AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480100 MtrunA17_Chr3g0140531 97.240 471 13 0 1 471 1 471 0.0 942
Msa0480100 MtrunA17_Chr1g0146331 68.845 459 140 2 14 471 10 466 0.0 676
Msa0480100 MtrunA17_Chr2g0293331 68.202 456 143 1 16 471 4 457 0.0 671
Msa0480100 MtrunA17_Chr1g0146391 67.467 458 147 1 14 471 2 457 0.0 655
Msa0480100 MtrunA17_Chr1g0146411 57.113 471 193 4 2 470 9 472 0.0 552
Msa0480100 MtrunA17_Chr3g0140541 57.447 470 195 2 1 470 5 469 0.0 542
Msa0480100 MtrunA17_Chr3g0140761 52.391 460 217 2 14 471 23 482 0.0 515
Msa0480100 MtrunA17_Chr1g0146491 51.193 461 223 2 13 471 12 472 7.35e-179 509
Msa0480100 MtrunA17_Chr8g0384661 52.772 451 208 3 18 467 44 490 8.80e-173 494
Msa0480100 MtrunA17_Chr1g0206871 52.088 455 207 3 23 467 14 467 1.78e-168 483
Msa0480100 MtrunA17_Chr4g0037201 49.467 469 231 2 5 467 40 508 2.21e-168 484
Msa0480100 MtrunA17_Chr3g0125081 49.028 463 231 3 7 467 16 475 2.49e-166 478
Msa0480100 MtrunA17_Chr3g0125101 48.491 464 233 4 7 467 16 476 3.38e-163 469
Msa0480100 MtrunA17_Chr1g0159761 50.108 463 228 2 7 467 10 471 6.98e-163 469
Msa0480100 MtrunA17_Chr3g0125091 47.957 465 234 5 7 467 16 476 3.92e-162 467
Msa0480100 MtrunA17_Chr3g0130641 47.403 462 232 4 10 467 19 473 1.25e-156 452
Msa0480100 MtrunA17_Chr3g0130651 50.000 470 226 6 1 467 1 464 1.70e-152 442
Msa0480100 MtrunA17_Chr3g0103211 45.805 441 235 2 18 457 17 454 2.99e-145 423
Msa0480100 MtrunA17_Chr3g0103231 43.886 458 252 3 1 457 1 454 9.72e-144 419
Msa0480100 MtrunA17_Chr3g0103221 45.291 446 240 2 21 465 27 469 1.07e-142 417
Msa0480100 MtrunA17_Chr5g0447221 44.521 438 235 5 23 457 28 460 3.10e-134 395
Msa0480100 MtrunA17_Chr3g0103271 41.485 458 263 3 2 457 5 459 9.10e-124 369
Msa0480100 MtrunA17_Chr1g0206851 50.137 365 174 3 105 467 19 377 9.83e-123 363
Msa0480100 MtrunA17_Chr5g0447231 39.359 437 260 3 23 457 24 457 1.81e-109 332
Msa0480100 MtrunA17_Chr1g0206831 50.301 332 157 3 137 466 14 339 4.22e-105 316
Msa0480100 MtrunA17_Chr3g0103251 40.278 360 188 3 128 460 11 370 4.01e-96 295
Msa0480100 MtrunA17_Chr5g0402151 48.986 296 117 4 27 322 3 264 1.39e-87 269
Msa0480100 MtrunA17_Chr1g0206821 53.086 243 113 1 13 254 11 253 2.06e-81 261
Msa0480100 MtrunA17_Chr1g0206821 52.558 215 101 1 254 467 313 527 5.67e-75 244
Msa0480100 MtrunA17_Chr3g0130671 46.288 229 121 2 4 232 20 246 1.63e-63 207
Msa0480100 MtrunA17_Chr3g0130661 47.778 180 90 2 289 467 1 177 9.37e-57 186
Msa0480100 MtrunA17_Chr6g0458931 25.586 469 310 12 4 467 20 454 3.58e-41 152
Msa0480100 MtrunA17_Chr2g0331721 27.045 440 275 15 2 432 23 425 1.29e-38 145
Msa0480100 MtrunA17_Chr4g0057851 27.295 414 262 9 24 433 10 388 1.70e-38 145
Msa0480100 MtrunA17_Chr8g0376991 25.949 474 305 13 1 467 1 435 1.99e-37 142
Msa0480100 MtrunA17_Chr1g0184721 25.751 466 305 13 10 467 5 437 8.38e-37 140
Msa0480100 MtrunA17_Chr3g0077651 28.125 448 285 10 25 467 53 468 4.81e-35 136
Msa0480100 MtrunA17_Chr1g0146351 56.311 103 44 1 34 136 13 114 8.48e-34 123
Msa0480100 MtrunA17_Chr5g0422741 27.586 464 292 12 13 467 10 438 8.54e-34 132
Msa0480100 MtrunA17_Chr1g0206861 61.957 92 35 0 14 105 11 102 1.33e-33 124
Msa0480100 MtrunA17_Chr4g0027241 27.803 446 266 15 3 425 10 422 1.71e-33 131
Msa0480100 MtrunA17_Chr1g0206841 53.333 105 46 1 1 105 1 102 1.64e-32 119
Msa0480100 MtrunA17_Chr3g0103261 43.704 135 75 1 1 135 1 134 3.67e-32 120
Msa0480100 MtrunA17_Chr1g0198541 26.509 464 301 11 8 467 9 436 6.50e-31 124
Msa0480100 MtrunA17_Chr3g0122921 24.528 477 292 15 6 467 4 427 1.38e-30 122
Msa0480100 MtrunA17_Chr2g0328081 25.895 475 292 11 4 467 2 427 2.23e-29 119
Msa0480100 MtrunA17_Chr1g0198531 25.581 473 309 12 1 467 1 436 4.38e-29 119
Msa0480100 MtrunA17_Chr6g0458921 26.022 465 292 11 14 467 4 427 8.27e-29 117
Msa0480100 MtrunA17_Chr6g0459011 25.472 424 273 10 40 457 1 387 1.83e-28 116
Msa0480100 MtrunA17_Chr6g0459031 25.586 469 294 12 10 467 3 427 1.92e-27 114
Msa0480100 MtrunA17_Chr7g0230011 24.946 465 306 13 10 467 14 442 1.51e-26 111
Msa0480100 MtrunA17_Chr1g0198081 24.370 476 320 14 2 467 33 478 1.81e-25 108
Msa0480100 MtrunA17_Chr6g0459021 24.009 454 294 11 24 467 34 446 2.98e-25 107
Msa0480100 MtrunA17_Chr3g0143701 24.670 454 303 11 15 457 73 498 1.25e-24 106
Msa0480100 MtrunA17_Chr4g0038711 27.692 455 279 15 24 460 70 492 4.13e-23 102
Msa0480100 MtrunA17_Chr8g0387941 23.126 467 321 11 10 467 10 447 7.10e-23 100
Msa0480100 MtrunA17_Chr6g0459001 24.319 477 305 12 24 467 22 475 5.00e-22 98.6
Msa0480100 MtrunA17_Chr5g0406331 23.144 458 310 14 24 470 86 512 2.77e-14 75.1
Msa0480100 MtrunA17_Chr2g0281341 22.414 464 299 13 24 467 95 517 2.27e-13 72.0
Msa0480100 MtrunA17_Chr5g0436281 21.635 416 284 11 55 467 4 380 3.25e-13 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480100 AT1G10010.2 53.084 454 212 1 15 467 19 472 0.0 533
Msa0480100 AT1G10010.1 53.084 454 212 1 15 467 18 471 0.0 533
Msa0480100 AT1G58360.1 53.407 455 211 1 14 467 26 480 0.0 523
Msa0480100 AT5G49630.1 52.401 479 215 5 1 467 1 478 1.55e-179 511
Msa0480100 AT5G09220.1 50.885 452 219 2 18 467 39 489 9.36e-170 487
Msa0480100 AT5G63850.1 50.221 452 222 2 18 467 12 462 1.13e-164 473
Msa0480100 AT1G44100.1 48.614 469 227 3 9 467 12 476 3.53e-164 472
Msa0480100 AT1G77380.1 49.451 455 228 2 14 467 19 472 1.46e-160 463
Msa0480100 AT5G23810.1 44.820 444 236 4 20 457 21 461 2.03e-124 370
Msa0480100 AT5G23810.2 46.789 327 168 3 20 343 21 344 1.45e-96 295
Msa0480100 AT5G23810.4 44.118 238 127 3 20 254 21 255 2.21e-60 199
Msa0480100 AT5G23810.5 48.168 191 96 2 20 207 21 211 1.01e-52 177
Msa0480100 AT5G23810.3 48.168 191 96 2 20 207 21 211 1.01e-52 177
Msa0480100 AT1G24400.1 26.850 473 302 11 1 467 6 440 2.06e-40 150
Msa0480100 AT5G40780.1 24.947 473 309 13 2 467 12 445 3.57e-37 142
Msa0480100 AT1G48640.1 26.824 466 288 14 14 467 28 452 1.13e-36 140
Msa0480100 AT1G61270.1 27.527 465 290 11 5 454 2 434 5.28e-36 139
Msa0480100 AT1G67640.1 26.415 477 304 11 1 467 1 440 1.14e-35 137
Msa0480100 AT1G71680.1 26.598 485 292 12 2 467 8 447 1.26e-35 137
Msa0480100 AT5G40780.3 25.173 433 283 11 40 467 1 397 7.28e-35 134
Msa0480100 AT5G40780.2 25.173 433 283 11 40 467 1 397 7.28e-35 134
Msa0480100 AT3G01760.1 27.640 445 284 12 24 463 31 442 1.97e-34 134
Msa0480100 AT1G71680.2 28.375 363 206 10 2 342 8 338 6.67e-33 128
Msa0480100 AT1G25530.1 27.902 448 284 12 24 467 27 439 1.81e-31 125
Msa0480100 AT1G08230.2 25.466 483 309 16 1 467 1 448 1.51e-25 109
Msa0480100 AT5G41800.1 23.348 454 307 11 23 467 25 446 1.02e-20 94.7
Msa0480100 AT3G55740.1 22.782 417 278 12 55 467 60 436 5.55e-16 80.5
Msa0480100 AT1G08230.3 26.875 320 195 11 160 467 56 348 9.02e-16 79.0
Msa0480100 AT3G55740.2 22.749 422 272 12 55 467 4 380 1.08e-15 79.0
Msa0480100 AT3G55740.3 22.749 422 272 12 55 467 4 380 1.08e-15 79.0
Msa0480100 AT1G08230.4 26.875 320 195 11 160 467 37 329 1.22e-15 78.6
Msa0480100 AT1G08230.6 26.875 320 195 11 160 467 37 329 1.22e-15 78.6
Msa0480100 AT1G08230.5 26.875 320 195 11 160 467 37 329 1.22e-15 78.6
Msa0480100 AT2G39890.2 23.741 417 274 14 55 467 63 439 1.51e-15 79.0
Msa0480100 AT2G39890.1 23.741 417 274 14 55 467 63 439 1.51e-15 79.0
Msa0480100 AT2G39890.3 23.741 417 274 14 55 467 4 380 2.70e-15 77.8
Msa0480100 AT2G36590.1 22.043 372 250 10 55 424 57 390 3.08e-13 72.0
Msa0480100 AT4G35180.1 24.722 449 254 17 19 432 42 441 5.53e-12 68.2

Find 131 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTCTGGTTGGTTGCTTT+GGG 0.120510 3_3:+85278984 Msa0480100:CDS
AATGTTAACTTATGGAAATT+TGG 0.155373 3_3:-85278327 None:intergenic
TCAACTTATTTAGACTAATT+TGG 0.167184 3_3:+85279266 Msa0480100:CDS
TGCTTGGAGCATTTGGATTT+TGG 0.172242 3_3:+85279359 Msa0480100:CDS
GCCCTTCTGGTTGGTTGCTT+TGG 0.204187 3_3:+85278983 Msa0480100:CDS
TATCAGAAGAAGACAAAATT+TGG 0.214366 3_3:+85278616 Msa0480100:CDS
TTTCTCATCTGTGTGCTTTC+CGG 0.236560 3_3:-85278840 None:intergenic
GGGAACATCCTCACTGGTTT+TGG 0.241475 3_3:+85278951 Msa0480100:CDS
AATCTGAATCTTTATCTAAA+TGG 0.241916 3_3:+85276693 Msa0480100:exon
CTTGCATTGCTTGGAGCATT+TGG 0.251558 3_3:+85279352 Msa0480100:CDS
AATCCCTACATGCTCGGTTT+TGG 0.254191 3_3:+85278276 Msa0480100:CDS
AGGAGGCCCATCATATTTAA+TGG 0.259641 3_3:-85276494 None:intergenic
TTGATATCAATGTTAACTTA+TGG 0.271388 3_3:-85278335 None:intergenic
AAAACTTGCAATAAGCTTCA+TGG 0.288812 3_3:-85278248 None:intergenic
ATTTATTTACCATTGGATTA+AGG 0.297831 3_3:-85276514 None:intergenic
ATGTTAACTTATGGAAATTT+GGG 0.301767 3_3:-85278326 None:intergenic
GAGGACAATATTTGTGATAA+TGG 0.301794 3_3:+85279288 Msa0480100:CDS
GGAGAAAGAACCAGTTTGTT+TGG 0.303768 3_3:+85278573 Msa0480100:CDS
GCGTGTTCAGACGTAATAAT+TGG 0.308562 3_3:-85279720 None:intergenic
ATTTCAACTATACGAAATAT+TGG 0.312065 3_3:-85279163 None:intergenic
GAGGAACACCCAAACAAAAT+TGG 0.316656 3_3:+85279226 Msa0480100:CDS
CCATATGGTAGGAGCATATC+AGG 0.321505 3_3:+85279025 Msa0480100:CDS
GTTGCTGCAATTACCTCTTT+TGG 0.324708 3_3:+85278360 Msa0480100:CDS
TGGTTTGAAACATGTTGATT+AGG 0.325618 3_3:+85276452 Msa0480100:five_prime_UTR
AATATTTCGTATAGTTGAAA+TGG 0.334003 3_3:+85279165 Msa0480100:CDS
GCTGCAGTTGGTTCCATTCA+TGG 0.337754 3_3:+85279502 Msa0480100:CDS
AGACACGATATTTGTATGTT+TGG 0.339654 3_3:+85276424 Msa0480100:five_prime_UTR
ATCCTCCATTGTGGTTTGTT+AGG 0.343459 3_3:-85276238 None:intergenic
CTCTTGCCATTAACCGAGTC+TGG 0.346028 3_3:-85277546 None:intergenic
AACAATAGCCTATTTCAAAA+TGG 0.348097 3_3:+85279566 Msa0480100:exon
AACGAGTTTCTTGCATTGCT+TGG 0.351193 3_3:+85279343 Msa0480100:CDS
AGATATCCAGACTCGGTTAA+TGG 0.352529 3_3:+85277540 Msa0480100:CDS
TCACTTGGCTATGCTGCATT+TGG 0.358697 3_3:+85278915 Msa0480100:CDS
TATCTAAATGGAGGCTGAAA+AGG 0.368758 3_3:+85276705 Msa0480100:exon
TACTGTTGTCTATGATATAA+TGG 0.373164 3_3:+85278686 Msa0480100:CDS
ATGAGAAAGGCAAATGTGTT+GGG 0.381443 3_3:+85278855 Msa0480100:CDS
ATTGTAAGTGTAAATAGAAA+TGG 0.388984 3_3:-85277499 None:intergenic
TACTTTGGTTCCAAACAAAC+TGG 0.405444 3_3:-85278583 None:intergenic
TGATAACCCTGGTCCTACTT+TGG 0.415696 3_3:-85278598 None:intergenic
ATTCTTACTAATTCCATGAA+TGG 0.418096 3_3:-85279515 None:intergenic
TCTCTAGCAGTTGTGGTGTC+AGG 0.423733 3_3:+85278408 Msa0480100:CDS
AAGTGTTCCATTAAATATGA+TGG 0.436874 3_3:+85276487 Msa0480100:five_prime_UTR
CCTGATATGCTCCTACCATA+TGG 0.439103 3_3:-85279025 None:intergenic
GGTGGTGGGTGCAGGAGTGT+TGG 0.440169 3_3:+85277410 Msa0480100:CDS
CAGGAGTGTTGGCTCTAGCA+TGG 0.444476 3_3:+85277421 Msa0480100:CDS
AACAAACAAGACTCAATAGT+TGG 0.446187 3_3:-85279462 None:intergenic
TTCCTCCTATGTGGTTCACT+TGG 0.448096 3_3:+85278900 Msa0480100:CDS
GCATTTGGTGATCACACTCC+AGG 0.452200 3_3:+85278930 Msa0480100:CDS
ATAACAGTGGTGGTGGGTGC+AGG 0.463122 3_3:+85277402 Msa0480100:CDS
GGTTATGCATTAATTGGAAG+TGG 0.469904 3_3:+85278381 Msa0480100:CDS
ATATTTCGTATAGTTGAAAT+GGG 0.469932 3_3:+85279166 Msa0480100:CDS
GAGAGATGTGCATTTGTATC+GGG 0.470377 3_3:-85279399 None:intergenic
TGAGAGATGTGCATTTGTAT+CGG 0.473205 3_3:-85279400 None:intergenic
AGTTTGTTTGGAACCAAAGT+AGG 0.474169 3_3:+85278585 Msa0480100:CDS
ATTCAGTATGGGAAACTCGC+TGG 0.477343 3_3:+85277844 Msa0480100:CDS
TGTATGCATTATAGTCCATA+TGG 0.479211 3_3:+85279010 Msa0480100:CDS
GATGGAAGAATCAAGAGAAC+CGG 0.479976 3_3:+85276769 Msa0480100:CDS
TCAAATAATCCCTACATGCT+CGG 0.484226 3_3:+85278270 Msa0480100:CDS
ATCTAAATGGAGGCTGAAAA+GGG 0.484463 3_3:+85276706 Msa0480100:exon
GCGTTCATCTTTCATAAATG+AGG 0.484830 3_3:+85279207 Msa0480100:CDS
CCTTCTGGTTGGTTGCTTTG+GGG 0.485026 3_3:+85278985 Msa0480100:CDS
GTTTCAGTAGCTGCTGCAGT+TGG 0.487316 3_3:+85279490 Msa0480100:CDS
ATCCCAAAACCGAGCATGTA+GGG 0.490118 3_3:-85278279 None:intergenic
CTCATCTGTGTGCTTTCCGG+TGG 0.491821 3_3:-85278837 None:intergenic
GCAAGAAACTCGTTGAAGAA+TGG 0.506573 3_3:-85279334 None:intergenic
AATTAATGCATAACCAAAAG+AGG 0.512333 3_3:-85278373 None:intergenic
ACAGTACTCAAATGAGGAAG+TGG 0.516285 3_3:+85276741 Msa0480100:CDS
GATGAGAAAGGCAAATGTGT+TGG 0.517908 3_3:+85278854 Msa0480100:CDS
TTGGAAATTCTAAAATAACT+TGG 0.519238 3_3:-85279701 None:intergenic
TGGACTCTCTCTAGCAGTTG+TGG 0.531790 3_3:+85278401 Msa0480100:CDS
GAGAAATTACACTTATATGC+AGG 0.536730 3_3:+85277566 Msa0480100:CDS
TTCAGTATGGGAAACTCGCT+GGG 0.539810 3_3:+85277845 Msa0480100:CDS
GCATGGGCAATTTCTCAACT+AGG 0.542467 3_3:+85277438 Msa0480100:CDS
AATGAGGAAGTGGATGATGA+TGG 0.542692 3_3:+85276751 Msa0480100:CDS
TCTCAACTAGGATGGATAGC+TGG 0.542950 3_3:+85277450 Msa0480100:CDS
ACACATAATAACAGTGGTGG+TGG 0.543885 3_3:+85277395 Msa0480100:CDS
ACTTATTTAGACTAATTTGG+AGG 0.544065 3_3:+85279269 Msa0480100:CDS
GAAATTCTAAAATAACTTGG+TGG 0.544940 3_3:-85279698 None:intergenic
TTTGTGGATTGATTCAGTAT+GGG 0.545041 3_3:+85277833 Msa0480100:CDS
AGTGTTCCATTAAATATGAT+GGG 0.545983 3_3:+85276488 Msa0480100:five_prime_UTR
TTTGGAACCAAAGTAGGACC+AGG 0.554273 3_3:+85278591 Msa0480100:CDS
TTGTCTTCTTCTGATAACCC+TGG 0.555389 3_3:-85278609 None:intergenic
ACATGAGCTACAATAACTCT+AGG 0.559577 3_3:-85279591 None:intergenic
CCCCAAAGCAACCAACCAGA+AGG 0.561618 3_3:-85278985 None:intergenic
CATTTAATTTGCACCACATG+TGG 0.563370 3_3:+85276199 Msa0480100:five_prime_UTR
GGGCAATTTCTCAACTAGGA+TGG 0.565746 3_3:+85277442 Msa0480100:CDS
GGAAAGCACACAGATGAGAA+AGG 0.569880 3_3:+85278842 Msa0480100:CDS
TATCAAACAGTACTCAAATG+AGG 0.572155 3_3:+85276735 Msa0480100:CDS
AAACCAGTGAGGATGTTCCC+TGG 0.577786 3_3:-85278948 None:intergenic
TATACCTAGGTAAGCATGAA+CGG 0.581147 3_3:-85277589 None:intergenic
CACATTAAAGTCAAATCCAC+CGG 0.582623 3_3:+85278821 Msa0480100:CDS
GGTTGCAGGGAACGTGTTGA+CGG 0.584738 3_3:+85277365 Msa0480100:intron
GATGGGCCTCCTTAATCCAA+TGG 0.586015 3_3:+85276505 Msa0480100:five_prime_UTR
TTTGAGACAATAAAATCTGA+AGG 0.587153 3_3:-85278302 None:intergenic
TATTTACCATTGGATTAAGG+AGG 0.589677 3_3:-85276511 None:intergenic
AGGAGTGTTGGCTCTAGCAT+GGG 0.591346 3_3:+85277422 Msa0480100:CDS
GATCACATTCACAGAGAAGG+AGG 0.592203 3_3:+85276333 Msa0480100:five_prime_UTR
GACGTACGATATTGCTGCAA+CGG 0.593413 3_3:+85276360 Msa0480100:five_prime_UTR
CTGAATCTTTATCTAAATGG+AGG 0.596128 3_3:+85276696 Msa0480100:exon
TCACATTCACAGAGAAGGAG+GGG 0.596267 3_3:+85276335 Msa0480100:five_prime_UTR
GATCCCAAAACCGAGCATGT+AGG 0.597152 3_3:-85278280 None:intergenic
CACATAATAACAGTGGTGGT+GGG 0.606869 3_3:+85277396 Msa0480100:CDS
ACTCCAGGGAACATCCTCAC+TGG 0.606948 3_3:+85278945 Msa0480100:CDS
TATAACTTGCTCTACAAGCA+TGG 0.608733 3_3:+85277885 Msa0480100:CDS
CATAGCCAAGTGAACCACAT+AGG 0.609497 3_3:-85278905 None:intergenic
AAACTCGCTGGGATTACAGT+GGG 0.611394 3_3:+85277856 Msa0480100:CDS
AGCCAAGTGAACCACATAGG+AGG 0.616311 3_3:-85278902 None:intergenic
CCCAAAGCAACCAACCAGAA+GGG 0.617292 3_3:-85278984 None:intergenic
CAGGCCGTTCATGCTTACCT+AGG 0.625589 3_3:+85277585 Msa0480100:CDS
AATGGCCACAGTTATTGCCA+TGG 0.626509 3_3:+85279306 Msa0480100:CDS
ATCACATTCACAGAGAAGGA+GGG 0.626540 3_3:+85276334 Msa0480100:five_prime_UTR
GTTGAAGAATGGCATTGCCA+TGG 0.631337 3_3:-85279323 None:intergenic
AAATGGGTGCCAACATGATG+TGG 0.632507 3_3:+85279182 Msa0480100:CDS
TGAGAAAGGCAAATGTGTTG+GGG 0.635338 3_3:+85278856 Msa0480100:CDS
GAGGATCACATTCACAGAGA+AGG 0.638266 3_3:+85276330 Msa0480100:five_prime_UTR
TGAACGCGGCCACATCATGT+TGG 0.643082 3_3:-85279191 None:intergenic
TGCATTATAGTCCATATGGT+AGG 0.648433 3_3:+85279014 Msa0480100:CDS
ATCGGGAAGAAGACAATGAG+TGG 0.651715 3_3:-85279382 None:intergenic
CACATTCACAGAGAAGGAGG+GGG 0.652619 3_3:+85276336 Msa0480100:five_prime_UTR
CATTTGGTGATCACACTCCA+GGG 0.652654 3_3:+85278931 Msa0480100:CDS
TTGGAACCAAAGTAGGACCA+GGG 0.663393 3_3:+85278592 Msa0480100:CDS
TTGTTATAGATATCCAGACT+CGG 0.668178 3_3:+85277533 Msa0480100:CDS
CATAAAATCCAAAACCAGTG+AGG 0.669591 3_3:-85278959 None:intergenic
AACACACATAATAACAGTGG+TGG 0.670192 3_3:+85277392 Msa0480100:CDS
CACCTAACAAACCACAATGG+AGG 0.674924 3_3:+85276236 Msa0480100:five_prime_UTR
GAAACTCGCTGGGATTACAG+TGG 0.694611 3_3:+85277855 Msa0480100:CDS
AACAACACACATAATAACAG+TGG 0.695542 3_3:+85277389 Msa0480100:CDS
AGAATTTGTTAGACCACATG+TGG 0.702828 3_3:-85276212 None:intergenic
CATTGCCATGGCAATAACTG+TGG 0.713530 3_3:-85279311 None:intergenic
CTGCACCTAACAAACCACAA+TGG 0.736218 3_3:+85276233 Msa0480100:five_prime_UTR
TCATTTATGAAAGATGAACG+CGG 0.742748 3_3:-85279205 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTATTTATATTAATTTTTG+TGG + chr3_3:85277120-85277139 Msa0480100:intron 10.0%
!!! CTATTTATATTAATTTTTGT+GGG + chr3_3:85277121-85277140 Msa0480100:intron 10.0%
!!! TATTTATATTAATTTTTGTG+GGG + chr3_3:85277122-85277141 Msa0480100:intron 10.0%
!! TAAAAAAAAAAACACAATGA+AGG + chr3_3:85276277-85276296 Msa0480100:five_prime_UTR 15.0%
!! TTACAATATTTATTTACCAT+TGG - chr3_3:85276524-85276543 None:intergenic 15.0%
!!! TTTTCTTTTTTTGCAATAAA+AGG + chr3_3:85277095-85277114 Msa0480100:intron 15.0%
!! AGTATATTTGATGTATTTAA+TGG + chr3_3:85277314-85277333 Msa0480100:intron 15.0%
!! ATGTATTTAATGGAAATAAT+TGG + chr3_3:85277324-85277343 Msa0480100:intron 15.0%
!! ATTAACAATACCATAAATTA+GGG - chr3_3:85278177-85278196 None:intergenic 15.0%
!! TTTCATAATTATCCAATAAT+TGG - chr3_3:85278489-85278508 None:intergenic 15.0%
!!! TCTAATCTATGTTTTTATTT+AGG + chr3_3:85278797-85278816 Msa0480100:intron 15.0%
!! AATTAAGAAAAAACTTCATG+AGG + chr3_3:85276311-85276330 Msa0480100:five_prime_UTR 20.0%
!!! TTTGTTTTCATAGAGTTTTT+TGG + chr3_3:85276388-85276407 Msa0480100:five_prime_UTR 20.0%
!! ATTTATTTACCATTGGATTA+AGG - chr3_3:85276517-85276536 None:intergenic 20.0%
!!! TTAGTTAATTAATTTGAGAG+TGG + chr3_3:85276669-85276688 Msa0480100:intron 20.0%
!! AATCTGAATCTTTATCTAAA+TGG + chr3_3:85276693-85276712 Msa0480100:exon 20.0%
!! AACACATGAATTATATGAAA+AGG - chr3_3:85276855-85276874 None:intergenic 20.0%
!! TAAAAGAAAACATCTTTCAA+AGG - chr3_3:85276937-85276956 None:intergenic 20.0%
!! AAATTGACAATTTCAATAGA+TGG - chr3_3:85277000-85277019 None:intergenic 20.0%
!! AATGATAGCATTAGTTAATA+TGG - chr3_3:85277196-85277215 None:intergenic 20.0%
!! ATTGTAAGTGTAAATAGAAA+TGG - chr3_3:85277502-85277521 None:intergenic 20.0%
!! TGTATTTATGATATATACCT+AGG - chr3_3:85277605-85277624 None:intergenic 20.0%
!!! TTCTATTAATCAATTTGTTG+AGG - chr3_3:85278015-85278034 None:intergenic 20.0%
!! CATTAACAATACCATAAATT+AGG - chr3_3:85278178-85278197 None:intergenic 20.0%
!! ATGTTAACTTATGGAAATTT+GGG - chr3_3:85278329-85278348 None:intergenic 20.0%
!! AATGTTAACTTATGGAAATT+TGG - chr3_3:85278330-85278349 None:intergenic 20.0%
!! TTGATATCAATGTTAACTTA+TGG - chr3_3:85278338-85278357 None:intergenic 20.0%
!!! TTAGTTAATATTTTGTTGGA+AGG - chr3_3:85278455-85278474 None:intergenic 20.0%
!!! GTTGTTAGTTAATATTTTGT+TGG - chr3_3:85278459-85278478 None:intergenic 20.0%
!! ACAACATATATTCCAATTAT+TGG + chr3_3:85278474-85278493 Msa0480100:intron 20.0%
!! TTCCAATTATGTATTTACTA+AGG + chr3_3:85278526-85278545 Msa0480100:intron 20.0%
!! ATTTCAACTATACGAAATAT+TGG - chr3_3:85279166-85279185 None:intergenic 20.0%
!! AATATTTCGTATAGTTGAAA+TGG + chr3_3:85279165-85279184 Msa0480100:CDS 20.0%
!! ATATTTCGTATAGTTGAAAT+GGG + chr3_3:85279166-85279185 Msa0480100:CDS 20.0%
!! TCAACTTATTTAGACTAATT+TGG + chr3_3:85279266-85279285 Msa0480100:CDS 20.0%
!!! TTGGAAATTCTAAAATAACT+TGG - chr3_3:85279704-85279723 None:intergenic 20.0%
! AAAATAAAAATCCTCCATTG+TGG - chr3_3:85276250-85276269 None:intergenic 25.0%
!!! TATTTGTATGTTTGGTTTTC+TGG + chr3_3:85276432-85276451 Msa0480100:five_prime_UTR 25.0%
! AAGTGTTCCATTAAATATGA+TGG + chr3_3:85276487-85276506 Msa0480100:five_prime_UTR 25.0%
! AGTGTTCCATTAAATATGAT+GGG + chr3_3:85276488-85276507 Msa0480100:five_prime_UTR 25.0%
! ATGCATCAAAAACAAAATTG+AGG - chr3_3:85276615-85276634 None:intergenic 25.0%
!!! CAATTTTGTTTTTGATGCAT+AGG + chr3_3:85276615-85276634 Msa0480100:intron 25.0%
! CAAATATACTAGTATCTAAC+TGG - chr3_3:85277304-85277323 None:intergenic 25.0%
! TGGAAATAATTGGATTTGAA+TGG + chr3_3:85277334-85277353 Msa0480100:intron 25.0%
!!! TTTAGCATTGACAAAAATAG+TGG - chr3_3:85277746-85277765 None:intergenic 25.0%
!!! TTGATTAACCAGAGTATTTT+TGG + chr3_3:85277922-85277941 Msa0480100:intron 25.0%
! AAATCATACTCCCTAATTTA+TGG + chr3_3:85278164-85278183 Msa0480100:intron 25.0%
! GTATTGTTAATGTATACATG+TGG + chr3_3:85278186-85278205 Msa0480100:intron 25.0%
!! TTTGAGACAATAAAATCTGA+AGG - chr3_3:85278305-85278324 None:intergenic 25.0%
! AATTAATGCATAACCAAAAG+AGG - chr3_3:85278376-85278395 None:intergenic 25.0%
!!! TCTTTTGGTTATGCATTAAT+TGG + chr3_3:85278375-85278394 Msa0480100:CDS 25.0%
! TGCCTTAGTAAATACATAAT+TGG - chr3_3:85278531-85278550 None:intergenic 25.0%
!!! TGTATTTACTAAGGCATTTT+TGG + chr3_3:85278535-85278554 Msa0480100:intron 25.0%
! TATCAGAAGAAGACAAAATT+TGG + chr3_3:85278616-85278635 Msa0480100:CDS 25.0%
! TACTGTTGTCTATGATATAA+TGG + chr3_3:85278686-85278705 Msa0480100:CDS 25.0%
! GAAGTATAAAAAAGTAGACT+TGG + chr3_3:85278734-85278753 Msa0480100:intron 25.0%
! TTAGAGATAACTGATATCAA+TGG - chr3_3:85278782-85278801 None:intergenic 25.0%
! ACTTATTTAGACTAATTTGG+AGG + chr3_3:85279269-85279288 Msa0480100:CDS 25.0%
!! TAAACAGATTTTCATTGAAG+TGG + chr3_3:85279431-85279450 Msa0480100:CDS 25.0%
! ATTCTTACTAATTCCATGAA+TGG - chr3_3:85279518-85279537 None:intergenic 25.0%
! AACAATAGCCTATTTCAAAA+TGG + chr3_3:85279566-85279585 Msa0480100:exon 25.0%
!!! GAAATTCTAAAATAACTTGG+TGG - chr3_3:85279701-85279720 None:intergenic 25.0%
AGACACGATATTTGTATGTT+TGG + chr3_3:85276424-85276443 Msa0480100:five_prime_UTR 30.0%
! TGGTTTGAAACATGTTGATT+AGG + chr3_3:85276452-85276471 Msa0480100:five_prime_UTR 30.0%
TATTTACCATTGGATTAAGG+AGG - chr3_3:85276514-85276533 None:intergenic 30.0%
ATTACTCTCTAATAAGCACA+AGG - chr3_3:85276568-85276587 None:intergenic 30.0%
CTGAATCTTTATCTAAATGG+AGG + chr3_3:85276696-85276715 Msa0480100:exon 30.0%
TATCAAACAGTACTCAAATG+AGG + chr3_3:85276735-85276754 Msa0480100:CDS 30.0%
GAAATGAAATGAATGCATAC+CGG - chr3_3:85276791-85276810 None:intergenic 30.0%
! AAGGACATATGATTCTGAAA+TGG - chr3_3:85276836-85276855 None:intergenic 30.0%
ACGTCATGAAAGAAAATAAG+AGG - chr3_3:85277063-85277082 None:intergenic 30.0%
! TTTTCTTTCATGACGTCAAA+CGG + chr3_3:85277067-85277086 Msa0480100:intron 30.0%
GTTGAAGGAGTAATAGAATT+TGG + chr3_3:85277152-85277171 Msa0480100:intron 30.0%
AACAACACACATAATAACAG+TGG + chr3_3:85277389-85277408 Msa0480100:CDS 30.0%
TTGTTATAGATATCCAGACT+CGG + chr3_3:85277533-85277552 Msa0480100:CDS 30.0%
GAGAAATTACACTTATATGC+AGG + chr3_3:85277566-85277585 Msa0480100:CDS 30.0%
!! AGTACAATTTTAGCGTGAAT+CGG - chr3_3:85277696-85277715 None:intergenic 30.0%
!! TTTTGTGGATTGATTCAGTA+TGG + chr3_3:85277832-85277851 Msa0480100:CDS 30.0%
! TTTGTGGATTGATTCAGTAT+GGG + chr3_3:85277833-85277852 Msa0480100:CDS 30.0%
!!! TTTTAGGACCAAAAATACTC+TGG - chr3_3:85277933-85277952 None:intergenic 30.0%
TTGCAATTTCAATGCATTCA+AGG - chr3_3:85277988-85278007 None:intergenic 30.0%
!! TTGATTTGCTTCCACAAAAA+TGG + chr3_3:85278225-85278244 Msa0480100:CDS 30.0%
AAAACTTGCAATAAGCTTCA+TGG - chr3_3:85278251-85278270 None:intergenic 30.0%
TGTATGCATTATAGTCCATA+TGG + chr3_3:85279010-85279029 Msa0480100:CDS 30.0%
GTATGTTGATATAATGTTGC+AGG + chr3_3:85279129-85279148 Msa0480100:intron 30.0%
TCATTTATGAAAGATGAACG+CGG - chr3_3:85279208-85279227 None:intergenic 30.0%
!! TCAAAGAGCCAATTTTGTTT+GGG - chr3_3:85279237-85279256 None:intergenic 30.0%
GAGGACAATATTTGTGATAA+TGG + chr3_3:85279288-85279307 Msa0480100:CDS 30.0%
AACAAACAAGACTCAATAGT+TGG - chr3_3:85279465-85279484 None:intergenic 30.0%
!! CATTTAATTTGCACCACATG+TGG + chr3_3:85276199-85276218 Msa0480100:five_prime_UTR 35.0%
!! AGAATTTGTTAGACCACATG+TGG - chr3_3:85276215-85276234 None:intergenic 35.0%
! ATAGGCTCTAATTCTTGACA+GGG + chr3_3:85276633-85276652 Msa0480100:intron 35.0%
TATCTAAATGGAGGCTGAAA+AGG + chr3_3:85276705-85276724 Msa0480100:exon 35.0%
ATCTAAATGGAGGCTGAAAA+GGG + chr3_3:85276706-85276725 Msa0480100:exon 35.0%
TTTCTTTCATGACGTCAAAC+GGG + chr3_3:85277068-85277087 Msa0480100:intron 35.0%
AACACACATAATAACAGTGG+TGG + chr3_3:85277392-85277411 Msa0480100:CDS 35.0%
TATACCTAGGTAAGCATGAA+CGG - chr3_3:85277592-85277611 None:intergenic 35.0%
!! GTACAATTTTAGCGTGAATC+GGG - chr3_3:85277695-85277714 None:intergenic 35.0%
! TAGTTGCCCATTTTGTCATT+AGG + chr3_3:85277793-85277812 Msa0480100:intron 35.0%
GTTCCACCTAATGACAAAAT+GGG - chr3_3:85277802-85277821 None:intergenic 35.0%
TGTTCCACCTAATGACAAAA+TGG - chr3_3:85277803-85277822 None:intergenic 35.0%
! GGAACAATGCACATATTTTG+TGG + chr3_3:85277817-85277836 Msa0480100:CDS 35.0%
!! TATAACTTGCTCTACAAGCA+TGG + chr3_3:85277885-85277904 Msa0480100:CDS 35.0%
! CAACCTCACTCACATATTTT+AGG - chr3_3:85277949-85277968 None:intergenic 35.0%
CTAAAATATGTGAGTGAGGT+TGG + chr3_3:85277947-85277966 Msa0480100:intron 35.0%
TGTTAATGTATACATGTGGC+AGG + chr3_3:85278190-85278209 Msa0480100:intron 35.0%
GTTAATGTATACATGTGGCA+GGG + chr3_3:85278191-85278210 Msa0480100:intron 35.0%
TCAAATAATCCCTACATGCT+CGG + chr3_3:85278270-85278289 Msa0480100:CDS 35.0%
GGTTATGCATTAATTGGAAG+TGG + chr3_3:85278381-85278400 Msa0480100:CDS 35.0%
TGGAAGGATATAAGTGATGA+AGG - chr3_3:85278439-85278458 None:intergenic 35.0%
! TACTTTGGTTCCAAACAAAC+TGG - chr3_3:85278586-85278605 None:intergenic 35.0%
! AGTTTGTTTGGAACCAAAGT+AGG + chr3_3:85278585-85278604 Msa0480100:CDS 35.0%
!!! TTGGAAAGTTTTGACTGCTT+TGG + chr3_3:85278635-85278654 Msa0480100:CDS 35.0%
!!! TGGAAAGTTTTGACTGCTTT+GGG + chr3_3:85278636-85278655 Msa0480100:CDS 35.0%
!! AACTGATATCAATGGACTAG+TGG - chr3_3:85278774-85278793 None:intergenic 35.0%
CACATTAAAGTCAAATCCAC+CGG + chr3_3:85278821-85278840 Msa0480100:CDS 35.0%
ATGAGAAAGGCAAATGTGTT+GGG + chr3_3:85278855-85278874 Msa0480100:CDS 35.0%
! ACAATACTTTTCCTCCTATG+TGG + chr3_3:85278891-85278910 Msa0480100:CDS 35.0%
CATAAAATCCAAAACCAGTG+AGG - chr3_3:85278962-85278981 None:intergenic 35.0%
TGCATTATAGTCCATATGGT+AGG + chr3_3:85279014-85279033 Msa0480100:CDS 35.0%
GCGTTCATCTTTCATAAATG+AGG + chr3_3:85279207-85279226 Msa0480100:CDS 35.0%
! GTCAAAGAGCCAATTTTGTT+TGG - chr3_3:85279238-85279257 None:intergenic 35.0%
TGAGAGATGTGCATTTGTAT+CGG - chr3_3:85279403-85279422 None:intergenic 35.0%
!!! TCTAGGCTCCATTTTGAAAT+AGG - chr3_3:85279577-85279596 None:intergenic 35.0%
ACATGAGCTACAATAACTCT+AGG - chr3_3:85279594-85279613 None:intergenic 35.0%
!! ATCCTCCATTGTGGTTTGTT+AGG - chr3_3:85276241-85276260 None:intergenic 40.0%
ATCACATTCACAGAGAAGGA+GGG + chr3_3:85276334-85276353 Msa0480100:five_prime_UTR 40.0%
AGGAGGCCCATCATATTTAA+TGG - chr3_3:85276497-85276516 None:intergenic 40.0%
! CATAGGCTCTAATTCTTGAC+AGG + chr3_3:85276632-85276651 Msa0480100:intron 40.0%
ACAGTACTCAAATGAGGAAG+TGG + chr3_3:85276741-85276760 Msa0480100:CDS 40.0%
AATGAGGAAGTGGATGATGA+TGG + chr3_3:85276751-85276770 Msa0480100:CDS 40.0%
GATGGAAGAATCAAGAGAAC+CGG + chr3_3:85276769-85276788 Msa0480100:CDS 40.0%
TTCTTTCATGACGTCAAACG+GGG + chr3_3:85277069-85277088 Msa0480100:intron 40.0%
TGGATTTGAATGGATGCTTG+TGG + chr3_3:85277344-85277363 Msa0480100:intron 40.0%
ACACATAATAACAGTGGTGG+TGG + chr3_3:85277395-85277414 Msa0480100:CDS 40.0%
CACATAATAACAGTGGTGGT+GGG + chr3_3:85277396-85277415 Msa0480100:CDS 40.0%
! AGATATCCAGACTCGGTTAA+TGG + chr3_3:85277540-85277559 Msa0480100:CDS 40.0%
GTGCAATTAATCCCTCAAGT+CGG - chr3_3:85277661-85277680 None:intergenic 40.0%
GACTTGAGGGATTAATTGCA+CGG + chr3_3:85277660-85277679 Msa0480100:intron 40.0%
! TTGCCCATTTTGTCATTAGG+TGG + chr3_3:85277796-85277815 Msa0480100:intron 40.0%
GGTCCTAAAATATGTGAGTG+AGG + chr3_3:85277943-85277962 Msa0480100:intron 40.0%
! TGAGGTTGGTTGTATTACTG+TGG + chr3_3:85277961-85277980 Msa0480100:intron 40.0%
!!! AAGCTTCATGGCCATTTTTG+TGG - chr3_3:85278239-85278258 None:intergenic 40.0%
! GTTGCTGCAATTACCTCTTT+TGG + chr3_3:85278360-85278379 Msa0480100:CDS 40.0%
!!! AGGCATTTTTGGCTGTGAAT+AGG + chr3_3:85278546-85278565 Msa0480100:intron 40.0%
!!! GGCATTTTTGGCTGTGAATA+GGG + chr3_3:85278547-85278566 Msa0480100:intron 40.0%
!! TTTTGGCTGTGAATAGGGAA+AGG + chr3_3:85278552-85278571 Msa0480100:intron 40.0%
! GGAGAAAGAACCAGTTTGTT+TGG + chr3_3:85278573-85278592 Msa0480100:CDS 40.0%
TTGTCTTCTTCTGATAACCC+TGG - chr3_3:85278612-85278631 None:intergenic 40.0%
TTTCTCATCTGTGTGCTTTC+CGG - chr3_3:85278843-85278862 None:intergenic 40.0%
GATGAGAAAGGCAAATGTGT+TGG + chr3_3:85278854-85278873 Msa0480100:CDS 40.0%
TGAGAAAGGCAAATGTGTTG+GGG + chr3_3:85278856-85278875 Msa0480100:CDS 40.0%
! TTGGATTTTATGAGCCCTTC+TGG + chr3_3:85278970-85278989 Msa0480100:CDS 40.0%
! ATTTTATGAGCCCTTCTGGT+TGG + chr3_3:85278974-85278993 Msa0480100:CDS 40.0%
GAGGAACACCCAAACAAAAT+TGG + chr3_3:85279226-85279245 Msa0480100:CDS 40.0%
GCAAGAAACTCGTTGAAGAA+TGG - chr3_3:85279337-85279356 None:intergenic 40.0%
AACGAGTTTCTTGCATTGCT+TGG + chr3_3:85279343-85279362 Msa0480100:CDS 40.0%
!! TGCTTGGAGCATTTGGATTT+TGG + chr3_3:85279359-85279378 Msa0480100:CDS 40.0%
GAGAGATGTGCATTTGTATC+GGG - chr3_3:85279402-85279421 None:intergenic 40.0%
CTGCACCTAACAAACCACAA+TGG + chr3_3:85276233-85276252 Msa0480100:five_prime_UTR 45.0%
CACCTAACAAACCACAATGG+AGG + chr3_3:85276236-85276255 Msa0480100:five_prime_UTR 45.0%
GAGGATCACATTCACAGAGA+AGG + chr3_3:85276330-85276349 Msa0480100:five_prime_UTR 45.0%
GATCACATTCACAGAGAAGG+AGG + chr3_3:85276333-85276352 Msa0480100:five_prime_UTR 45.0%
TCACATTCACAGAGAAGGAG+GGG + chr3_3:85276335-85276354 Msa0480100:five_prime_UTR 45.0%
GACGTACGATATTGCTGCAA+CGG + chr3_3:85276360-85276379 Msa0480100:five_prime_UTR 45.0%
! TTGTGGGGATTGTGAGTTGA+AGG + chr3_3:85277137-85277156 Msa0480100:intron 45.0%
AATGGATGCTTGTGGTTGCA+GGG + chr3_3:85277352-85277371 Msa0480100:intron 45.0%
GCATGGGCAATTTCTCAACT+AGG + chr3_3:85277438-85277457 Msa0480100:CDS 45.0%
GGGCAATTTCTCAACTAGGA+TGG + chr3_3:85277442-85277461 Msa0480100:CDS 45.0%
TCTCAACTAGGATGGATAGC+TGG + chr3_3:85277450-85277469 Msa0480100:CDS 45.0%
! TCCCACATTTATCCGACTTG+AGG + chr3_3:85277646-85277665 Msa0480100:intron 45.0%
CCCTCAAGTCGGATAAATGT+GGG - chr3_3:85277650-85277669 None:intergenic 45.0%
! CCCACATTTATCCGACTTGA+GGG + chr3_3:85277647-85277666 Msa0480100:intron 45.0%
TCCCTCAAGTCGGATAAATG+TGG - chr3_3:85277651-85277670 None:intergenic 45.0%
ATTCAGTATGGGAAACTCGC+TGG + chr3_3:85277844-85277863 Msa0480100:CDS 45.0%
TTCAGTATGGGAAACTCGCT+GGG + chr3_3:85277845-85277864 Msa0480100:CDS 45.0%
AAACTCGCTGGGATTACAGT+GGG + chr3_3:85277856-85277875 Msa0480100:CDS 45.0%
! AATCCCTACATGCTCGGTTT+TGG + chr3_3:85278276-85278295 Msa0480100:CDS 45.0%
! ATCCCTACATGCTCGGTTTT+GGG + chr3_3:85278277-85278296 Msa0480100:CDS 45.0%
ATCCCAAAACCGAGCATGTA+GGG - chr3_3:85278282-85278301 None:intergenic 45.0%
! TTTGGAACCAAAGTAGGACC+AGG + chr3_3:85278591-85278610 Msa0480100:CDS 45.0%
TTGGAACCAAAGTAGGACCA+GGG + chr3_3:85278592-85278611 Msa0480100:CDS 45.0%
TGATAACCCTGGTCCTACTT+TGG - chr3_3:85278601-85278620 None:intergenic 45.0%
! GGAAAGCACACAGATGAGAA+AGG + chr3_3:85278842-85278861 Msa0480100:CDS 45.0%
TTCCTCCTATGTGGTTCACT+TGG + chr3_3:85278900-85278919 Msa0480100:CDS 45.0%
CATAGCCAAGTGAACCACAT+AGG - chr3_3:85278908-85278927 None:intergenic 45.0%
TCACTTGGCTATGCTGCATT+TGG + chr3_3:85278915-85278934 Msa0480100:CDS 45.0%
! CATTTGGTGATCACACTCCA+GGG + chr3_3:85278931-85278950 Msa0480100:CDS 45.0%
CCTGATATGCTCCTACCATA+TGG - chr3_3:85279028-85279047 None:intergenic 45.0%
! CCATATGGTAGGAGCATATC+AGG + chr3_3:85279025-85279044 Msa0480100:CDS 45.0%
AAATGGGTGCCAACATGATG+TGG + chr3_3:85279182-85279201 Msa0480100:CDS 45.0%
AATGGCCACAGTTATTGCCA+TGG + chr3_3:85279306-85279325 Msa0480100:CDS 45.0%
CATTGCCATGGCAATAACTG+TGG - chr3_3:85279314-85279333 None:intergenic 45.0%
GTTGAAGAATGGCATTGCCA+TGG - chr3_3:85279326-85279345 None:intergenic 45.0%
! CTTGCATTGCTTGGAGCATT+TGG + chr3_3:85279352-85279371 Msa0480100:CDS 45.0%
ATCGGGAAGAAGACAATGAG+TGG - chr3_3:85279385-85279404 None:intergenic 45.0%
!!! TCTTTTAAAATAATTTATTT+TGG + chr3_3:85276950-85276969 Msa0480100:intron 5.0%
CACATTCACAGAGAAGGAGG+GGG + chr3_3:85276336-85276355 Msa0480100:five_prime_UTR 50.0%
GATGGGCCTCCTTAATCCAA+TGG + chr3_3:85276505-85276524 Msa0480100:five_prime_UTR 50.0%
GAATGGATGCTTGTGGTTGC+AGG + chr3_3:85277351-85277370 Msa0480100:intron 50.0%
!! AGGAGTGTTGGCTCTAGCAT+GGG + chr3_3:85277422-85277441 Msa0480100:CDS 50.0%
CTCTTGCCATTAACCGAGTC+TGG - chr3_3:85277549-85277568 None:intergenic 50.0%
GAAACTCGCTGGGATTACAG+TGG + chr3_3:85277855-85277874 Msa0480100:CDS 50.0%
GATCCCAAAACCGAGCATGT+AGG - chr3_3:85278283-85278302 None:intergenic 50.0%
TGGACTCTCTCTAGCAGTTG+TGG + chr3_3:85278401-85278420 Msa0480100:CDS 50.0%
TCTCTAGCAGTTGTGGTGTC+AGG + chr3_3:85278408-85278427 Msa0480100:CDS 50.0%
AGCCAAGTGAACCACATAGG+AGG - chr3_3:85278905-85278924 None:intergenic 50.0%
! GCATTTGGTGATCACACTCC+AGG + chr3_3:85278930-85278949 Msa0480100:CDS 50.0%
AAACCAGTGAGGATGTTCCC+TGG - chr3_3:85278951-85278970 None:intergenic 50.0%
!!! GGGAACATCCTCACTGGTTT+TGG + chr3_3:85278951-85278970 Msa0480100:CDS 50.0%
CCCAAAGCAACCAACCAGAA+GGG - chr3_3:85278987-85279006 None:intergenic 50.0%
! CCCTTCTGGTTGGTTGCTTT+GGG + chr3_3:85278984-85279003 Msa0480100:CDS 50.0%
! CCTTCTGGTTGGTTGCTTTG+GGG + chr3_3:85278985-85279004 Msa0480100:CDS 50.0%
GTTTCAGTAGCTGCTGCAGT+TGG + chr3_3:85279490-85279509 Msa0480100:CDS 50.0%
! GCTGCAGTTGGTTCCATTCA+TGG + chr3_3:85279502-85279521 Msa0480100:CDS 50.0%
GGTTGCAGGGAACGTGTTGA+CGG + chr3_3:85277365-85277384 Msa0480100:intron 55.0%
!! ATAACAGTGGTGGTGGGTGC+AGG + chr3_3:85277402-85277421 Msa0480100:CDS 55.0%
!! CAGGAGTGTTGGCTCTAGCA+TGG + chr3_3:85277421-85277440 Msa0480100:CDS 55.0%
CAGGCCGTTCATGCTTACCT+AGG + chr3_3:85277585-85277604 Msa0480100:CDS 55.0%
CTCATCTGTGTGCTTTCCGG+TGG - chr3_3:85278840-85278859 None:intergenic 55.0%
ACTCCAGGGAACATCCTCAC+TGG + chr3_3:85278945-85278964 Msa0480100:CDS 55.0%
! GCCCTTCTGGTTGGTTGCTT+TGG + chr3_3:85278983-85279002 Msa0480100:CDS 55.0%
CCCCAAAGCAACCAACCAGA+AGG - chr3_3:85278988-85279007 None:intergenic 55.0%
TGAACGCGGCCACATCATGT+TGG - chr3_3:85279194-85279213 None:intergenic 55.0%
!! GGTGGTGGGTGCAGGAGTGT+TGG + chr3_3:85277410-85277429 Msa0480100:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 85276183 85279735 85276183 ID=Msa0480100;Name=Msa0480100
chr3_3 mRNA 85276183 85279735 85276183 ID=Msa0480100-mRNA-1;Parent=Msa0480100;Name=Msa0480100-mRNA-1;_AED=0.12;_eAED=0.12;_QI=403|1|1|1|0.75|0.66|9|162|471
chr3_3 exon 85276183 85276526 85276183 ID=Msa0480100-mRNA-1:exon:24416;Parent=Msa0480100-mRNA-1
chr3_3 exon 85276618 85276649 85276618 ID=Msa0480100-mRNA-1:exon:24417;Parent=Msa0480100-mRNA-1
chr3_3 exon 85276685 85276790 85276685 ID=Msa0480100-mRNA-1:exon:24418;Parent=Msa0480100-mRNA-1
chr3_3 exon 85277373 85277606 85277373 ID=Msa0480100-mRNA-1:exon:24419;Parent=Msa0480100-mRNA-1
chr3_3 exon 85277815 85277908 85277815 ID=Msa0480100-mRNA-1:exon:24420;Parent=Msa0480100-mRNA-1
chr3_3 exon 85278212 85278429 85278212 ID=Msa0480100-mRNA-1:exon:24421;Parent=Msa0480100-mRNA-1
chr3_3 exon 85278568 85278707 85278568 ID=Msa0480100-mRNA-1:exon:24422;Parent=Msa0480100-mRNA-1
chr3_3 exon 85278819 85279046 85278819 ID=Msa0480100-mRNA-1:exon:24423;Parent=Msa0480100-mRNA-1
chr3_3 exon 85279151 85279735 85279151 ID=Msa0480100-mRNA-1:exon:24424;Parent=Msa0480100-mRNA-1
chr3_3 five_prime_UTR 85276183 85276526 85276183 ID=Msa0480100-mRNA-1:five_prime_utr;Parent=Msa0480100-mRNA-1
chr3_3 five_prime_UTR 85276618 85276649 85276618 ID=Msa0480100-mRNA-1:five_prime_utr;Parent=Msa0480100-mRNA-1
chr3_3 five_prime_UTR 85276685 85276711 85276685 ID=Msa0480100-mRNA-1:five_prime_utr;Parent=Msa0480100-mRNA-1
chr3_3 CDS 85276712 85276790 85276712 ID=Msa0480100-mRNA-1:cds;Parent=Msa0480100-mRNA-1
chr3_3 CDS 85277373 85277606 85277373 ID=Msa0480100-mRNA-1:cds;Parent=Msa0480100-mRNA-1
chr3_3 CDS 85277815 85277908 85277815 ID=Msa0480100-mRNA-1:cds;Parent=Msa0480100-mRNA-1
chr3_3 CDS 85278212 85278429 85278212 ID=Msa0480100-mRNA-1:cds;Parent=Msa0480100-mRNA-1
chr3_3 CDS 85278568 85278707 85278568 ID=Msa0480100-mRNA-1:cds;Parent=Msa0480100-mRNA-1
chr3_3 CDS 85278819 85279046 85278819 ID=Msa0480100-mRNA-1:cds;Parent=Msa0480100-mRNA-1
chr3_3 CDS 85279151 85279573 85279151 ID=Msa0480100-mRNA-1:cds;Parent=Msa0480100-mRNA-1
chr3_3 three_prime_UTR 85279574 85279735 85279574 ID=Msa0480100-mRNA-1:three_prime_utr;Parent=Msa0480100-mRNA-1
Gene Sequence

>Msa0480100

ATGGAGGCTGAAAAGGGTGTGTCTATCAAACAGTACTCAAATGAGGAAGTGGATGATGATGGAAGAATCAAGAGAACCGGGAACGTGTTGACGGCAACAACACACATAATAACAGTGGTGGTGGGTGCAGGAGTGTTGGCTCTAGCATGGGCAATTTCTCAACTAGGATGGATAGCTGGCATACTTGTTATGATCACATTTTCATCCATTTCTATTTACACTTACAATCTTATAGCTGATTGTTATAGATATCCAGACTCGGTTAATGGCAAGAGAAATTACACTTATATGCAGGCCGTTCATGCTTACCTAGGTGGAACAATGCACATATTTTGTGGATTGATTCAGTATGGGAAACTCGCTGGGATTACAGTGGGCTACACTATAACTTGCTCTACAAGCATGGTGGCTATAAAGAAATTGATTTGCTTCCACAAAAATGGCCATGAAGCTTATTGCAAGTTTTCAAATAATCCCTACATGCTCGGTTTTGGGATCCTTCAGATTTTATTGTCTCAAATCCCAAATTTCCATAAGTTAACATTGATATCAACTGTTGCTGCAATTACCTCTTTTGGTTATGCATTAATTGGAAGTGGACTCTCTCTAGCAGTTGTGGTGTCAGGGAAAGGAGAAAGAACCAGTTTGTTTGGAACCAAAGTAGGACCAGGGTTATCAGAAGAAGACAAAATTTGGAAAGTTTTGACTGCTTTGGGAAACATTGCACTTGCTTGCTCTTATGCTACTGTTGTCTATGATATAATGGACACATTAAAGTCAAATCCACCGGAAAGCACACAGATGAGAAAGGCAAATGTGTTGGGGATCACTACAATGACAATACTTTTCCTCCTATGTGGTTCACTTGGCTATGCTGCATTTGGTGATCACACTCCAGGGAACATCCTCACTGGTTTTGGATTTTATGAGCCCTTCTGGTTGGTTGCTTTGGGGAATGTATGCATTATAGTCCATATGGTAGGAGCATATCAGGTGTTAGCTCAGCCAATATTTCGTATAGTTGAAATGGGTGCCAACATGATGTGGCCGCGTTCATCTTTCATAAATGAGGAACACCCAAACAAAATTGGCTCTTTGACATTCAACATCAACTTATTTAGACTAATTTGGAGGACAATATTTGTGATAATGGCCACAGTTATTGCCATGGCAATGCCATTCTTCAACGAGTTTCTTGCATTGCTTGGAGCATTTGGATTTTGGCCACTCATTGTCTTCTTCCCGATACAAATGCACATCTCTCAGAAACATATAAACAGATTTTCATTGAAGTGGTGTGTGCTCCAACTATTGAGTCTTGTTTGTTTTTTTGTTTCAGTAGCTGCTGCAGTTGGTTCCATTCATGGAATTAGTAAGAATATCACAAAATACAAACTCTTTATGTATAAACAATAG

Protein sequence

>Msa0480100

MEAEKGVSIKQYSNEEVDDDGRIKRTGNVLTATTHIITVVVGAGVLALAWAISQLGWIAGILVMITFSSISIYTYNLIADCYRYPDSVNGKRNYTYMQAVHAYLGGTMHIFCGLIQYGKLAGITVGYTITCSTSMVAIKKLICFHKNGHEAYCKFSNNPYMLGFGILQILLSQIPNFHKLTLISTVAAITSFGYALIGSGLSLAVVVSGKGERTSLFGTKVGPGLSEEDKIWKVLTALGNIALACSYATVVYDIMDTLKSNPPESTQMRKANVLGITTMTILFLLCGSLGYAAFGDHTPGNILTGFGFYEPFWLVALGNVCIIVHMVGAYQVLAQPIFRIVEMGANMMWPRSSFINEEHPNKIGSLTFNINLFRLIWRTIFVIMATVIAMAMPFFNEFLALLGAFGFWPLIVFFPIQMHISQKHINRFSLKWCVLQLLSLVCFFVSVAAAVGSIHGISKNITKYKLFMYKQ*