:-56896314 Msa0127510:CDS
GGAGGGAAGGTGAAGATTTG+AGG 0.428522 1_3:+56898431 None:intergenic
CGACTAGTTGCTGCCATTGA+CGG 0.431818 1_3:-56896457 Msa0127510:CDS
ACCGAGGGACCACCAGGATC+TGG 0.448423 1_3:+56896430 None:intergenic
GGACAATTCTCTCTTGTAGT+TGG 0.450595 1_3:-56896349 Msa0127510:CDS
GAGGAGTGGAGAGAGAGAGT+TGG 0.457937 1_3:+56898456 None:intergenic
GAGAATTTGATTTGGGTTGG+AGG 0.459403 1_3:+56898413 None:intergenic
TTTGATTTGGGTTGGAGGGA+AGG 0.463106 1_3:+56898418 None:intergenic
TGAGGAAGATGAGGGAGGGT+TGG 0.476347 1_3:+56898497 None:intergenic
GATGAGGGAGGGTTGGATTG+AGG 0.480814 1_3:+56898504 None:intergenic
ACGTTTGTCGTCTTTAACCG+AGG 0.492907 1_3:+56896414 None:intergenic
GCCTATGTGGTTGATGATGC+TGG 0.497501 1_3:-56898172 Msa0127510:CDS
TAATGAGCGTCCACCTAAAG+AGG 0.498637 1_3:-56898194 Msa0127510:CDS
TCCAGATCCTGGTGGTCCCT+CGG 0.499224 1_3:-56896431 Msa0127510:CDS
CAACCGTTTCAAATCAGACT+TGG 0.499905 1_3:+56898132 None:intergenic
TTGGTATCCTTCTGTGGAAG+AGG 0.505336 1_3:-56897435 Msa0127510:CDS
ACCTGGAAGGTTCTCTGAAA+CGG 0.506810 1_3:+56897307 None:intergenic
TTTGCTTAGTGGTGATGCAT+TGG 0.507686 1_3:-56898236 Msa0127510:CDS
GTGCAAGAAGGAAAGGTTGG+TGG 0.510583 1_3:+56898331 None:intergenic
TTTGCATGCAGTATTGGCTA+CGG 0.514698 1_3:-56896518 Msa0127510:intron
AAGGTGAAGATTTGAGGTTG+AGG 0.515163 1_3:+56898437 None:intergenic
AGAATTTGATTTGGGTTGGA+GGG 0.518008 1_3:+56898414 None:intergenic
TGTTATCTGATTTGGAATCA+AGG 0.519003 1_3:-56898111 Msa0127510:CDS
GGGTTGTCATGAGGAAGATG+AGG 0.520868 1_3:+56898488 None:intergenic
ACTCAATTATAACATGAGCT+TGG 0.526873 1_3:+56896180 None:intergenic
TCTTTAACCGAGGGACCACC+AGG 0.532906 1_3:+56896424 None:intergenic
CTGTTGAGCATGAGTGAGTA+AGG 0.534711 1_3:+56898306 None:intergenic
TGACCAAGTCTGATTTGAAA+CGG 0.535029 1_3:-56898135 Msa0127510:CDS
ATTGACGGACTTCCAGATCC+TGG 0.535082 1_3:-56896442 Msa0127510:CDS
GTGAGTAAGGTTGTGCAAGA+AGG 0.536651 1_3:+56898319 None:intergenic
AGGATCTGGAAGTCCGTCAA+TGG 0.539431 1_3:+56896444 None:intergenic
TAAGCATAGTATTGTACCAT+AGG 0.544493 1_3:+56896298 None:intergenic
GGTTGTCATGAGGAAGATGA+GGG 0.547700 1_3:+56898489 None:intergenic
GAAGATTTGAGGTTGAGGAG+TGG 0.548141 1_3:+56898442 None:intergenic
GTTGTGCAAGAAGGAAAGGT+TGG 0.551412 1_3:+56898328 None:intergenic
TCATTGCCCTCTTCCACAGA+AGG 0.552223 1_3:+56897428 None:intergenic
TAAGGTTGTGCAAGAAGGAA+AGG 0.555527 1_3:+56898324 None:intergenic
CCTACGGCTTGAACAAAAGC+AGG 0.557352 1_3:+56897350 None:intergenic
TGTCATGAGGAAGATGAGGG+AGG 0.561679 1_3:+56898492 None:intergenic
GGCAGCAACTAGTCGTTTAG+CGG 0.568536 1_3:+56896465 None:intergenic
CTTGTAACAAGTCAGAAAGA+AGG 0.568574 1_3:-56897389 Msa0127510:CDS
GTCATGAGGAAGATGAGGGA+GGG 0.568806 1_3:+56898493 None:intergenic
GGGCAATGACAAGGGTGTTG+TGG 0.572099 1_3:-56897414 Msa0127510:CDS
TATTACACTTAGAAAACTCA+CGG 0.578085 1_3:-56898068 Msa0127510:intron
ACCACATAGGCCTCTTTAGG+TGG 0.587301 1_3:+56898184 None:intergenic
TGTGGAAGAGGGCAATGACA+AGG 0.591400 1_3:-56897423 Msa0127510:CDS
CATCACCACTAAGCAAAACT+GGG 0.595053 1_3:+56898242 None:intergenic
CGTTTGTCGTCTTTAACCGA+GGG 0.605535 1_3:+56896415 None:intergenic
GGAGCGTTGGTATCCTTCTG+TGG 0.606556 1_3:-56897441 Msa0127510:CDS
GAAGAGACAGAAGAAAAGCG+TGG 0.608619 1_3:-56896370 Msa0127510:CDS
TGGTATCCTTCTGTGGAAGA+GGG 0.611132 1_3:-56897434 Msa0127510:CDS
TCCACCTAAAGAGGCCTATG+TGG 0.614674 1_3:-56898185 Msa0127510:CDS
GGGAGGGTTGGATTGAGGAA+AGG 0.615602 1_3:+56898509 None:intergenic
AGTGGAGAGAGAGAGTTGGG+AGG 0.617964 1_3:+56898460 None:intergenic
AGAACAATGTTGTGCAACAG+AGG 0.624229 1_3:-56898548 Msa0127510:five_prime_UTR
TGAGTCTAACTTCAAAACAA+AGG 0.628354 1_3:-56896392 Msa0127510:CDS
GAAGTTGAGTGCTAAAGTGA+TGG 0.651168 1_3:+56898267 None:intergenic
GCCATCAGGAAGTACCTGGA+AGG 0.654042 1_3:+56897294 None:intergenic
GTGGAAGAGGGCAATGACAA+GGG 0.659164 1_3:-56897422 Msa0127510:CDS
AAAGAAGGAGCAGTTACTGG+TGG 0.670414 1_3:-56897374 Msa0127510:CDS
TCCAGCATCATCAACCACAT+AGG 0.674153 1_3:+56898171 None:intergenic
GACGGACTTCCAGATCCTGG+TGG 0.696278 1_3:-56896439 Msa0127510:CDS
TTACTCACTCATGCTCAACA+GGG 0.696497 1_3:-56898304 Msa0127510:CDS
TCTCTGAAACGGTAGCATCG+AGG 0.740488 1_3:+56897318 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTTTTCCTTTATTT+AGG + chr1_3:56896737-56896756 None:intergenic 15.0%
!! CTTAACCAAAAAAAAAAAAA+CGG + chr1_3:56897600-56897619 None:intergenic 15.0%
!!! ATATCCATTATCTTATTTTT+TGG + chr1_3:56898237-56898256 None:intergenic 15.0%
!!! TTTTTGAGATTAGAAACAAT+GGG + chr1_3:56896131-56896150 None:intergenic 20.0%
!! AAATTCAATTCAATGACATA+TGG + chr1_3:56896474-56896493 None:intergenic 20.0%
!! TATGTCATTGAATTGAATTT+AGG - chr1_3:56896474-56896493 Msa0127510:CDS 20.0%
!! ATGTCATTGAATTGAATTTA+GGG - chr1_3:56896475-56896494 Msa0127510:CDS 20.0%
!!! ATTTTCATATAAGCTATAAG+CGG + chr1_3:56896606-56896625 None:intergenic 20.0%
!! ATAAGCAATTATATGATACA+AGG - chr1_3:56896669-56896688 Msa0127510:intron 20.0%
!! TGATCAATAATCTGATAAAA+TGG - chr1_3:56896957-56896976 Msa0127510:intron 20.0%
!!! TTTTTCTTCACTAACAAATA+TGG - chr1_3:56897368-56897387 Msa0127510:CDS 20.0%
!!! TTTTCTTGAAAACAAATACA+AGG - chr1_3:56897520-56897539 Msa0127510:intron 20.0%
!! AATGACCATAAAGATAATAA+TGG - chr1_3:56897692-56897711 Msa0127510:intron 20.0%
!! CATATCCATTATTATCTTTA+TGG + chr1_3:56897700-56897719 None:intergenic 20.0%
!!! TTTTTTGTGATAGCTAAAAA+GGG + chr1_3:56897754-56897773 None:intergenic 20.0%
!! GAATTTAAAGAGTGATAATT+TGG + chr1_3:56898281-56898300 None:intergenic 20.0%
!! ATAATCCAACAAACATATTT+GGG + chr1_3:56898401-56898420 None:intergenic 20.0%
!! AATAATCCAACAAACATATT+TGG + chr1_3:56898402-56898421 None:intergenic 20.0%
!! TATCAATTGTCAAAACATAA+AGG - chr1_3:56898460-56898479 Msa0127510:CDS 20.0%
!! GTAATGAGAGAATTTGATTT+GGG + chr1_3:56896101-56896120 None:intergenic 25.0%
!!! CTTTTTGAGATTAGAAACAA+TGG + chr1_3:56896132-56896151 None:intergenic 25.0%
! TATTACACTTAGAAAACTCA+CGG - chr1_3:56896436-56896455 Msa0127510:CDS 25.0%
!! AGAACTAAATTAACCTCTTT+TGG + chr1_3:56896700-56896719 None:intergenic 25.0%
! TCTATTTAGCATGTTAGTAT+TGG + chr1_3:56896802-56896821 None:intergenic 25.0%
!! ATGTGTTGTTGTATTGTAAT+AGG - chr1_3:56896890-56896909 Msa0127510:intron 25.0%
! GTTGTATTGTAATAGGAAAA+CGG - chr1_3:56896897-56896916 Msa0127510:intron 25.0%
!!! ATTGTTTTTTTGTAGCATGT+TGG - chr1_3:56897252-56897271 Msa0127510:intron 25.0%
!!! TTGTTTTTTTGTAGCATGTT+GGG - chr1_3:56897253-56897272 Msa0127510:intron 25.0%
! ATGATGATTATGTCTTTCAA+AGG - chr1_3:56897319-56897338 Msa0127510:CDS 25.0%
! CATCATCATTGATATGAATA+TGG - chr1_3:56897435-56897454 Msa0127510:CDS 25.0%
!!! TGACACCGTTTTTTTTTTTT+TGG - chr1_3:56897592-56897611 Msa0127510:intron 25.0%
!!! TTTTTTTTGGTTAAGAGTTG+AGG - chr1_3:56897605-56897624 Msa0127510:intron 25.0%
!!! GTTTTTTGTGATAGCTAAAA+AGG + chr1_3:56897755-56897774 None:intergenic 25.0%
! ACACTGAAATTAAATGGATA+GGG + chr1_3:56897785-56897804 None:intergenic 25.0%
! TACACTGAAATTAAATGGAT+AGG + chr1_3:56897786-56897805 None:intergenic 25.0%
! CAACATACACTGAAATTAAA+TGG + chr1_3:56897791-56897810 None:intergenic 25.0%
! GTAGCCAAAAAATAAGATAA+TGG - chr1_3:56898230-56898249 Msa0127510:CDS 25.0%
!!! CAAATAAGATCAGAGTTTTT+TGG - chr1_3:56898360-56898379 Msa0127510:CDS 25.0%
! TAATTCCCAAATATGTTTGT+TGG - chr1_3:56898393-56898412 Msa0127510:CDS 25.0%
GGTAATGAGAGAATTTGATT+TGG + chr1_3:56896102-56896121 None:intergenic 30.0%
! ATTAGAAACAATGGGTTTGT+AGG + chr1_3:56896123-56896142 None:intergenic 30.0%
!! TGTTATCTGATTTGGAATCA+AGG - chr1_3:56896393-56896412 Msa0127510:CDS 30.0%
! CATTGAATTGAATTTAGGGT+CGG - chr1_3:56896479-56896498 Msa0127510:CDS 30.0%
CTTATTTGAGCTTATTTACC+TGG - chr1_3:56896512-56896531 Msa0127510:intron 30.0%
ATTAAGCTGAAAACTGCTTA+TGG + chr1_3:56896566-56896585 None:intergenic 30.0%
ATACAAGGTTATACCAAAAG+AGG - chr1_3:56896684-56896703 Msa0127510:intron 30.0%
TCGAAACATAGCCTAAATAA+AGG - chr1_3:56896723-56896742 Msa0127510:intron 30.0%
! TGTTGAGTATTTGAGTTATG+TGG - chr1_3:56896993-56897012 Msa0127510:intron 30.0%
!!! TGTTTTTTTGTAGCATGTTG+GGG - chr1_3:56897254-56897273 Msa0127510:intron 30.0%
ATGCACTGAATATATGGTAA+AGG - chr1_3:56897470-56897489 Msa0127510:CDS 30.0%
ACTGAATATATGGTAAAGGA+CGG - chr1_3:56897474-56897493 Msa0127510:CDS 30.0%
TGAAAACAAATACAAGGTCA+AGG - chr1_3:56897526-56897545 Msa0127510:intron 30.0%
AATTTCAGTGTATGTTGTCA+AGG - chr1_3:56897794-56897813 Msa0127510:intron 30.0%
TTGTTTAAACCGAAGTATGT+AGG + chr1_3:56897828-56897847 None:intergenic 30.0%
TACATACTTCGGTTTAAACA+AGG - chr1_3:56897827-56897846 Msa0127510:intron 30.0%
!! TAGCAGTTGTGATCATTTTT+AGG - chr1_3:56897938-56897957 Msa0127510:intron 30.0%
!! AGCAGTTGTGATCATTTTTA+GGG - chr1_3:56897939-56897958 Msa0127510:intron 30.0%
TGAGTCTAACTTCAAAACAA+AGG - chr1_3:56898112-56898131 Msa0127510:CDS 30.0%
!! TATTGCATTTGTTGTTCCTA+TGG - chr1_3:56898190-56898209 Msa0127510:CDS 30.0%
TAAGCATAGTATTGTACCAT+AGG + chr1_3:56898209-56898228 None:intergenic 30.0%
ACTCAATTATAACATGAGCT+TGG + chr1_3:56898327-56898346 None:intergenic 30.0%
CTCATGTTCTGTCTTTGATT+TGG + chr1_3:56895938-56895957 None:intergenic 35.0%
!! AGAATTTGATTTGGGTTGGA+GGG + chr1_3:56896093-56896112 None:intergenic 35.0%
!! TGAGAGAATTTGATTTGGGT+TGG + chr1_3:56896097-56896116 None:intergenic 35.0%
! TGACCAAGTCTGATTTGAAA+CGG - chr1_3:56896369-56896388 Msa0127510:CDS 35.0%
GAAACGGTTGTTATCTGATT+TGG - chr1_3:56896385-56896404 Msa0127510:CDS 35.0%
TTCAGTGTTAGTTATGCAGT+AGG - chr1_3:56896756-56896775 Msa0127510:intron 35.0%
! TGAGTATTTGAGTTATGTGG+TGG - chr1_3:56896996-56897015 Msa0127510:intron 35.0%
CTTGTAACAAGTCAGAAAGA+AGG - chr1_3:56897115-56897134 Msa0127510:intron 35.0%
! ATCGAGGATATTTTCTCCTA+CGG + chr1_3:56897173-56897192 None:intergenic 35.0%
!!! GTTTTTTTGTAGCATGTTGG+GGG - chr1_3:56897255-56897274 Msa0127510:intron 35.0%
AAGGATTTACAAGACTGACT+TGG - chr1_3:56897338-56897357 Msa0127510:CDS 35.0%
CTAACAAATATGGCAAGTGT+TGG - chr1_3:56897378-56897397 Msa0127510:CDS 35.0%
! CTTCATAGTTTGTGAACAGA+TGG + chr1_3:56897414-56897433 None:intergenic 35.0%
CATCTGTTCACAAACTATGA+AGG - chr1_3:56897412-56897431 Msa0127510:CDS 35.0%
CATGTCATGCACTGAATATA+TGG - chr1_3:56897464-56897483 Msa0127510:CDS 35.0%
GTAAAGGACGGATGATAATT+TGG - chr1_3:56897486-56897505 Msa0127510:intron 35.0%
! TAAACAAGGCAACACGTTTT+CGG - chr1_3:56897841-56897860 Msa0127510:intron 35.0%
!! GCAGTTGTGATCATTTTTAG+GGG - chr1_3:56897940-56897959 Msa0127510:intron 35.0%
TGCATGCAAAAACCAGATAA+CGG + chr1_3:56897976-56897995 None:intergenic 35.0%
AGAACAATGTTGTGCAACAG+AGG - chr1_3:56895956-56895975 Msa0127510:three_prime_UTR 40.0%
! AAGGTGAAGATTTGAGGTTG+AGG + chr1_3:56896070-56896089 None:intergenic 40.0%
!! GAGAATTTGATTTGGGTTGG+AGG + chr1_3:56896094-56896113 None:intergenic 40.0%
TAAGGTTGTGCAAGAAGGAA+AGG + chr1_3:56896183-56896202 None:intergenic 40.0%
TTACTCACTCATGCTCAACA+GGG - chr1_3:56896200-56896219 Msa0127510:three_prime_UTR 40.0%
GAAGTTGAGTGCTAAAGTGA+TGG + chr1_3:56896240-56896259 None:intergenic 40.0%
CATCACCACTAAGCAAAACT+GGG + chr1_3:56896265-56896284 None:intergenic 40.0%
! TTTGCTTAGTGGTGATGCAT+TGG - chr1_3:56896268-56896287 Msa0127510:exon 40.0%
CAACCGTTTCAAATCAGACT+TGG + chr1_3:56896375-56896394 None:intergenic 40.0%
ATGCTCACATGTGTTTATCC+AGG + chr1_3:56896533-56896552 None:intergenic 40.0%
!!! AGCTGATGCTTTTGAGTTTG+CGG - chr1_3:56897030-56897049 Msa0127510:intron 40.0%
! TGAGTTTGCGGACCAAATTT+TGG - chr1_3:56897042-56897061 Msa0127510:intron 40.0%
GATACCAACGCTCCAAAATT+TGG + chr1_3:56897057-56897076 None:intergenic 40.0%
AGTTGAGGTTGTGCTTTATC+AGG - chr1_3:56897620-56897639 Msa0127510:intron 40.0%
GTTGAGGTTGTGCTTTATCA+GGG - chr1_3:56897621-56897640 Msa0127510:intron 40.0%
TTGAGGTTGTGCTTTATCAG+GGG - chr1_3:56897622-56897641 Msa0127510:intron 40.0%
!! CTGGTTTTTGCATGCAGTAT+TGG - chr1_3:56897980-56897999 Msa0127510:intron 40.0%
!! TTTGCATGCAGTATTGGCTA+CGG - chr1_3:56897986-56898005 Msa0127510:intron 40.0%
GGACAATTCTCTCTTGTAGT+TGG - chr1_3:56898155-56898174 Msa0127510:CDS 40.0%
CAATTCTCTCTTGTAGTTGG+AGG - chr1_3:56898158-56898177 Msa0127510:CDS 40.0%
TCTTGTAGTTGGAGGTTTGT+TGG - chr1_3:56898166-56898185 Msa0127510:CDS 40.0%
TGCATCGAGTGCATAAAAAC+AGG + chr1_3:56898433-56898452 None:intergenic 40.0%
GGTTGTCATGAGGAAGATGA+GGG + chr1_3:56896018-56896037 None:intergenic 45.0%
GAGGAAAAAGGGTTGTCATG+AGG + chr1_3:56896028-56896047 None:intergenic 45.0%
GAGAGAGTTGGGAGGAAAAA+GGG + chr1_3:56896039-56896058 None:intergenic 45.0%
AGAGAGAGTTGGGAGGAAAA+AGG + chr1_3:56896040-56896059 None:intergenic 45.0%
! GAAGATTTGAGGTTGAGGAG+TGG + chr1_3:56896065-56896084 None:intergenic 45.0%
!! TTTGATTTGGGTTGGAGGGA+AGG + chr1_3:56896089-56896108 None:intergenic 45.0%
GTTGTGCAAGAAGGAAAGGT+TGG + chr1_3:56896179-56896198 None:intergenic 45.0%
GTGAGTAAGGTTGTGCAAGA+AGG + chr1_3:56896188-56896207 None:intergenic 45.0%
CTGTTGAGCATGAGTGAGTA+AGG + chr1_3:56896201-56896220 None:intergenic 45.0%
CTTACTCACTCATGCTCAAC+AGG - chr1_3:56896199-56896218 Msa0127510:three_prime_UTR 45.0%
! TTCAGCCCAGTTTTGCTTAG+TGG - chr1_3:56896257-56896276 Msa0127510:three_prime_UTR 45.0%
GCATCACCACTAAGCAAAAC+TGG + chr1_3:56896266-56896285 None:intergenic 45.0%
TAATGAGCGTCCACCTAAAG+AGG - chr1_3:56896310-56896329 Msa0127510:CDS 45.0%
TCAACCACATAGGCCTCTTT+AGG + chr1_3:56896326-56896345 None:intergenic 45.0%
TCCAGCATCATCAACCACAT+AGG + chr1_3:56896336-56896355 None:intergenic 45.0%
TTGGTATCCTTCTGTGGAAG+AGG - chr1_3:56897069-56897088 Msa0127510:intron 45.0%
TGGTATCCTTCTGTGGAAGA+GGG - chr1_3:56897070-56897089 Msa0127510:intron 45.0%
CAGAAAGAAGGAGCAGTTAC+TGG - chr1_3:56897127-56897146 Msa0127510:intron 45.0%
AAAGAAGGAGCAGTTACTGG+TGG - chr1_3:56897130-56897149 Msa0127510:intron 45.0%
! ACCTGGAAGGTTCTCTGAAA+CGG + chr1_3:56897200-56897219 None:intergenic 45.0%
!! TTCCTGATGGCTAGTGGATT+TGG - chr1_3:56897222-56897241 Msa0127510:intron 45.0%
ATCCAAATCCACTAGCCATC+AGG + chr1_3:56897227-56897246 None:intergenic 45.0%
TGAATCGCTTTGTCAGCATG+TGG - chr1_3:56897554-56897573 Msa0127510:intron 45.0%
GAATCGCTTTGTCAGCATGT+GGG - chr1_3:56897555-56897574 Msa0127510:intron 45.0%
!! AGGGGCACTTTCAACATGAA+AGG - chr1_3:56897640-56897659 Msa0127510:intron 45.0%
GCTTATGCGCCTACATACTT+CGG - chr1_3:56897816-56897835 Msa0127510:intron 45.0%
TTTCGGCGTGGTGATAAACT+AGG - chr1_3:56897858-56897877 Msa0127510:intron 45.0%
TTCGGCGTGGTGATAAACTA+GGG - chr1_3:56897859-56897878 Msa0127510:intron 45.0%
GCAACATCAGAAGACAGACA+TGG + chr1_3:56897908-56897927 None:intergenic 45.0%
GGCACAATACTACCGTTATC+TGG - chr1_3:56897961-56897980 Msa0127510:intron 45.0%
CGTTTGTCGTCTTTAACCGA+GGG + chr1_3:56898092-56898111 None:intergenic 45.0%
ACGTTTGTCGTCTTTAACCG+AGG + chr1_3:56898093-56898112 None:intergenic 45.0%
GAAGAGACAGAAGAAAAGCG+TGG - chr1_3:56898134-56898153 Msa0127510:CDS 45.0%
GTCATGAGGAAGATGAGGGA+GGG + chr1_3:56896014-56896033 None:intergenic 50.0%
TGTCATGAGGAAGATGAGGG+AGG + chr1_3:56896015-56896034 None:intergenic 50.0%
GGGTTGTCATGAGGAAGATG+AGG + chr1_3:56896019-56896038 None:intergenic 50.0%
AGGAGTGGAGAGAGAGAGTT+GGG + chr1_3:56896050-56896069 None:intergenic 50.0%
GGAGGGAAGGTGAAGATTTG+AGG + chr1_3:56896076-56896095 None:intergenic 50.0%
GTGCAAGAAGGAAAGGTTGG+TGG + chr1_3:56896176-56896195 None:intergenic 50.0%
TCAACAGGGTCTTGCAGCTT+TGG - chr1_3:56896214-56896233 Msa0127510:three_prime_UTR 50.0%
TCCACCTAAAGAGGCCTATG+TGG - chr1_3:56896319-56896338 Msa0127510:CDS 50.0%
ACCACATAGGCCTCTTTAGG+TGG + chr1_3:56896323-56896342 None:intergenic 50.0%
!! GCCTATGTGGTTGATGATGC+TGG - chr1_3:56896332-56896351 Msa0127510:CDS 50.0%
!!! CGGACCAAATTTTGGAGCGT+TGG - chr1_3:56897050-56897069 Msa0127510:intron 50.0%
TCATTGCCCTCTTCCACAGA+AGG + chr1_3:56897079-56897098 None:intergenic 50.0%
TGTGGAAGAGGGCAATGACA+AGG - chr1_3:56897081-56897100 Msa0127510:intron 50.0%
GTGGAAGAGGGCAATGACAA+GGG - chr1_3:56897082-56897101 Msa0127510:intron 50.0%
CCTACGGCTTGAACAAAAGC+AGG + chr1_3:56897157-56897176 None:intergenic 50.0%
!! CCTGCTTTTGTTCAAGCCGT+AGG - chr1_3:56897154-56897173 Msa0127510:intron 50.0%
!! TCTCTGAAACGGTAGCATCG+AGG + chr1_3:56897189-56897208 None:intergenic 50.0%
ACCGTTTCAGAGAACCTTCC+AGG - chr1_3:56897196-56897215 Msa0127510:intron 50.0%
ACCTTCCAGGTACTTCCTGA+TGG - chr1_3:56897209-56897228 Msa0127510:intron 50.0%
!! ACTAGCCATCAGGAAGTACC+TGG + chr1_3:56897217-56897236 None:intergenic 50.0%
AGGTACTTCCTGATGGCTAG+TGG - chr1_3:56897216-56897235 Msa0127510:intron 50.0%
GGCAGCAACTAGTCGTTTAG+CGG + chr1_3:56898042-56898061 None:intergenic 50.0%
! CGACTAGTTGCTGCCATTGA+CGG - chr1_3:56898047-56898066 Msa0127510:intron 50.0%
AGGATCTGGAAGTCCGTCAA+TGG + chr1_3:56898063-56898082 None:intergenic 50.0%
!! ATTGACGGACTTCCAGATCC+TGG - chr1_3:56898062-56898081 Msa0127510:intron 50.0%
GGGAGGGTTGGATTGAGGAA+AGG + chr1_3:56895998-56896017 None:intergenic 55.0%
GATGAGGGAGGGTTGGATTG+AGG + chr1_3:56896003-56896022 None:intergenic 55.0%
TGAGGAAGATGAGGGAGGGT+TGG + chr1_3:56896010-56896029 None:intergenic 55.0%
AGTGGAGAGAGAGAGTTGGG+AGG + chr1_3:56896047-56896066 None:intergenic 55.0%
GAGGAGTGGAGAGAGAGAGT+TGG + chr1_3:56896051-56896070 None:intergenic 55.0%
!! GGAGCGTTGGTATCCTTCTG+TGG - chr1_3:56897063-56897082 Msa0127510:intron 55.0%
!! GGGCAATGACAAGGGTGTTG+TGG - chr1_3:56897090-56897109 Msa0127510:intron 55.0%
!! GCCATCAGGAAGTACCTGGA+AGG + chr1_3:56897213-56897232 None:intergenic 55.0%
! AAGGCAACACGTTTTCGGCG+TGG - chr1_3:56897846-56897865 Msa0127510:intron 55.0%
TCTTTAACCGAGGGACCACC+AGG + chr1_3:56898083-56898102 None:intergenic 55.0%
! GACGGACTTCCAGATCCTGG+TGG - chr1_3:56898065-56898084 Msa0127510:intron 60.0%
TCCAGATCCTGGTGGTCCCT+CGG - chr1_3:56898073-56898092 Msa0127510:CDS 60.0%
ACCGAGGGACCACCAGGATC+TGG + chr1_3:56898077-56898096 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56895932 56898594 56895932 ID=Msa0127510;Name=Msa0127510
chr1_3 mRNA 56895932 56898594 56895932 ID=Msa0127510-mRNA-1;Parent=Msa0127510;Name=Msa0127510-mRNA-1;_AED=0.17;_eAED=0.17;_QI=97|1|1|1|1|1|3|350|289
chr1_3 exon 56895932 56896529 56895932 ID=Msa0127510-mRNA-1:exon:18077;Parent=Msa0127510-mRNA-1
chr1_3 exon 56897309 56897501 56897309 ID=Msa0127510-mRNA-1:exon:18076;Parent=Msa0127510-mRNA-1
chr1_3 exon 56898069 56898594 56898069 ID=Msa0127510-mRNA-1:exon:18075;Parent=Msa0127510-mRNA-1
chr1_3 five_prime_UTR 56898498 56898594 56898498 ID=Msa0127510-mRNA-1:five_prime_utr;Parent=Msa0127510-mRNA-1
chr1_3 CDS 56898069 56898497 56898069 ID=Msa0127510-mRNA-1:cds;Parent=Msa0127510-mRNA-1
chr1_3 CDS 56897309 56897501 56897309 ID=Msa0127510-mRNA-1:cds;Parent=Msa0127510-mRNA-1
chr1_3 CDS 56896282 56896529 56896282 ID=Msa0127510-mRNA-1:cds;Parent=Msa0127510-mRNA-1
chr1_3 three_prime_UTR 56895932 56896281 56895932 ID=Msa0127510-mRNA-1:three_prime_utr;Parent=Msa0127510-mRNA-1
Gene Sequence

>Msa0127510

ATGACAACCCTTTTTCCTCCCAACTCTCTCTCTCCACTCCTCAACCTCAAATCTTCACCTTCCCTCCAACCCAAATCAAATTCTCTCATTACCTACAAACCCATTGTTTCTAATCTCAAAAAGACTCAAACTTTATCTCTAAAACCACCAACCTTTCCTTCTTGCACAACCTTACTCACTCATGCTCAACAGGGTCTTGCAGCTTTGGCCATCACTTTAGCACTCAACTTCAGCCCAGTTTTGCTTAGTGGTGATGCATTGGCTTCTGAATTTGATGTGATTAATGAGCGTCCACCTAAAGAGGCCTATGTGGTTGATGATGCTGGAGTTCTTAGTAGAGTGACCAAGTCTGATTTGAAACGGTTGTTATCTGATTTGGAATCAAGGAAGAATTTTCATATCAATTTTATTACACTTAGAAAACTCACGAGTAAAGCTGATGCTTTTGAGTTTGCGGACCAAATTTTGGAGCGTTGGTATCCTTCTGTGGAAGAGGGCAATGACAAGGGTGTTGTGGTTCTTGTAACAAGTCAGAAAGAAGGAGCAGTTACTGGTGGACCTGCTTTTGTTCAAGCCGTAGGAGAAAATATCCTCGATGCTACCGTTTCAGAGAACCTTCCAGTATTGGCTACGGATGAGAAGTACAATGAAGCAATTTATAGCACCGCTAAACGACTAGTTGCTGCCATTGACGGACTTCCAGATCCTGGTGGTCCCTCGGTTAAAGACGACAAACGTGAGTCTAACTTCAAAACAAAGGAAGAGACAGAAGAAAAGCGTGGACAATTCTCTCTTGTAGTTGGAGGTTTGTTGGTTATTGCATTTGTTGTTCCTATGGTACAATACTATGCTTATGTAGCCAAAAAATAA

Protein sequence

>Msa0127510

MTTLFPPNSLSPLLNLKSSPSLQPKSNSLITYKPIVSNLKKTQTLSLKPPTFPSCTTLLTHAQQGLAALAITLALNFSPVLLSGDALASEFDVINERPPKEAYVVDDAGVLSRVTKSDLKRLLSDLESRKNFHINFITLRKLTSKADAFEFADQILERWYPSVEEGNDKGVVVLVTSQKEGAVTGGPAFVQAVGENILDATVSENLPVLATDEKYNEAIYSTAKRLVAAIDGLPDPGGPSVKDDKRESNFKTKEETEEKRGQFSLVVGGLLVIAFVVPMVQYYAYVAKK*