AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462700 MtrunA17_Chr6g0457461 84.181 177 10 1 1 159 1 177 1.43e-107 304
Msa1462700 MtrunA17_Chr6g0457471 82.222 180 11 2 1 159 1 180 9.94e-105 297
Msa1462700 MtrunA17_Chr7g0215381 73.256 172 24 3 9 159 11 181 2.70e-88 255
Msa1462700 MtrunA17_Chr7g0215351 73.837 172 23 3 9 159 11 181 3.11e-88 255
Msa1462700 MtrunA17_Chr7g0215421 73.256 172 24 3 9 159 11 181 5.74e-88 254
Msa1462700 MtrunA17_Chr7g0215361 73.684 171 23 3 10 159 12 181 7.31e-88 254
Msa1462700 MtrunA17_Chr7g0215431 72.515 171 25 3 10 159 12 181 1.25e-86 251
Msa1462700 MtrunA17_Chr4g0072241 45.161 155 66 2 23 158 15 169 4.20e-47 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462700 AT1G67090.1 66.279 172 40 1 6 159 7 178 8.13e-83 242
Msa1462700 AT5G38410.1 65.909 176 41 2 2 159 4 178 9.17e-83 242
Msa1462700 AT5G38430.1 65.909 176 41 2 2 159 4 178 1.30e-82 241
Msa1462700 AT5G38430.2 65.909 176 41 2 2 159 4 178 1.30e-82 241
Msa1462700 AT5G38410.3 64.088 181 41 2 2 159 4 183 5.67e-82 240
Msa1462700 AT5G38420.1 64.773 176 43 2 2 159 4 178 4.43e-81 237
Msa1462700 AT5G38410.2 66.272 169 45 2 2 159 4 171 1.47e-80 236
Msa1462700 AT1G67090.2 67.857 84 27 0 6 89 7 90 9.62e-37 124

Find 77 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAAACTTAGTAGGTTTC+TGG 0.166011 tig0042521:+1394 Msa1462700:intergenic
CTATATATAATAGTGAAATT+TGG 0.219235 tig0042521:+2719 Msa1462700:intergenic
GGATTGGTGGCTGAAAATTT+TGG 0.236681 tig0042521:+2773 Msa1462700:intergenic
AGAAAATTATAGGATAATAA+TGG 0.261019 tig0042521:+1148 Msa1462700:intergenic
ACCCACTATTAGAAAATTAT+AGG 0.271115 tig0042521:+1138 Msa1462700:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.291082 tig0042521:+2520 Msa1462700:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 tig0042521:+1361 Msa1462700:intergenic
CTCTTTGTAGCAATATCATT+TGG 0.320788 tig0042521:+1176 Msa1462700:intergenic
TTGTTGGTCTTCTTGGTGAC+TGG 0.326813 tig0042521:+2527 Msa1462700:intergenic
TTTGGATGTTACTTATCTAA+TGG 0.339223 tig0042521:+2737 Msa1462700:intergenic
AACTCATTCATCAGAATCAT+TGG 0.341056 tig0042521:-1466 Msa1462700:CDS
GATACTATGACGGACGTTAC+TGG 0.345500 tig0042521:-1573 Msa1462700:CDS
GAAAATTATAGGATAATAAT+GGG 0.352354 tig0042521:+1149 Msa1462700:intergenic
ATGATTCTGATGAATGAGTT+TGG 0.359780 tig0042521:+1469 Msa1462700:intergenic
ATATGTATTCGGATTTCCTT+TGG 0.375177 tig0042521:-1251 Msa1462700:three_prime_UTR
TTGTGGATATTACATAATAT+TGG 0.377801 tig0042521:+2813 Msa1462700:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 tig0042521:+2188 Msa1462700:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 tig0042521:-1518 Msa1462700:CDS
TTTCCTTTGGAAATTAAGAA+TGG 0.416082 tig0042521:-1238 Msa1462700:three_prime_UTR
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 tig0042521:-1547 Msa1462700:CDS
ACCCCTCACTGAGGAACAAT+TGG 0.420148 tig0042521:-2147 Msa1462700:CDS
GTGCAAATATCAAACTTAGT+AGG 0.441976 tig0042521:+1387 Msa1462700:intergenic
AACTTGGTTGCTCCGTTCAC+CGG 0.448528 tig0042521:-2572 Msa1462700:CDS
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 tig0042521:+2145 Msa1462700:intergenic
TGTTGGTCTTCTTGGTGACT+GGG 0.456367 tig0042521:+2528 Msa1462700:intergenic
ATGTTACTTATCTAATGGTA+TGG 0.470320 tig0042521:+2742 Msa1462700:intergenic
ACCGGTCTCAAATCCTCAGC+TGG 0.471949 tig0042521:-2554 Msa1462700:CDS
GTTAGCGGAGACGCGGTTAA+CGG 0.473759 tig0042521:+2592 Msa1462700:intergenic
TGATTCTGATGAATGAGTTT+GGG 0.474330 tig0042521:+1470 Msa1462700:intergenic
ACAAACAAAGTAGTAATAAA+GGG 0.474757 tig0042521:+1362 Msa1462700:intergenic
AGAAGCAAAAGTTGAGTACT+TGG 0.476132 tig0042521:-2669 Msa1462700:five_prime_UTR
CGTGAGAACCACCGTTCACC+AGG 0.497088 tig0042521:-1595 Msa1462700:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 tig0042521:+2496 Msa1462700:intergenic
TTGCCATTTGTCTCTTGACT+AGG 0.506082 tig0042521:+1016 Msa1462700:intergenic
AACGGTGGTAACAGCGGCGG+AGG 0.513043 tig0042521:+2610 Msa1462700:intergenic
CATCCATTCTTAATTTCCAA+AGG 0.514176 tig0042521:+1235 Msa1462700:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 tig0042521:+2493 Msa1462700:intergenic
GAGTACTTGGTGAACTAAGA+AGG 0.524666 tig0042521:-2656 Msa1462700:five_prime_UTR
AACTTCTTCTTGCCAACTGG+TGG 0.532490 tig0042521:+2191 Msa1462700:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 tig0042521:+2511 Msa1462700:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 tig0042521:-2141 Msa1462700:CDS
TCTAATGGTATGGAATTGAA+AGG 0.540730 tig0042521:+2752 Msa1462700:intergenic
TGTCTCTTGACTAGGAATTG+TGG 0.547434 tig0042521:+1024 Msa1462700:intergenic
ATTCCTAGTCAAGAGACAAA+TGG 0.548181 tig0042521:-1019 Msa1462700:three_prime_UTR
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 tig0042521:+2144 Msa1462700:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 tig0042521:+1577 Msa1462700:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 tig0042521:+1596 Msa1462700:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 tig0042521:-2497 Msa1462700:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 tig0042521:+2153 Msa1462700:intergenic
ACCAGCTGAGGATTTGAGAC+CGG 0.573385 tig0042521:+2553 Msa1462700:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 tig0042521:+2146 Msa1462700:intergenic
TTGGTGAACTAAGAAGGAAA+AGG 0.579936 tig0042521:-2650 Msa1462700:five_prime_UTR
TGGTATGGAATTGAAAGGAT+TGG 0.588953 tig0042521:+2757 Msa1462700:intergenic
GAGGATTTGAGACCGGTGAA+CGG 0.590974 tig0042521:+2560 Msa1462700:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 tig0042521:+1535 Msa1462700:intergenic
TTATAGGTGTGGCCACCAGT+TGG 0.602882 tig0042521:-2203 Msa1462700:intron
ACCGTTGGATTGTGTAATTG+TGG 0.604311 tig0042521:+2796 Msa1462700:intergenic
GAACGGAGCAACCAAGTTAG+CGG 0.608890 tig0042521:+2577 Msa1462700:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 tig0042521:-2500 Msa1462700:CDS
CAACCAAGTTAGCGGAGACG+CGG 0.626784 tig0042521:+2585 Msa1462700:intergenic
TATGGAATTGAAAGGATTGG+TGG 0.630616 tig0042521:+2760 Msa1462700:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 tig0042521:-2477 Msa1462700:intron
CAACACTTGAGAAGAATCAG+TGG 0.638041 tig0042521:+1522 Msa1462700:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 tig0042521:+1584 Msa1462700:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 tig0042521:+2149 Msa1462700:intergenic
TCCACAATTACACAATCCAA+CGG 0.644234 tig0042521:-2797 Msa1462700:five_prime_UTR
GGGAAATATAGTTCTTACAA+CGG 0.648531 tig0042521:+1333 Msa1462700:intergenic
GGTGACTGGGAAACCAGCTG+AGG 0.655087 tig0042521:+2541 Msa1462700:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 tig0042521:+1587 Msa1462700:intergenic
GCGGTTAACGGTGGTAACAG+CGG 0.666203 tig0042521:+2604 Msa1462700:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 tig0042521:+1365 Msa1462700:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 tig0042521:-1561 Msa1462700:CDS
AGCGGAGACGCGGTTAACGG+TGG 0.674421 tig0042521:+2595 Msa1462700:intergenic
GTTAACGGTGGTAACAGCGG+CGG 0.699396 tig0042521:+2607 Msa1462700:intergenic
CGTTCACCAGGATACTATGA+CGG 0.703631 tig0042521:-1583 Msa1462700:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 tig0042521:-1564 Msa1462700:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 tig0042521:-2156 Msa1462700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATGAAATTAAATTTTATA+TGG + tig0042521:1454-1473 Msa1462700:intergenic 10.0%
!!! ATTTTATGTATGATATTTAT+AGG - tig0042521:1649-1668 Msa1462700:intron 10.0%
!! AATAAATATATACAATAAAG+TGG + tig0042521:1925-1944 Msa1462700:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG + tig0042521:1996-2015 Msa1462700:intergenic 10.0%
!!! TTTTTTGATATTGTTAAATA+TGG - tig0042521:2811-2830 Msa1462700:five_prime_UTR 10.0%
!!! ACATGAAATTAAATTTTATA+TGG + tig0042521:1454-1473 Msa1462700:intergenic 10.0%
!!! ATTTTATGTATGATATTTAT+AGG - tig0042521:1649-1668 Msa1462700:intron 10.0%
!! AATAAATATATACAATAAAG+TGG + tig0042521:1925-1944 Msa1462700:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG + tig0042521:1996-2015 Msa1462700:intergenic 10.0%
!!! TTTTTTGATATTGTTAAATA+TGG - tig0042521:2811-2830 Msa1462700:five_prime_UTR 10.0%
!! CTATATATAATAGTGAAATT+TGG + tig0042521:1152-1171 Msa1462700:intergenic 15.0%
!! ATACATAAAATTGAGTATTA+GGG + tig0042521:1640-1659 Msa1462700:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG + tig0042521:2034-2053 Msa1462700:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG + tig0042521:2558-2577 Msa1462700:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG + tig0042521:2559-2578 Msa1462700:intergenic 15.0%
!! ATATAAACCAAAAATACATT+AGG + tig0042521:2601-2620 Msa1462700:intergenic 15.0%
!!! ATTTTTGGTTTATATGTATT+CGG - tig0042521:2606-2625 Msa1462700:CDS 15.0%
!! GAAAATTATAGGATAATAAT+GGG + tig0042521:2722-2741 Msa1462700:intergenic 15.0%
!! AGAAAATTATAGGATAATAA+TGG + tig0042521:2723-2742 Msa1462700:intergenic 15.0%
!! CTATATATAATAGTGAAATT+TGG + tig0042521:1152-1171 Msa1462700:intergenic 15.0%
!! ATACATAAAATTGAGTATTA+GGG + tig0042521:1640-1659 Msa1462700:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG + tig0042521:2034-2053 Msa1462700:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG + tig0042521:2558-2577 Msa1462700:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG + tig0042521:2559-2578 Msa1462700:intergenic 15.0%
!! ATATAAACCAAAAATACATT+AGG + tig0042521:2601-2620 Msa1462700:intergenic 15.0%
!!! ATTTTTGGTTTATATGTATT+CGG - tig0042521:2606-2625 Msa1462700:CDS 15.0%
!! GAAAATTATAGGATAATAAT+GGG + tig0042521:2722-2741 Msa1462700:intergenic 15.0%
!! AGAAAATTATAGGATAATAA+TGG + tig0042521:2723-2742 Msa1462700:intergenic 15.0%
!! TTGTGGATATTACATAATAT+TGG + tig0042521:1058-1077 Msa1462700:intergenic 20.0%
!! ATATGGTATATGCAAAAATA+TGG + tig0042521:1437-1456 Msa1462700:intergenic 20.0%
!! TTACATATTTATGTACCTTA+AGG - tig0042521:1478-1497 Msa1462700:CDS 20.0%
!! TCATAATTTAAGTAACCTTA+AGG + tig0042521:1496-1515 Msa1462700:intergenic 20.0%
!! ATGTCACAGAAAAATAAAAT+TGG - tig0042521:1536-1555 Msa1462700:CDS 20.0%
!! CATACATAAAATTGAGTATT+AGG + tig0042521:1641-1660 Msa1462700:intergenic 20.0%
!! GTAAGTTAAAAAGGAAAAAA+AGG + tig0042521:1831-1850 Msa1462700:intergenic 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG + tig0042521:1840-1859 Msa1462700:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+TGG - tig0042521:2036-2055 Msa1462700:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG - tig0042521:2240-2259 Msa1462700:intron 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG + tig0042521:2509-2528 Msa1462700:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG + tig0042521:2510-2529 Msa1462700:intergenic 20.0%
!!! ATCCTATAATTTTCTAATAG+TGG - tig0042521:2728-2747 Msa1462700:five_prime_UTR 20.0%
!!! TCCTATAATTTTCTAATAGT+GGG - tig0042521:2729-2748 Msa1462700:five_prime_UTR 20.0%
!! TTGTGGATATTACATAATAT+TGG + tig0042521:1058-1077 Msa1462700:intergenic 20.0%
!! ATATGGTATATGCAAAAATA+TGG + tig0042521:1437-1456 Msa1462700:intergenic 20.0%
!! TTACATATTTATGTACCTTA+AGG - tig0042521:1478-1497 Msa1462700:CDS 20.0%
!! TCATAATTTAAGTAACCTTA+AGG + tig0042521:1496-1515 Msa1462700:intergenic 20.0%
!! ATGTCACAGAAAAATAAAAT+TGG - tig0042521:1536-1555 Msa1462700:CDS 20.0%
!! CATACATAAAATTGAGTATT+AGG + tig0042521:1641-1660 Msa1462700:intergenic 20.0%
!! GTAAGTTAAAAAGGAAAAAA+AGG + tig0042521:1831-1850 Msa1462700:intergenic 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG + tig0042521:1840-1859 Msa1462700:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+TGG - tig0042521:2036-2055 Msa1462700:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG - tig0042521:2240-2259 Msa1462700:intron 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG + tig0042521:2509-2528 Msa1462700:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG + tig0042521:2510-2529 Msa1462700:intergenic 20.0%
!!! ATCCTATAATTTTCTAATAG+TGG - tig0042521:2728-2747 Msa1462700:five_prime_UTR 20.0%
!!! TCCTATAATTTTCTAATAGT+GGG - tig0042521:2729-2748 Msa1462700:five_prime_UTR 20.0%
!!! AAGAGTTTTAGGTTTTGAAA+TGG + tig0042521:1029-1048 Msa0914100:intergenic 25.0%
!! ATGTTACTTATCTAATGGTA+TGG + tig0042521:1129-1148 Msa1462700:intergenic 25.0%
!! TTTGGATGTTACTTATCTAA+TGG + tig0042521:1134-1153 Msa1462700:intergenic 25.0%
!! ATATGCAAAAATATGGACTA+CGG + tig0042521:1430-1449 Msa1462700:intergenic 25.0%
! TTAATTAATTGTGTCAGCTT+TGG + tig0042521:1598-1617 Msa1462700:intergenic 25.0%
! ATGTATGATATTTATAGGTG+TGG - tig0042521:1654-1673 Msa1462700:intron 25.0%
! TTATAGTGTTTAGTGGAATT+TGG - tig0042521:2043-2062 Msa1462700:intron 25.0%
!! AGATCATCCTAATGTATTTT+TGG - tig0042521:2591-2610 Msa1462700:CDS 25.0%
!! TTTCCTTTGGAAATTAAGAA+TGG - tig0042521:2630-2649 Msa1462700:exon 25.0%
! ACCCACTATTAGAAAATTAT+AGG + tig0042521:2733-2752 Msa1462700:intergenic 25.0%
!!! AAGAGTTTTAGGTTTTGAAA+TGG + tig0042521:1029-1048 Msa1462700:intergenic 25.0%
!! ATGTTACTTATCTAATGGTA+TGG + tig0042521:1129-1148 Msa1462700:intergenic 25.0%
!! TTTGGATGTTACTTATCTAA+TGG + tig0042521:1134-1153 Msa1462700:intergenic 25.0%
!! ATATGCAAAAATATGGACTA+CGG + tig0042521:1430-1449 Msa1462700:intergenic 25.0%
! TTAATTAATTGTGTCAGCTT+TGG + tig0042521:1598-1617 Msa1462700:intergenic 25.0%
! ATGTATGATATTTATAGGTG+TGG - tig0042521:1654-1673 Msa1462700:intron 25.0%
! TTATAGTGTTTAGTGGAATT+TGG - tig0042521:2043-2062 Msa1462700:intron 25.0%
!! AGATCATCCTAATGTATTTT+TGG - tig0042521:2591-2610 Msa1462700:CDS 25.0%
!! TTTCCTTTGGAAATTAAGAA+TGG - tig0042521:2630-2649 Msa1462700:exon 25.0%
! ACCCACTATTAGAAAATTAT+AGG + tig0042521:2733-2752 Msa1462700:intergenic 25.0%
! CAAAACCTAAAACTCTTTTG+TGG - tig0042521:1032-1051 Msa1462700:three_prime_UTR 30.0%
TCTAATGGTATGGAATTGAA+AGG + tig0042521:1119-1138 Msa1462700:intergenic 30.0%
CTAAGAAGGAAAAGGAAAAA+TGG - tig0042521:1226-1245 Msa1462700:three_prime_UTR 30.0%
AAAGGAAAAAAAGGTTGCAA+TGG + tig0042521:1822-1841 Msa1462700:intergenic 30.0%
TGATTCTGATGAATGAGTTT+GGG + tig0042521:2401-2420 Msa1462700:intergenic 30.0%
ATGATTCTGATGAATGAGTT+TGG + tig0042521:2402-2421 Msa1462700:intergenic 30.0%
AACTCATTCATCAGAATCAT+TGG - tig0042521:2402-2421 Msa1462700:intron 30.0%
TATCAAACTTAGTAGGTTTC+TGG + tig0042521:2477-2496 Msa1462700:intergenic 30.0%
GTGCAAATATCAAACTTAGT+AGG + tig0042521:2484-2503 Msa1462700:intergenic 30.0%
AACAAAGTAGTAATAAAGGG+TGG + tig0042521:2506-2525 Msa1462700:intergenic 30.0%
GGGAAATATAGTTCTTACAA+CGG + tig0042521:2538-2557 Msa1462700:intergenic 30.0%
ATATGTATTCGGATTTCCTT+TGG - tig0042521:2617-2636 Msa1462700:CDS 30.0%
CATCCATTCTTAATTTCCAA+AGG + tig0042521:2636-2655 Msa1462700:intergenic 30.0%
CTCTTTGTAGCAATATCATT+TGG + tig0042521:2695-2714 Msa1462700:intergenic 30.0%
! CAAAACCTAAAACTCTTTTG+TGG - tig0042521:1032-1051 Msa1462700:three_prime_UTR 30.0%
TCTAATGGTATGGAATTGAA+AGG + tig0042521:1119-1138 Msa1462700:intergenic 30.0%
CTAAGAAGGAAAAGGAAAAA+TGG - tig0042521:1226-1245 Msa1462700:three_prime_UTR 30.0%
AAAGGAAAAAAAGGTTGCAA+TGG + tig0042521:1822-1841 Msa1462700:intergenic 30.0%
TGATTCTGATGAATGAGTTT+GGG + tig0042521:2401-2420 Msa1462700:intergenic 30.0%
ATGATTCTGATGAATGAGTT+TGG + tig0042521:2402-2421 Msa1462700:intergenic 30.0%
AACTCATTCATCAGAATCAT+TGG - tig0042521:2402-2421 Msa1462700:intron 30.0%
TATCAAACTTAGTAGGTTTC+TGG + tig0042521:2477-2496 Msa1462700:intergenic 30.0%
GTGCAAATATCAAACTTAGT+AGG + tig0042521:2484-2503 Msa1462700:intergenic 30.0%
AACAAAGTAGTAATAAAGGG+TGG + tig0042521:2506-2525 Msa1462700:intergenic 30.0%
GGGAAATATAGTTCTTACAA+CGG + tig0042521:2538-2557 Msa1462700:intergenic 30.0%
ATATGTATTCGGATTTCCTT+TGG - tig0042521:2617-2636 Msa1462700:CDS 30.0%
CATCCATTCTTAATTTCCAA+AGG + tig0042521:2636-2655 Msa1462700:intergenic 30.0%
CTCTTTGTAGCAATATCATT+TGG + tig0042521:2695-2714 Msa1462700:intergenic 30.0%
! ATTGGCCACAAAAGAGTTTT+AGG + tig0042521:1040-1059 Msa1462700:intergenic 35.0%
TCCACAATTACACAATCCAA+CGG - tig0042521:1071-1090 Msa1462700:three_prime_UTR 35.0%
TATGGAATTGAAAGGATTGG+TGG + tig0042521:1111-1130 Msa1462700:intergenic 35.0%
TGGTATGGAATTGAAAGGAT+TGG + tig0042521:1114-1133 Msa1462700:intergenic 35.0%
AGAAGCAAAAGTTGAGTACT+TGG - tig0042521:1199-1218 Msa1462700:three_prime_UTR 35.0%
TTGGTGAACTAAGAAGGAAA+AGG - tig0042521:1218-1237 Msa1462700:three_prime_UTR 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG + tig0042521:1351-1370 Msa1462700:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG + tig0042521:1360-1379 Msa1462700:intergenic 35.0%
! AAAAATATGGACTACGGCTT+GGG + tig0042521:1424-1443 Msa1462700:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG - tig0042521:1747-1766 Msa1462700:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG - tig0042521:1751-1770 Msa1462700:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG - tig0042521:1752-1771 Msa1462700:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG + tig0042521:1785-1804 Msa1462700:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG - tig0042521:1784-1803 Msa1462700:intron 35.0%
GCGTCATGATAAAATCTGAT+TGG + tig0042521:1903-1922 Msa1462700:intergenic 35.0%
CAGGTTGTTGGAATTTGATA+TGG - tig0042521:2109-2128 Msa1462700:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG - tig0042521:2350-2369 Msa1462700:intron 35.0%
ATTCCTAGTCAAGAGACAAA+TGG - tig0042521:2849-2868 Msa1462700:five_prime_UTR 35.0%
! ATTGGCCACAAAAGAGTTTT+AGG + tig0042521:1040-1059 Msa1462700:intergenic 35.0%
TCCACAATTACACAATCCAA+CGG - tig0042521:1071-1090 Msa1462700:three_prime_UTR 35.0%
TATGGAATTGAAAGGATTGG+TGG + tig0042521:1111-1130 Msa1462700:intergenic 35.0%
TGGTATGGAATTGAAAGGAT+TGG + tig0042521:1114-1133 Msa1462700:intergenic 35.0%
AGAAGCAAAAGTTGAGTACT+TGG - tig0042521:1199-1218 Msa1462700:three_prime_UTR 35.0%
TTGGTGAACTAAGAAGGAAA+AGG - tig0042521:1218-1237 Msa1462700:three_prime_UTR 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG + tig0042521:1351-1370 Msa1462700:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG + tig0042521:1360-1379 Msa1462700:intergenic 35.0%
! AAAAATATGGACTACGGCTT+GGG + tig0042521:1424-1443 Msa1462700:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG - tig0042521:1747-1766 Msa1462700:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG - tig0042521:1751-1770 Msa1462700:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG - tig0042521:1752-1771 Msa1462700:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG + tig0042521:1785-1804 Msa1462700:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG - tig0042521:1784-1803 Msa1462700:intron 35.0%
GCGTCATGATAAAATCTGAT+TGG + tig0042521:1903-1922 Msa1462700:intergenic 35.0%
CAGGTTGTTGGAATTTGATA+TGG - tig0042521:2109-2128 Msa1462700:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG - tig0042521:2350-2369 Msa1462700:intron 35.0%
ACCGTTGGATTGTGTAATTG+TGG + tig0042521:1075-1094 Msa1462700:intergenic 40.0%
!! GGATTGGTGGCTGAAAATTT+TGG + tig0042521:1098-1117 Msa1462700:intergenic 40.0%
! GAGTACTTGGTGAACTAAGA+AGG - tig0042521:1212-1231 Msa1462700:three_prime_UTR 40.0%
ATTACCTCCATTGCAAGCAA+TGG - tig0042521:1368-1387 Msa1462700:three_prime_UTR 40.0%
! CAAAAATATGGACTACGGCT+TGG + tig0042521:1425-1444 Msa1462700:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG + tig0042521:1683-1702 Msa1462700:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG - tig0042521:1756-1775 Msa1462700:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG - tig0042521:2082-2101 Msa1462700:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG + tig0042521:2180-2199 Msa1462700:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG - tig0042521:2205-2224 Msa1462700:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG - tig0042521:2206-2225 Msa1462700:intron 40.0%
ACCCTACGAAATTCATCACT+CGG + tig0042521:2210-2229 Msa1462700:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG + tig0042521:2349-2368 Msa1462700:intergenic 40.0%
TGTCTCTTGACTAGGAATTG+TGG + tig0042521:2847-2866 Msa1462700:intergenic 40.0%
ACCGTTGGATTGTGTAATTG+TGG + tig0042521:1075-1094 Msa1462700:intergenic 40.0%
!! GGATTGGTGGCTGAAAATTT+TGG + tig0042521:1098-1117 Msa1462700:intergenic 40.0%
! GAGTACTTGGTGAACTAAGA+AGG - tig0042521:1212-1231 Msa1462700:three_prime_UTR 40.0%
ATTACCTCCATTGCAAGCAA+TGG - tig0042521:1368-1387 Msa1462700:three_prime_UTR 40.0%
! CAAAAATATGGACTACGGCT+TGG + tig0042521:1425-1444 Msa1462700:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG + tig0042521:1683-1702 Msa1462700:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG - tig0042521:1756-1775 Msa1462700:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG - tig0042521:2082-2101 Msa1462700:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG + tig0042521:2180-2199 Msa1462700:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG - tig0042521:2205-2224 Msa1462700:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG - tig0042521:2206-2225 Msa1462700:intron 40.0%
ACCCTACGAAATTCATCACT+CGG + tig0042521:2210-2229 Msa1462700:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG + tig0042521:2349-2368 Msa1462700:intergenic 40.0%
TGTCTCTTGACTAGGAATTG+TGG + tig0042521:2847-2866 Msa1462700:intergenic 40.0%
! GGCTGAAAATTTTGGACCGT+TGG + tig0042521:1090-1109 Msa1462700:intergenic 45.0%
!! TGTTGGTCTTCTTGGTGACT+GGG + tig0042521:1343-1362 Msa1462700:intergenic 45.0%
!! TTGTTGGTCTTCTTGGTGAC+TGG + tig0042521:1344-1363 Msa1462700:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG + tig0042521:1378-1397 Msa1462700:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG - tig0042521:1391-1410 Msa1462700:exon 45.0%
AACTTCTTCTTGCCAACTGG+TGG + tig0042521:1680-1699 Msa1462700:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG + tig0042521:1726-1745 Msa1462700:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG + tig0042521:1727-1746 Msa1462700:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG - tig0042521:1727-1746 Msa1462700:intron 45.0%
GAATCCATCCCTTCCTGATA+AGG + tig0042521:1763-1782 Msa1462700:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG - tig0042521:1769-1788 Msa1462700:intron 45.0%
! ATGAGAGGATTATCGACTGC+AGG + tig0042521:2073-2092 Msa1462700:intergenic 45.0%
TCGGCACATCATGTAGTTGT+TGG + tig0042521:2137-2156 Msa1462700:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG + tig0042521:2156-2175 Msa1462700:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG + tig0042521:2197-2216 Msa1462700:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG + tig0042521:2287-2306 Msa1462700:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG - tig0042521:2285-2304 Msa1462700:intron 45.0%
TAACGTCCGTCATAGTATCC+TGG + tig0042521:2294-2313 Msa1462700:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG - tig0042521:2295-2314 Msa1462700:intron 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG - tig0042521:2321-2340 Msa1462700:intron 45.0%
! GGCTGAAAATTTTGGACCGT+TGG + tig0042521:1090-1109 Msa1462700:intergenic 45.0%
!! TGTTGGTCTTCTTGGTGACT+GGG + tig0042521:1343-1362 Msa1462700:intergenic 45.0%
!! TTGTTGGTCTTCTTGGTGAC+TGG + tig0042521:1344-1363 Msa1462700:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG + tig0042521:1378-1397 Msa1462700:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG - tig0042521:1391-1410 Msa1462700:exon 45.0%
AACTTCTTCTTGCCAACTGG+TGG + tig0042521:1680-1699 Msa1462700:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG + tig0042521:1726-1745 Msa1462700:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG + tig0042521:1727-1746 Msa1462700:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG - tig0042521:1727-1746 Msa1462700:intron 45.0%
GAATCCATCCCTTCCTGATA+AGG + tig0042521:1763-1782 Msa1462700:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG - tig0042521:1769-1788 Msa1462700:intron 45.0%
! ATGAGAGGATTATCGACTGC+AGG + tig0042521:2073-2092 Msa1462700:intergenic 45.0%
TCGGCACATCATGTAGTTGT+TGG + tig0042521:2137-2156 Msa1462700:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG + tig0042521:2156-2175 Msa1462700:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG + tig0042521:2197-2216 Msa1462700:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG + tig0042521:2287-2306 Msa1462700:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG - tig0042521:2285-2304 Msa1462700:intron 45.0%
TAACGTCCGTCATAGTATCC+TGG + tig0042521:2294-2313 Msa1462700:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG - tig0042521:2295-2314 Msa1462700:intron 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG - tig0042521:2321-2340 Msa1462700:intron 45.0%
GAACGGAGCAACCAAGTTAG+CGG + tig0042521:1294-1313 Msa1462700:intergenic 50.0%
AACTTGGTTGCTCCGTTCAC+CGG - tig0042521:1296-1315 Msa1462700:three_prime_UTR 50.0%
! GAGGATTTGAGACCGGTGAA+CGG + tig0042521:1311-1330 Msa1462700:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG + tig0042521:1318-1337 Msa1462700:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG - tig0042521:1371-1390 Msa1462700:three_prime_UTR 50.0%
TCCACCATTGCTTGCAATGG+AGG + tig0042521:1375-1394 Msa1462700:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG - tig0042521:1665-1684 Msa1462700:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG + tig0042521:1722-1741 Msa1462700:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG - tig0042521:1721-1740 Msa1462700:intron 50.0%
GCCAATTGTTCCTCAGTGAG+GGG + tig0042521:1725-1744 Msa1462700:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG + tig0042521:2088-2107 Msa1462700:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG - tig0042521:2090-2109 Msa1462700:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG - tig0042521:2097-2116 Msa1462700:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG - tig0042521:2148-2167 Msa1462700:CDS 50.0%
CATAGTATCCTGGTGAACGG+TGG + tig0042521:2284-2303 Msa1462700:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG - tig0042521:2304-2323 Msa1462700:intron 50.0%
GACGTTACTGGACAATGTGG+AGG - tig0042521:2307-2326 Msa1462700:intron 50.0%
GAATCAGTGGCTCCGAACAA+AGG + tig0042521:2336-2355 Msa1462700:intergenic 50.0%
GAACGGAGCAACCAAGTTAG+CGG + tig0042521:1294-1313 Msa1462700:intergenic 50.0%
AACTTGGTTGCTCCGTTCAC+CGG - tig0042521:1296-1315 Msa1462700:three_prime_UTR 50.0%
! GAGGATTTGAGACCGGTGAA+CGG + tig0042521:1311-1330 Msa1462700:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG + tig0042521:1318-1337 Msa1462700:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG - tig0042521:1371-1390 Msa1462700:three_prime_UTR 50.0%
TCCACCATTGCTTGCAATGG+AGG + tig0042521:1375-1394 Msa1462700:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG - tig0042521:1665-1684 Msa1462700:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG + tig0042521:1722-1741 Msa1462700:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG - tig0042521:1721-1740 Msa1462700:intron 50.0%
GCCAATTGTTCCTCAGTGAG+GGG + tig0042521:1725-1744 Msa1462700:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG + tig0042521:2088-2107 Msa1462700:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG - tig0042521:2090-2109 Msa1462700:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG - tig0042521:2097-2116 Msa1462700:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG - tig0042521:2148-2167 Msa1462700:CDS 50.0%
CATAGTATCCTGGTGAACGG+TGG + tig0042521:2284-2303 Msa1462700:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG - tig0042521:2304-2323 Msa1462700:intron 50.0%
GACGTTACTGGACAATGTGG+AGG - tig0042521:2307-2326 Msa1462700:intron 50.0%
GAATCAGTGGCTCCGAACAA+AGG + tig0042521:2336-2355 Msa1462700:intergenic 50.0%
GTTAACGGTGGTAACAGCGG+CGG + tig0042521:1264-1283 Msa1462700:intergenic 55.0%
GCGGTTAACGGTGGTAACAG+CGG + tig0042521:1267-1286 Msa1462700:intergenic 55.0%
GTTAGCGGAGACGCGGTTAA+CGG + tig0042521:1279-1298 Msa1462700:intergenic 55.0%
TAACCGCGTCTCCGCTAACT+TGG - tig0042521:1280-1299 Msa1462700:three_prime_UTR 55.0%
CAACCAAGTTAGCGGAGACG+CGG + tig0042521:1286-1305 Msa1462700:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG - tig0042521:1314-1333 Msa1462700:three_prime_UTR 55.0%
ATACCTTCCACCCCTCACTG+AGG - tig0042521:1712-1731 Msa1462700:intron 55.0%
CTGGTGAACGGTGGTTCTCA+CGG + tig0042521:2275-2294 Msa1462700:intergenic 55.0%
GTTAACGGTGGTAACAGCGG+CGG + tig0042521:1264-1283 Msa1462700:intergenic 55.0%
GCGGTTAACGGTGGTAACAG+CGG + tig0042521:1267-1286 Msa1462700:intergenic 55.0%
GTTAGCGGAGACGCGGTTAA+CGG + tig0042521:1279-1298 Msa1462700:intergenic 55.0%
TAACCGCGTCTCCGCTAACT+TGG - tig0042521:1280-1299 Msa1462700:three_prime_UTR 55.0%
CAACCAAGTTAGCGGAGACG+CGG + tig0042521:1286-1305 Msa1462700:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG - tig0042521:1314-1333 Msa1462700:three_prime_UTR 55.0%
ATACCTTCCACCCCTCACTG+AGG - tig0042521:1712-1731 Msa1462700:intron 55.0%
CTGGTGAACGGTGGTTCTCA+CGG + tig0042521:2275-2294 Msa1462700:intergenic 55.0%
GGTGACTGGGAAACCAGCTG+AGG + tig0042521:1330-1349 Msa1462700:intergenic 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG + tig0042521:1718-1737 Msa1462700:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG - tig0042521:2273-2292 Msa1462700:intron 60.0%
GGTGACTGGGAAACCAGCTG+AGG + tig0042521:1330-1349 Msa1462700:intergenic 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG + tig0042521:1718-1737 Msa1462700:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG - tig0042521:2273-2292 Msa1462700:intron 60.0%
AACGGTGGTAACAGCGGCGG+AGG + tig0042521:1261-1280 Msa1462700:intergenic 65.0%
AGCGGAGACGCGGTTAACGG+TGG + tig0042521:1276-1295 Msa1462700:intergenic 65.0%
AACGGTGGTAACAGCGGCGG+AGG + tig0042521:1261-1280 Msa1462700:intergenic 65.0%
AGCGGAGACGCGGTTAACGG+TGG + tig0042521:1276-1295 Msa1462700:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0042521 gene 1019 2871 1019 ID=Msa1462700;Name=Msa1462700
tig0042521 mRNA 1019 2871 1019 ID=Msa1462700-mRNA-1;Parent=Msa1462700;Name=Msa1462700-mRNA-1;_AED=0.05;_eAED=0.05;_QI=226|0.5|0.66|1|1|1|3|383|159
tig0042521 exon 1019 1632 1019 ID=Msa1462700-mRNA-1:exon:23773;Parent=Msa1462700-mRNA-1
tig0042521 exon 2139 2219 2139 ID=Msa1462700-mRNA-1:exon:23772;Parent=Msa1462700-mRNA-1
tig0042521 exon 2478 2871 2478 ID=Msa1462700-mRNA-1:exon:23771;Parent=Msa1462700-mRNA-1
tig0042521 five_prime_UTR 2646 2871 2646 ID=Msa1462700-mRNA-1:five_prime_utr;Parent=Msa1462700-mRNA-1
tig0042521 CDS 2478 2645 2478 ID=Msa1462700-mRNA-1:cds;Parent=Msa1462700-mRNA-1
tig0042521 CDS 2139 2219 2139 ID=Msa1462700-mRNA-1:cds;Parent=Msa1462700-mRNA-1
tig0042521 CDS 1402 1632 1402 ID=Msa1462700-mRNA-1:cds;Parent=Msa1462700-mRNA-1
tig0042521 three_prime_UTR 1019 1401 1019 ID=Msa1462700-mRNA-1:three_prime_utr;Parent=Msa1462700-mRNA-1
Gene Sequence

>Msa1462700

ATGGCTTTGATCTCCTCCGCCGCTGTTACCACCGTTAACCGCGTCTCCGCTAACTTGGTTGCTCCGTTCACCGGTCTCAAATCCTCAGCTGGTTTCCCAGTCACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAAACTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAGAAACCTACTAA

Protein sequence

>Msa1462700

MALISSAAVTTVNRVSANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPNSFIRIIGFDNVRQVQCISFIAHTPETY*