AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0552920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552920 MtrunA17_Chr4g0038461 95.817 526 7 2 1 511 1 526 0.0 913
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0552920 AT2G21140.1 41.830 306 134 14 1 284 1 284 1.37e-42 154
Msa0552920 AT2G21140.1 50.920 163 49 10 301 456 180 318 4.66e-11 64.7
Msa0552920 AT4G38770.1 55.634 142 54 3 33 173 31 164 5.36e-39 147

Find 178 sgRNAs with CRISPR-Local

Find 496 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCACCACCCCAAGTATTT+TGG 0.149326 4_1:-49658584 Msa0552920:CDS
ACAACTGGTGGTTTGTAAAT+TGG 0.182003 4_1:+49658758 None:intergenic
TCCAACATTGTTTATATATT+AGG 0.214507 4_1:-49660473 Msa0552920:five_prime_UTR
GAGAAGCTACTAAGCTTCTT+TGG 0.262352 4_1:+49660410 None:intergenic
ACTACTGGAGGCTTATATAT+TGG 0.279939 4_1:+49658803 None:intergenic
AGTATTGATTGATCTGCTTT+AGG 0.293210 4_1:-49660377 Msa0552920:five_prime_UTR
GAAGAGAGGCCAAAAGAATT+TGG 0.300313 4_1:+49659498 None:intergenic
ACCGGTGGTGGTTGTGGCTT+TGG 0.311135 4_1:+49658986 None:intergenic
CTCTTCCATCACCCCAAGTT+TGG 0.325374 4_1:-49658482 Msa0552920:CDS
TTCTTCCATCACCCAAAGTT+TGG 0.326013 4_1:-49658533 Msa0552920:CDS
CATGTACCTCCAAATTCTTT+TGG 0.326491 4_1:-49659507 Msa0552920:CDS
ATTGGAACAACCGGTGGCTT+TGG 0.327984 4_1:+49658776 None:intergenic
GGGTGGTGGAAGAAGCTCTT+TGG 0.328567 4_1:+49658596 None:intergenic
AATAATGTGAGTATACTAAT+TGG 0.334331 4_1:+49660445 None:intergenic
GGTGGACATGGTTTCTTGAT+TGG 0.340442 4_1:+49658857 None:intergenic
CTTAAATTTCATTGTCGGTT+TGG 0.341172 4_1:-49660509 Msa0552920:five_prime_UTR
ACTGGAACGGGTGGTAAAAC+TGG 0.341382 4_1:+49658923 None:intergenic
GTGGCCACTTTCCAAACTTT+GGG 0.360377 4_1:+49658522 None:intergenic
GGGTGTTTATGGAAAATCTT+TGG 0.361066 4_1:+49659400 None:intergenic
AGAACTGGGTGCTCAATCTT+AGG 0.363075 4_1:+49658836 None:intergenic
ATCACCCTAAGTATGGAAAA+TGG 0.363281 4_1:-49658631 Msa0552920:CDS
TGGAAAATCTTTGGTGGAAA+TGG 0.364399 4_1:+49659409 None:intergenic
GGTGGTTGTGGCTTTGGAAC+AGG 0.371317 4_1:+49658992 None:intergenic
ATTGGAACAGGTGGTAGAAC+TGG 0.374309 4_1:+49658821 None:intergenic
GGAAAGGGAGGTTTGTAGAT+AGG 0.379613 4_1:+49659328 None:intergenic
AGGGCAAGGTTTCTTGTAGA+TGG 0.383488 4_1:+49659297 None:intergenic
GGTGGCCACTTTCCAAACTT+TGG 0.388021 4_1:+49658521 None:intergenic
CATGGTTTCTTGACCGGAAC+CGG 0.393305 4_1:+49658968 None:intergenic
ATTTCATTGTCGGTTTGGTT+TGG 0.393582 4_1:-49660504 Msa0552920:five_prime_UTR
CATGGTTTCTTGACTGGAAC+AGG 0.398406 4_1:+49659073 None:intergenic
AAGAGCACAAAAGTGCTCTT+TGG 0.399281 4_1:+49660327 None:intergenic
CATGGTTTCTTGATTGGAAC+TGG 0.400117 4_1:+49658863 None:intergenic
TACCAGCAGCAGCAGTACTT+AGG 0.413145 4_1:+49659551 None:intergenic
ACTGGAGCAGGTGGTGGAAC+TGG 0.413223 4_1:+49659028 None:intergenic
AAAACTGGATGTTCAACCTT+TGG 0.417040 4_1:+49658938 None:intergenic
CATAGTACAGTTGAGGTAGT+TGG 0.417079 4_1:-49660257 Msa0552920:CDS
ACAGGAGGAGGTTTGTATAC+TGG 0.418915 4_1:+49659010 None:intergenic
GCCACAACCACCACCGGTTC+CGG 0.423338 4_1:-49658981 Msa0552920:CDS
TAGATAGGAATATGAGGAAA+TGG 0.423815 4_1:+49659343 None:intergenic
ACCGGAGGAGGTTTGTATAC+TGG 0.424626 4_1:+49658905 None:intergenic
ACTGGTGGTGGAAGTGCCTT+TGG 0.426363 4_1:+49658881 None:intergenic
ACAGGTGTAGGTGGAGGAAG+AGG 0.429970 4_1:+49659217 None:intergenic
GGGAGAGGTTTATGGTAAAC+AGG 0.430983 4_1:+49659166 None:intergenic
GGAACTGGATGTTCAACCTT+TGG 0.432776 4_1:+49659043 None:intergenic
AATGGAGGTTTCTTGTAGAT+AGG 0.434086 4_1:+49659361 None:intergenic
TGTGGCTTTGGAACAGGAGG+AGG 0.434128 4_1:+49658998 None:intergenic
GGAAGAGGTTTCTCATAAAC+AGG 0.436457 4_1:+49659232 None:intergenic
CTCTTTGGAGGCAGAGGAAG+AGG 0.439420 4_1:+49658704 None:intergenic
AGGTTCTTAAATTTCATTGT+CGG 0.439658 4_1:-49660514 Msa0552920:five_prime_UTR
TTCTTGATTGGAACTGGTGG+TGG 0.439691 4_1:+49658869 None:intergenic
ACAGTTGAGGTAGTTGGGCT+TGG 0.440510 4_1:-49660251 Msa0552920:CDS
GGACATGGTGGTTTCTTGAA+TGG 0.444236 4_1:+49658728 None:intergenic
ACCGGAACCGGTGGTGGTTG+TGG 0.444913 4_1:+49658980 None:intergenic
GGTGGACATGGTTTCTTGAC+TGG 0.446271 4_1:+49659067 None:intergenic
TCATATATAGGCACAGGTGG+AGG 0.447385 4_1:+49659277 None:intergenic
TAGGTGGAGGGAGAGGTTTA+TGG 0.447625 4_1:+49659158 None:intergenic
GGTTTCTTGTAGATAGGAAC+AGG 0.451221 4_1:+49659367 None:intergenic
TGATGGAAGAAGCTCTTATG+AGG 0.451803 4_1:+49658545 None:intergenic
AAGACTAGCCAGGCTTTCTC+AGG 0.452806 4_1:-49660197 Msa0552920:intron
ATAGTACAGTTGAGGTAGTT+GGG 0.452883 4_1:-49660256 Msa0552920:CDS
AAATCAGGATGAGGAAGCTT+AGG 0.452894 4_1:+49659460 None:intergenic
GGAAGAGGTTTATGATATAC+AGG 0.458760 4_1:+49659100 None:intergenic
TTGAATGGAGGAAGGACAAC+TGG 0.459001 4_1:+49658743 None:intergenic
TTCTTGTAGATGGGAATATG+AGG 0.460426 4_1:+49659307 None:intergenic
ACAGGCACAGGCGGAGGAAG+AGG 0.461209 4_1:+49659184 None:intergenic
GGTGGAAGTGCCTTTGGAAC+CGG 0.461513 4_1:+49658887 None:intergenic
GGTGGCTTTGGAATTACTAC+TGG 0.468914 4_1:+49658788 None:intergenic
TTCTTGACTGGAACAGGAGG+AGG 0.469362 4_1:+49659079 None:intergenic
ACCTAATTATGAGGACTTAG+TGG 0.469386 4_1:+49658449 None:intergenic
ATCACCCCAAGTTTGGATCA+TGG 0.469401 4_1:-49658475 Msa0552920:CDS
GGTGGACATGGTTTCTTGAC+CGG 0.470640 4_1:+49658962 None:intergenic
ATGATCCAAACTTGGGGTGA+TGG 0.472534 4_1:+49658477 None:intergenic
ACAGGTGTAGGAGGAGGGAT+AGG 0.473148 4_1:+49659250 None:intergenic
ACTGGAACAGGAGGAGGAAG+AGG 0.480945 4_1:+49659085 None:intergenic
AGTGCCTTTGGAACCGGAGG+AGG 0.482140 4_1:+49658893 None:intergenic
GGAGGCTTATATATTGGAAC+AGG 0.482206 4_1:+49658809 None:intergenic
TCAACCTTTGGCGGTGGACA+TGG 0.483187 4_1:+49658950 None:intergenic
ACCAGCAGCAGCAGTACTTA+GGG 0.485236 4_1:+49659552 None:intergenic
TTCCAAAATACTTGGGGTGG+TGG 0.485411 4_1:+49658582 None:intergenic
TGGAGGCCATGATCCAAACT+TGG 0.487208 4_1:+49658469 None:intergenic
TAGATGGGAATATGAGGAAA+GGG 0.489468 4_1:+49659313 None:intergenic
GCACCTTGTCCTGCTCATGA+TGG 0.491575 4_1:-49659625 Msa0552920:CDS
AAAAGAGCCACCTAATTATG+AGG 0.498709 4_1:+49658440 None:intergenic
TCAACCTTTGGTGGTGGACA+TGG 0.500021 4_1:+49659055 None:intergenic
GGAGGTTTGTATACTGGAAC+GGG 0.500410 4_1:+49658911 None:intergenic
GCCTAATATATAAACAATGT+TGG 0.502603 4_1:+49660472 None:intergenic
CCTCAAGAAATTGTAAAAGA+AGG 0.509177 4_1:-49659694 Msa0552920:CDS
TGCTCAATCTTAGGTGGACA+TGG 0.509524 4_1:+49658845 None:intergenic
AAGAAGCTCTTATGAGGGAT+TGG 0.509685 4_1:+49658551 None:intergenic
GGTTTGTAGATAGGAATATG+AGG 0.511489 4_1:+49659337 None:intergenic
ATTGACTGCAAAGAAGCAAA+TGG 0.512954 4_1:-49659778 Msa0552920:CDS
ACAAAGTACCTGAGAAAGCC+TGG 0.513034 4_1:+49660189 None:intergenic
TTCTTGACCGGAACCGGTGG+TGG 0.513178 4_1:+49658974 None:intergenic
GGAAGAGGTTTCTCATACAC+AGG 0.514773 4_1:+49659133 None:intergenic
ACTGGATGTTCAACCTTTGG+CGG 0.518741 4_1:+49658941 None:intergenic
GAACAATATTAAGACTAGCC+AGG 0.519758 4_1:-49660207 Msa0552920:CDS
CAAACTTGGGGTGATGGAAG+AGG 0.519949 4_1:+49658483 None:intergenic
TGGTGGAAGAAGCTCTTTGG+AGG 0.520821 4_1:+49658599 None:intergenic
TCCAGTATACAAACCTCCTC+CGG 0.523113 4_1:-49658906 Msa0552920:CDS
AAGAAGCTCTTTGGAGGCAA+TGG 0.524273 4_1:+49658605 None:intergenic
GGAGGTTTGTATACTGGAGC+AGG 0.524277 4_1:+49659016 None:intergenic
GGGCAAGGTTTCTTGTAGAT+GGG 0.525451 4_1:+49659298 None:intergenic
ACTTTCCAAACTTTGGGTGA+TGG 0.525688 4_1:+49658528 None:intergenic
GGAAGAGGTTTCTCATAGAC+AGG 0.529446 4_1:+49659199 None:intergenic
TCATAAACAGGTGTAGGAGG+AGG 0.529472 4_1:+49659244 None:intergenic
TGTTTATGGAAAATCTTTGG+TGG 0.529934 4_1:+49659403 None:intergenic
TTGTATACTGGAGCAGGTGG+TGG 0.530491 4_1:+49659022 None:intergenic
ATCACCCAAAGTTTGGAAAG+TGG 0.535768 4_1:-49658526 Msa0552920:CDS
AAGAACCTCACATGGTTCAA+AGG 0.536553 4_1:+49660529 None:intergenic
GGCTTTGGAATTACTACTGG+AGG 0.536776 4_1:+49658791 None:intergenic
GGATGTTCAACCTTTGGCGG+TGG 0.540742 4_1:+49658944 None:intergenic
GGTTTGTAAATTGGAACAAC+CGG 0.540910 4_1:+49658767 None:intergenic
AAAGCAGATCAATCAATACT+TGG 0.540981 4_1:+49660380 None:intergenic
ACTGGATGTTCAACCTTTGG+TGG 0.542345 4_1:+49659046 None:intergenic
TTCTCATAAACAGGTGTAGG+AGG 0.543447 4_1:+49659241 None:intergenic
ACAGGCGTAGGTGGAGGAAG+AGG 0.545913 4_1:+49659118 None:intergenic
GGCTTATATATTGGAACAGG+TGG 0.547652 4_1:+49658812 None:intergenic
GGTTTCTCATAAACAGGTGT+AGG 0.548606 4_1:+49659238 None:intergenic
ATAGGCACAGGTGGAGGGCA+AGG 0.548824 4_1:+49659283 None:intergenic
GGAGGCCATGATCCAAACTT+GGG 0.549567 4_1:+49658470 None:intergenic
AAAATCTTTGGTGGAAATGG+TGG 0.550630 4_1:+49659412 None:intergenic
ACAGGTGTAGGTGGAGGGAG+AGG 0.551926 4_1:+49659151 None:intergenic
TGATATACAGGCGTAGGTGG+AGG 0.552048 4_1:+49659112 None:intergenic
GTAGATGGGAATATGAGGAA+AGG 0.552981 4_1:+49659312 None:intergenic
TCATACACAGGTGTAGGTGG+AGG 0.556428 4_1:+49659145 None:intergenic
GAAACCATGTCCACCGCCAA+AGG 0.557231 4_1:-49658954 Msa0552920:CDS
TGGTAAACAGGCACAGGCGG+AGG 0.557803 4_1:+49659178 None:intergenic
AAGCTCTTATGAGGGATTGG+TGG 0.558802 4_1:+49658554 None:intergenic
ATGGGAATATGAGGAAAGGG+AGG 0.558873 4_1:+49659316 None:intergenic
TCCAAAGCCACAACCACCAC+CGG 0.560446 4_1:-49658987 Msa0552920:CDS
GGTTTATGGTAAACAGGCAC+AGG 0.560487 4_1:+49659172 None:intergenic
CATATATAGGCACAGGTGGA+GGG 0.562809 4_1:+49659278 None:intergenic
ACCCTAAGTACTGCTGCTGC+TGG 0.563864 4_1:-49659553 Msa0552920:CDS
GGTTTATGATATACAGGCGT+AGG 0.567260 4_1:+49659106 None:intergenic
GGCAGAGGAAGAGGTGGACA+TGG 0.572916 4_1:+49658713 None:intergenic
TTCTCATAGACAGGTGTAGG+TGG 0.573276 4_1:+49659208 None:intergenic
AAGCTCTTTGGAGGCAATGG+AGG 0.573741 4_1:+49658608 None:intergenic
TTCTCATACACAGGTGTAGG+TGG 0.574160 4_1:+49659142 None:intergenic
GGTTTCTCATAGACAGGTGT+AGG 0.575587 4_1:+49659205 None:intergenic
AGGAGGTTTGTATACTGGAA+CGG 0.577587 4_1:+49658910 None:intergenic
TCATAGACAGGTGTAGGTGG+AGG 0.577698 4_1:+49659211 None:intergenic
GGTTTCTTGATTGGAACTGG+TGG 0.581698 4_1:+49658866 None:intergenic
GGTTGTGGCTTTGGAACAGG+AGG 0.583921 4_1:+49658995 None:intergenic
TTATGATATACAGGCGTAGG+TGG 0.589531 4_1:+49659109 None:intergenic
GGCCACCTTTGAACCATGTG+AGG 0.591436 4_1:-49660534 Msa0552920:five_prime_UTR
GGTTTCTCATACACAGGTGT+AGG 0.592215 4_1:+49659139 None:intergenic
GGATGTTCAACCTTTGGTGG+TGG 0.593017 4_1:+49659049 None:intergenic
CATAAACAGGTGTAGGAGGA+GGG 0.593725 4_1:+49659245 None:intergenic
GTGGTTTCTTGAATGGAGGA+AGG 0.594939 4_1:+49658735 None:intergenic
GAAACCATGTCCACCACCAA+AGG 0.604111 4_1:-49659059 Msa0552920:CDS
GAGAGGCCAAAAGAATTTGG+AGG 0.605203 4_1:+49659501 None:intergenic
TTGGAACAGGTGGTAGAACT+GGG 0.608093 4_1:+49658822 None:intergenic
GGTTTCTTGACCGGAACCGG+TGG 0.610970 4_1:+49658971 None:intergenic
AGTAGTAATTCCAAAGCCAC+CGG 0.613019 4_1:-49658786 Msa0552920:CDS
ATAGGAATATGAGGAAATGG+AGG 0.616115 4_1:+49659346 None:intergenic
CAAACCTCCTCCGGTTCCAA+AGG 0.617561 4_1:-49658897 Msa0552920:CDS
ACTGGGTGCTCAATCTTAGG+TGG 0.618102 4_1:+49658839 None:intergenic
AAAAGAGGGTGTTTGAAGAG+AGG 0.622190 4_1:+49659484 None:intergenic
GATTCAGGTAAATCAGGATG+AGG 0.625369 4_1:+49659451 None:intergenic
CATACACAGGTGTAGGTGGA+GGG 0.625803 4_1:+49659146 None:intergenic
TTTGGAGGCAGAGGAAGAGG+TGG 0.630883 4_1:+49658707 None:intergenic
TTCTTGTAGATAGGAACAGG+AGG 0.631040 4_1:+49659370 None:intergenic
TGGAGATCATAGTACAGTTG+AGG 0.633274 4_1:-49660264 Msa0552920:CDS
AGGCCATCATGAGCAGGACA+AGG 0.637081 4_1:+49659622 None:intergenic
TTGTAAATTGGAACAACCGG+TGG 0.639441 4_1:+49658770 None:intergenic
GGAAGTGCCTTTGGAACCGG+AGG 0.640534 4_1:+49658890 None:intergenic
GGTTTGTATACTGGAGCAGG+TGG 0.652100 4_1:+49659019 None:intergenic
TTATGGTAAACAGGCACAGG+CGG 0.653317 4_1:+49659175 None:intergenic
AGAGGAAGAGGTGGACATGG+TGG 0.654271 4_1:+49658716 None:intergenic
GGTTTCTTGACTGGAACAGG+AGG 0.656712 4_1:+49659076 None:intergenic
AATGGAGGAAGGACAACTGG+TGG 0.658754 4_1:+49658746 None:intergenic
CATGGTGGTTTCTTGAATGG+AGG 0.661048 4_1:+49658731 None:intergenic
AACCTCACATGGTTCAAAGG+TGG 0.661342 4_1:+49660532 None:intergenic
GATGGAAGAAGCTCTTATGA+GGG 0.661558 4_1:+49658546 None:intergenic
GAGGCCATGATCCAAACTTG+GGG 0.674792 4_1:+49658471 None:intergenic
TGAAATTTAAGAACCTCACA+TGG 0.680500 4_1:+49660521 None:intergenic
TAATTATGAGGACTTAGTGG+AGG 0.686242 4_1:+49658452 None:intergenic
GGTTTGTATACTGGAACGGG+TGG 0.695920 4_1:+49658914 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATAATAGTTAAAAAAAAA+AGG + chr4_1:49659192-49659211 None:intergenic 10.0%
!! TCATAATAGTTAAAAAAAAA+AGG + chr4_1:49659192-49659211 None:intergenic 10.0%
!!! TTTTATCAGAAAAAATGTTT+TGG - chr4_1:49658939-49658958 Msa0552920:CDS 15.0%
!!! TTTTATCAGAAAAAATGTTT+TGG - chr4_1:49658939-49658958 Msa0552920:CDS 15.0%
!! TCCAACATTGTTTATATATT+AGG - chr4_1:49658596-49658615 Msa0552920:CDS 20.0%
!! AATAATGTGAGTATACTAAT+TGG + chr4_1:49658627-49658646 None:intergenic 20.0%
!! ATCAAGTATCTCTAAATATT+AGG - chr4_1:49659071-49659090 Msa0552920:CDS 20.0%
!!! GTTATAATATTTTGTTAGAG+AGG + chr4_1:49659221-49659240 None:intergenic 20.0%
!! ATAACTACTAATAAAGAATC+TGG - chr4_1:49659236-49659255 Msa0552920:CDS 20.0%
!! TCCAACATTGTTTATATATT+AGG - chr4_1:49658596-49658615 Msa0552920:CDS 20.0%
!! AATAATGTGAGTATACTAAT+TGG + chr4_1:49658627-49658646 None:intergenic 20.0%
!! ATCAAGTATCTCTAAATATT+AGG - chr4_1:49659071-49659090 Msa0552920:CDS 20.0%
!!! GTTATAATATTTTGTTAGAG+AGG + chr4_1:49659221-49659240 None:intergenic 20.0%
!! ATAACTACTAATAAAGAATC+TGG - chr4_1:49659236-49659255 Msa0552920:CDS 20.0%
!! GATTTTGTTAATAGTATAGC+TGG - chr4_1:49658487-49658506 Msa0552920:CDS 25.0%
!!! TGAATGCTAATGTCATTTTA+TGG - chr4_1:49658514-49658533 Msa0552920:CDS 25.0%
! AGGTTCTTAAATTTCATTGT+CGG - chr4_1:49658555-49658574 Msa0552920:CDS 25.0%
! GCCTAATATATAAACAATGT+TGG + chr4_1:49658600-49658619 None:intergenic 25.0%
! TTTCTTTGGTTAAAAAGAAG+AGG + chr4_1:49658987-49659006 None:intergenic 25.0%
! CTTGATAAAAGTGATATAGT+AGG + chr4_1:49659057-49659076 None:intergenic 25.0%
!!! AATGGACATTTTAAAACAAG+AGG - chr4_1:49659309-49659328 Msa0552920:CDS 25.0%
!!! ATGGACATTTTAAAACAAGA+GGG - chr4_1:49659310-49659329 Msa0552920:CDS 25.0%
!! TTTTACAATTTCTTGAGGAA+GGG + chr4_1:49659373-49659392 None:intergenic 25.0%
!!! TTTTGACTTGATGACAATTT+TGG + chr4_1:49659481-49659500 None:intergenic 25.0%
!! GATTTTGTTAATAGTATAGC+TGG - chr4_1:49658487-49658506 Msa0552920:CDS 25.0%
!!! TGAATGCTAATGTCATTTTA+TGG - chr4_1:49658514-49658533 Msa0552920:CDS 25.0%
! AGGTTCTTAAATTTCATTGT+CGG - chr4_1:49658555-49658574 Msa0552920:CDS 25.0%
! GCCTAATATATAAACAATGT+TGG + chr4_1:49658600-49658619 None:intergenic 25.0%
! TTTCTTTGGTTAAAAAGAAG+AGG + chr4_1:49658987-49659006 None:intergenic 25.0%
! CTTGATAAAAGTGATATAGT+AGG + chr4_1:49659057-49659076 None:intergenic 25.0%
!!! AATGGACATTTTAAAACAAG+AGG - chr4_1:49659309-49659328 Msa0552920:CDS 25.0%
!!! ATGGACATTTTAAAACAAGA+GGG - chr4_1:49659310-49659329 Msa0552920:CDS 25.0%
!! TTTTACAATTTCTTGAGGAA+GGG + chr4_1:49659373-49659392 None:intergenic 25.0%
!!! TTTTGACTTGATGACAATTT+TGG + chr4_1:49659481-49659500 None:intergenic 25.0%
TGAAATTTAAGAACCTCACA+TGG + chr4_1:49658551-49658570 None:intergenic 30.0%
! CTTAAATTTCATTGTCGGTT+TGG - chr4_1:49658560-49658579 Msa0552920:CDS 30.0%
AAAGCAGATCAATCAATACT+TGG + chr4_1:49658692-49658711 None:intergenic 30.0%
!! AGTATTGATTGATCTGCTTT+AGG - chr4_1:49658692-49658711 Msa0552920:CDS 30.0%
!! TTTGTTGTCTTTTTGGTACT+AGG - chr4_1:49658770-49658789 Msa0552920:CDS 30.0%
GACTTATGGAAGAATTTCTT+TGG + chr4_1:49659001-49659020 None:intergenic 30.0%
TATTAGGTGAAGACATAAAG+TGG - chr4_1:49659087-49659106 Msa0552920:CDS 30.0%
!! AGTAACTTGTTTGAAAAGTG+TGG - chr4_1:49659129-49659148 Msa0552920:CDS 30.0%
AACTGTGAGTATCAAATTCA+TGG + chr4_1:49659169-49659188 None:intergenic 30.0%
!!! TGGTGCATAATTTTTTTGCA+GGG - chr4_1:49659256-49659275 Msa0552920:CDS 30.0%
!!! TGGACATTTTAAAACAAGAG+GGG - chr4_1:49659311-49659330 Msa0552920:CDS 30.0%
! CTTTTACAATTTCTTGAGGA+AGG + chr4_1:49659374-49659393 None:intergenic 30.0%
! CCTTCTTTTACAATTTCTTG+AGG + chr4_1:49659378-49659397 None:intergenic 30.0%
CCTCAAGAAATTGTAAAAGA+AGG - chr4_1:49659375-49659394 Msa0552920:CDS 30.0%
! AAATGGTGGAAAAACTTTAG+GGG + chr4_1:49659646-49659665 None:intergenic 30.0%
! GAAATGGTGGAAAAACTTTA+GGG + chr4_1:49659647-49659666 None:intergenic 30.0%
TGTTTATGGAAAATCTTTGG+TGG + chr4_1:49659669-49659688 None:intergenic 30.0%
TAGATAGGAATATGAGGAAA+TGG + chr4_1:49659729-49659748 None:intergenic 30.0%
! GGGATAGGTTTTTCATATAT+AGG + chr4_1:49659807-49659826 None:intergenic 30.0%
! AAGAGGCTTTTTGGATTAAT+TGG + chr4_1:49660572-49660591 None:intergenic 30.0%
TGAAATTTAAGAACCTCACA+TGG + chr4_1:49658551-49658570 None:intergenic 30.0%
! CTTAAATTTCATTGTCGGTT+TGG - chr4_1:49658560-49658579 Msa0552920:CDS 30.0%
AAAGCAGATCAATCAATACT+TGG + chr4_1:49658692-49658711 None:intergenic 30.0%
!! AGTATTGATTGATCTGCTTT+AGG - chr4_1:49658692-49658711 Msa0552920:CDS 30.0%
!! TTTGTTGTCTTTTTGGTACT+AGG - chr4_1:49658770-49658789 Msa0552920:CDS 30.0%
GACTTATGGAAGAATTTCTT+TGG + chr4_1:49659001-49659020 None:intergenic 30.0%
TATTAGGTGAAGACATAAAG+TGG - chr4_1:49659087-49659106 Msa0552920:CDS 30.0%
!! AGTAACTTGTTTGAAAAGTG+TGG - chr4_1:49659129-49659148 Msa0552920:CDS 30.0%
AACTGTGAGTATCAAATTCA+TGG + chr4_1:49659169-49659188 None:intergenic 30.0%
!!! TGGTGCATAATTTTTTTGCA+GGG - chr4_1:49659256-49659275 Msa0552920:CDS 30.0%
!!! TGGACATTTTAAAACAAGAG+GGG - chr4_1:49659311-49659330 Msa0552920:CDS 30.0%
! CTTTTACAATTTCTTGAGGA+AGG + chr4_1:49659374-49659393 None:intergenic 30.0%
! CCTTCTTTTACAATTTCTTG+AGG + chr4_1:49659378-49659397 None:intergenic 30.0%
CCTCAAGAAATTGTAAAAGA+AGG - chr4_1:49659375-49659394 Msa0552920:CDS 30.0%
! AAATGGTGGAAAAACTTTAG+GGG + chr4_1:49659646-49659665 None:intergenic 30.0%
! GAAATGGTGGAAAAACTTTA+GGG + chr4_1:49659647-49659666 None:intergenic 30.0%
TGTTTATGGAAAATCTTTGG+TGG + chr4_1:49659669-49659688 None:intergenic 30.0%
TAGATAGGAATATGAGGAAA+TGG + chr4_1:49659729-49659748 None:intergenic 30.0%
! GGGATAGGTTTTTCATATAT+AGG + chr4_1:49659807-49659826 None:intergenic 30.0%
! AAGAGGCTTTTTGGATTAAT+TGG + chr4_1:49660572-49660591 None:intergenic 30.0%
!! ATTTCATTGTCGGTTTGGTT+TGG - chr4_1:49658565-49658584 Msa0552920:CDS 35.0%
!!! TTGGCTGTTTGTTGTCTTTT+TGG - chr4_1:49658763-49658782 Msa0552920:CDS 35.0%
! TTGGTACTAGGTTTTTGCTA+TGG - chr4_1:49658782-49658801 Msa0552920:CDS 35.0%
ATAGTACAGTTGAGGTAGTT+GGG - chr4_1:49658813-49658832 Msa0552920:CDS 35.0%
! GAACAATATTAAGACTAGCC+AGG - chr4_1:49658862-49658881 Msa0552920:CDS 35.0%
! TCCATAAGTCATTTGAAGTG+TGG - chr4_1:49659011-49659030 Msa0552920:CDS 35.0%
TCCACACTTCAAATGACTTA+TGG + chr4_1:49659015-49659034 None:intergenic 35.0%
! TGGACAGATGATAATGCATA+GGG - chr4_1:49659031-49659050 Msa0552920:CDS 35.0%
!!! CTGGTGCATAATTTTTTTGC+AGG - chr4_1:49659255-49659274 Msa0552920:CDS 35.0%
ATTGACTGCAAAGAAGCAAA+TGG - chr4_1:49659291-49659310 Msa0552920:CDS 35.0%
!!! TGACAATTTTGGTGTTTTGC+AGG + chr4_1:49659470-49659489 None:intergenic 35.0%
! CATGTACCTCCAAATTCTTT+TGG - chr4_1:49659562-49659581 Msa0552920:CDS 35.0%
! AATGGTGGAAAAACTTTAGG+GGG + chr4_1:49659645-49659664 None:intergenic 35.0%
! GGAAATGGTGGAAAAACTTT+AGG + chr4_1:49659648-49659667 None:intergenic 35.0%
AAAATCTTTGGTGGAAATGG+TGG + chr4_1:49659660-49659679 None:intergenic 35.0%
TGGAAAATCTTTGGTGGAAA+TGG + chr4_1:49659663-49659682 None:intergenic 35.0%
GGGTGTTTATGGAAAATCTT+TGG + chr4_1:49659672-49659691 None:intergenic 35.0%
AATGGAGGTTTCTTGTAGAT+AGG + chr4_1:49659711-49659730 None:intergenic 35.0%
ATAGGAATATGAGGAAATGG+AGG + chr4_1:49659726-49659745 None:intergenic 35.0%
GGTTTGTAGATAGGAATATG+AGG + chr4_1:49659735-49659754 None:intergenic 35.0%
TAGATGGGAATATGAGGAAA+GGG + chr4_1:49659759-49659778 None:intergenic 35.0%
TTCTTGTAGATGGGAATATG+AGG + chr4_1:49659765-49659784 None:intergenic 35.0%
! TTTTCATATATAGGCACAGG+TGG + chr4_1:49659798-49659817 None:intergenic 35.0%
! GGTTTTTCATATATAGGCAC+AGG + chr4_1:49659801-49659820 None:intergenic 35.0%
GGAAGAGGTTTATGATATAC+AGG + chr4_1:49659972-49659991 None:intergenic 35.0%
AAAACTGGATGTTCAACCTT+TGG + chr4_1:49660134-49660153 None:intergenic 35.0%
ACTACTGGAGGCTTATATAT+TGG + chr4_1:49660269-49660288 None:intergenic 35.0%
GGTTTGTAAATTGGAACAAC+CGG + chr4_1:49660305-49660324 None:intergenic 35.0%
! ACAACTGGTGGTTTGTAAAT+TGG + chr4_1:49660314-49660333 None:intergenic 35.0%
! TTTTTCCATCACCCTAAGTA+TGG - chr4_1:49660431-49660450 Msa0552920:five_prime_UTR 35.0%
! ATTTTCCATACTTAGGGTGA+TGG + chr4_1:49660439-49660458 None:intergenic 35.0%
ATCACCCTAAGTATGGAAAA+TGG - chr4_1:49660438-49660457 Msa0552920:five_prime_UTR 35.0%
! ATTTTCCAAAATACTTGGGG+TGG + chr4_1:49660493-49660512 None:intergenic 35.0%
!! ACCCCAAGTATTTTGGAAAA+TGG - chr4_1:49660492-49660511 Msa0552920:five_prime_UTR 35.0%
!! GCCATTTTCCAAAATACTTG+GGG + chr4_1:49660496-49660515 None:intergenic 35.0%
!! GGCCATTTTCCAAAATACTT+GGG + chr4_1:49660497-49660516 None:intergenic 35.0%
!! TGGCCATTTTCCAAAATACT+TGG + chr4_1:49660498-49660517 None:intergenic 35.0%
! AGGCTTTTTGGATTAATTGG+TGG + chr4_1:49660569-49660588 None:intergenic 35.0%
!! ATTTCATTGTCGGTTTGGTT+TGG - chr4_1:49658565-49658584 Msa0552920:CDS 35.0%
!!! TTGGCTGTTTGTTGTCTTTT+TGG - chr4_1:49658763-49658782 Msa0552920:CDS 35.0%
! TTGGTACTAGGTTTTTGCTA+TGG - chr4_1:49658782-49658801 Msa0552920:CDS 35.0%
ATAGTACAGTTGAGGTAGTT+GGG - chr4_1:49658813-49658832 Msa0552920:CDS 35.0%
! GAACAATATTAAGACTAGCC+AGG - chr4_1:49658862-49658881 Msa0552920:CDS 35.0%
! TCCATAAGTCATTTGAAGTG+TGG - chr4_1:49659011-49659030 Msa0552920:CDS 35.0%
TCCACACTTCAAATGACTTA+TGG + chr4_1:49659015-49659034 None:intergenic 35.0%
! TGGACAGATGATAATGCATA+GGG - chr4_1:49659031-49659050 Msa0552920:CDS 35.0%
!!! CTGGTGCATAATTTTTTTGC+AGG - chr4_1:49659255-49659274 Msa0552920:CDS 35.0%
ATTGACTGCAAAGAAGCAAA+TGG - chr4_1:49659291-49659310 Msa0552920:CDS 35.0%
!!! TGACAATTTTGGTGTTTTGC+AGG + chr4_1:49659470-49659489 None:intergenic 35.0%
! CATGTACCTCCAAATTCTTT+TGG - chr4_1:49659562-49659581 Msa0552920:CDS 35.0%
! AATGGTGGAAAAACTTTAGG+GGG + chr4_1:49659645-49659664 None:intergenic 35.0%
! GGAAATGGTGGAAAAACTTT+AGG + chr4_1:49659648-49659667 None:intergenic 35.0%
AAAATCTTTGGTGGAAATGG+TGG + chr4_1:49659660-49659679 None:intergenic 35.0%
TGGAAAATCTTTGGTGGAAA+TGG + chr4_1:49659663-49659682 None:intergenic 35.0%
GGGTGTTTATGGAAAATCTT+TGG + chr4_1:49659672-49659691 None:intergenic 35.0%
AATGGAGGTTTCTTGTAGAT+AGG + chr4_1:49659711-49659730 None:intergenic 35.0%
ATAGGAATATGAGGAAATGG+AGG + chr4_1:49659726-49659745 None:intergenic 35.0%
GGTTTGTAGATAGGAATATG+AGG + chr4_1:49659735-49659754 None:intergenic 35.0%
TAGATGGGAATATGAGGAAA+GGG + chr4_1:49659759-49659778 None:intergenic 35.0%
TTCTTGTAGATGGGAATATG+AGG + chr4_1:49659765-49659784 None:intergenic 35.0%
! TTTTCATATATAGGCACAGG+TGG + chr4_1:49659798-49659817 None:intergenic 35.0%
! GGTTTTTCATATATAGGCAC+AGG + chr4_1:49659801-49659820 None:intergenic 35.0%
GGAAGAGGTTTATGATATAC+AGG + chr4_1:49659972-49659991 None:intergenic 35.0%
AAAACTGGATGTTCAACCTT+TGG + chr4_1:49660134-49660153 None:intergenic 35.0%
ACTACTGGAGGCTTATATAT+TGG + chr4_1:49660269-49660288 None:intergenic 35.0%
GGTTTGTAAATTGGAACAAC+CGG + chr4_1:49660305-49660324 None:intergenic 35.0%
! ACAACTGGTGGTTTGTAAAT+TGG + chr4_1:49660314-49660333 None:intergenic 35.0%
! TTTTTCCATCACCCTAAGTA+TGG - chr4_1:49660431-49660450 Msa0552920:five_prime_UTR 35.0%
! ATTTTCCATACTTAGGGTGA+TGG + chr4_1:49660439-49660458 None:intergenic 35.0%
ATCACCCTAAGTATGGAAAA+TGG - chr4_1:49660438-49660457 Msa0552920:five_prime_UTR 35.0%
! ATTTTCCAAAATACTTGGGG+TGG + chr4_1:49660493-49660512 None:intergenic 35.0%
!! ACCCCAAGTATTTTGGAAAA+TGG - chr4_1:49660492-49660511 Msa0552920:five_prime_UTR 35.0%
!! GCCATTTTCCAAAATACTTG+GGG + chr4_1:49660496-49660515 None:intergenic 35.0%
!! GGCCATTTTCCAAAATACTT+GGG + chr4_1:49660497-49660516 None:intergenic 35.0%
!! TGGCCATTTTCCAAAATACT+TGG + chr4_1:49660498-49660517 None:intergenic 35.0%
! AGGCTTTTTGGATTAATTGG+TGG + chr4_1:49660569-49660588 None:intergenic 35.0%
AAGAACCTCACATGGTTCAA+AGG + chr4_1:49658543-49658562 None:intergenic 40.0%
GAGAAGCTACTAAGCTTCTT+TGG + chr4_1:49658662-49658681 None:intergenic 40.0%
!! AAGAGCACAAAAGTGCTCTT+TGG + chr4_1:49658745-49658764 None:intergenic 40.0%
!!! AAAGAGCACTTTTGTGCTCT+TGG - chr4_1:49658744-49658763 Msa0552920:CDS 40.0%
!! GTACTAGGTTTTTGCTATGG+TGG - chr4_1:49658785-49658804 Msa0552920:CDS 40.0%
TGGAGATCATAGTACAGTTG+AGG - chr4_1:49658805-49658824 Msa0552920:CDS 40.0%
CATAGTACAGTTGAGGTAGT+TGG - chr4_1:49658812-49658831 Msa0552920:CDS 40.0%
! GTGGACAGATGATAATGCAT+AGG - chr4_1:49659030-49659049 Msa0552920:CDS 40.0%
!!! CATTTTAAAACAAGAGGGGC+AGG - chr4_1:49659315-49659334 Msa0552920:CDS 40.0%
GCAGGTGAGCTTGATAAAAA+TGG - chr4_1:49659333-49659352 Msa0552920:CDS 40.0%
GAAGAGAGGCCAAAAGAATT+TGG + chr4_1:49659574-49659593 None:intergenic 40.0%
!! AAAAGAGGGTGTTTGAAGAG+AGG + chr4_1:49659588-49659607 None:intergenic 40.0%
GAGGAAGCTTAGGAAAAAGA+GGG + chr4_1:49659602-49659621 None:intergenic 40.0%
TGAGGAAGCTTAGGAAAAAG+AGG + chr4_1:49659603-49659622 None:intergenic 40.0%
AAATCAGGATGAGGAAGCTT+AGG + chr4_1:49659612-49659631 None:intergenic 40.0%
GATTCAGGTAAATCAGGATG+AGG + chr4_1:49659621-49659640 None:intergenic 40.0%
! ATGGTGGAAAAACTTTAGGG+GGG + chr4_1:49659644-49659663 None:intergenic 40.0%
!! GAGGAAAAAGAGGGTGTTTA+TGG + chr4_1:49659683-49659702 None:intergenic 40.0%
TAGGAACAGGAGGAAAAAGA+GGG + chr4_1:49659692-49659711 None:intergenic 40.0%
ATAGGAACAGGAGGAAAAAG+AGG + chr4_1:49659693-49659712 None:intergenic 40.0%
TTCTTGTAGATAGGAACAGG+AGG + chr4_1:49659702-49659721 None:intergenic 40.0%
GGTTTCTTGTAGATAGGAAC+AGG + chr4_1:49659705-49659724 None:intergenic 40.0%
GTAGATGGGAATATGAGGAA+AGG + chr4_1:49659760-49659779 None:intergenic 40.0%
TTCTCATAAACAGGTGTAGG+AGG + chr4_1:49659831-49659850 None:intergenic 40.0%
GGTTTCTCATAAACAGGTGT+AGG + chr4_1:49659834-49659853 None:intergenic 40.0%
GGAAGAGGTTTCTCATAAAC+AGG + chr4_1:49659840-49659859 None:intergenic 40.0%
TTATGATATACAGGCGTAGG+TGG + chr4_1:49659963-49659982 None:intergenic 40.0%
GGTTTATGATATACAGGCGT+AGG + chr4_1:49659966-49659985 None:intergenic 40.0%
AGGAGGTTTGTATACTGGAA+CGG + chr4_1:49660162-49660181 None:intergenic 40.0%
CATGGTTTCTTGATTGGAAC+TGG + chr4_1:49660209-49660228 None:intergenic 40.0%
GGCTTATATATTGGAACAGG+TGG + chr4_1:49660260-49660279 None:intergenic 40.0%
GGAGGCTTATATATTGGAAC+AGG + chr4_1:49660263-49660282 None:intergenic 40.0%
AGTAGTAATTCCAAAGCCAC+CGG - chr4_1:49660283-49660302 Msa0552920:CDS 40.0%
TTGTAAATTGGAACAACCGG+TGG + chr4_1:49660302-49660321 None:intergenic 40.0%
TGATGGAAAAAGCTCTTTGG+AGG + chr4_1:49660380-49660399 None:intergenic 40.0%
! TTTTTCCATCACCCCAAGTT+TGG - chr4_1:49660389-49660408 Msa0552920:five_prime_UTR 40.0%
! ATTTTCCAAACTTGGGGTGA+TGG + chr4_1:49660397-49660416 None:intergenic 40.0%
! GAGGCAATTTTCCAAACTTG+GGG + chr4_1:49660403-49660422 None:intergenic 40.0%
! GGAGGCAATTTTCCAAACTT+GGG + chr4_1:49660404-49660423 None:intergenic 40.0%
! TGGAGGCAATTTTCCAAACT+TGG + chr4_1:49660405-49660424 None:intergenic 40.0%
TGATGGAAAAAGCTCTTTGG+AGG + chr4_1:49660380-49660399 None:intergenic 40.0%
!! GAGGCCATTTTCCATACTTA+GGG + chr4_1:49660445-49660464 None:intergenic 40.0%
AAGAAGCTCTTATGAGGGAT+TGG + chr4_1:49660521-49660540 None:intergenic 40.0%
GATGGAAGAAGCTCTTATGA+GGG + chr4_1:49660526-49660545 None:intergenic 40.0%
TGATGGAAGAAGCTCTTATG+AGG + chr4_1:49660527-49660546 None:intergenic 40.0%
TTCTTCCATCACCCAAAGTT+TGG - chr4_1:49660536-49660555 Msa0552920:five_prime_UTR 40.0%
ACTTTCCAAACTTTGGGTGA+TGG + chr4_1:49660544-49660563 None:intergenic 40.0%
ATCACCCAAAGTTTGGAAAG+TGG - chr4_1:49660543-49660562 Msa0552920:five_prime_UTR 40.0%
AAGAACCTCACATGGTTCAA+AGG + chr4_1:49658543-49658562 None:intergenic 40.0%
GAGAAGCTACTAAGCTTCTT+TGG + chr4_1:49658662-49658681 None:intergenic 40.0%
!! AAGAGCACAAAAGTGCTCTT+TGG + chr4_1:49658745-49658764 None:intergenic 40.0%
!!! AAAGAGCACTTTTGTGCTCT+TGG - chr4_1:49658744-49658763 Msa0552920:CDS 40.0%
!! GTACTAGGTTTTTGCTATGG+TGG - chr4_1:49658785-49658804 Msa0552920:CDS 40.0%
TGGAGATCATAGTACAGTTG+AGG - chr4_1:49658805-49658824 Msa0552920:CDS 40.0%
CATAGTACAGTTGAGGTAGT+TGG - chr4_1:49658812-49658831 Msa0552920:CDS 40.0%
! GTGGACAGATGATAATGCAT+AGG - chr4_1:49659030-49659049 Msa0552920:CDS 40.0%
!!! CATTTTAAAACAAGAGGGGC+AGG - chr4_1:49659315-49659334 Msa0552920:CDS 40.0%
GCAGGTGAGCTTGATAAAAA+TGG - chr4_1:49659333-49659352 Msa0552920:CDS 40.0%
GAAGAGAGGCCAAAAGAATT+TGG + chr4_1:49659574-49659593 None:intergenic 40.0%
!! AAAAGAGGGTGTTTGAAGAG+AGG + chr4_1:49659588-49659607 None:intergenic 40.0%
GAGGAAGCTTAGGAAAAAGA+GGG + chr4_1:49659602-49659621 None:intergenic 40.0%
TGAGGAAGCTTAGGAAAAAG+AGG + chr4_1:49659603-49659622 None:intergenic 40.0%
AAATCAGGATGAGGAAGCTT+AGG + chr4_1:49659612-49659631 None:intergenic 40.0%
GATTCAGGTAAATCAGGATG+AGG + chr4_1:49659621-49659640 None:intergenic 40.0%
! ATGGTGGAAAAACTTTAGGG+GGG + chr4_1:49659644-49659663 None:intergenic 40.0%
!! GAGGAAAAAGAGGGTGTTTA+TGG + chr4_1:49659683-49659702 None:intergenic 40.0%
TAGGAACAGGAGGAAAAAGA+GGG + chr4_1:49659692-49659711 None:intergenic 40.0%
ATAGGAACAGGAGGAAAAAG+AGG + chr4_1:49659693-49659712 None:intergenic 40.0%
TTCTTGTAGATAGGAACAGG+AGG + chr4_1:49659702-49659721 None:intergenic 40.0%
GGTTTCTTGTAGATAGGAAC+AGG + chr4_1:49659705-49659724 None:intergenic 40.0%
GTAGATGGGAATATGAGGAA+AGG + chr4_1:49659760-49659779 None:intergenic 40.0%
TTCTCATAAACAGGTGTAGG+AGG + chr4_1:49659831-49659850 None:intergenic 40.0%
GGTTTCTCATAAACAGGTGT+AGG + chr4_1:49659834-49659853 None:intergenic 40.0%
GGAAGAGGTTTCTCATAAAC+AGG + chr4_1:49659840-49659859 None:intergenic 40.0%
TTATGATATACAGGCGTAGG+TGG + chr4_1:49659963-49659982 None:intergenic 40.0%
GGTTTATGATATACAGGCGT+AGG + chr4_1:49659966-49659985 None:intergenic 40.0%
AGGAGGTTTGTATACTGGAA+CGG + chr4_1:49660162-49660181 None:intergenic 40.0%
CATGGTTTCTTGATTGGAAC+TGG + chr4_1:49660209-49660228 None:intergenic 40.0%
GGCTTATATATTGGAACAGG+TGG + chr4_1:49660260-49660279 None:intergenic 40.0%
GGAGGCTTATATATTGGAAC+AGG + chr4_1:49660263-49660282 None:intergenic 40.0%
AGTAGTAATTCCAAAGCCAC+CGG - chr4_1:49660283-49660302 Msa0552920:CDS 40.0%
TTGTAAATTGGAACAACCGG+TGG + chr4_1:49660302-49660321 None:intergenic 40.0%
TGATGGAAAAAGCTCTTTGG+AGG + chr4_1:49660380-49660399 None:intergenic 40.0%
! TTTTTCCATCACCCCAAGTT+TGG - chr4_1:49660389-49660408 Msa0552920:five_prime_UTR 40.0%
! ATTTTCCAAACTTGGGGTGA+TGG + chr4_1:49660397-49660416 None:intergenic 40.0%
! GAGGCAATTTTCCAAACTTG+GGG + chr4_1:49660403-49660422 None:intergenic 40.0%
! GGAGGCAATTTTCCAAACTT+GGG + chr4_1:49660404-49660423 None:intergenic 40.0%
! TGGAGGCAATTTTCCAAACT+TGG + chr4_1:49660405-49660424 None:intergenic 40.0%
TGATGGAAAAAGCTCTTTGG+AGG + chr4_1:49660380-49660399 None:intergenic 40.0%
!! GAGGCCATTTTCCATACTTA+GGG + chr4_1:49660445-49660464 None:intergenic 40.0%
AAGAAGCTCTTATGAGGGAT+TGG + chr4_1:49660521-49660540 None:intergenic 40.0%
GATGGAAGAAGCTCTTATGA+GGG + chr4_1:49660526-49660545 None:intergenic 40.0%
TGATGGAAGAAGCTCTTATG+AGG + chr4_1:49660527-49660546 None:intergenic 40.0%
TTCTTCCATCACCCAAAGTT+TGG - chr4_1:49660536-49660555 Msa0552920:five_prime_UTR 40.0%
ACTTTCCAAACTTTGGGTGA+TGG + chr4_1:49660544-49660563 None:intergenic 40.0%
ATCACCCAAAGTTTGGAAAG+TGG - chr4_1:49660543-49660562 Msa0552920:five_prime_UTR 40.0%
AACCTCACATGGTTCAAAGG+TGG + chr4_1:49658540-49658559 None:intergenic 45.0%
! ACAAAGTACCTGAGAAAGCC+TGG + chr4_1:49658883-49658902 None:intergenic 45.0%
GAGAGGCCAAAAGAATTTGG+AGG + chr4_1:49659571-49659590 None:intergenic 45.0%
! AAAACTTTAGGGGGGGATTC+AGG + chr4_1:49659636-49659655 None:intergenic 45.0%
! TGGTGGAAAAACTTTAGGGG+GGG + chr4_1:49659643-49659662 None:intergenic 45.0%
GGAAAGGGAGGTTTGTAGAT+AGG + chr4_1:49659744-49659763 None:intergenic 45.0%
ATGGGAATATGAGGAAAGGG+AGG + chr4_1:49659756-49659775 None:intergenic 45.0%
GGGCAAGGTTTCTTGTAGAT+GGG + chr4_1:49659774-49659793 None:intergenic 45.0%
AGGGCAAGGTTTCTTGTAGA+TGG + chr4_1:49659775-49659794 None:intergenic 45.0%
CATATATAGGCACAGGTGGA+GGG + chr4_1:49659794-49659813 None:intergenic 45.0%
TCATATATAGGCACAGGTGG+AGG + chr4_1:49659795-49659814 None:intergenic 45.0%
CATAAACAGGTGTAGGAGGA+GGG + chr4_1:49659827-49659846 None:intergenic 45.0%
TCATAAACAGGTGTAGGAGG+AGG + chr4_1:49659828-49659847 None:intergenic 45.0%
TTCTCATAGACAGGTGTAGG+TGG + chr4_1:49659864-49659883 None:intergenic 45.0%
GGTTTCTCATAGACAGGTGT+AGG + chr4_1:49659867-49659886 None:intergenic 45.0%
GGAAGAGGTTTCTCATAGAC+AGG + chr4_1:49659873-49659892 None:intergenic 45.0%
TTATGGTAAACAGGCACAGG+CGG + chr4_1:49659897-49659916 None:intergenic 45.0%
GGTTTATGGTAAACAGGCAC+AGG + chr4_1:49659900-49659919 None:intergenic 45.0%
GGGAGAGGTTTATGGTAAAC+AGG + chr4_1:49659906-49659925 None:intergenic 45.0%
TTCTCATACACAGGTGTAGG+TGG + chr4_1:49659930-49659949 None:intergenic 45.0%
GGTTTCTCATACACAGGTGT+AGG + chr4_1:49659933-49659952 None:intergenic 45.0%
GGAAGAGGTTTCTCATACAC+AGG + chr4_1:49659939-49659958 None:intergenic 45.0%
CATGGTTTCTTGACTGGAAC+AGG + chr4_1:49659999-49660018 None:intergenic 45.0%
ACTGGATGTTCAACCTTTGG+TGG + chr4_1:49660026-49660045 None:intergenic 45.0%
GGAACTGGATGTTCAACCTT+TGG + chr4_1:49660029-49660048 None:intergenic 45.0%
ACAGGAGGAGGTTTGTATAC+TGG + chr4_1:49660062-49660081 None:intergenic 45.0%
ACTGGATGTTCAACCTTTGG+CGG + chr4_1:49660026-49660045 None:intergenic 45.0%
GGAGGTTTGTATACTGGAAC+GGG + chr4_1:49660161-49660180 None:intergenic 45.0%
TCCAGTATACAAACCTCCTC+CGG - chr4_1:49660058-49660077 Msa0552920:intron 45.0%
TTCTTGATTGGAACTGGTGG+TGG + chr4_1:49660203-49660222 None:intergenic 45.0%
GGTTTCTTGATTGGAACTGG+TGG + chr4_1:49660206-49660225 None:intergenic 45.0%
GGTGGACATGGTTTCTTGAT+TGG + chr4_1:49660215-49660234 None:intergenic 45.0%
TGCTCAATCTTAGGTGGACA+TGG + chr4_1:49660227-49660246 None:intergenic 45.0%
AGAACTGGGTGCTCAATCTT+AGG + chr4_1:49660236-49660255 None:intergenic 45.0%
TTGGAACAGGTGGTAGAACT+GGG + chr4_1:49660250-49660269 None:intergenic 45.0%
ATTGGAACAGGTGGTAGAAC+TGG + chr4_1:49660251-49660270 None:intergenic 45.0%
!! GGCTTTGGAATTACTACTGG+AGG + chr4_1:49660281-49660300 None:intergenic 45.0%
!! GGTGGCTTTGGAATTACTAC+TGG + chr4_1:49660284-49660303 None:intergenic 45.0%
TTGAATGGAGGAAGGACAAC+TGG + chr4_1:49660329-49660348 None:intergenic 45.0%
GTGGTTTCTTGAATGGAGGA+AGG + chr4_1:49660337-49660356 None:intergenic 45.0%
CATGGTGGTTTCTTGAATGG+AGG + chr4_1:49660341-49660360 None:intergenic 45.0%
GGACATGGTGGTTTCTTGAA+TGG + chr4_1:49660344-49660363 None:intergenic 45.0%
! AAAAAGCTCTTTGGAGGCAG+AGG + chr4_1:49660374-49660393 None:intergenic 45.0%
!! GGGTGATGGAAAAAGCTCTT+TGG + chr4_1:49660383-49660402 None:intergenic 45.0%
!! GGGTGATGGAAAAAGCTCTT+TGG + chr4_1:49660383-49660402 None:intergenic 45.0%
!! GGAGGCCATTTTCCATACTT+AGG + chr4_1:49660446-49660465 None:intergenic 45.0%
! AAGAAGCTCTTTGGAGGCAA+TGG + chr4_1:49660467-49660486 None:intergenic 45.0%
! TTCCACCACCCCAAGTATTT+TGG - chr4_1:49660485-49660504 Msa0552920:five_prime_UTR 45.0%
TTCCAAAATACTTGGGGTGG+TGG + chr4_1:49660490-49660509 None:intergenic 45.0%
AAGCTCTTATGAGGGATTGG+TGG + chr4_1:49660518-49660537 None:intergenic 45.0%
! GTGGCCACTTTCCAAACTTT+GGG + chr4_1:49660550-49660569 None:intergenic 45.0%
ATGATCCAAACTTGGGGTGA+TGG + chr4_1:49660595-49660614 None:intergenic 45.0%
ATCACCCCAAGTTTGGATCA+TGG - chr4_1:49660594-49660613 Msa0552920:five_prime_UTR 45.0%
AACCTCACATGGTTCAAAGG+TGG + chr4_1:49658540-49658559 None:intergenic 45.0%
! ACAAAGTACCTGAGAAAGCC+TGG + chr4_1:49658883-49658902 None:intergenic 45.0%
GAGAGGCCAAAAGAATTTGG+AGG + chr4_1:49659571-49659590 None:intergenic 45.0%
! AAAACTTTAGGGGGGGATTC+AGG + chr4_1:49659636-49659655 None:intergenic 45.0%
! TGGTGGAAAAACTTTAGGGG+GGG + chr4_1:49659643-49659662 None:intergenic 45.0%
GGAAAGGGAGGTTTGTAGAT+AGG + chr4_1:49659744-49659763 None:intergenic 45.0%
ATGGGAATATGAGGAAAGGG+AGG + chr4_1:49659756-49659775 None:intergenic 45.0%
GGGCAAGGTTTCTTGTAGAT+GGG + chr4_1:49659774-49659793 None:intergenic 45.0%
AGGGCAAGGTTTCTTGTAGA+TGG + chr4_1:49659775-49659794 None:intergenic 45.0%
CATATATAGGCACAGGTGGA+GGG + chr4_1:49659794-49659813 None:intergenic 45.0%
TCATATATAGGCACAGGTGG+AGG + chr4_1:49659795-49659814 None:intergenic 45.0%
CATAAACAGGTGTAGGAGGA+GGG + chr4_1:49659827-49659846 None:intergenic 45.0%
TCATAAACAGGTGTAGGAGG+AGG + chr4_1:49659828-49659847 None:intergenic 45.0%
TTCTCATAGACAGGTGTAGG+TGG + chr4_1:49659864-49659883 None:intergenic 45.0%
GGTTTCTCATAGACAGGTGT+AGG + chr4_1:49659867-49659886 None:intergenic 45.0%
GGAAGAGGTTTCTCATAGAC+AGG + chr4_1:49659873-49659892 None:intergenic 45.0%
TTATGGTAAACAGGCACAGG+CGG + chr4_1:49659897-49659916 None:intergenic 45.0%
GGTTTATGGTAAACAGGCAC+AGG + chr4_1:49659900-49659919 None:intergenic 45.0%
GGGAGAGGTTTATGGTAAAC+AGG + chr4_1:49659906-49659925 None:intergenic 45.0%
TTCTCATACACAGGTGTAGG+TGG + chr4_1:49659930-49659949 None:intergenic 45.0%
GGTTTCTCATACACAGGTGT+AGG + chr4_1:49659933-49659952 None:intergenic 45.0%
GGAAGAGGTTTCTCATACAC+AGG + chr4_1:49659939-49659958 None:intergenic 45.0%
CATGGTTTCTTGACTGGAAC+AGG + chr4_1:49659999-49660018 None:intergenic 45.0%
ACTGGATGTTCAACCTTTGG+TGG + chr4_1:49660026-49660045 None:intergenic 45.0%
GGAACTGGATGTTCAACCTT+TGG + chr4_1:49660029-49660048 None:intergenic 45.0%
ACAGGAGGAGGTTTGTATAC+TGG + chr4_1:49660062-49660081 None:intergenic 45.0%
ACTGGATGTTCAACCTTTGG+CGG + chr4_1:49660026-49660045 None:intergenic 45.0%
GGAGGTTTGTATACTGGAAC+GGG + chr4_1:49660161-49660180 None:intergenic 45.0%
TCCAGTATACAAACCTCCTC+CGG - chr4_1:49660058-49660077 Msa0552920:intron 45.0%
TTCTTGATTGGAACTGGTGG+TGG + chr4_1:49660203-49660222 None:intergenic 45.0%
GGTTTCTTGATTGGAACTGG+TGG + chr4_1:49660206-49660225 None:intergenic 45.0%
GGTGGACATGGTTTCTTGAT+TGG + chr4_1:49660215-49660234 None:intergenic 45.0%
TGCTCAATCTTAGGTGGACA+TGG + chr4_1:49660227-49660246 None:intergenic 45.0%
AGAACTGGGTGCTCAATCTT+AGG + chr4_1:49660236-49660255 None:intergenic 45.0%
TTGGAACAGGTGGTAGAACT+GGG + chr4_1:49660250-49660269 None:intergenic 45.0%
ATTGGAACAGGTGGTAGAAC+TGG + chr4_1:49660251-49660270 None:intergenic 45.0%
!! GGCTTTGGAATTACTACTGG+AGG + chr4_1:49660281-49660300 None:intergenic 45.0%
!! GGTGGCTTTGGAATTACTAC+TGG + chr4_1:49660284-49660303 None:intergenic 45.0%
TTGAATGGAGGAAGGACAAC+TGG + chr4_1:49660329-49660348 None:intergenic 45.0%
GTGGTTTCTTGAATGGAGGA+AGG + chr4_1:49660337-49660356 None:intergenic 45.0%
CATGGTGGTTTCTTGAATGG+AGG + chr4_1:49660341-49660360 None:intergenic 45.0%
GGACATGGTGGTTTCTTGAA+TGG + chr4_1:49660344-49660363 None:intergenic 45.0%
! AAAAAGCTCTTTGGAGGCAG+AGG + chr4_1:49660374-49660393 None:intergenic 45.0%
!! GGGTGATGGAAAAAGCTCTT+TGG + chr4_1:49660383-49660402 None:intergenic 45.0%
!! GGGTGATGGAAAAAGCTCTT+TGG + chr4_1:49660383-49660402 None:intergenic 45.0%
!! GGAGGCCATTTTCCATACTT+AGG + chr4_1:49660446-49660465 None:intergenic 45.0%
! AAGAAGCTCTTTGGAGGCAA+TGG + chr4_1:49660467-49660486 None:intergenic 45.0%
! TTCCACCACCCCAAGTATTT+TGG - chr4_1:49660485-49660504 Msa0552920:five_prime_UTR 45.0%
TTCCAAAATACTTGGGGTGG+TGG + chr4_1:49660490-49660509 None:intergenic 45.0%
AAGCTCTTATGAGGGATTGG+TGG + chr4_1:49660518-49660537 None:intergenic 45.0%
! GTGGCCACTTTCCAAACTTT+GGG + chr4_1:49660550-49660569 None:intergenic 45.0%
ATGATCCAAACTTGGGGTGA+TGG + chr4_1:49660595-49660614 None:intergenic 45.0%
ATCACCCCAAGTTTGGATCA+TGG - chr4_1:49660594-49660613 Msa0552920:five_prime_UTR 45.0%
ACAGTTGAGGTAGTTGGGCT+TGG - chr4_1:49658818-49658837 Msa0552920:CDS 50.0%
! AAGACTAGCCAGGCTTTCTC+AGG - chr4_1:49658872-49658891 Msa0552920:CDS 50.0%
! TTTTGCAGGCCATCATGAGC+AGG + chr4_1:49659456-49659475 None:intergenic 50.0%
ACCAGCAGCAGCAGTACTTA+GGG + chr4_1:49659520-49659539 None:intergenic 50.0%
TACCAGCAGCAGCAGTACTT+AGG + chr4_1:49659521-49659540 None:intergenic 50.0%
TCATAGACAGGTGTAGGTGG+AGG + chr4_1:49659861-49659880 None:intergenic 50.0%
TAGGTGGAGGGAGAGGTTTA+TGG + chr4_1:49659914-49659933 None:intergenic 50.0%
CATACACAGGTGTAGGTGGA+GGG + chr4_1:49659926-49659945 None:intergenic 50.0%
TCATACACAGGTGTAGGTGG+AGG + chr4_1:49659927-49659946 None:intergenic 50.0%
TGATATACAGGCGTAGGTGG+AGG + chr4_1:49659960-49659979 None:intergenic 50.0%
TTCTTGACTGGAACAGGAGG+AGG + chr4_1:49659993-49660012 None:intergenic 50.0%
GGTTTCTTGACTGGAACAGG+AGG + chr4_1:49659996-49660015 None:intergenic 50.0%
GGTGGACATGGTTTCTTGAC+TGG + chr4_1:49660005-49660024 None:intergenic 50.0%
GAAACCATGTCCACCACCAA+AGG - chr4_1:49660010-49660029 Msa0552920:intron 50.0%
!! TCAACCTTTGGTGGTGGACA+TGG + chr4_1:49660017-49660036 None:intergenic 50.0%
GGATGTTCAACCTTTGGTGG+TGG + chr4_1:49660023-49660042 None:intergenic 50.0%
TTGTATACTGGAGCAGGTGG+TGG + chr4_1:49660050-49660069 None:intergenic 50.0%
GGTTTGTATACTGGAGCAGG+TGG + chr4_1:49660053-49660072 None:intergenic 50.0%
GGAGGTTTGTATACTGGAGC+AGG + chr4_1:49660056-49660075 None:intergenic 50.0%
CATGGTTTCTTGACCGGAAC+CGG + chr4_1:49660104-49660123 None:intergenic 50.0%
GGTGGACATGGTTTCTTGAC+CGG + chr4_1:49660005-49660024 None:intergenic 50.0%
ACTGGAACGGGTGGTAAAAC+TGG + chr4_1:49660149-49660168 None:intergenic 50.0%
GGTTTGTATACTGGAACGGG+TGG + chr4_1:49660158-49660177 None:intergenic 50.0%
ACCGGAGGAGGTTTGTATAC+TGG + chr4_1:49660167-49660186 None:intergenic 50.0%
ACTGGGTGCTCAATCTTAGG+TGG + chr4_1:49660233-49660252 None:intergenic 50.0%
ATTGGAACAACCGGTGGCTT+TGG + chr4_1:49660296-49660315 None:intergenic 50.0%
AATGGAGGAAGGACAACTGG+TGG + chr4_1:49660326-49660345 None:intergenic 50.0%
! AAGCTCTTTGGAGGCAATGG+AGG + chr4_1:49660464-49660483 None:intergenic 50.0%
TGGTGGAAGAAGCTCTTTGG+AGG + chr4_1:49660473-49660492 None:intergenic 50.0%
! GGTGGCCACTTTCCAAACTT+TGG + chr4_1:49660551-49660570 None:intergenic 50.0%
!!! GGGTGATGGAAGAGGCTTTT+TGG + chr4_1:49660581-49660600 None:intergenic 50.0%
!! CAAACTTGGGGTGATGGAAG+AGG + chr4_1:49660589-49660608 None:intergenic 50.0%
CTCTTCCATCACCCCAAGTT+TGG - chr4_1:49660587-49660606 Msa0552920:five_prime_UTR 50.0%
GAGGCCATGATCCAAACTTG+GGG + chr4_1:49660601-49660620 None:intergenic 50.0%
GGAGGCCATGATCCAAACTT+GGG + chr4_1:49660602-49660621 None:intergenic 50.0%
TGGAGGCCATGATCCAAACT+TGG + chr4_1:49660603-49660622 None:intergenic 50.0%
ACAGTTGAGGTAGTTGGGCT+TGG - chr4_1:49658818-49658837 Msa0552920:CDS 50.0%
! AAGACTAGCCAGGCTTTCTC+AGG - chr4_1:49658872-49658891 Msa0552920:CDS 50.0%
! TTTTGCAGGCCATCATGAGC+AGG + chr4_1:49659456-49659475 None:intergenic 50.0%
ACCAGCAGCAGCAGTACTTA+GGG + chr4_1:49659520-49659539 None:intergenic 50.0%
TACCAGCAGCAGCAGTACTT+AGG + chr4_1:49659521-49659540 None:intergenic 50.0%
TCATAGACAGGTGTAGGTGG+AGG + chr4_1:49659861-49659880 None:intergenic 50.0%
TAGGTGGAGGGAGAGGTTTA+TGG + chr4_1:49659914-49659933 None:intergenic 50.0%
CATACACAGGTGTAGGTGGA+GGG + chr4_1:49659926-49659945 None:intergenic 50.0%
TCATACACAGGTGTAGGTGG+AGG + chr4_1:49659927-49659946 None:intergenic 50.0%
TGATATACAGGCGTAGGTGG+AGG + chr4_1:49659960-49659979 None:intergenic 50.0%
TTCTTGACTGGAACAGGAGG+AGG + chr4_1:49659993-49660012 None:intergenic 50.0%
GGTTTCTTGACTGGAACAGG+AGG + chr4_1:49659996-49660015 None:intergenic 50.0%
GGTGGACATGGTTTCTTGAC+TGG + chr4_1:49660005-49660024 None:intergenic 50.0%
GAAACCATGTCCACCACCAA+AGG - chr4_1:49660010-49660029 Msa0552920:intron 50.0%
!! TCAACCTTTGGTGGTGGACA+TGG + chr4_1:49660017-49660036 None:intergenic 50.0%
GGATGTTCAACCTTTGGTGG+TGG + chr4_1:49660023-49660042 None:intergenic 50.0%
TTGTATACTGGAGCAGGTGG+TGG + chr4_1:49660050-49660069 None:intergenic 50.0%
GGTTTGTATACTGGAGCAGG+TGG + chr4_1:49660053-49660072 None:intergenic 50.0%
GGAGGTTTGTATACTGGAGC+AGG + chr4_1:49660056-49660075 None:intergenic 50.0%
CATGGTTTCTTGACCGGAAC+CGG + chr4_1:49660104-49660123 None:intergenic 50.0%
GGTGGACATGGTTTCTTGAC+CGG + chr4_1:49660005-49660024 None:intergenic 50.0%
ACTGGAACGGGTGGTAAAAC+TGG + chr4_1:49660149-49660168 None:intergenic 50.0%
GGTTTGTATACTGGAACGGG+TGG + chr4_1:49660158-49660177 None:intergenic 50.0%
ACCGGAGGAGGTTTGTATAC+TGG + chr4_1:49660167-49660186 None:intergenic 50.0%
ACTGGGTGCTCAATCTTAGG+TGG + chr4_1:49660233-49660252 None:intergenic 50.0%
ATTGGAACAACCGGTGGCTT+TGG + chr4_1:49660296-49660315 None:intergenic 50.0%
AATGGAGGAAGGACAACTGG+TGG + chr4_1:49660326-49660345 None:intergenic 50.0%
! AAGCTCTTTGGAGGCAATGG+AGG + chr4_1:49660464-49660483 None:intergenic 50.0%
TGGTGGAAGAAGCTCTTTGG+AGG + chr4_1:49660473-49660492 None:intergenic 50.0%
! GGTGGCCACTTTCCAAACTT+TGG + chr4_1:49660551-49660570 None:intergenic 50.0%
!!! GGGTGATGGAAGAGGCTTTT+TGG + chr4_1:49660581-49660600 None:intergenic 50.0%
!! CAAACTTGGGGTGATGGAAG+AGG + chr4_1:49660589-49660608 None:intergenic 50.0%
CTCTTCCATCACCCCAAGTT+TGG - chr4_1:49660587-49660606 Msa0552920:five_prime_UTR 50.0%
GAGGCCATGATCCAAACTTG+GGG + chr4_1:49660601-49660620 None:intergenic 50.0%
GGAGGCCATGATCCAAACTT+GGG + chr4_1:49660602-49660621 None:intergenic 50.0%
TGGAGGCCATGATCCAAACT+TGG + chr4_1:49660603-49660622 None:intergenic 50.0%
GGCCACCTTTGAACCATGTG+AGG - chr4_1:49658535-49658554 Msa0552920:CDS 55.0%
GCACCTTGTCCTGCTCATGA+TGG - chr4_1:49659444-49659463 Msa0552920:CDS 55.0%
AGGCCATCATGAGCAGGACA+AGG + chr4_1:49659450-49659469 None:intergenic 55.0%
! ACCCTAAGTACTGCTGCTGC+TGG - chr4_1:49659516-49659535 Msa0552920:CDS 55.0%
GGGGGGGATTCAGGTAAATC+AGG + chr4_1:49659627-49659646 None:intergenic 55.0%
ACAGGTGTAGGAGGAGGGAT+AGG + chr4_1:49659822-49659841 None:intergenic 55.0%
ACAGGTGTAGGTGGAGGAAG+AGG + chr4_1:49659855-49659874 None:intergenic 55.0%
ACTGGAACAGGAGGAGGAAG+AGG + chr4_1:49659987-49660006 None:intergenic 55.0%
!! TGTGGCTTTGGAACAGGAGG+AGG + chr4_1:49660074-49660093 None:intergenic 55.0%
!! GGTTGTGGCTTTGGAACAGG+AGG + chr4_1:49660077-49660096 None:intergenic 55.0%
!! GGTGGTTGTGGCTTTGGAAC+AGG + chr4_1:49660080-49660099 None:intergenic 55.0%
TCCAAAGCCACAACCACCAC+CGG - chr4_1:49660082-49660101 Msa0552920:intron 55.0%
GAAACCATGTCCACCGCCAA+AGG - chr4_1:49660115-49660134 Msa0552920:intron 55.0%
TCAACCTTTGGCGGTGGACA+TGG + chr4_1:49660122-49660141 None:intergenic 55.0%
GGATGTTCAACCTTTGGCGG+TGG + chr4_1:49660128-49660147 None:intergenic 55.0%
CAAACCTCCTCCGGTTCCAA+AGG - chr4_1:49660172-49660191 Msa0552920:intron 55.0%
!! GGTGGAAGTGCCTTTGGAAC+CGG + chr4_1:49660185-49660204 None:intergenic 55.0%
!! ACTGGTGGTGGAAGTGCCTT+TGG + chr4_1:49660191-49660210 None:intergenic 55.0%
AGAGGAAGAGGTGGACATGG+TGG + chr4_1:49660356-49660375 None:intergenic 55.0%
TTTGGAGGCAGAGGAAGAGG+TGG + chr4_1:49660365-49660384 None:intergenic 55.0%
! CTCTTTGGAGGCAGAGGAAG+AGG + chr4_1:49660368-49660387 None:intergenic 55.0%
!! GGGTGGTGGAAGAAGCTCTT+TGG + chr4_1:49660476-49660495 None:intergenic 55.0%
GGCCACCTTTGAACCATGTG+AGG - chr4_1:49658535-49658554 Msa0552920:CDS 55.0%
GCACCTTGTCCTGCTCATGA+TGG - chr4_1:49659444-49659463 Msa0552920:CDS 55.0%
AGGCCATCATGAGCAGGACA+AGG + chr4_1:49659450-49659469 None:intergenic 55.0%
! ACCCTAAGTACTGCTGCTGC+TGG - chr4_1:49659516-49659535 Msa0552920:CDS 55.0%
GGGGGGGATTCAGGTAAATC+AGG + chr4_1:49659627-49659646 None:intergenic 55.0%
ACAGGTGTAGGAGGAGGGAT+AGG + chr4_1:49659822-49659841 None:intergenic 55.0%
ACAGGTGTAGGTGGAGGAAG+AGG + chr4_1:49659855-49659874 None:intergenic 55.0%
ACTGGAACAGGAGGAGGAAG+AGG + chr4_1:49659987-49660006 None:intergenic 55.0%
!! TGTGGCTTTGGAACAGGAGG+AGG + chr4_1:49660074-49660093 None:intergenic 55.0%
!! GGTTGTGGCTTTGGAACAGG+AGG + chr4_1:49660077-49660096 None:intergenic 55.0%
!! GGTGGTTGTGGCTTTGGAAC+AGG + chr4_1:49660080-49660099 None:intergenic 55.0%
TCCAAAGCCACAACCACCAC+CGG - chr4_1:49660082-49660101 Msa0552920:intron 55.0%
GAAACCATGTCCACCGCCAA+AGG - chr4_1:49660115-49660134 Msa0552920:intron 55.0%
TCAACCTTTGGCGGTGGACA+TGG + chr4_1:49660122-49660141 None:intergenic 55.0%
GGATGTTCAACCTTTGGCGG+TGG + chr4_1:49660128-49660147 None:intergenic 55.0%
CAAACCTCCTCCGGTTCCAA+AGG - chr4_1:49660172-49660191 Msa0552920:intron 55.0%
!! GGTGGAAGTGCCTTTGGAAC+CGG + chr4_1:49660185-49660204 None:intergenic 55.0%
!! ACTGGTGGTGGAAGTGCCTT+TGG + chr4_1:49660191-49660210 None:intergenic 55.0%
AGAGGAAGAGGTGGACATGG+TGG + chr4_1:49660356-49660375 None:intergenic 55.0%
TTTGGAGGCAGAGGAAGAGG+TGG + chr4_1:49660365-49660384 None:intergenic 55.0%
! CTCTTTGGAGGCAGAGGAAG+AGG + chr4_1:49660368-49660387 None:intergenic 55.0%
!! GGGTGGTGGAAGAAGCTCTT+TGG + chr4_1:49660476-49660495 None:intergenic 55.0%
ATAGGCACAGGTGGAGGGCA+AGG + chr4_1:49659789-49659808 None:intergenic 60.0%
TGGTAAACAGGCACAGGCGG+AGG + chr4_1:49659894-49659913 None:intergenic 60.0%
ACAGGTGTAGGTGGAGGGAG+AGG + chr4_1:49659921-49659940 None:intergenic 60.0%
ACAGGCGTAGGTGGAGGAAG+AGG + chr4_1:49659954-49659973 None:intergenic 60.0%
!! ACTGGAGCAGGTGGTGGAAC+TGG + chr4_1:49660044-49660063 None:intergenic 60.0%
! ACCGGTGGTGGTTGTGGCTT+TGG + chr4_1:49660086-49660105 None:intergenic 60.0%
TTCTTGACCGGAACCGGTGG+TGG + chr4_1:49660098-49660117 None:intergenic 60.0%
GGTTTCTTGACCGGAACCGG+TGG + chr4_1:49660101-49660120 None:intergenic 60.0%
!! AGTGCCTTTGGAACCGGAGG+AGG + chr4_1:49660179-49660198 None:intergenic 60.0%
!! GGAAGTGCCTTTGGAACCGG+AGG + chr4_1:49660182-49660201 None:intergenic 60.0%
GGCAGAGGAAGAGGTGGACA+TGG + chr4_1:49660359-49660378 None:intergenic 60.0%
ATAGGCACAGGTGGAGGGCA+AGG + chr4_1:49659789-49659808 None:intergenic 60.0%
TGGTAAACAGGCACAGGCGG+AGG + chr4_1:49659894-49659913 None:intergenic 60.0%
ACAGGTGTAGGTGGAGGGAG+AGG + chr4_1:49659921-49659940 None:intergenic 60.0%
ACAGGCGTAGGTGGAGGAAG+AGG + chr4_1:49659954-49659973 None:intergenic 60.0%
!! ACTGGAGCAGGTGGTGGAAC+TGG + chr4_1:49660044-49660063 None:intergenic 60.0%
! ACCGGTGGTGGTTGTGGCTT+TGG + chr4_1:49660086-49660105 None:intergenic 60.0%
TTCTTGACCGGAACCGGTGG+TGG + chr4_1:49660098-49660117 None:intergenic 60.0%
GGTTTCTTGACCGGAACCGG+TGG + chr4_1:49660101-49660120 None:intergenic 60.0%
!! AGTGCCTTTGGAACCGGAGG+AGG + chr4_1:49660179-49660198 None:intergenic 60.0%
!! GGAAGTGCCTTTGGAACCGG+AGG + chr4_1:49660182-49660201 None:intergenic 60.0%
GGCAGAGGAAGAGGTGGACA+TGG + chr4_1:49660359-49660378 None:intergenic 60.0%
ACAGGCACAGGCGGAGGAAG+AGG + chr4_1:49659888-49659907 None:intergenic 65.0%
!! GCCACAACCACCACCGGTTC+CGG - chr4_1:49660088-49660107 Msa0552920:intron 65.0%
! ACCGGAACCGGTGGTGGTTG+TGG + chr4_1:49660092-49660111 None:intergenic 65.0%
ACAGGCACAGGCGGAGGAAG+AGG + chr4_1:49659888-49659907 None:intergenic 65.0%
!! GCCACAACCACCACCGGTTC+CGG - chr4_1:49660088-49660107 Msa0552920:intron 65.0%
! ACCGGAACCGGTGGTGGTTG+TGG + chr4_1:49660092-49660111 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 49658454 49660637 49658454 ID=Msa0552920;Name=Msa0552920
chr4_1 mRNA 49658454 49660637 49658454 ID=Msa0552920-mRNA-1;Parent=Msa0552920;Name=Msa0552920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=268|1|0.5|1|1|0.5|2|0|511
chr4_1 exon 49658454 49659814 49658454 ID=Msa0552920-mRNA-1:exon:13936;Parent=Msa0552920-mRNA-1
chr4_1 exon 49660198 49660637 49660198 ID=Msa0552920-mRNA-1:exon:13935;Parent=Msa0552920-mRNA-1
chr4_1 five_prime_UTR 49660370 49660637 49660370 ID=Msa0552920-mRNA-1:five_prime_utr;Parent=Msa0552920-mRNA-1
chr4_1 CDS 49660198 49660369 49660198 ID=Msa0552920-mRNA-1:cds;Parent=Msa0552920-mRNA-1
chr4_1 CDS 49658454 49659814 49658454 ID=Msa0552920-mRNA-1:cds;Parent=Msa0552920-mRNA-1
Gene Sequence

>Msa0552920

ATGCAGATTTTCACTCTGCGCCAAAGAGCACTTTTGTGCTCTTGGCTGTTTGTTGTCTTTTTGGTACTAGGTTTTTGCTATGGTGGAGATCATAGTACAGTTGAGGTAGTTGGGCTTGGAGAATGCGCAGATTGCATTCAGAACAATATTAAGACTAGCCAGGCTTTCTCAGGGCTACATGTAACAATTGACTGCAAAGAAGCAAATGGACATTTTAAAACAAGAGGGGCAGGTGAGCTTGATAAAAATGGAAATTTCAAAGTATCCCTTCCTCAAGAAATTGTAAAAGAAGGTGAACTGAAAGAAGAATGTTATGCTCAGCTACATAGTGCAACAGCTGCACCTTGTCCTGCTCATGATGGCCTGCAAAACACCAAAATTGTCATCAAGTCAAAATCTGATGACAAACACACCCTAAGTACTGCTGCTGCTGGTAAACTCAAATTTTCATCAGCAACATGTACCTCCAAATTCTTTTGGCCTCTCTTCAAACACCCTCTTTTTCCTAAGCTTCCTCATCCTGATTTACCTGAATCCCCCCCTAAAGTTTTTCCACCATTTCCACCAAAGATTTTCCATAAACACCCTCTTTTTCCTCCTGTTCCTATCTACAAGAAACCTCCATTTCCTCATATTCCTATCTACAAACCTCCCTTTCCTCATATTCCCATCTACAAGAAACCTTGCCCTCCACCTGTGCCTATATATGAAAAACCTATCCCTCCTCCTACACCTGTTTATGAGAAACCTCTTCCTCCACCTACACCTGTCTATGAGAAACCTCTTCCTCCGCCTGTGCCTGTTTACCATAAACCTCTCCCTCCACCTACACCTGTGTATGAGAAACCTCTTCCTCCACCTACGCCTGTATATCATAAACCTCTTCCTCCTCCTGTTCCAGTCAAGAAACCATGTCCACCACCAAAGGTTGAACATCCAGTTCCACCACCTGCTCCAGTATACAAACCTCCTCCTGTTCCAAAGCCACAACCACCACCGGTTCCGGTCAAGAAACCATGTCCACCGCCAAAGGTTGAACATCCAGTTTTACCACCCGTTCCAGTATACAAACCTCCTCCGGTTCCAAAGGCACTTCCACCACCAGTTCCAATCAAGAAACCATGTCCACCTAAGATTGAGCACCCAGTTCTACCACCTGTTCCAATATATAAGCCTCCAGTAGTAATTCCAAAGCCACCGGTTGTTCCAATTTACAAACCACCAGTTGTCCTTCCTCCATTCAAGAAACCACCATGTCCACCTCTTCCTCTGCCTCCAAAGAGCTTTTTCCATCACCCCAAGTTTGGAAAATTGCCTCCAAAGAGCTTTTTCCATCACCCTAAGTATGGAAAATGGCCTCCATTGCCTCCAAAGAGCTTCTTCCACCACCCCAAGTATTTTGGAAAATGGCCACCAATCCCTCATAAGAGCTTCTTCCATCACCCAAAGTTTGGAAAGTGGCCACCAATTAATCCAAAAAGCCTCTTCCATCACCCCAAGTTTGGATCATGGCCTCCACTAAGTCCTCATAAT
Protein sequence

>Msa0552920

MQIFTLRQRALLCSWLFVVFLVLGFCYGGDHSTVEVVGLGECADCIQNNIKTSQAFSGLHVTIDCKEANGHFKTRGAGELDKNGNFKVSLPQEIVKEGELKEECYAQLHSATAAPCPAHDGLQNTKIVIKSKSDDKHTLSTAAAGKLKFSSATCTSKFFWPLFKHPLFPKLPHPDLPESPPKVFPPFPPKIFHKHPLFPPVPIYKKPPFPHIPIYKPPFPHIPIYKKPCPPPVPIYEKPIPPPTPVYEKPLPPPTPVYEKPLPPPVPVYHKPLPPPTPVYEKPLPPPTPVYHKPLPPPVPVKKPCPPPKVEHPVPPPAPVYKPPPVPKPQPPPVPVKKPCPPPKVEHPVLPPVPVYKPPPVPKALPPPVPIKKPCPPKIEHPVLPPVPIYKPPVVIPKPPVVPIYKPPVVLPPFKKPPCPPLPLPPKSFFHHPKFGKLPPKSFFHHPKYGKWPPLPPKSFFHHPKYFGKWPPIPHKSFFHHPKFGKWPPINPKSLFHHPKFGSWPPLSPHN