AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428870 MtrunA17_Chr3g0132361 95.777 521 13 3 1 520 34 546 0.0 1024
Msa0428870 MtrunA17_Chr1g0191801 36.041 394 228 9 124 512 52 426 1.21e-74 243
Msa0428870 MtrunA17_Chr7g0225211 35.374 147 62 5 368 512 182 297 3.36e-15 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428870 AT1G11870.1 72.475 505 132 4 18 519 10 510 0.0 751
Msa0428870 AT1G11870.2 72.475 505 134 4 18 519 10 512 0.0 750
Msa0428870 AT1G11870.6 80.423 378 74 0 142 519 1 378 0.0 641
Msa0428870 AT1G11870.4 69.535 430 124 5 18 442 10 437 0.0 606
Msa0428870 AT1G11870.5 70.379 422 120 4 18 436 10 429 0.0 605
Msa0428870 AT1G11870.3 68.798 391 117 4 18 405 10 398 0.0 542
Msa0428870 AT5G27470.1 36.869 396 230 8 125 512 46 429 2.39e-78 253

Find 138 sgRNAs with CRISPR-Local

Find 575 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCAATTCTGATGCTAATT+TGG 0.142845 3_2:+79909136 Msa0428870:CDS
AAACTCCCTTTGTTTATTAT+TGG 0.144971 3_2:-79915732 None:intergenic
GGAATGAATGGTTGGAATTT+TGG 0.195780 3_2:-79908824 None:intergenic
TGGTAATAATCACTCTCTTC+TGG 0.211142 3_2:-79913148 None:intergenic
TTGAACTGAGTTTGAGAGTT+TGG 0.223344 3_2:-79908753 None:intergenic
CAATTTCTTTAAATTGAAAA+TGG 0.236059 3_2:+79915552 Msa0428870:three_prime_UTR
TTGACAGGAAAACTAAATTT+AGG 0.239752 3_2:-79910243 None:intergenic
ACAGAGGACCGTACAATTTC+AGG 0.244895 3_2:-79912438 None:intergenic
GCCTCAATGGCTCCGGAATA+AGG 0.294083 3_2:-79915409 None:intergenic
TTTCTGCAGAACTTTGGATA+TGG 0.351141 3_2:+79913306 Msa0428870:intron
GACAGTGACCAATGCCTTAT+CGG 0.354411 3_2:+79912737 Msa0428870:CDS
GACCTTGTTCAGTTAGTGTT+TGG 0.373400 3_2:-79909836 None:intergenic
AGAGCCGTCGATTGGGAATC+CGG 0.381628 3_2:+79915231 Msa0428870:CDS
TAGAGATGGCTCTTCTCAAT+TGG 0.383510 3_2:+79912370 Msa0428870:CDS
GATATGGCCTCCGAAGATTT+AGG 0.392610 3_2:+79913322 Msa0428870:CDS
GGTAATAATCACTCTCTTCT+GGG 0.410820 3_2:-79913147 None:intergenic
ACAATTTCAGGTGTTGTTAG+TGG 0.411237 3_2:-79912426 None:intergenic
AGACGGATCTGTCCTTATTC+CGG 0.415683 3_2:+79915397 Msa0428870:CDS
TCCCCTCCTATAGGAGCATC+TGG 0.416543 3_2:-79910056 None:intergenic
CGTACCGAGGCAGGTGCTGC+TGG 0.422945 3_2:+79912854 Msa0428870:CDS
GGGAGGATTCTTCCACAATA+AGG 0.425570 3_2:+79910075 Msa0428870:CDS
TGAGCATTTCTGCAGAACTT+TGG 0.427246 3_2:+79913300 Msa0428870:intron
GGAGCCATTGAGGCCATTCA+TGG 0.427597 3_2:+79915418 Msa0428870:CDS
CATTGTTTCCGTACCGAGGC+AGG 0.428807 3_2:+79912845 Msa0428870:CDS
ACTCATCCAGATGCTCCTAT+AGG 0.434401 3_2:+79910050 Msa0428870:CDS
CCTCCCATGAATGGCCTCAA+TGG 0.436697 3_2:-79915422 None:intergenic
GATCAAGTTCCTTTCCAAGT+TGG 0.436930 3_2:-79910275 None:intergenic
TGGAAATTTGTGGGAATGAA+TGG 0.438553 3_2:-79908836 None:intergenic
GCTTTGGTGAGGCGTGGAAA+TGG 0.439337 3_2:-79908856 None:intergenic
GACTATCAGAGCCGTCGATT+GGG 0.448600 3_2:+79915224 Msa0428870:CDS
GGACAGATCCGTCTTCTTGT+TGG 0.450529 3_2:-79915388 None:intergenic
GAAGAATCCTCCCCTCCTAT+AGG 0.451861 3_2:-79910065 None:intergenic
AAATGAACAAAAGAATGTTA+TGG 0.453776 3_2:-79915482 None:intergenic
GATGTTGAGGCATGGATGCC+TGG 0.456063 3_2:+79913367 Msa0428870:CDS
AGCAGGTGCGCCTAAATCTT+CGG 0.458196 3_2:-79913332 None:intergenic
TGTTTGAACGGTGGCGGAAG+AGG 0.460940 3_2:-79908887 None:intergenic
GTCGGAGATGGTGGTGGTGG+TGG 0.464953 3_2:-79908917 None:intergenic
GAATCTCTGCAGTGCCGATA+AGG 0.466024 3_2:-79912751 None:intergenic
GCATCTGGATGAGTCATGTT+TGG 0.471368 3_2:-79910041 None:intergenic
GAAGGAGGGACTTACTGCTT+TGG 0.472224 3_2:+79909965 Msa0428870:CDS
CAGGAAGTTGAGAGAGTTCG+TGG 0.475368 3_2:+79909759 Msa0428870:intron
TGCAGTGGCTAATAAGATGA+AGG 0.481696 3_2:+79909791 Msa0428870:CDS
GTCAAGGATCATCTCCAACT+TGG 0.483492 3_2:+79910261 Msa0428870:CDS
AGACTATCAGAGCCGTCGAT+TGG 0.484317 3_2:+79915223 Msa0428870:CDS
GTACTTCTGTTGGACGATAC+CGG 0.493596 3_2:-79915250 None:intergenic
TCCAACAGAAGTACTTGTCC+CGG 0.494173 3_2:+79915259 Msa0428870:CDS
GGAAGAGGTGCAGAGAGCTT+TGG 0.494445 3_2:-79908872 None:intergenic
GCACTGCAGAGATTCCTGTT+GGG 0.495625 3_2:+79912759 Msa0428870:CDS
TCTATAGTAGCTTTCCATTG+AGG 0.499766 3_2:-79909062 None:intergenic
GCTTAATGATGAGCTTCAAC+GGG 0.499991 3_2:+79910004 Msa0428870:CDS
ATATCAAGCCCTCCCATGAA+TGG 0.501535 3_2:-79915431 None:intergenic
CACTGCAGAGATTCCTGTTG+GGG 0.506092 3_2:+79912760 Msa0428870:CDS
AGCTTAATGATGAGCTTCAA+CGG 0.513437 3_2:+79910003 Msa0428870:CDS
GTCGTCGGAGATGGTGGTGG+TGG 0.514465 3_2:-79908920 None:intergenic
GAATGCAGGGAAGAATTTGA+AGG 0.514570 3_2:+79909947 Msa0428870:intron
AAATACCGTCTTCCTTATTG+TGG 0.516317 3_2:-79910087 None:intergenic
GGCACTGCAGAGATTCCTGT+TGG 0.518136 3_2:+79912758 Msa0428870:CDS
TATAGACTTCAAGTGGATCA+AGG 0.518299 3_2:+79909079 Msa0428870:CDS
ATGAATGGCCTCAATGGCTC+CGG 0.520657 3_2:-79915416 None:intergenic
TCCTTATTCCGGAGCCATTG+AGG 0.522196 3_2:+79915408 Msa0428870:CDS
GTTAGTGTTTGGCGCTCAGA+TGG 0.524079 3_2:-79909825 None:intergenic
TAAATTGTTTATTCTTCAGA+AGG 0.524440 3_2:+79909181 Msa0428870:CDS
TTATCGTAAATTTGATGTTG+AGG 0.527976 3_2:+79913354 Msa0428870:CDS
GAATACCAATAATAAACAAA+GGG 0.528011 3_2:+79915727 Msa0428870:three_prime_UTR
AGTGCCAGCAGCACCTGCCT+CGG 0.529025 3_2:-79912858 None:intergenic
ATGCCTGGTTTAGAACGGTT+TGG 0.531725 3_2:+79913382 Msa0428870:CDS
CCAAATTAGCATCAGAATTG+CGG 0.533098 3_2:-79909136 None:intergenic
ACATCAAATTTACGATAAGC+AGG 0.533168 3_2:-79913349 None:intergenic
CAGCAGCACCTGCCTCGGTA+CGG 0.543838 3_2:-79912853 None:intergenic
AGTAGACATATAATCATTCG+TGG 0.546412 3_2:-79915356 None:intergenic
TACTGCTTTGGAAGAAGACC+TGG 0.548466 3_2:+79909977 Msa0428870:CDS
AGTTGGAGATGATCCTTGAC+AGG 0.549831 3_2:-79910258 None:intergenic
TTGGTCGTCGGAGATGGTGG+TGG 0.551860 3_2:-79908923 None:intergenic
GAAGACATGTTCTCATCCCT+AGG 0.552439 3_2:+79913193 Msa0428870:CDS
CCCGGGACAAGTACTTCTGT+TGG 0.553956 3_2:-79915260 None:intergenic
ATGTAGGTGGAAAACCTCAA+TGG 0.554153 3_2:+79909048 Msa0428870:intron
TAACAACACCTGAAATTGTA+CGG 0.556606 3_2:+79912430 Msa0428870:CDS
CATCCAGATGCTCCTATAGG+AGG 0.557360 3_2:+79910053 Msa0428870:CDS
ATGACCTTGGTCGTCGGAGA+TGG 0.558941 3_2:-79908929 None:intergenic
CTGCAGTGCCGATAAGGCAT+TGG 0.560075 3_2:-79912745 None:intergenic
ATCCAGATGCTCCTATAGGA+GGG 0.560485 3_2:+79910054 Msa0428870:CDS
CATGGATGCCTGGTTTAGAA+CGG 0.561477 3_2:+79913377 Msa0428870:CDS
CGGAGATGTTTGAACGGTGG+CGG 0.565451 3_2:-79908893 None:intergenic
CGCCAAACACTAACTGAACA+AGG 0.566436 3_2:+79909834 Msa0428870:CDS
TCACCAAACCGTTCTAAACC+AGG 0.571662 3_2:-79913385 None:intergenic
ATGTCTCTCGCCGGTACTAG+TGG 0.572272 3_2:-79908697 None:intergenic
TCATTTGAAGGATGCTGTTG+CGG 0.576286 3_2:+79915499 Msa0428870:three_prime_UTR
TGAAGCAGTTCTATTAGAGA+TGG 0.577703 3_2:+79912356 Msa0428870:CDS
CTCACTTGAAATGTAACCCT+AGG 0.578253 3_2:-79913210 None:intergenic
ACTAGTACCGGCGAGAGACA+TGG 0.578734 3_2:+79908699 Msa0428870:exon
CATTGAGGCCATTCATGGGA+GGG 0.579345 3_2:+79915423 Msa0428870:CDS
TTCTCATTGTTTCCGTACCG+AGG 0.579716 3_2:+79912841 Msa0428870:CDS
TGAATACCAATAATAAACAA+AGG 0.580111 3_2:+79915726 Msa0428870:three_prime_UTR
GCAGGGAAGAATTTGAAGGA+GGG 0.582239 3_2:+79909951 Msa0428870:intron
GGATCATCTCCAACTTGGAA+AGG 0.583822 3_2:+79910266 Msa0428870:CDS
ACCTTGGTCGTCGGAGATGG+TGG 0.584603 3_2:-79908926 None:intergenic
ACAAAATAATCTTATATCAG+AGG 0.586392 3_2:+79915593 Msa0428870:three_prime_UTR
AATTTGTGGGAATGAATGGT+TGG 0.587606 3_2:-79908832 None:intergenic
CAGAGAGCTTTGGTGAGGCG+TGG 0.588470 3_2:-79908862 None:intergenic
TGGTTTAGAACGGTTTGGTG+AGG 0.589958 3_2:+79913387 Msa0428870:CDS
AAGCTACTATAGACTTCAAG+TGG 0.591029 3_2:+79909072 Msa0428870:CDS
GAGCCATTGAGGCCATTCAT+GGG 0.591133 3_2:+79915419 Msa0428870:CDS
TCCAGATGCTCCTATAGGAG+GGG 0.593632 3_2:+79910055 Msa0428870:CDS
GTGCTGCTGGCACTGCAACA+AGG 0.594968 3_2:+79912867 Msa0428870:CDS
GCGTGGAAATGGAAATTTGT+GGG 0.595192 3_2:-79908845 None:intergenic
GCAGTGGCTAATAAGATGAA+GGG 0.596858 3_2:+79909792 Msa0428870:CDS
GTAAATTTGATGTTGAGGCA+TGG 0.597186 3_2:+79913359 Msa0428870:CDS
GAGAATTACCAACAAGAAGA+CGG 0.597615 3_2:+79915380 Msa0428870:CDS
CTCTCAGAAGTGATGAAGAG+AGG 0.598060 3_2:+79912396 Msa0428870:CDS
ACTGAGTTTGAGAGTTTGGA+AGG 0.605983 3_2:-79908749 None:intergenic
TGCAGGGAAGAATTTGAAGG+AGG 0.611002 3_2:+79909950 Msa0428870:intron
TTCTTCCACAATAAGGAAGA+CGG 0.614769 3_2:+79910082 Msa0428870:CDS
GAAATGATGACCTTGGTCGT+CGG 0.618529 3_2:-79908935 None:intergenic
AGATGCTCCTATAGGAGGGG+AGG 0.621334 3_2:+79910058 Msa0428870:CDS
TGTGAATCCATGTCTCTCGC+CGG 0.622505 3_2:-79908706 None:intergenic
AAGACATGTTCTCATCCCTA+GGG 0.626721 3_2:+79913194 Msa0428870:CDS
CCAACAGAAGTACTTGTCCC+GGG 0.629573 3_2:+79915260 Msa0428870:CDS
CCATTGAGGCCATTCATGGG+AGG 0.629690 3_2:+79915422 Msa0428870:CDS
GAAGCGCGAAGAGGAACATG+TGG 0.632159 3_2:-79908779 None:intergenic
TCACTTGAAATGTAACCCTA+GGG 0.633087 3_2:-79913209 None:intergenic
CACGCTGCTTCACAGGTCAG+TGG 0.633207 3_2:+79912309 Msa0428870:intron
AGGTGCAGAGAGCTTTGGTG+AGG 0.634680 3_2:-79908867 None:intergenic
GCTCATCATTAAGCTTCACC+AGG 0.637240 3_2:-79909995 None:intergenic
GGTGGTCGGAGATGTTTGAA+CGG 0.642336 3_2:-79908899 None:intergenic
TAATGATGAGCTTCAACGGG+AGG 0.643259 3_2:+79910007 Msa0428870:CDS
AGGAGAAAGGAAGCGCGAAG+AGG 0.655253 3_2:-79908788 None:intergenic
ACTGCAGAGATTCCTGTTGG+GGG 0.671727 3_2:+79912761 Msa0428870:CDS
GCTGTTGCGGCATTAGATTG+TGG 0.675226 3_2:+79915512 Msa0428870:three_prime_UTR
GGTCGGAGATGTTTGAACGG+TGG 0.675520 3_2:-79908896 None:intergenic
TCGTGGAGAGAGAAATGCAG+TGG 0.678883 3_2:+79909776 Msa0428870:CDS
AACGTGTGAACAAACTGTGG+CGG 0.686971 3_2:-79915311 None:intergenic
AAGCGCGAAGAGGAACATGT+GGG 0.696487 3_2:-79908778 None:intergenic
GGCGTGGAAATGGAAATTTG+TGG 0.705957 3_2:-79908846 None:intergenic
AGGTGCGCCTAAATCTTCGG+AGG 0.706651 3_2:-79913329 None:intergenic
ACCACCATCTCCGACGACCA+AGG 0.708473 3_2:+79908925 Msa0428870:CDS
GATACCGGATTCCCAATCGA+CGG 0.717257 3_2:-79915235 None:intergenic
AATAATCACTCTCTTCTGGG+CGG 0.726189 3_2:-79913144 None:intergenic
TTTAACGTGTGAACAAACTG+TGG 0.755868 3_2:-79915314 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTATTTAAATTAGTTA+GGG - chr3_2:79911980-79911999 None:intergenic 10.0%
!!! TTTTTAGGTTAAAAATTAAA+AGG + chr3_2:79910829-79910848 Msa0428870:intron 10.0%
!!! TTTTGTATTTAAATTAGTTA+GGG + chr3_2:79911980-79911999 Msa0428870:intron 10.0%
!! AATAATGTAATGTTATATTA+TGG + chr3_2:79913771-79913790 Msa0428870:intron 10.0%
!! ATTAAAAAAAAAAAAATGAC+CGG - chr3_2:79914096-79914115 None:intergenic 10.0%
!!! AAAAAAAAAATCAAATCTTT+TGG - chr3_2:79914279-79914298 None:intergenic 10.0%
!!! TTGATTAATAATTTTTCTAA+AGG - chr3_2:79914324-79914343 None:intergenic 10.0%
!!! TTACTTTAATTTCATTGTTA+AGG - chr3_2:79909000-79909019 None:intergenic 15.0%
!! AAAAAAAAAAACGTTGTTAT+TGG + chr3_2:79909019-79909038 Msa0428870:intron 15.0%
!!! GAAAGTTCAAATTTTTATTT+AGG + chr3_2:79909302-79909321 Msa0428870:intron 15.0%
!!! TTAAAAGAACAAAGATATTT+TGG - chr3_2:79909709-79909728 None:intergenic 15.0%
!!! AAATATCTTTGTTCTTTTAA+TGG + chr3_2:79909709-79909728 Msa0428870:intron 15.0%
!!! AAGTATTAATGATGTATTTT+GGG + chr3_2:79910199-79910218 Msa0428870:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG - chr3_2:79911981-79912000 None:intergenic 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG - chr3_2:79911979-79911998 None:intergenic 15.0%
!!! TATTTTTTTAAAATTCATGC+AGG + chr3_2:79910691-79910710 Msa0428870:intron 15.0%
!! AAGAAATTAACATAATTTGA+TGG + chr3_2:79911198-79911217 Msa0428870:intron 15.0%
!!! GTTTTGTATTTAAATTAGTT+AGG + chr3_2:79911979-79911998 Msa0428870:intron 15.0%
!! TTTGTATTTAAATTAGTTAG+GGG + chr3_2:79911981-79912000 Msa0428870:intron 15.0%
!! AATTAAGCCTATTATTATAT+AGG + chr3_2:79912046-79912065 Msa0428870:intron 15.0%
!! ATTTAATTATGAAAAGTTGA+AGG - chr3_2:79912136-79912155 None:intergenic 15.0%
!! AATCATTACAATAAAAAACA+AGG - chr3_2:79912237-79912256 None:intergenic 15.0%
!!! TTTTTAATGCAATTAGTAAT+TGG + chr3_2:79913446-79913465 Msa0428870:intron 15.0%
!! ATATTATGGAAAAACTTAAA+AGG + chr3_2:79913785-79913804 Msa0428870:intron 15.0%
!!! TTAAAAGGTTTTGAATTAAA+AGG + chr3_2:79913800-79913819 Msa0428870:intron 15.0%
!!! TAAAAGGTTTTGAATTAAAA+GGG + chr3_2:79913801-79913820 Msa0428870:intron 15.0%
!!! ATATTTTAGTGATAACAAAT+CGG + chr3_2:79914005-79914024 Msa0428870:intron 15.0%
!!! CATTTTGTTCATAAAATAAA+AGG + chr3_2:79914435-79914454 Msa0428870:intron 15.0%
!! CAATTTCTTTAAATTGAAAA+TGG + chr3_2:79915552-79915571 Msa0428870:three_prime_UTR 15.0%
!!! TAAGACATTTGATTTTAAAA+AGG - chr3_2:79915645-79915664 None:intergenic 15.0%
!! TAAATTGTTTATTCTTCAGA+AGG + chr3_2:79909181-79909200 Msa0428870:CDS 20.0%
!! TCATTTAAATTAAAAGGGAA+TGG - chr3_2:79909235-79909254 None:intergenic 20.0%
!! GCAAGTCATTTAAATTAAAA+GGG - chr3_2:79909240-79909259 None:intergenic 20.0%
!!! CAAGTATTAATGATGTATTT+TGG + chr3_2:79910198-79910217 Msa0428870:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG - chr3_2:79911982-79912001 None:intergenic 20.0%
!! AAAATAAAATAATATCCACG+TGG - chr3_2:79911859-79911878 None:intergenic 20.0%
!! AGGTTAAAAATTAAAAGGAA+TGG + chr3_2:79910834-79910853 Msa0428870:intron 20.0%
!! AAATTAAAAGGAATGGAAAA+AGG + chr3_2:79910841-79910860 Msa0428870:intron 20.0%
!!! ATTTCAATGTTTGATTTTCT+GGG - chr3_2:79911075-79911094 None:intergenic 20.0%
!!! TTTGGGTTAATATTTTTAGT+TGG + chr3_2:79911166-79911185 Msa0428870:intron 20.0%
!!! TTGGGTTAATATTTTTAGTT+GGG + chr3_2:79911167-79911186 Msa0428870:intron 20.0%
!!! AATTAACATAATTTGATGGT+TGG + chr3_2:79911202-79911221 Msa0428870:intron 20.0%
!!! ATTAACATAATTTGATGGTT+GGG + chr3_2:79911203-79911222 Msa0428870:intron 20.0%
!! AAAATAAAATAATATCCACG+TGG + chr3_2:79911859-79911878 Msa0428870:intron 20.0%
!! TTGTATTTAAATTAGTTAGG+GGG + chr3_2:79911982-79912001 Msa0428870:intron 20.0%
!! TGTGTTTCCTATATAATAAT+AGG - chr3_2:79912056-79912075 None:intergenic 20.0%
!!! TATTTTTAGGGAAAATCTAA+TGG - chr3_2:79912628-79912647 None:intergenic 20.0%
!!! ATAAAGCAGAAGTATTTTTA+GGG - chr3_2:79912640-79912659 None:intergenic 20.0%
!! ATTTGACCACATATTTATAT+TGG + chr3_2:79912937-79912956 Msa0428870:intron 20.0%
!!! AAAAGGTTTTGAATTAAAAG+GGG + chr3_2:79913802-79913821 Msa0428870:intron 20.0%
!!! ATATTTTTCGCTAATCAATT+TGG + chr3_2:79913920-79913939 Msa0428870:intron 20.0%
!!! TATTTTAGTGATAACAAATC+GGG + chr3_2:79914006-79914025 Msa0428870:intron 20.0%
!!! ATCAAATCTTTTGGAATTTT+CGG - chr3_2:79914270-79914289 None:intergenic 20.0%
!! CATAAAATAAAAGGTTTCAA+TGG + chr3_2:79914444-79914463 Msa0428870:intron 20.0%
!! AAATCAAATTATTGAACAAC+AGG + chr3_2:79914478-79914497 Msa0428870:intron 20.0%
!!! ATGTAAAAGTACTAATTTAG+AGG - chr3_2:79914880-79914899 None:intergenic 20.0%
!! AAATGAACAAAAGAATGTTA+TGG - chr3_2:79915485-79915504 None:intergenic 20.0%
!! ACAAAATAATCTTATATCAG+AGG + chr3_2:79915593-79915612 Msa0428870:three_prime_UTR 20.0%
!! TGAATACCAATAATAAACAA+AGG + chr3_2:79915726-79915745 Msa0428870:three_prime_UTR 20.0%
!! GAATACCAATAATAAACAAA+GGG + chr3_2:79915727-79915746 Msa0428870:three_prime_UTR 20.0%
!! TTGTTATTGGTGATTTATGT+AGG + chr3_2:79909032-79909051 Msa0428870:intron 25.0%
! CGCAAGTCATTTAAATTAAA+AGG - chr3_2:79909241-79909260 None:intergenic 25.0%
!! TTAAGTTGTTTATCCAAGTA+GGG - chr3_2:79909328-79909347 None:intergenic 25.0%
!! ATTAAGTTGTTTATCCAAGT+AGG - chr3_2:79909329-79909348 None:intergenic 25.0%
!! AATAAGTTGAAAGTAGCTTA+TGG + chr3_2:79909562-79909581 Msa0428870:intron 25.0%
! AAACAAATGGTTATAAATCG+TGG - chr3_2:79909872-79909891 None:intergenic 25.0%
! AAGAAAGAAATGAATGGAAT+TGG - chr3_2:79910123-79910142 None:intergenic 25.0%
! TTGACAGGAAAACTAAATTT+AGG - chr3_2:79910246-79910265 None:intergenic 25.0%
!!! TAAATTTAGTTTTCCTGTCA+AGG + chr3_2:79910245-79910264 Msa0428870:CDS 25.0%
! CTATTTACAGTGTAAATTTG+AGG + chr3_2:79910374-79910393 Msa0428870:intron 25.0%
! TCCAGAATTATTCAATTTCA+AGG + chr3_2:79910784-79910803 Msa0428870:intron 25.0%
! TCCTTGAAATTGAATAATTC+TGG - chr3_2:79910788-79910807 None:intergenic 25.0%
! AACCTAAAAATCATCCTTAA+AGG - chr3_2:79910819-79910838 None:intergenic 25.0%
!!! ATAGGGTTTTAGTTTAACAA+AGG - chr3_2:79910962-79910981 None:intergenic 25.0%
!!! CATTTCAATGTTTGATTTTC+TGG - chr3_2:79911076-79911095 None:intergenic 25.0%
!! TTAACATAATTTGATGGTTG+GGG + chr3_2:79911204-79911223 Msa0428870:intron 25.0%
!!! GTATTTGGTTTTTGAGTATA+TGG - chr3_2:79911287-79911306 None:intergenic 25.0%
!! TATCTTAAGTGTTAACTTGA+TGG + chr3_2:79912202-79912221 Msa0428870:intron 25.0%
! GTAATGATTATGTTGAAGTT+TGG + chr3_2:79912248-79912267 Msa0428870:intron 25.0%
! TATTTCTTAGCCAATGTAAA+TGG + chr3_2:79912517-79912536 Msa0428870:intron 25.0%
! CATTGTGAGAAAGAAATAAA+TGG - chr3_2:79912550-79912569 None:intergenic 25.0%
! ATTTCTTTCTCACAATGTAA+TGG + chr3_2:79912553-79912572 Msa0428870:intron 25.0%
! ATGTAATGGTAATCATAATG+AGG + chr3_2:79912567-79912586 Msa0428870:intron 25.0%
!!! CATAAAGCAGAAGTATTTTT+AGG - chr3_2:79912641-79912660 None:intergenic 25.0%
!! ATACTTCTGCTTTATGTTTT+TGG + chr3_2:79912645-79912664 Msa0428870:intron 25.0%
!!! GAAAATGCGACATATTTTAA+GGG - chr3_2:79912824-79912843 None:intergenic 25.0%
!! AGAAAATGCGACATATTTTA+AGG - chr3_2:79912825-79912844 None:intergenic 25.0%
! TTACTGCCAATATAAATATG+TGG - chr3_2:79912946-79912965 None:intergenic 25.0%
!! TTGACTGATTATGTACATTT+TGG - chr3_2:79912981-79913000 None:intergenic 25.0%
! AAACATGAACATTGATATGT+AGG - chr3_2:79913026-79913045 None:intergenic 25.0%
!! ACATTTCAATTTTGCTGAAT+TGG - chr3_2:79913114-79913133 None:intergenic 25.0%
!!! CAATTTTAATAAGTTCTTCG+TGG - chr3_2:79913171-79913190 None:intergenic 25.0%
! TCATGTTATAGAATGAAGAA+AGG - chr3_2:79913254-79913273 None:intergenic 25.0%
! TTATCGTAAATTTGATGTTG+AGG + chr3_2:79913354-79913373 Msa0428870:CDS 25.0%
! AGCTATGTTAAATTCTTTGT+GGG + chr3_2:79913707-79913726 Msa0428870:intron 25.0%
! AGAGAATCATGTTTAACAAA+AGG - chr3_2:79914134-79914153 None:intergenic 25.0%
! TCGAATAGAATTACGTTAAT+AGG + chr3_2:79914578-79914597 Msa0428870:intron 25.0%
!!! AATACTTTTTTGCCCAAATT+AGG + chr3_2:79914728-79914747 Msa0428870:intron 25.0%
! AATATGCACCTCAAATTAAA+GGG - chr3_2:79914796-79914815 None:intergenic 25.0%
! TAATATGCACCTCAAATTAA+AGG - chr3_2:79914797-79914816 None:intergenic 25.0%
!!! TTTAATTTGAGGTGCATATT+AGG + chr3_2:79914796-79914815 Msa0428870:intron 25.0%
!! TTAATTTGAGGTGCATATTA+GGG + chr3_2:79914797-79914816 Msa0428870:intron 25.0%
!! CGGATTAAAAGTAGTTATTT+TGG - chr3_2:79914851-79914870 None:intergenic 25.0%
!!! AGATTGCCTTTAGATTTTTT+TGG - chr3_2:79915287-79915306 None:intergenic 25.0%
!! ACATTCTTTTGTTCATTTGA+AGG + chr3_2:79915487-79915506 Msa0428870:three_prime_UTR 25.0%
!! AAACTCCCTTTGTTTATTAT+TGG - chr3_2:79915735-79915754 None:intergenic 25.0%
AACAGAGAATTAAGAGAAGA+AGG - chr3_2:79908960-79908979 None:intergenic 30.0%
! TTATTGGTGATTTATGTAGG+TGG + chr3_2:79909035-79909054 Msa0428870:intron 30.0%
!! ATTTTTATTTAGGCCCTACT+TGG + chr3_2:79909312-79909331 Msa0428870:intron 30.0%
ATTAAGCGCACTTATTACAT+TGG - chr3_2:79909403-79909422 None:intergenic 30.0%
!! GTTGTTTTCATAAGTTATCC+AGG + chr3_2:79909527-79909546 Msa0428870:intron 30.0%
AAGTTATCCAGGAAAAATCA+TGG + chr3_2:79909538-79909557 Msa0428870:intron 30.0%
! CTTATTTCCATGATTTTTCC+TGG - chr3_2:79909548-79909567 None:intergenic 30.0%
! ATTTGTTTCTTACAGATAGC+AGG + chr3_2:79909740-79909759 Msa0428870:intron 30.0%
TCAGAGAAGAAAGAAATGAA+TGG - chr3_2:79910129-79910148 None:intergenic 30.0%
!!! GATGTATTTTGGGATTTTGT+AGG + chr3_2:79910209-79910228 Msa0428870:intron 30.0%
!!! TATTTTGGGATTTTGTAGGT+TGG + chr3_2:79910213-79910232 Msa0428870:intron 30.0%
ACCTGGTACTCTTATTATTA+TGG + chr3_2:79910473-79910492 Msa0428870:intron 30.0%
! TTATGGCTTAATTGCACTTT+TGG + chr3_2:79910490-79910509 Msa0428870:intron 30.0%
TGCCAAAGAATCAATACTTA+GGG - chr3_2:79911952-79911971 None:intergenic 30.0%
!!! TATTGATTCTTTGGCAGTTT+TGG + chr3_2:79910581-79910600 Msa0428870:intron 30.0%
!! AGCCTTTAAGGATGATTTTT+AGG + chr3_2:79910814-79910833 Msa0428870:intron 30.0%
AAAGGAATGGAAAAAGGAAT+AGG + chr3_2:79910847-79910866 Msa0428870:intron 30.0%
ATAGGAATTGATGAATTTCC+TGG - chr3_2:79910927-79910946 None:intergenic 30.0%
AAGAGAATAAGGGTAAGATA+GGG - chr3_2:79910979-79910998 None:intergenic 30.0%
!!! GAACAATTCATGGGTTTTTT+GGG + chr3_2:79911149-79911168 Msa0428870:intron 30.0%
! TAACATAATTTGATGGTTGG+GGG + chr3_2:79911205-79911224 Msa0428870:intron 30.0%
CTGATCTTAAGAACTTCATT+CGG - chr3_2:79911261-79911280 None:intergenic 30.0%
! TGTATTTGTTTGTTGGTGTT+AGG - chr3_2:79911357-79911376 None:intergenic 30.0%
ACTGTGTTGTATTTGTTTGT+TGG - chr3_2:79911364-79911383 None:intergenic 30.0%
!! TTGCATCGATTGAGAAAATT+AGG + chr3_2:79911458-79911477 Msa0428870:intron 30.0%
!! TGCATCGATTGAGAAAATTA+GGG + chr3_2:79911459-79911478 Msa0428870:intron 30.0%
GATTGAGAAAATTAGGGTTA+GGG + chr3_2:79911465-79911484 Msa0428870:intron 30.0%
AAGAAATGAAGATGAAGTGA+AGG + chr3_2:79911515-79911534 Msa0428870:intron 30.0%
!!! GCTTGCTGATATTTTGAAAT+TGG - chr3_2:79911825-79911844 None:intergenic 30.0%
!!! TATTGATTCTTTGGCAGTTT+TGG - chr3_2:79910581-79910600 None:intergenic 30.0%
TGCCAAAGAATCAATACTTA+AGG + chr3_2:79911952-79911971 Msa0428870:intron 30.0%
GCCAAAGAATCAATACTTAA+GGG + chr3_2:79911953-79911972 Msa0428870:intron 30.0%
CCAAAGAATCAATACTTAAG+GGG + chr3_2:79911954-79911973 Msa0428870:intron 30.0%
! AATAGGCTTAATTGCACTTT+TGG - chr3_2:79912039-79912058 None:intergenic 30.0%
GTTCTTGTGTATGATATTGT+TGG + chr3_2:79912172-79912191 Msa0428870:intron 30.0%
!! ATAGAACTGCTTCATTTTTC+AGG - chr3_2:79912350-79912369 None:intergenic 30.0%
TAACAACACCTGAAATTGTA+CGG + chr3_2:79912430-79912449 Msa0428870:CDS 30.0%
AAATACACAAACACAAACCT+GGG - chr3_2:79912502-79912521 None:intergenic 30.0%
GAATAAACCTGTTTGATGTT+GGG - chr3_2:79912710-79912729 None:intergenic 30.0%
AGAATAAACCTGTTTGATGT+TGG - chr3_2:79912711-79912730 None:intergenic 30.0%
!! TATTGATTGATAATGAGCAG+AGG + chr3_2:79913073-79913092 Msa0428870:intron 30.0%
! TTTCAATTTTGCTGAATTGG+TGG - chr3_2:79913111-79913130 None:intergenic 30.0%
ACATCAAATTTACGATAAGC+AGG - chr3_2:79913352-79913371 None:intergenic 30.0%
TCCAACATTCTTAGTTTAGT+GGG - chr3_2:79913492-79913511 None:intergenic 30.0%
!!! TGGGTAATGAGTTTTAGTTA+AGG + chr3_2:79913518-79913537 Msa0428870:intron 30.0%
TAGTTAAGGTAGAATCAATC+AGG + chr3_2:79913532-79913551 Msa0428870:intron 30.0%
GAGCTATGTTAAATTCTTTG+TGG + chr3_2:79913706-79913725 Msa0428870:intron 30.0%
ACACATCTTCAAAACATAGT+GGG - chr3_2:79913741-79913760 None:intergenic 30.0%
AACACATCTTCAAAACATAG+TGG - chr3_2:79913742-79913761 None:intergenic 30.0%
TAATATGCACCCTCTTAAAA+AGG + chr3_2:79914035-79914054 Msa0428870:intron 30.0%
!! ATGTTTGGACCTTTTTAAGA+GGG - chr3_2:79914047-79914066 None:intergenic 30.0%
AAAATTGAATGGTCCATGTT+TGG - chr3_2:79914062-79914081 None:intergenic 30.0%
CTACTGTGTGTAAAATTGAA+TGG - chr3_2:79914073-79914092 None:intergenic 30.0%
! ATATTGAAACTGGCTCTTTA+AGG - chr3_2:79914395-79914414 None:intergenic 30.0%
AAGAGCCAGTTTCAATATAT+TGG + chr3_2:79914397-79914416 Msa0428870:intron 30.0%
AGAGCCAGTTTCAATATATT+GGG + chr3_2:79914398-79914417 Msa0428870:intron 30.0%
TCAACCCAATATATTGAAAC+TGG - chr3_2:79914405-79914424 None:intergenic 30.0%
AACGTAATTCTATTCGATTG+TGG - chr3_2:79914575-79914594 None:intergenic 30.0%
ATCAGAAACAAAATCGTTCT+TGG - chr3_2:79914604-79914623 None:intergenic 30.0%
! TAATTTGAGGTGCATATTAG+GGG + chr3_2:79914798-79914817 Msa0428870:intron 30.0%
!! TCTAAACGTGTGATTTGTTA+GGG - chr3_2:79914826-79914845 None:intergenic 30.0%
TACTAATTTAGAGGTCGATA+CGG - chr3_2:79914871-79914890 None:intergenic 30.0%
! TCTACTCTAATTTTGTAGCA+GGG - chr3_2:79914927-79914946 None:intergenic 30.0%
! TTCTACTCTAATTTTGTAGC+AGG - chr3_2:79914928-79914947 None:intergenic 30.0%
CCTCTTCATGTTTGATATAA+CGG + chr3_2:79915174-79915193 Msa0428870:intron 30.0%
AGTAGACATATAATCATTCG+TGG - chr3_2:79915359-79915378 None:intergenic 30.0%
TTGAACTGAGTTTGAGAGTT+TGG - chr3_2:79908756-79908775 None:intergenic 35.0%
!!! ATTTTGGTTTTGTGAAGTGG+AGG - chr3_2:79908811-79908830 None:intergenic 35.0%
!!! GGAATTTTGGTTTTGTGAAG+TGG - chr3_2:79908814-79908833 None:intergenic 35.0%
! GGAATGAATGGTTGGAATTT+TGG - chr3_2:79908827-79908846 None:intergenic 35.0%
AATTTGTGGGAATGAATGGT+TGG - chr3_2:79908835-79908854 None:intergenic 35.0%
TGGAAATTTGTGGGAATGAA+TGG - chr3_2:79908839-79908858 None:intergenic 35.0%
TCTATAGTAGCTTTCCATTG+AGG - chr3_2:79909065-79909084 None:intergenic 35.0%
AAGCTACTATAGACTTCAAG+TGG + chr3_2:79909072-79909091 Msa0428870:CDS 35.0%
TATAGACTTCAAGTGGATCA+AGG + chr3_2:79909079-79909098 Msa0428870:CDS 35.0%
CCAAATTAGCATCAGAATTG+CGG - chr3_2:79909139-79909158 None:intergenic 35.0%
TTGGCGGTTGATTACATTTA+GGG - chr3_2:79909654-79909673 None:intergenic 35.0%
ATTGGCGGTTGATTACATTT+AGG - chr3_2:79909655-79909674 None:intergenic 35.0%
ACTACCATCAAGCATTTGAT+TGG - chr3_2:79909673-79909692 None:intergenic 35.0%
CGCAAACACAAACAAACAAA+TGG - chr3_2:79909885-79909904 None:intergenic 35.0%
AACCGTTACATTATGAATGC+AGG + chr3_2:79909933-79909952 Msa0428870:intron 35.0%
ACCGTTACATTATGAATGCA+GGG + chr3_2:79909934-79909953 Msa0428870:intron 35.0%
TCCCTGCATTCATAATGTAA+CGG - chr3_2:79909938-79909957 None:intergenic 35.0%
AGCTTAATGATGAGCTTCAA+CGG + chr3_2:79910003-79910022 Msa0428870:CDS 35.0%
TTCTTCCACAATAAGGAAGA+CGG + chr3_2:79910082-79910101 Msa0428870:CDS 35.0%
AAATACCGTCTTCCTTATTG+TGG - chr3_2:79910090-79910109 None:intergenic 35.0%
TCTTTCTTCTCTGAGTGAAA+AGG + chr3_2:79910135-79910154 Msa0428870:intron 35.0%
!! AGCATCGTTTTTCCAAAGTA+TGG + chr3_2:79910351-79910370 Msa0428870:intron 35.0%
CACTGTAAATAGCCATACTT+TGG - chr3_2:79910366-79910385 None:intergenic 35.0%
! ACAGTGTAAATTTGAGGTGT+AGG + chr3_2:79910380-79910399 Msa0428870:intron 35.0%
GGTGTAGGTTAATGACATAT+TGG + chr3_2:79910395-79910414 Msa0428870:intron 35.0%
GTTAATGACATATTGGCAAC+AGG + chr3_2:79910402-79910421 Msa0428870:intron 35.0%
TCTCTTGGAATTTACTTACC+TGG + chr3_2:79910456-79910475 Msa0428870:intron 35.0%
!! GCCATAATAATAAGAGTACC+AGG - chr3_2:79910477-79910496 None:intergenic 35.0%
ATTTAAATTAGTTAGGGGGC+CGG - chr3_2:79911986-79912005 None:intergenic 35.0%
CCAAAGAATCAATACTTAGG+GGG - chr3_2:79910575-79910594 None:intergenic 35.0%
GCCAAAGAATCAATACTTAG+GGG - chr3_2:79910576-79910595 None:intergenic 35.0%
CTGCCAAAGAATCAATACTT+AGG - chr3_2:79911951-79911970 None:intergenic 35.0%
CAAGGATGATTAAGCCTTTA+AGG + chr3_2:79910802-79910821 Msa0428870:intron 35.0%
CAAAGGATGAAAAGAGAGAT+AGG - chr3_2:79910945-79910964 None:intergenic 35.0%
GAAGAGAATAAGGGTAAGAT+AGG - chr3_2:79910980-79910999 None:intergenic 35.0%
TGTCTTGTGTAAATAAACGC+TGG + chr3_2:79911094-79911113 Msa0428870:intron 35.0%
GTCTTGTGTAAATAAACGCT+GGG + chr3_2:79911095-79911114 Msa0428870:intron 35.0%
TTCCTGTTCGAACAATTCAT+GGG + chr3_2:79911140-79911159 Msa0428870:intron 35.0%
!!! CGAACAATTCATGGGTTTTT+TGG + chr3_2:79911148-79911167 Msa0428870:intron 35.0%
AGGGAAAACTGTGTTGTATT+TGG - chr3_2:79911302-79911321 None:intergenic 35.0%
AACAATCGCAGTAGTGTTAT+CGG - chr3_2:79911419-79911438 None:intergenic 35.0%
TTTCTCAATCGATGCAATCA+TGG - chr3_2:79911455-79911474 None:intergenic 35.0%
CGATTGAGAAAATTAGGGTT+AGG + chr3_2:79911464-79911483 Msa0428870:intron 35.0%
GTTAGGGTTTGATCTGAAAA+GGG + chr3_2:79911481-79911500 Msa0428870:intron 35.0%
TTAGGGTTTGATCTGAAAAG+GGG + chr3_2:79911482-79911501 Msa0428870:intron 35.0%
AATGAAGATGAAGTGAAGGT+CGG + chr3_2:79911519-79911538 Msa0428870:intron 35.0%
AAGTCTTTGATGGAGTTTGT+TGG + chr3_2:79911584-79911603 Msa0428870:intron 35.0%
ATGCGATTGAGTTTGATAAG+CGG + chr3_2:79911687-79911706 Msa0428870:intron 35.0%
AAAAGGGGTTTGATCTGAAA+AGG + chr3_2:79911747-79911766 Msa0428870:intron 35.0%
AAAGGGGTTTGATCTGAAAA+GGG + chr3_2:79911748-79911767 Msa0428870:intron 35.0%
!! CCCCTTAAGTATTGATTCTT+TGG - chr3_2:79911957-79911976 None:intergenic 35.0%
ATCATACACAAGAACAGTCA+TGG - chr3_2:79912167-79912186 None:intergenic 35.0%
TGAAGCAGTTCTATTAGAGA+TGG + chr3_2:79912356-79912375 Msa0428870:CDS 35.0%
!! ACAATTTCAGGTGTTGTTAG+TGG - chr3_2:79912429-79912448 None:intergenic 35.0%
TCCTCTGTTGTTGAAAAATG+TGG + chr3_2:79912453-79912472 Msa0428870:CDS 35.0%
CCTCTGTTGTTGAAAAATGT+GGG + chr3_2:79912454-79912473 Msa0428870:CDS 35.0%
GAAATACACAAACACAAACC+TGG - chr3_2:79912503-79912522 None:intergenic 35.0%
CAAATCAATACCTAGGAACA+TGG - chr3_2:79912922-79912941 None:intergenic 35.0%
ATGTGGTCAAATCAATACCT+AGG - chr3_2:79912929-79912948 None:intergenic 35.0%
!! CTGATTATGTACATTTTGGC+TGG - chr3_2:79912977-79912996 None:intergenic 35.0%
GGTAATAATCACTCTCTTCT+GGG - chr3_2:79913150-79913169 None:intergenic 35.0%
TGGTAATAATCACTCTCTTC+TGG - chr3_2:79913151-79913170 None:intergenic 35.0%
TCACTTGAAATGTAACCCTA+GGG - chr3_2:79913212-79913231 None:intergenic 35.0%
GTTATATTAGACGCAGCAAT+GGG - chr3_2:79913278-79913297 None:intergenic 35.0%
AGTTATATTAGACGCAGCAA+TGG - chr3_2:79913279-79913298 None:intergenic 35.0%
TTTCTGCAGAACTTTGGATA+TGG + chr3_2:79913306-79913325 Msa0428870:intron 35.0%
GTAAATTTGATGTTGAGGCA+TGG + chr3_2:79913359-79913378 Msa0428870:CDS 35.0%
GGTCAGTATTTAATTCCCTT+TGG + chr3_2:79913408-79913427 Msa0428870:intron 35.0%
AGAGATAATGTCAGACCAAA+GGG - chr3_2:79913426-79913445 None:intergenic 35.0%
AAGAGATAATGTCAGACCAA+AGG - chr3_2:79913427-79913446 None:intergenic 35.0%
CCAACATTCTTAGTTTAGTG+GGG - chr3_2:79913491-79913510 None:intergenic 35.0%
GTCCAACATTCTTAGTTTAG+TGG - chr3_2:79913493-79913512 None:intergenic 35.0%
GTCAAACTTTAATTACCTCC+CGG + chr3_2:79913592-79913611 Msa0428870:intron 35.0%
! TTGATAATCCACAATTCGAC+CGG - chr3_2:79913614-79913633 None:intergenic 35.0%
ACATCTTCAAAACATAGTGG+GGG - chr3_2:79913739-79913758 None:intergenic 35.0%
CACATCTTCAAAACATAGTG+GGG - chr3_2:79913740-79913759 None:intergenic 35.0%
! TTAAGAGGGTGCATATTAGA+GGG - chr3_2:79914033-79914052 None:intergenic 35.0%
! TTTAAGAGGGTGCATATTAG+AGG - chr3_2:79914034-79914053 None:intergenic 35.0%
!! CATGTTTGGACCTTTTTAAG+AGG - chr3_2:79914048-79914067 None:intergenic 35.0%
CTCTTAAAAAGGTCCAAACA+TGG + chr3_2:79914046-79914065 Msa0428870:intron 35.0%
! TCAATTTTACACACAGTAGC+CGG + chr3_2:79914074-79914093 Msa0428870:intron 35.0%
!! CTCTTTAAGGTCAACACTAA+TGG - chr3_2:79914382-79914401 None:intergenic 35.0%
! ATTCGATTGTGGTCAGTTTT+AGG - chr3_2:79914564-79914583 None:intergenic 35.0%
TTCTGATTACCCAAGAAAAG+AGG + chr3_2:79914617-79914636 Msa0428870:intron 35.0%
TCTGATTACCCAAGAAAAGA+GGG + chr3_2:79914618-79914637 Msa0428870:intron 35.0%
! CCATTTATCCCTCTTTTCTT+GGG - chr3_2:79914629-79914648 None:intergenic 35.0%
! TCCATTTATCCCTCTTTTCT+TGG - chr3_2:79914630-79914649 None:intergenic 35.0%
AGGGATAAATGGAAGTGAAA+AGG + chr3_2:79914637-79914656 Msa0428870:intron 35.0%
GGGATAAATGGAAGTGAAAA+GGG + chr3_2:79914638-79914657 Msa0428870:intron 35.0%
TGGAAGTGAAAAGGGATAAA+TGG + chr3_2:79914646-79914665 Msa0428870:intron 35.0%
TGAGTGTTTGAAGAAGATGA+AGG + chr3_2:79914703-79914722 Msa0428870:intron 35.0%
!! CTCTAAACGTGTGATTTGTT+AGG - chr3_2:79914827-79914846 None:intergenic 35.0%
CATCATCTCATGAAAAACTG+TGG + chr3_2:79915121-79915140 Msa0428870:intron 35.0%
CCGTTATATCAAACATGAAG+AGG - chr3_2:79915177-79915196 None:intergenic 35.0%
!!! CTTTAGATTTTTTTGGACCC+GGG - chr3_2:79915280-79915299 None:intergenic 35.0%
!!! CCTTTAGATTTTTTTGGACC+CGG - chr3_2:79915281-79915300 None:intergenic 35.0%
TTTAACGTGTGAACAAACTG+TGG - chr3_2:79915317-79915336 None:intergenic 35.0%
GAGAATTACCAACAAGAAGA+CGG + chr3_2:79915380-79915399 Msa0428870:CDS 35.0%
ACTGAGTTTGAGAGTTTGGA+AGG - chr3_2:79908752-79908771 None:intergenic 40.0%
! TTTTGTGAAGTGGAGGAGAA+AGG - chr3_2:79908804-79908823 None:intergenic 40.0%
GCGTGGAAATGGAAATTTGT+GGG - chr3_2:79908848-79908867 None:intergenic 40.0%
GAAGAAGGAAATGATGACCT+TGG - chr3_2:79908945-79908964 None:intergenic 40.0%
ATGTAGGTGGAAAACCTCAA+TGG + chr3_2:79909048-79909067 Msa0428870:intron 40.0%
CCGCAATTCTGATGCTAATT+TGG + chr3_2:79909136-79909155 Msa0428870:CDS 40.0%
GTCTACTTGTGAGACTGTTT+GGG - chr3_2:79909604-79909623 None:intergenic 40.0%
TGTCTACTTGTGAGACTGTT+TGG - chr3_2:79909605-79909624 None:intergenic 40.0%
ACCATCAAGCATTTGATTGG+CGG - chr3_2:79909670-79909689 None:intergenic 40.0%
TGCAGTGGCTAATAAGATGA+AGG + chr3_2:79909791-79909810 Msa0428870:CDS 40.0%
GCAGTGGCTAATAAGATGAA+GGG + chr3_2:79909792-79909811 Msa0428870:CDS 40.0%
GACCTTGTTCAGTTAGTGTT+TGG - chr3_2:79909839-79909858 None:intergenic 40.0%
GAATGCAGGGAAGAATTTGA+AGG + chr3_2:79909947-79909966 Msa0428870:intron 40.0%
GCTTAATGATGAGCTTCAAC+GGG + chr3_2:79910004-79910023 Msa0428870:CDS 40.0%
TGAGTGAAAAGGTTGCATGT+TGG + chr3_2:79910146-79910165 Msa0428870:intron 40.0%
GATCAAGTTCCTTTCCAAGT+TGG - chr3_2:79910278-79910297 None:intergenic 40.0%
GACATATTGGCAACAGGTAA+AGG + chr3_2:79910408-79910427 Msa0428870:intron 40.0%
CATTGTCAATGTGACTCTCT+TGG + chr3_2:79910441-79910460 Msa0428870:intron 40.0%
!! ACCGCAACTTTTGGAAAGAT+GGG - chr3_2:79912010-79912029 None:intergenic 40.0%
!! AACCGCAACTTTTGGAAAGA+TGG - chr3_2:79912009-79912028 None:intergenic 40.0%
!! CCCCCTAAGTATTGATTCTT+TGG + chr3_2:79910572-79910591 Msa0428870:intron 40.0%
AGCAAAGACCAGGTCAAAAA+TGG - chr3_2:79911913-79911932 None:intergenic 40.0%
GAAGGGTTGGAAGAGAATAA+GGG - chr3_2:79910989-79911008 None:intergenic 40.0%
AGAAGGGTTGGAAGAGAATA+AGG - chr3_2:79910990-79911009 None:intergenic 40.0%
GGCATGAAGATGTGAAAGAA+GGG - chr3_2:79911027-79911046 None:intergenic 40.0%
ATCTTCATGCCCAAATCTTG+CGG + chr3_2:79911036-79911055 Msa0428870:intron 40.0%
! TTTTCTCTGCCGCAAGATTT+GGG - chr3_2:79911048-79911067 None:intergenic 40.0%
! TTTTTCTCTGCCGCAAGATT+TGG - chr3_2:79911049-79911068 None:intergenic 40.0%
TGTTCGAACAGGAACATCAA+TGG - chr3_2:79911134-79911153 None:intergenic 40.0%
GTTCCTGTTCGAACAATTCA+TGG + chr3_2:79911139-79911158 Msa0428870:intron 40.0%
AACCCATGAATTGTTCGAAC+AGG - chr3_2:79911145-79911164 None:intergenic 40.0%
! TTCGGAGTTTTCGTCAAACT+GGG - chr3_2:79911243-79911262 None:intergenic 40.0%
! ATTCGGAGTTTTCGTCAAAC+TGG - chr3_2:79911244-79911263 None:intergenic 40.0%
AACAAGGACAGAACAAGGAA+GGG - chr3_2:79911321-79911340 None:intergenic 40.0%
AAACAAGGACAGAACAAGGA+AGG - chr3_2:79911322-79911341 None:intergenic 40.0%
TGTGAAACAAGGACAGAACA+AGG - chr3_2:79911326-79911345 None:intergenic 40.0%
AGGTTGTTGGATGTGAAACA+AGG - chr3_2:79911337-79911356 None:intergenic 40.0%
!! GTTTGTTGGTGTTAGGTTGT+TGG - chr3_2:79911350-79911369 None:intergenic 40.0%
AAGCATTCGAGAACAAGGAA+GGG - chr3_2:79911390-79911409 None:intergenic 40.0%
GGTTAGGGTTTGATCTGAAA+AGG + chr3_2:79911480-79911499 Msa0428870:intron 40.0%
! TGAAGGTGGTGATTCTGAAA+AGG + chr3_2:79911730-79911749 Msa0428870:intron 40.0%
! GAAGGTGGTGATTCTGAAAA+GGG + chr3_2:79911731-79911750 Msa0428870:intron 40.0%
! AAGGTGGTGATTCTGAAAAG+GGG + chr3_2:79911732-79911751 Msa0428870:intron 40.0%
!! AAAAGGGTGTTGCTTTGCAA+GGG + chr3_2:79911764-79911783 Msa0428870:intron 40.0%
AGCAAAGACCAGGTCAAAAA+TGG + chr3_2:79911913-79911932 Msa0428870:intron 40.0%
CTTTCCAAAAGTTGCGGTTA+CGG - chr3_2:79912008-79912027 None:intergenic 40.0%
!! ACCGCAACTTTTGGAAAGAT+AGG + chr3_2:79912010-79912029 Msa0428870:intron 40.0%
CCCTATCTTTCCAAAAGTTG+CGG - chr3_2:79912014-79912033 None:intergenic 40.0%
!! CCGCAACTTTTGGAAAGATA+GGG + chr3_2:79912011-79912030 Msa0428870:intron 40.0%
!! CGCAACTTTTGGAAAGATAG+GGG + chr3_2:79912012-79912031 Msa0428870:intron 40.0%
!! GCAACTTTTGGAAAGATAGG+GGG + chr3_2:79912013-79912032 Msa0428870:intron 40.0%
AGGAAACACAGTAGTGTCTT+AGG + chr3_2:79912066-79912085 Msa0428870:intron 40.0%
TAGAGATGGCTCTTCTCAAT+TGG + chr3_2:79912370-79912389 Msa0428870:CDS 40.0%
!! CCCACATTTTTCAACAACAG+AGG - chr3_2:79912457-79912476 None:intergenic 40.0%
TGGCTAACAGCCATTTACAT+TGG - chr3_2:79912530-79912549 None:intergenic 40.0%
! ATCTTTTGCACCATGAAGCA+AGG - chr3_2:79912598-79912617 None:intergenic 40.0%
GTTTCATCCCAACATCAAAC+AGG + chr3_2:79912700-79912719 Msa0428870:intron 40.0%
! CTTTTTCCTACCATGTTCCT+AGG + chr3_2:79912909-79912928 Msa0428870:intron 40.0%
TCAATACCTAGGAACATGGT+AGG - chr3_2:79912918-79912937 None:intergenic 40.0%
AATAATCACTCTCTTCTGGG+CGG - chr3_2:79913147-79913166 None:intergenic 40.0%
AAGACATGTTCTCATCCCTA+GGG + chr3_2:79913194-79913213 Msa0428870:CDS 40.0%
CTCACTTGAAATGTAACCCT+AGG - chr3_2:79913213-79913232 None:intergenic 40.0%
TGAGCATTTCTGCAGAACTT+TGG + chr3_2:79913300-79913319 Msa0428870:intron 40.0%
CCCCACTAAACTAAGAATGT+TGG + chr3_2:79913488-79913507 Msa0428870:intron 40.0%
TAAGAATGTTGGACTCGTGT+GGG + chr3_2:79913499-79913518 Msa0428870:intron 40.0%
ACCAAGAACTGTTTCAGTCA+GGG - chr3_2:79913574-79913593 None:intergenic 40.0%
TGATAATCCACAATTCGACC+GGG - chr3_2:79913613-79913632 None:intergenic 40.0%
AGCAAGGAATGATGACATTG+AGG - chr3_2:79914191-79914210 None:intergenic 40.0%
TTGTTCATAGAGAGAGAGCA+AGG - chr3_2:79914207-79914226 None:intergenic 40.0%
ATTGAGAACCTATATGGCTG+GGG - chr3_2:79914245-79914264 None:intergenic 40.0%
CATTGAGAACCTATATGGCT+GGG - chr3_2:79914246-79914265 None:intergenic 40.0%
TCATTGAGAACCTATATGGC+TGG - chr3_2:79914247-79914266 None:intergenic 40.0%
TCGGTCATTGAGAACCTATA+TGG - chr3_2:79914251-79914270 None:intergenic 40.0%
!!! TGGTCAGTTTTAGGAGCAAA+AGG - chr3_2:79914555-79914574 None:intergenic 40.0%
CCCAAGAAAAGAGGGATAAA+TGG + chr3_2:79914626-79914645 Msa0428870:intron 40.0%
! TTTTGCCCAAATTAGGTGAC+TGG + chr3_2:79914735-79914754 Msa0428870:intron 40.0%
ACCAACCAGTCACCTAATTT+GGG - chr3_2:79914743-79914762 None:intergenic 40.0%
CCTCAAATTAAAGGGACCAT+GGG - chr3_2:79914788-79914807 None:intergenic 40.0%
ACCTCAAATTAAAGGGACCA+TGG - chr3_2:79914789-79914808 None:intergenic 40.0%
! AGCCAGAAATTTTGAGCAGT+GGG - chr3_2:79915051-79915070 None:intergenic 40.0%
CCGGGTCCAAAAAAATCTAA+AGG + chr3_2:79915278-79915297 Msa0428870:CDS 40.0%
TCATTTGAAGGATGCTGTTG+CGG + chr3_2:79915499-79915518 Msa0428870:three_prime_UTR 40.0%
GGCGTGGAAATGGAAATTTG+TGG - chr3_2:79908849-79908868 None:intergenic 45.0%
GAAATGATGACCTTGGTCGT+CGG - chr3_2:79908938-79908957 None:intergenic 45.0%
ACCGCCAATCAAATGCTTGA+TGG + chr3_2:79909666-79909685 Msa0428870:intron 45.0%
CGCCAAACACTAACTGAACA+AGG + chr3_2:79909834-79909853 Msa0428870:CDS 45.0%
TGCAGGGAAGAATTTGAAGG+AGG + chr3_2:79909950-79909969 Msa0428870:intron 45.0%
GCAGGGAAGAATTTGAAGGA+GGG + chr3_2:79909951-79909970 Msa0428870:intron 45.0%
!! TACTGCTTTGGAAGAAGACC+TGG + chr3_2:79909977-79909996 Msa0428870:CDS 45.0%
GCTCATCATTAAGCTTCACC+AGG - chr3_2:79909998-79910017 None:intergenic 45.0%
TAATGATGAGCTTCAACGGG+AGG + chr3_2:79910007-79910026 Msa0428870:CDS 45.0%
GCATCTGGATGAGTCATGTT+TGG - chr3_2:79910044-79910063 None:intergenic 45.0%
ACTCATCCAGATGCTCCTAT+AGG + chr3_2:79910050-79910069 Msa0428870:CDS 45.0%
ATCCAGATGCTCCTATAGGA+GGG + chr3_2:79910054-79910073 Msa0428870:CDS 45.0%
GGGAGGATTCTTCCACAATA+AGG + chr3_2:79910075-79910094 Msa0428870:CDS 45.0%
AGTTGGAGATGATCCTTGAC+AGG - chr3_2:79910261-79910280 None:intergenic 45.0%
GTCAAGGATCATCTCCAACT+TGG + chr3_2:79910261-79910280 Msa0428870:CDS 45.0%
GGATCATCTCCAACTTGGAA+AGG + chr3_2:79910266-79910285 Msa0428870:CDS 45.0%
!! TGATTTTGATGCTGCTGCAG+AGG + chr3_2:79910302-79910321 Msa0428870:CDS 45.0%
!! GCAACTTTTGGAAAGATGGG+GGG - chr3_2:79910516-79910535 None:intergenic 45.0%
!! CGCAACTTTTGGAAAGATGG+GGG - chr3_2:79910517-79910536 None:intergenic 45.0%
!! CCGCAACTTTTGGAAAGATG+GGG - chr3_2:79910518-79910537 None:intergenic 45.0%
CCCCATCTTTCCAAAAGTTG+CGG + chr3_2:79910515-79910534 Msa0428870:intron 45.0%
CTTTCCAAAAGTTGCGGTTC+CGG + chr3_2:79910521-79910540 Msa0428870:intron 45.0%
ACCAGGTCAAAAATGGACCA+GGG - chr3_2:79911920-79911939 None:intergenic 45.0%
ATCTTCATGATGCATCAGCC+AGG + chr3_2:79910906-79910925 Msa0428870:intron 45.0%
TGAAAGAAGGGTTGAGAGAC+GGG - chr3_2:79911015-79911034 None:intergenic 45.0%
GTGAAAGAAGGGTTGAGAGA+CGG - chr3_2:79911016-79911035 None:intergenic 45.0%
GGGCATGAAGATGTGAAAGA+AGG - chr3_2:79911028-79911047 None:intergenic 45.0%
! CATAATTTGATGGTTGGGGG+TGG + chr3_2:79911208-79911227 Msa0428870:intron 45.0%
! GAAGCATTCGAGAACAAGGA+AGG - chr3_2:79911391-79911410 None:intergenic 45.0%
!! GAAGGAAGCATTCGAGAACA+AGG - chr3_2:79911395-79911414 None:intergenic 45.0%
CACTACTGCGATTGTTTCAG+CGG + chr3_2:79911423-79911442 Msa0428870:intron 45.0%
ACTACTGCGATTGTTTCAGC+GGG + chr3_2:79911424-79911443 Msa0428870:intron 45.0%
TGCTAGAGCGAAGTCTTTGA+TGG + chr3_2:79911574-79911593 Msa0428870:intron 45.0%
!! TGATGGAGTTTGTTGGTGTG+AGG + chr3_2:79911591-79911610 Msa0428870:intron 45.0%
AGGTTCGAGAAATGCTGTGA+CGG + chr3_2:79911616-79911635 Msa0428870:intron 45.0%
CGATTGAGTTTGATAAGCGG+AGG + chr3_2:79911690-79911709 Msa0428870:intron 45.0%
AGAGTTGCTTGGAGAGTTGA+AGG + chr3_2:79911713-79911732 Msa0428870:intron 45.0%
!! GAAAAGGGTGTTGCTTTGCA+AGG + chr3_2:79911763-79911782 Msa0428870:intron 45.0%
ACCAGGTCAAAAATGGACCA+GGG + chr3_2:79911920-79911939 Msa0428870:intron 45.0%
CTCTCAGAAGTGATGAAGAG+AGG + chr3_2:79912396-79912415 Msa0428870:CDS 45.0%
ACAGAGGACCGTACAATTTC+AGG - chr3_2:79912441-79912460 None:intergenic 45.0%
TTGCACCATGAAGCAAGGTT+GGG - chr3_2:79912593-79912612 None:intergenic 45.0%
TTTGCACCATGAAGCAAGGT+TGG - chr3_2:79912594-79912613 None:intergenic 45.0%
GACAGTGACCAATGCCTTAT+CGG + chr3_2:79912737-79912756 Msa0428870:CDS 45.0%
TTCTCATTGTTTCCGTACCG+AGG + chr3_2:79912841-79912860 Msa0428870:CDS 45.0%
GTAGGATGAGACTTGAGAGT+AGG - chr3_2:79913008-79913027 None:intergenic 45.0%
GAAGACATGTTCTCATCCCT+AGG + chr3_2:79913193-79913212 Msa0428870:CDS 45.0%
GATATGGCCTCCGAAGATTT+AGG + chr3_2:79913322-79913341 Msa0428870:CDS 45.0%
CATGGATGCCTGGTTTAGAA+CGG + chr3_2:79913377-79913396 Msa0428870:CDS 45.0%
! ATGCCTGGTTTAGAACGGTT+TGG + chr3_2:79913382-79913401 Msa0428870:CDS 45.0%
! TCACCAAACCGTTCTAAACC+AGG - chr3_2:79913388-79913407 None:intergenic 45.0%
!! TGGTTTAGAACGGTTTGGTG+AGG + chr3_2:79913387-79913406 Msa0428870:CDS 45.0%
CTAAGAATGTTGGACTCGTG+TGG + chr3_2:79913498-79913517 Msa0428870:intron 45.0%
ACCCTGACTGAAACAGTTCT+TGG + chr3_2:79913570-79913589 Msa0428870:intron 45.0%
GACCAAGAACTGTTTCAGTC+AGG - chr3_2:79913575-79913594 None:intergenic 45.0%
TTATCAAGACCTCCTTCCGT+TGG + chr3_2:79913627-79913646 Msa0428870:intron 45.0%
TATCAAGACCTCCTTCCGTT+GGG + chr3_2:79913628-79913647 Msa0428870:intron 45.0%
TTGAGAACCTATATGGCTGG+GGG - chr3_2:79914244-79914263 None:intergenic 45.0%
TTATTGAACAACAGGCCGAG+TGG + chr3_2:79914486-79914505 Msa0428870:intron 45.0%
TATTGAACAACAGGCCGAGT+GGG + chr3_2:79914487-79914506 Msa0428870:intron 45.0%
TTACTCTTCTCAGTCCCACT+CGG - chr3_2:79914504-79914523 None:intergenic 45.0%
AAGGGATAAATGGCAGTCGA+AGG + chr3_2:79914656-79914675 Msa0428870:intron 45.0%
TAAATGGCAGTCGAAGGAGA+TGG + chr3_2:79914662-79914681 Msa0428870:intron 45.0%
CACCAACCAGTCACCTAATT+TGG - chr3_2:79914744-79914763 None:intergenic 45.0%
GGTGAACCTTGACAAATGAC+CGG - chr3_2:79914767-79914786 None:intergenic 45.0%
CATTTGTCAAGGTTCACCCA+TGG + chr3_2:79914769-79914788 Msa0428870:intron 45.0%
!! CCCATGGTCCCTTTAATTTG+AGG + chr3_2:79914785-79914804 Msa0428870:intron 45.0%
! CCAGAAATTTTGAGCAGTGG+GGG - chr3_2:79915049-79915068 None:intergenic 45.0%
! GCCAGAAATTTTGAGCAGTG+GGG - chr3_2:79915050-79915069 None:intergenic 45.0%
! GAGCCAGAAATTTTGAGCAG+TGG - chr3_2:79915052-79915071 None:intergenic 45.0%
GTACTTCTGTTGGACGATAC+CGG - chr3_2:79915253-79915272 None:intergenic 45.0%
!! TCCAACAGAAGTACTTGTCC+CGG + chr3_2:79915259-79915278 Msa0428870:CDS 45.0%
AACGTGTGAACAAACTGTGG+CGG - chr3_2:79915314-79915333 None:intergenic 45.0%
AGACGGATCTGTCCTTATTC+CGG + chr3_2:79915397-79915416 Msa0428870:CDS 45.0%
ATATCAAGCCCTCCCATGAA+TGG - chr3_2:79915434-79915453 None:intergenic 45.0%
!!! TTTTTTTAATTTTAATAGAA+TGG - chr3_2:79913835-79913854 None:intergenic 5.0%
TGTGAATCCATGTCTCTCGC+CGG - chr3_2:79908709-79908728 None:intergenic 50.0%
AAGCGCGAAGAGGAACATGT+GGG - chr3_2:79908781-79908800 None:intergenic 50.0%
GGTGGTCGGAGATGTTTGAA+CGG - chr3_2:79908902-79908921 None:intergenic 50.0%
CAGGAAGTTGAGAGAGTTCG+TGG + chr3_2:79909759-79909778 Msa0428870:intron 50.0%
TCGTGGAGAGAGAAATGCAG+TGG + chr3_2:79909776-79909795 Msa0428870:CDS 50.0%
GTTAGTGTTTGGCGCTCAGA+TGG - chr3_2:79909828-79909847 None:intergenic 50.0%
GAAGGAGGGACTTACTGCTT+TGG + chr3_2:79909965-79909984 Msa0428870:CDS 50.0%
CATCCAGATGCTCCTATAGG+AGG + chr3_2:79910053-79910072 Msa0428870:CDS 50.0%
TCCAGATGCTCCTATAGGAG+GGG + chr3_2:79910055-79910074 Msa0428870:CDS 50.0%
GAAGAATCCTCCCCTCCTAT+AGG - chr3_2:79910068-79910087 None:intergenic 50.0%
!! GTTGCATGTTGGTCTTGCTC+AGG + chr3_2:79910157-79910176 Msa0428870:intron 50.0%
CAGGTCAAAAATGGACCAGG+GGG - chr3_2:79911922-79911941 None:intergenic 50.0%
CCAGGTCAAAAATGGACCAG+GGG - chr3_2:79911921-79911940 None:intergenic 50.0%
GACCAGGTCAAAAATGGACC+AGG - chr3_2:79911919-79911938 None:intergenic 50.0%
GAACCCACACCCCTTATGTT+TGG + chr3_2:79910642-79910661 Msa0428870:intron 50.0%
! GCACCAAACATAAGGGGTGT+GGG - chr3_2:79911881-79911900 None:intergenic 50.0%
CACGTGGCACCAAACATAAG+GGG - chr3_2:79911875-79911894 None:intergenic 50.0%
CCACGTGGCACCAAACATAA+GGG - chr3_2:79911874-79911893 None:intergenic 50.0%
TCCACGTGGCACCAAACATA+AGG - chr3_2:79911873-79911892 None:intergenic 50.0%
GGTTGAGAGACGGGAAAGAA+GGG - chr3_2:79911006-79911025 None:intergenic 50.0%
GATGAAGTGAAGGTCGGAGT+TGG + chr3_2:79911525-79911544 Msa0428870:intron 50.0%
!! AGTGAAGGTCGGAGTTGGTA+AGG + chr3_2:79911530-79911549 Msa0428870:intron 50.0%
!! GTGAAGGTCGGAGTTGGTAA+GGG + chr3_2:79911531-79911550 Msa0428870:intron 50.0%
!! GAGTTTGTTGGTGTGAGGAG+AGG + chr3_2:79911596-79911615 Msa0428870:intron 50.0%
! GAGAAATGCTGTGACGGAGA+TGG + chr3_2:79911622-79911641 Msa0428870:intron 50.0%
! AAATGCTGTGACGGAGATGG+TGG + chr3_2:79911625-79911644 Msa0428870:intron 50.0%
ATAAGCGGAGGAGAGTTGCT+TGG + chr3_2:79911702-79911721 Msa0428870:intron 50.0%
GTTGCTTGGAGAGTTGAAGG+TGG + chr3_2:79911716-79911735 Msa0428870:intron 50.0%
TCCACGTGGCACCAAACATA+AGG + chr3_2:79911873-79911892 Msa0428870:intron 50.0%
CCACGTGGCACCAAACATAA+GGG + chr3_2:79911874-79911893 Msa0428870:intron 50.0%
CACGTGGCACCAAACATAAG+GGG + chr3_2:79911875-79911894 Msa0428870:intron 50.0%
! GCACCAAACATAAGGGGTGT+GGG + chr3_2:79911881-79911900 Msa0428870:intron 50.0%
GACCAGGTCAAAAATGGACC+AGG + chr3_2:79911919-79911938 Msa0428870:intron 50.0%
CCAGGTCAAAAATGGACCAG+GGG + chr3_2:79911921-79911940 Msa0428870:intron 50.0%
CAGGTCAAAAATGGACCAGG+GGG + chr3_2:79911922-79911941 Msa0428870:intron 50.0%
CATCTAACACGCTGCTTCAC+AGG + chr3_2:79912302-79912321 Msa0428870:intron 50.0%
! GGGTATTTTTCGCACGAGGT+TGG - chr3_2:79912482-79912501 None:intergenic 50.0%
ACCTCGTGCGAAAAATACCC+AGG + chr3_2:79912482-79912501 Msa0428870:CDS 50.0%
! ACCTGGGTATTTTTCGCACG+AGG - chr3_2:79912486-79912505 None:intergenic 50.0%
!! GAATCTCTGCAGTGCCGATA+AGG - chr3_2:79912754-79912773 None:intergenic 50.0%
GCACTGCAGAGATTCCTGTT+GGG + chr3_2:79912759-79912778 Msa0428870:CDS 50.0%
CACTGCAGAGATTCCTGTTG+GGG + chr3_2:79912760-79912779 Msa0428870:CDS 50.0%
ACTGCAGAGATTCCTGTTGG+GGG + chr3_2:79912761-79912780 Msa0428870:CDS 50.0%
TCCTGTTGGGGGACTTCATA+TGG + chr3_2:79912772-79912791 Msa0428870:CDS 50.0%
TCCATATGAAGTCCCCCAAC+AGG - chr3_2:79912776-79912795 None:intergenic 50.0%
AGCAGGTGCGCCTAAATCTT+CGG - chr3_2:79913335-79913354 None:intergenic 50.0%
ATTACCTCCCGGTCGAATTG+TGG + chr3_2:79913603-79913622 Msa0428870:intron 50.0%
TAATCCACAATTCGACCGGG+AGG - chr3_2:79913610-79913629 None:intergenic 50.0%
ACCTCCTTCCGTTGGGAATT+GGG + chr3_2:79913635-79913654 Msa0428870:intron 50.0%
CGTAATCCCCCAATTCCCAA+CGG - chr3_2:79913646-79913665 None:intergenic 50.0%
CACTGCATGCAGCTATAGTG+GGG - chr3_2:79913683-79913702 None:intergenic 50.0%
CCACTGCATGCAGCTATAGT+GGG - chr3_2:79913684-79913703 None:intergenic 50.0%
ACTATAGCTGCATGCAGTGG+CGG + chr3_2:79913684-79913703 Msa0428870:intron 50.0%
GCCCAAATTAGGTGACTGGT+TGG + chr3_2:79914739-79914758 Msa0428870:intron 50.0%
! ATTAGGTGACTGGTTGGTGC+CGG + chr3_2:79914745-79914764 Msa0428870:intron 50.0%
!! TTGGTGCCGGTCATTTGTCA+AGG + chr3_2:79914758-79914777 Msa0428870:intron 50.0%
CCCCCACTGCTCAAAATTTC+TGG + chr3_2:79915046-79915065 Msa0428870:intron 50.0%
!! AAAATTTCTGGCTCCGCCAC+TGG + chr3_2:79915058-79915077 Msa0428870:intron 50.0%
AGACTATCAGAGCCGTCGAT+TGG + chr3_2:79915223-79915242 Msa0428870:CDS 50.0%
! GACTATCAGAGCCGTCGATT+GGG + chr3_2:79915224-79915243 Msa0428870:CDS 50.0%
GATACCGGATTCCCAATCGA+CGG - chr3_2:79915238-79915257 None:intergenic 50.0%
!! CCAACAGAAGTACTTGTCCC+GGG + chr3_2:79915260-79915279 Msa0428870:CDS 50.0%
GGACAGATCCGTCTTCTTGT+TGG - chr3_2:79915391-79915410 None:intergenic 50.0%
TCCTTATTCCGGAGCCATTG+AGG + chr3_2:79915408-79915427 Msa0428870:CDS 50.0%
ATGAATGGCCTCAATGGCTC+CGG - chr3_2:79915419-79915438 None:intergenic 50.0%
GAGCCATTGAGGCCATTCAT+GGG + chr3_2:79915419-79915438 Msa0428870:CDS 50.0%
CATTGAGGCCATTCATGGGA+GGG + chr3_2:79915423-79915442 Msa0428870:CDS 50.0%
GCTGTTGCGGCATTAGATTG+TGG + chr3_2:79915512-79915531 Msa0428870:three_prime_UTR 50.0%
ATGTCTCTCGCCGGTACTAG+TGG - chr3_2:79908700-79908719 None:intergenic 55.0%
!! ACTAGTACCGGCGAGAGACA+TGG + chr3_2:79908699-79908718 Msa0428870:exon 55.0%
GAAGCGCGAAGAGGAACATG+TGG - chr3_2:79908782-79908801 None:intergenic 55.0%
! AGGAGAAAGGAAGCGCGAAG+AGG - chr3_2:79908791-79908810 None:intergenic 55.0%
GCTTTGGTGAGGCGTGGAAA+TGG - chr3_2:79908859-79908878 None:intergenic 55.0%
! AGGTGCAGAGAGCTTTGGTG+AGG - chr3_2:79908870-79908889 None:intergenic 55.0%
! GGAAGAGGTGCAGAGAGCTT+TGG - chr3_2:79908875-79908894 None:intergenic 55.0%
!! TGTTTGAACGGTGGCGGAAG+AGG - chr3_2:79908890-79908909 None:intergenic 55.0%
CGGAGATGTTTGAACGGTGG+CGG - chr3_2:79908896-79908915 None:intergenic 55.0%
GGTCGGAGATGTTTGAACGG+TGG - chr3_2:79908899-79908918 None:intergenic 55.0%
ATGACCTTGGTCGTCGGAGA+TGG - chr3_2:79908932-79908951 None:intergenic 55.0%
!! TCCCCTCCTATAGGAGCATC+TGG - chr3_2:79910059-79910078 None:intergenic 55.0%
AGATGCTCCTATAGGAGGGG+AGG + chr3_2:79910058-79910077 Msa0428870:CDS 55.0%
!! CCCCTGGTCCATTTTTGACC+TGG + chr3_2:79910605-79910624 Msa0428870:intron 55.0%
! TGACCTGGTCTTTGCTGACG+TGG + chr3_2:79910620-79910639 Msa0428870:intron 55.0%
GTTCCACGTCAGCAAAGACC+AGG - chr3_2:79910626-79910645 None:intergenic 55.0%
GGCACCAAACATAAGGGGTG+TGG - chr3_2:79911880-79911899 None:intergenic 55.0%
!! CCCTTATGTTTGGTGCCACG+TGG + chr3_2:79910652-79910671 Msa0428870:intron 55.0%
GAGAGACGGGAAAGAAGGGT+TGG - chr3_2:79911002-79911021 None:intergenic 55.0%
GGGTTGAGAGACGGGAAAGA+AGG - chr3_2:79911007-79911026 None:intergenic 55.0%
CGCAGTAGTGTTATCGGCGA+AGG - chr3_2:79911413-79911432 None:intergenic 55.0%
!! AAGGTCGGAGTTGGTAAGGG+TGG + chr3_2:79911534-79911553 Msa0428870:intron 55.0%
!! AGGTCGGAGTTGGTAAGGGT+GGG + chr3_2:79911535-79911554 Msa0428870:intron 55.0%
!!! ACGGAGATGGTGGCGGTTTT+GGG + chr3_2:79911635-79911654 Msa0428870:intron 55.0%
!!! GCGGTTTTGGGAGGAGTGTA+TGG + chr3_2:79911647-79911666 Msa0428870:intron 55.0%
! GGGAGGAGTGTATGGTGTTG+CGG + chr3_2:79911655-79911674 Msa0428870:intron 55.0%
!! CCCTTATGTTTGGTGCCACG+TGG - chr3_2:79910652-79910671 None:intergenic 55.0%
GGCACCAAACATAAGGGGTG+TGG + chr3_2:79911880-79911899 Msa0428870:intron 55.0%
GCACCCACACCCCTTATGTT+TGG - chr3_2:79911887-79911906 None:intergenic 55.0%
! TGACCTGGTCTTTGCTGACG+TGG - chr3_2:79910620-79910639 None:intergenic 55.0%
!! CCCCTGGTCCATTTTTGACC+TGG - chr3_2:79910605-79910624 None:intergenic 55.0%
TGAGGCCCAACCTTGCTTCA+TGG + chr3_2:79912585-79912604 Msa0428870:intron 55.0%
!! CTGCAGTGCCGATAAGGCAT+TGG - chr3_2:79912748-79912767 None:intergenic 55.0%
GGCACTGCAGAGATTCCTGT+TGG + chr3_2:79912758-79912777 Msa0428870:CDS 55.0%
CATTGTTTCCGTACCGAGGC+AGG + chr3_2:79912845-79912864 Msa0428870:CDS 55.0%
AGGTGCGCCTAAATCTTCGG+AGG - chr3_2:79913332-79913351 None:intergenic 55.0%
GATGTTGAGGCATGGATGCC+TGG + chr3_2:79913367-79913386 Msa0428870:CDS 55.0%
GACCTCCTTCCGTTGGGAAT+TGG + chr3_2:79913634-79913653 Msa0428870:intron 55.0%
CCTCCTTCCGTTGGGAATTG+GGG + chr3_2:79913636-79913655 Msa0428870:intron 55.0%
CTCCTTCCGTTGGGAATTGG+GGG + chr3_2:79913637-79913656 Msa0428870:intron 55.0%
ATCCCCCAATTCCCAACGGA+AGG - chr3_2:79913642-79913661 None:intergenic 55.0%
CCCACTATAGCTGCATGCAG+TGG + chr3_2:79913681-79913700 Msa0428870:intron 55.0%
GCCACTGCATGCAGCTATAG+TGG - chr3_2:79913685-79913704 None:intergenic 55.0%
AACCTATATGGCTGGGGGTG+GGG - chr3_2:79914239-79914258 None:intergenic 55.0%
GAACCTATATGGCTGGGGGT+GGG - chr3_2:79914240-79914259 None:intergenic 55.0%
AGAACCTATATGGCTGGGGG+TGG - chr3_2:79914241-79914260 None:intergenic 55.0%
TTAGTGCATGCAGCCAGTGG+CGG - chr3_2:79915074-79915093 None:intergenic 55.0%
GACTTAGTGCATGCAGCCAG+TGG - chr3_2:79915077-79915096 None:intergenic 55.0%
! AGAGCCGTCGATTGGGAATC+CGG + chr3_2:79915231-79915250 Msa0428870:CDS 55.0%
CCCGGGACAAGTACTTCTGT+TGG - chr3_2:79915263-79915282 None:intergenic 55.0%
GCCTCAATGGCTCCGGAATA+AGG - chr3_2:79915412-79915431 None:intergenic 55.0%
GGAGCCATTGAGGCCATTCA+TGG + chr3_2:79915418-79915437 Msa0428870:CDS 55.0%
CCTCCCATGAATGGCCTCAA+TGG - chr3_2:79915425-79915444 None:intergenic 55.0%
CCATTGAGGCCATTCATGGG+AGG + chr3_2:79915422-79915441 Msa0428870:CDS 55.0%
! CAGAGAGCTTTGGTGAGGCG+TGG - chr3_2:79908865-79908884 None:intergenic 60.0%
!! GAGATGGTGGTGGTGGTGGT+CGG - chr3_2:79908916-79908935 None:intergenic 60.0%
! TTGGTCGTCGGAGATGGTGG+TGG - chr3_2:79908926-79908945 None:intergenic 60.0%
ACCACCATCTCCGACGACCA+AGG + chr3_2:79908925-79908944 Msa0428870:CDS 60.0%
ACCTTGGTCGTCGGAGATGG+TGG - chr3_2:79908929-79908948 None:intergenic 60.0%
!! CTTTGGCAGTTTTGGCCCCC+TGG + chr3_2:79910589-79910608 Msa0428870:intron 60.0%
!! GGTCGGAGTTGGTAAGGGTG+GGG + chr3_2:79911536-79911555 Msa0428870:intron 60.0%
!! GTCGGAGTTGGTAAGGGTGG+GGG + chr3_2:79911537-79911556 Msa0428870:intron 60.0%
! TGCTGTGACGGAGATGGTGG+CGG + chr3_2:79911628-79911647 Msa0428870:intron 60.0%
!!! GACGGAGATGGTGGCGGTTT+TGG + chr3_2:79911634-79911653 Msa0428870:intron 60.0%
!!! GAGATGGTGGCGGTTTTGGG+AGG + chr3_2:79911638-79911657 Msa0428870:intron 60.0%
!! GTATGGTGTTGCGGCGAGAG+AGG + chr3_2:79911664-79911683 Msa0428870:intron 60.0%
GTGCCACGTCAGCAAAGACC+AGG + chr3_2:79911903-79911922 Msa0428870:intron 60.0%
!! CTTTGGCAGTTTTGGCCCCC+TGG - chr3_2:79910589-79910608 None:intergenic 60.0%
! GGGGCCGTAACCGCAACTTT+TGG + chr3_2:79912001-79912020 Msa0428870:intron 60.0%
CACGCTGCTTCACAGGTCAG+TGG + chr3_2:79912309-79912328 Msa0428870:intron 60.0%
! GTGCTGCTGGCACTGCAACA+AGG + chr3_2:79912867-79912886 Msa0428870:CDS 60.0%
CCCCAATTCCCAACGGAAGG+AGG - chr3_2:79913639-79913658 None:intergenic 60.0%
!! GTCGGAGATGGTGGTGGTGG+TGG - chr3_2:79908920-79908939 None:intergenic 65.0%
!! GTCGTCGGAGATGGTGGTGG+TGG - chr3_2:79908923-79908942 None:intergenic 65.0%
! GGGGCCGGAACCGCAACTTT+TGG - chr3_2:79910528-79910547 None:intergenic 65.0%
CAGCAGCACCTGCCTCGGTA+CGG - chr3_2:79912856-79912875 None:intergenic 65.0%
AGTGCCAGCAGCACCTGCCT+CGG - chr3_2:79912861-79912880 None:intergenic 65.0%
GTCCCCACCCCCAGCCATAT+AGG + chr3_2:79914234-79914253 Msa0428870:intron 65.0%
! CGTACCGAGGCAGGTGCTGC+TGG + chr3_2:79912854-79912873 Msa0428870:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 79908692 79915759 79908692 ID=Msa0428870;Name=Msa0428870
chr3_2 mRNA 79908692 79915759 79908692 ID=Msa0428870-mRNA-1;Parent=Msa0428870;Name=Msa0428870-mRNA-1;_AED=0.13;_eAED=0.13;_QI=26|1|1|1|0.88|1|10|287|520
chr3_2 exon 79908692 79908946 79908692 ID=Msa0428870-mRNA-1:exon:21622;Parent=Msa0428870-mRNA-1
chr3_2 exon 79909054 79909202 79909054 ID=Msa0428870-mRNA-1:exon:21623;Parent=Msa0428870-mRNA-1
chr3_2 exon 79909762 79909855 79909762 ID=Msa0428870-mRNA-1:exon:21624;Parent=Msa0428870-mRNA-1
chr3_2 exon 79909955 79910103 79909955 ID=Msa0428870-mRNA-1:exon:21625;Parent=Msa0428870-mRNA-1
chr3_2 exon 79910231 79910323 79910231 ID=Msa0428870-mRNA-1:exon:21626;Parent=Msa0428870-mRNA-1
chr3_2 exon 79912324 79912503 79912324 ID=Msa0428870-mRNA-1:exon:21627;Parent=Msa0428870-mRNA-1
chr3_2 exon 79912722 79912888 79912722 ID=Msa0428870-mRNA-1:exon:21628;Parent=Msa0428870-mRNA-1
chr3_2 exon 79913093 79913227 79913093 ID=Msa0428870-mRNA-1:exon:21629;Parent=Msa0428870-mRNA-1
chr3_2 exon 79913315 79913408 79913315 ID=Msa0428870-mRNA-1:exon:21630;Parent=Msa0428870-mRNA-1
chr3_2 exon 79915200 79915759 79915200 ID=Msa0428870-mRNA-1:exon:21631;Parent=Msa0428870-mRNA-1
chr3_2 five_prime_UTR 79908692 79908717 79908692 ID=Msa0428870-mRNA-1:five_prime_utr;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79908718 79908946 79908718 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79909054 79909202 79909054 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79909762 79909855 79909762 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79909955 79910103 79909955 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79910231 79910323 79910231 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79912324 79912503 79912324 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79912722 79912888 79912722 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79913093 79913227 79913093 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79913315 79913408 79913315 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 CDS 79915200 79915472 79915200 ID=Msa0428870-mRNA-1:cds;Parent=Msa0428870-mRNA-1
chr3_2 three_prime_UTR 79915473 79915759 79915473 ID=Msa0428870-mRNA-1:three_prime_utr;Parent=Msa0428870-mRNA-1
Gene Sequence

>Msa0428870

ATGGATTCACATTGTTATCTTCACAGAACAACCTTCCAAACTCTCAAACTCAGTTCAACTCCCACATGTTCCTCTTCGCGCTTCCTTTCTCCTCCACTTCACAAAACCAAAATTCCAACCATTCATTCCCACAAATTTCCATTTCCACGCCTCACCAAAGCTCTCTGCACCTCTTCCGCCACCGTTCAAACATCTCCGACCACCACCACCACCATCTCCGACGACCAAGGTGGAAAACCTCAATGGAAAGCTACTATAGACTTCAAGTGGATCAAGGATAACAAAGAAACTGTTGCTGTTAATATAAAGAACCGCAATTCTGATGCTAATTTGGAACTCATTCTTCATCTTTATGATAAATTGTTTATTCTTCAGAAGGAAGTTGAGAGAGTTCGTGGAGAGAGAAATGCAGTGGCTAATAAGATGAAGGGAAAATTAGAACCATCTGAGCGCCAAACACTAACTGAACAAGGGAAGAATTTGAAGGAGGGACTTACTGCTTTGGAAGAAGACCTGGTGAAGCTTAATGATGAGCTTCAACGGGAGGCGCAGTGTATACCAAACATGACTCATCCAGATGCTCCTATAGGAGGGGAGGATTCTTCCACAATAAGGAAGACGGTTGGCAGCTCTCCTAAATTTAGTTTTCCTGTCAAGGATCATCTCCAACTTGGAAAGGAACTTGATCTTTTTGATTTTGATGCTGCTGCAGAGGTCAGTGGTTCAAAGTTCTACTACCTGAAAAATGAAGCAGTTCTATTAGAGATGGCTCTTCTCAATTGGACGCTCTCAGAAGTGATGAAGAGAGGCTTTACTCCACTAACAACACCTGAAATTGTACGGTCCTCTGTTGTTGAAAAATGTGGGTTCCAACCTCGTGCGAAAAATACCCAGGTTTATTCTATCGATGACAGTGACCAATGCCTTATCGGCACTGCAGAGATTCCTGTTGGGGGACTTCATATGGATTCTATACTTGCTGACTCAATGTTGCCCTTAAAATATGTCGCATTTTCTCATTGTTTCCGTACCGAGGCAGGTGCTGCTGGCACTGCAACAAGAGGTCTTTATCGTGTCCACCAATTCAGCAAAATTGAAATGTTTATTTTCTGCCGCCCAGAAGAGAGTGATTATTACCACGAAGAACTTATTAAAATTGAAGAAGACATGTTCTCATCCCTAGGGTTACATTTCAAAACTTTGGATATGGCCTCCGAAGATTTAGGCGCACCTGCTTATCGTAAATTTGATGTTGAGGCATGGATGCCTGGTTTAGAACGGTTTGGTGAGATCTCAAGCGCATCAAATTGCACAGACTATCAGAGCCGTCGATTGGGAATCCGGTATCGTCCAACAGAAGTACTTGTCCCGGGTCCAAAAAAATCTAAAGGCAATCTCGCTCCGCCACAGTTTGTTCACACGTTAAACGCAACAGCATGTGCTGTACCACGAATGATTATATGTCTACTTGAGAATTACCAACAAGAAGACGGATCTGTCCTTATTCCGGAGCCATTGAGGCCATTCATGGGAGGGCTTGATATTATCACAAGAAAATCATGA

Protein sequence

>Msa0428870

MDSHCYLHRTTFQTLKLSSTPTCSSSRFLSPPLHKTKIPTIHSHKFPFPRLTKALCTSSATVQTSPTTTTTISDDQGGKPQWKATIDFKWIKDNKETVAVNIKNRNSDANLELILHLYDKLFILQKEVERVRGERNAVANKMKGKLEPSERQTLTEQGKNLKEGLTALEEDLVKLNDELQREAQCIPNMTHPDAPIGGEDSSTIRKTVGSSPKFSFPVKDHLQLGKELDLFDFDAAAEVSGSKFYYLKNEAVLLEMALLNWTLSEVMKRGFTPLTTPEIVRSSVVEKCGFQPRAKNTQVYSIDDSDQCLIGTAEIPVGGLHMDSILADSMLPLKYVAFSHCFRTEAGAAGTATRGLYRVHQFSKIEMFIFCRPEESDYYHEELIKIEEDMFSSLGLHFKTLDMASEDLGAPAYRKFDVEAWMPGLERFGEISSASNCTDYQSRRLGIRYRPTEVLVPGPKKSKGNLAPPQFVHTLNATACAVPRMIICLLENYQQEDGSVLIPEPLRPFMGGLDIITRKS*