AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368210 MtrunA17_Chr3g0111011 95.588 272 4 1 1 272 1 264 0.0 525
Msa0368210 MtrunA17_Chr1g0212841 57.798 218 84 1 55 272 3 212 2.78e-90 266
Msa0368210 MtrunA17_Chr1g0181861 26.066 211 137 7 70 267 26 230 6.65e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368210 AT5G16710.1 62.681 276 81 4 1 272 1 258 1.22e-121 348
Msa0368210 AT1G75270.1 59.908 217 78 2 55 270 3 211 1.24e-92 273
Msa0368210 AT1G19570.1 55.760 217 87 2 55 270 3 211 2.79e-83 249
Msa0368210 AT1G19550.1 47.531 162 62 1 109 270 13 151 1.30e-45 150
Msa0368210 AT5G02790.1 28.431 204 123 8 81 269 38 233 4.12e-12 64.7

Find 86 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTAAATCAACCAATTT+TGG 0.139790 3_1:+64551175 None:intergenic
AGCAACACCCTTTGACTAAA+AGG 0.218949 3_1:+64551229 None:intergenic
TGCTTTACATGCAGCCTTCA+TGG 0.267922 3_1:+64548529 None:intergenic
TTTACCTTATGAGCCAAAAT+TGG 0.268108 3_1:-64551188 Msa0368210:CDS
CACACAATTATTTCTTATAT+AGG 0.269542 3_1:+64548451 None:intergenic
CTGCCCTTGGTCTTAATAAA+AGG 0.289218 3_1:-64548407 Msa0368210:three_prime_UTR
TGCTTGTTCGGTTCCGTCAT+TGG 0.307313 3_1:+64550278 None:intergenic
CTAGTTGAAACGGCGTAGTT+TGG 0.314495 3_1:+64553049 None:intergenic
CTGAAGACATTGATACTCTA+AGG 0.314821 3_1:+64552996 None:intergenic
ACACAATTATTTCTTATATA+GGG 0.319332 3_1:+64548452 None:intergenic
CTTTCCATCAAAATTTATTA+CGG 0.320003 3_1:+64551006 None:intergenic
TTACAGTCTCCAATCTTGTT+AGG 0.323971 3_1:+64552923 None:intergenic
CTTTGGGACATTATAAGAAA+TGG 0.339739 3_1:-64549610 Msa0368210:CDS
TATCATCAACCCTCTACTTT+AGG 0.351222 3_1:+64548754 None:intergenic
TACCATTTGGAGATTGCTTT+GGG 0.358598 3_1:-64549626 Msa0368210:CDS
GCCACATAATGTAACATGTT+AGG 0.364959 3_1:-64548558 Msa0368210:three_prime_UTR
TTCATTTAGTAATGCTTGTT+CGG 0.380196 3_1:+64550266 None:intergenic
GGACAAGAAGATCACCATTC+TGG 0.384402 3_1:+64551148 None:intergenic
CTTACCACTCCTAACAAGAT+TGG 0.386618 3_1:-64552932 Msa0368210:CDS
TACCTTCAGGACTGATTTCA+AGG 0.389717 3_1:+64551035 None:intergenic
TTTCCATCAAAATTTATTAC+GGG 0.394965 3_1:+64551007 None:intergenic
GAAATAATTGTGTGACGCTA+TGG 0.395382 3_1:-64548442 Msa0368210:three_prime_UTR
AATACTGAAACTGTTGTTGA+AGG 0.397717 3_1:+64553024 None:intergenic
GCTTGTTCGGTTCCGTCATT+GGG 0.399278 3_1:+64550279 None:intergenic
ATACCATTTGGAGATTGCTT+TGG 0.401508 3_1:-64549627 Msa0368210:CDS
AGTTCCTCCTTCTGAGCCAT+TGG 0.415341 3_1:-64552975 Msa0368210:CDS
CTTCAAGTAAGACTTCAAAA+AGG 0.430278 3_1:+64549568 None:intergenic
TTCCTTGAGGTAATCGTTGA+AGG 0.431943 3_1:+64550236 None:intergenic
GCTTTCTTTACCCTCAATAT+CGG 0.432392 3_1:-64548382 Msa0368210:three_prime_UTR
ATAGCTTTGGTCCTAGTGAT+AGG 0.433953 3_1:+64549648 None:intergenic
ATTACGGGAACTTTACCTTC+AGG 0.438595 3_1:+64551022 None:intergenic
TCAGGTGGTGTCACCAATGG+TGG 0.440607 3_1:+64550929 None:intergenic
ATCTCCAAATGGTATAGCTT+TGG 0.443085 3_1:+64549635 None:intergenic
GGGTGATGTGCCACTGCCCT+TGG 0.444600 3_1:-64548420 Msa0368210:three_prime_UTR
CCCTAACATGTTACATTATG+TGG 0.446518 3_1:+64548557 None:intergenic
AGGACCAAAGCTATACCATT+TGG 0.449238 3_1:-64549639 Msa0368210:CDS
CCACATAATGTAACATGTTA+GGG 0.452835 3_1:-64548557 Msa0368210:three_prime_UTR
GGTGTCACCAATGGTGGGCT+AGG 0.458979 3_1:+64550935 None:intergenic
ACGGTAACGAAGGTGGTTAA+CGG 0.463252 3_1:+64553072 None:intergenic
ATTGGTGACACCACCTGAAA+AGG 0.468553 3_1:-64550924 Msa0368210:CDS
AAAGAAAAGAGTAGAATGAC+TGG 0.472781 3_1:+64548730 None:intergenic
TCATTTGCTTGAGTCTCTGA+AGG 0.487636 3_1:-64548708 Msa0368210:three_prime_UTR
ATGTCTTTCCCATTGACAAA+AGG 0.494992 3_1:+64549683 None:intergenic
AGATTTAATCACACAAACAT+TGG 0.497857 3_1:-64550969 Msa0368210:CDS
GTACATTTGAACCGATATTG+AGG 0.515382 3_1:+64548371 None:intergenic
GCAACACCCTTTGACTAAAA+GGG 0.519550 3_1:+64551230 None:intergenic
TTTATTAAGACCAAGGGCAG+TGG 0.524978 3_1:+64548410 None:intergenic
GTCCCAAAGCAATCTCCAAA+TGG 0.525825 3_1:+64549624 None:intergenic
GTTGAAGGAGCTAGTTGAAA+CGG 0.529081 3_1:+64553039 None:intergenic
CAGCCGGAGGATGTCATTGA+AGG 0.529861 3_1:-64548784 Msa0368210:CDS
GCAACTTCCAATGGCTCAGA+AGG 0.530234 3_1:+64552968 None:intergenic
GCTTTAACAGCAACTTCCAA+TGG 0.538010 3_1:+64552959 None:intergenic
TCAAAGGGTGTTGCTGACAC+TGG 0.541170 3_1:-64551221 Msa0368210:CDS
ATTTAAGAAACAAACCAGAA+TGG 0.544999 3_1:-64551162 Msa0368210:intron
TACATTTGAACCGATATTGA+GGG 0.545820 3_1:+64548372 None:intergenic
TGAATTCTAACGGTGGACAT+TGG 0.546517 3_1:+64553121 None:intergenic
CAGGTGGTGTCACCAATGGT+GGG 0.551034 3_1:+64550930 None:intergenic
TTGAAACGGCGTAGTTTGGA+CGG 0.553042 3_1:+64553053 None:intergenic
CATTAACACACGTGCACAGC+CGG 0.557161 3_1:-64548800 Msa0368210:CDS
AAATAATTGTGTGACGCTAT+GGG 0.557812 3_1:-64548441 Msa0368210:three_prime_UTR
GAAGTATCCTAGCCCACCAT+TGG 0.558980 3_1:-64550942 Msa0368210:CDS
TGAAGACATTGATACTCTAA+GGG 0.561246 3_1:+64552997 None:intergenic
TTTAATCACACAAACATTGG+AGG 0.562440 3_1:-64550966 Msa0368210:CDS
CAACCTTCAATGACATCCTC+CGG 0.565403 3_1:+64548781 None:intergenic
TTCCTTGAAATCAGTCCTGA+AGG 0.565919 3_1:-64551037 Msa0368210:CDS
CGGAGGATGTCATTGAAGGT+TGG 0.572766 3_1:-64548780 Msa0368210:CDS
TGCTGAAACTTGAATTCTAA+CGG 0.573659 3_1:+64553111 None:intergenic
GTCTCCAATCTTGTTAGGAG+TGG 0.575745 3_1:+64552928 None:intergenic
ACGAAGGTGGTTAACGGTGG+CGG 0.577042 3_1:+64553078 None:intergenic
ATGTTAGGGAGAGGCCATGA+AGG 0.586006 3_1:-64548543 Msa0368210:three_prime_UTR
TAATGTAACATGTTAGGGAG+AGG 0.588708 3_1:-64548552 Msa0368210:three_prime_UTR
CTCCTTCAACGATTACCTCA+AGG 0.601777 3_1:-64550238 Msa0368210:CDS
AGTTTGGACGGTAACGAAGG+TGG 0.608421 3_1:+64553065 None:intergenic
ACTTCCAATGGCTCAGAAGG+AGG 0.609075 3_1:+64552971 None:intergenic
AGGTTGGCGTCCTAAAGTAG+AGG 0.619348 3_1:-64548764 Msa0368210:CDS
AAGAGCAAAGATCCCAATGA+CGG 0.635929 3_1:-64550291 Msa0368210:CDS
GGTTGGCGTCCTAAAGTAGA+GGG 0.649275 3_1:-64548763 Msa0368210:CDS
AAGGGTGTTGCTGACACTGG+AGG 0.656281 3_1:-64551218 Msa0368210:CDS
TCTGCGGCTGACCTATCACT+AGG 0.671764 3_1:-64549659 Msa0368210:CDS
AATAATTGTGTGACGCTATG+GGG 0.679169 3_1:-64548440 Msa0368210:three_prime_UTR
CGTAGTTTGGACGGTAACGA+AGG 0.683732 3_1:+64553062 None:intergenic
GAAGACATTGATACTCTAAG+GGG 0.685434 3_1:+64552998 None:intergenic
TAACACACGTGCACAGCCGG+AGG 0.694276 3_1:-64548797 Msa0368210:CDS
CAATGGGAAAGACATATCTG+CGG 0.722193 3_1:-64549675 Msa0368210:CDS
GTAACGAAGGTGGTTAACGG+TGG 0.742876 3_1:+64553075 None:intergenic
TGAAACTTGAATTCTAACGG+TGG 0.756125 3_1:+64553114 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGATATATATTATTATCATT+TGG - chr3_1:64551473-64551492 Msa0368210:intron 10.0%
!! TTATATAAATAAAAATGTGT+TGG + chr3_1:64551615-64551634 None:intergenic 10.0%
!!! TTTTTATTTATATAACTTTG+AGG - chr3_1:64551620-64551639 Msa0368210:intron 10.0%
!!! AAGCAAAAAAAACTATTTTT+AGG - chr3_1:64549205-64549224 Msa0368210:intron 15.0%
!!! TTTTAAACTTTCAGTATTTT+AGG - chr3_1:64551273-64551292 Msa0368210:intron 15.0%
!! TTGTAAACTTTATGAATAAT+TGG - chr3_1:64551508-64551527 Msa0368210:intron 15.0%
!! TGAATATATGAAGAAAAAAA+AGG + chr3_1:64552182-64552201 None:intergenic 15.0%
!!! ACACAATTATTTCTTATATA+GGG + chr3_1:64552982-64553001 None:intergenic 15.0%
!!! ATACACATTTGATAAATTTT+CGG + chr3_1:64553090-64553109 None:intergenic 15.0%
!! AATAACAAAAACCATGAAAA+GGG + chr3_1:64548543-64548562 None:intergenic 20.0%
!! AAATAACAAAAACCATGAAA+AGG + chr3_1:64548544-64548563 None:intergenic 20.0%
!!! CATAAGTTTTGAAAATGTTT+AGG - chr3_1:64548809-64548828 Msa0368210:CDS 20.0%
!! TATAATAGACCAAATACATT+AGG + chr3_1:64549242-64549261 None:intergenic 20.0%
!! CATTGAATACTTAATGTATT+TGG + chr3_1:64549269-64549288 None:intergenic 20.0%
!!! TTTTTGCTTATAAATATGAC+TGG - chr3_1:64549304-64549323 Msa0368210:intron 20.0%
!! TAATTCAGAATTTGATCAAA+AGG + chr3_1:64549637-64549656 None:intergenic 20.0%
!! AAATCAAAGAACAAAGATAA+AGG + chr3_1:64550023-64550042 None:intergenic 20.0%
!!! TTTGTTCTTTGATTTAATTG+TGG - chr3_1:64550028-64550047 Msa0368210:intron 20.0%
!!! TTTCTTAAATCAACCAATTT+TGG + chr3_1:64550259-64550278 None:intergenic 20.0%
!! CAACAAAACAAATTATTACA+AGG + chr3_1:64550367-64550386 None:intergenic 20.0%
!!! CTTGTAATAATTTGTTTTGT+TGG - chr3_1:64550365-64550384 Msa0368210:intron 20.0%
!! TTTCCATCAAAATTTATTAC+GGG + chr3_1:64550427-64550446 None:intergenic 20.0%
!! CTTTCCATCAAAATTTATTA+CGG + chr3_1:64550428-64550447 None:intergenic 20.0%
!!! TAATAAATTTTGATGGAAAG+TGG - chr3_1:64550428-64550447 Msa0368210:intron 20.0%
!!! AATAAATTTTGATGGAAAGT+GGG - chr3_1:64550429-64550448 Msa0368210:intron 20.0%
!!! TTGTAATTTTGATATACTCA+GGG + chr3_1:64550787-64550806 None:intergenic 20.0%
!!! TTTGTAATTTTGATATACTC+AGG + chr3_1:64550788-64550807 None:intergenic 20.0%
!! AGTAAGTAAAAATACATTCA+AGG + chr3_1:64550816-64550835 None:intergenic 20.0%
!! TTTGTAATTTCAATGTATTC+AGG - chr3_1:64550949-64550968 Msa0368210:CDS 20.0%
!! GTAAACATTAAAGAACAAAA+AGG + chr3_1:64551027-64551046 None:intergenic 20.0%
!! TTTGTTCTTTAATGTTTACA+TGG - chr3_1:64551028-64551047 Msa0368210:CDS 20.0%
!!! AAGATCTTTTCTACATTTAT+TGG - chr3_1:64551110-64551129 Msa0368210:intron 20.0%
!!! GACACATTTTATAAGAAAAA+AGG + chr3_1:64551698-64551717 None:intergenic 20.0%
!! AAGAAAAAAAAGGTTTACAA+AGG + chr3_1:64552172-64552191 None:intergenic 20.0%
!!! TTTTCTTCATATATTCAAAG+AGG - chr3_1:64552185-64552204 Msa0368210:intron 20.0%
!! AAAGTTCAAAATTGCAAAAA+CGG + chr3_1:64552226-64552245 None:intergenic 20.0%
!!! TTTGCTATATCTAATAATGT+TGG - chr3_1:64552576-64552595 Msa0368210:intron 20.0%
!!! CATAATTGTTATTTTGTAGT+TGG - chr3_1:64552851-64552870 Msa0368210:intron 20.0%
!!! CACACAATTATTTCTTATAT+AGG + chr3_1:64552983-64553002 None:intergenic 20.0%
!! AAAAATTCTTACCCTTTTCA+TGG - chr3_1:64548529-64548548 Msa0368210:three_prime_UTR 25.0%
!!! TTGAGCTTGTTTTTTTGTAT+TGG - chr3_1:64548570-64548589 Msa0368210:intron 25.0%
!! ATTAGTATTTGAGACATTGA+TGG - chr3_1:64548613-64548632 Msa0368210:intron 25.0%
! GAAATTCAAATCACAAACAA+TGG - chr3_1:64549045-64549064 Msa0368210:intron 25.0%
! TATACTACTTGAGAGAATTA+AGG - chr3_1:64549143-64549162 Msa0368210:intron 25.0%
! TGATCAAATTCTGAATTACT+AGG - chr3_1:64549639-64549658 Msa0368210:CDS 25.0%
!! TCTAAAATTTAGCTAGTAAC+TGG + chr3_1:64549711-64549730 None:intergenic 25.0%
! ATTTAAGAAACAAACCAGAA+TGG - chr3_1:64550269-64550288 Msa0368210:CDS 25.0%
!!! ATAATTTGTTTTGTTGGTTC+AGG - chr3_1:64550371-64550390 Msa0368210:intron 25.0%
! AGATTTAATCACACAAACAT+TGG - chr3_1:64550462-64550481 Msa0368210:intron 25.0%
! TTATAGATTTCCTCATCATT+TGG - chr3_1:64550550-64550569 Msa0368210:intron 25.0%
!!! ATATCTAGTTTTCTTGTACA+TGG - chr3_1:64550590-64550609 Msa0368210:intron 25.0%
!!! TGAGTTTTTTGAAAAATGCA+CGG - chr3_1:64550614-64550633 Msa0368210:intron 25.0%
! ACACATGAAAACATCAATTA+TGG + chr3_1:64551071-64551090 None:intergenic 25.0%
! TTCATTTAGTAATGCTTGTT+CGG + chr3_1:64551168-64551187 None:intergenic 25.0%
! TGATGTTGCAAAACATTAAA+CGG - chr3_1:64551410-64551429 Msa0368210:intron 25.0%
! AAATTATAGACAAATCCAGA+AGG + chr3_1:64551667-64551686 None:intergenic 25.0%
! ATGAAACTGCATCATAAATA+CGG + chr3_1:64551988-64552007 None:intergenic 25.0%
! CGAATAGTTTACAAAATTTG+CGG - chr3_1:64552013-64552032 Msa0368210:intron 25.0%
! AGTGAAAATGACTTATCAAT+AGG - chr3_1:64552082-64552101 Msa0368210:intron 25.0%
! GTGAAAATGACTTATCAATA+GGG - chr3_1:64552083-64552102 Msa0368210:intron 25.0%
!!! GCTCTAAATTCAAAAGTTTT+TGG - chr3_1:64552133-64552152 Msa0368210:intron 25.0%
! AAGTTCAAAATTGCAAAAAC+GGG + chr3_1:64552225-64552244 None:intergenic 25.0%
! AAGTAAAGTAACATAGACAA+TGG + chr3_1:64552512-64552531 None:intergenic 25.0%
! AATATATACTCAACTAGAGT+CGG + chr3_1:64552755-64552774 None:intergenic 25.0%
! GCTAAATTACATAACGATAT+TGG + chr3_1:64552806-64552825 None:intergenic 25.0%
!! AACAATTATGCTTTAGTTCA+TGG + chr3_1:64552841-64552860 None:intergenic 25.0%
TGCTGAAACTTGAATTCTAA+CGG + chr3_1:64548323-64548342 None:intergenic 30.0%
AATACTGAAACTGTTGTTGA+AGG + chr3_1:64548410-64548429 None:intergenic 30.0%
TGAAGACATTGATACTCTAA+GGG + chr3_1:64548437-64548456 None:intergenic 30.0%
! TTTGAGACATTGATGGTATT+TGG - chr3_1:64548620-64548639 Msa0368210:intron 30.0%
TGGTATTTGGTAGAAAGAAT+AGG - chr3_1:64548633-64548652 Msa0368210:intron 30.0%
GGTATTTGGTAGAAAGAATA+GGG - chr3_1:64548634-64548653 Msa0368210:intron 30.0%
GTTATGAATAATCTGTTGCA+TGG - chr3_1:64548664-64548683 Msa0368210:intron 30.0%
GATTACCTTGAATTATGTCA+AGG - chr3_1:64548747-64548766 Msa0368210:exon 30.0%
AATGTTTAGGAGTAAAGATG+AGG - chr3_1:64548822-64548841 Msa0368210:CDS 30.0%
ATGTTTAGGAGTAAAGATGA+GGG - chr3_1:64548823-64548842 Msa0368210:CDS 30.0%
GGATATCAGTATCATCATAA+GGG + chr3_1:64548967-64548986 None:intergenic 30.0%
AGGATATCAGTATCATCATA+AGG + chr3_1:64548968-64548987 None:intergenic 30.0%
TAAAATCAAATCCTACCCTT+GGG + chr3_1:64548994-64549013 None:intergenic 30.0%
ATAAAATCAAATCCTACCCT+TGG + chr3_1:64548995-64549014 None:intergenic 30.0%
AATTCTCTCAAGTAGTATAC+AGG + chr3_1:64549142-64549161 None:intergenic 30.0%
CATTGAATGCCTAATGTATT+TGG - chr3_1:64549230-64549249 Msa0368210:intron 30.0%
TTGCTTATAAATATGACTGG+AGG - chr3_1:64549307-64549326 Msa0368210:intron 30.0%
GGAGGTAGTATATAATACTA+AGG - chr3_1:64549325-64549344 Msa0368210:intron 30.0%
TACTGTTCATGTATTGAGTA+CGG + chr3_1:64549532-64549551 None:intergenic 30.0%
ATACATGAACAGTAACCAAA+TGG - chr3_1:64549538-64549557 Msa0368210:intron 30.0%
ATCAAAAGGTAAGTAAAGTC+TGG + chr3_1:64549623-64549642 None:intergenic 30.0%
TAATAATTCCTAACAACCCA+AGG + chr3_1:64549835-64549854 None:intergenic 30.0%
TGTTAGGAATTATTAGAGGA+AGG - chr3_1:64549840-64549859 Msa0368210:intron 30.0%
AGAGGAAAGGAGAAAAAATT+GGG - chr3_1:64549914-64549933 Msa0368210:intron 30.0%
AAAAATTGGGGACAATTTCT+TGG - chr3_1:64549927-64549946 Msa0368210:intron 30.0%
! TAGGTTGCTAGATTTACTTT+TGG - chr3_1:64550065-64550084 Msa0368210:intron 30.0%
ATGTGTGGAGCAAATATTAA+AGG + chr3_1:64550129-64550148 None:intergenic 30.0%
CTGAATAGACAATTCAACAA+AGG + chr3_1:64550180-64550199 None:intergenic 30.0%
CTTTGTTGAATTGTCTATTC+AGG - chr3_1:64550178-64550197 Msa0368210:intron 30.0%
TTTACCTTATGAGCCAAAAT+TGG - chr3_1:64550243-64550262 Msa0368210:CDS 30.0%
!! TAGAAAAAGTTGATGACTTG+TGG + chr3_1:64550325-64550344 None:intergenic 30.0%
! GTTCCCGTAATAAATTTTGA+TGG - chr3_1:64550421-64550440 Msa0368210:intron 30.0%
TTTAATCACACAAACATTGG+AGG - chr3_1:64550465-64550484 Msa0368210:intron 30.0%
TTTCGTTAGTCAGTAAGTAT+GGG - chr3_1:64550890-64550909 Msa0368210:intron 30.0%
!! TCATGTGTTTTTGTCTATAG+TGG - chr3_1:64551083-64551102 Msa0368210:intron 30.0%
!! CATGTGTTTTTGTCTATAGT+GGG - chr3_1:64551084-64551103 Msa0368210:intron 30.0%
!!! TTTCCCTTCTATTTTTGTCT+CGG - chr3_1:64551231-64551250 Msa0368210:CDS 30.0%
! TTACATCTTTTCCTGCATTA+TGG - chr3_1:64551318-64551337 Msa0368210:intron 30.0%
GATGTTGCAAAACATTAAAC+GGG - chr3_1:64551411-64551430 Msa0368210:intron 30.0%
ATGTTGCAAAACATTAAACG+GGG - chr3_1:64551412-64551431 Msa0368210:intron 30.0%
!!! TGCAAATTTTTTCTTCTCAC+AGG - chr3_1:64551723-64551742 Msa0368210:intron 30.0%
!!! GCAAATTTTTTCTTCTCACA+GGG - chr3_1:64551724-64551743 Msa0368210:intron 30.0%
!! CTTTGGGACATTATAAGAAA+TGG - chr3_1:64551821-64551840 Msa0368210:intron 30.0%
TTCAAAAAGGTTAGTGAATC+AGG + chr3_1:64551853-64551872 None:intergenic 30.0%
CTTCAAGTAAGACTTCAAAA+AGG + chr3_1:64551866-64551885 None:intergenic 30.0%
!!! CTTTTTGAAGTCTTACTTGA+AGG - chr3_1:64551864-64551883 Msa0368210:intron 30.0%
AATATGATAGATGTTGAGTG+AGG + chr3_1:64551908-64551927 None:intergenic 30.0%
TGAAACTGCATCATAAATAC+GGG + chr3_1:64551987-64552006 None:intergenic 30.0%
TAGTCTATGATCTTTAAGCA+TGG + chr3_1:64552059-64552078 None:intergenic 30.0%
!!! AAGTTTTTGGTAATGTGCTT+TGG - chr3_1:64552146-64552165 Msa0368210:intron 30.0%
AATACTCAAATGTTTCCGTA+AGG - chr3_1:64552251-64552270 Msa0368210:intron 30.0%
ATACTCAAATGTTTCCGTAA+GGG - chr3_1:64552252-64552271 Msa0368210:intron 30.0%
! ATTTGTAAGGAAAAAGTGTG+AGG + chr3_1:64552282-64552301 None:intergenic 30.0%
CTTGTGTCATACTATTTGTA+AGG + chr3_1:64552295-64552314 None:intergenic 30.0%
CACAAAAGTTAGTACTTTAC+CGG + chr3_1:64552369-64552388 None:intergenic 30.0%
AGACATGGGAAATTTCATAA+AGG + chr3_1:64552547-64552566 None:intergenic 30.0%
GCAAACTGTAAAATAGACAT+GGG + chr3_1:64552561-64552580 None:intergenic 30.0%
AGCAAACTGTAAAATAGACA+TGG + chr3_1:64552562-64552581 None:intergenic 30.0%
CTAATAATGTTGGAACTTAC+AGG - chr3_1:64552586-64552605 Msa0368210:intron 30.0%
AAAGAAAAGAGTAGAATGAC+TGG + chr3_1:64552704-64552723 None:intergenic 30.0%
TAGTTCATGGTGAATAATCA+AGG + chr3_1:64552828-64552847 None:intergenic 30.0%
CCACATAATGTAACATGTTA+GGG - chr3_1:64552874-64552893 Msa0368210:intron 30.0%
AAATAATTGTGTGACGCTAT+GGG - chr3_1:64552990-64553009 Msa0368210:CDS 30.0%
TACATTTGAACCGATATTGA+GGG + chr3_1:64553062-64553081 None:intergenic 30.0%
TGAAACTTGAATTCTAACGG+TGG + chr3_1:64548320-64548339 None:intergenic 35.0%
GAAGACATTGATACTCTAAG+GGG + chr3_1:64548436-64548455 None:intergenic 35.0%
CTGAAGACATTGATACTCTA+AGG + chr3_1:64548438-64548457 None:intergenic 35.0%
TTACAGTCTCCAATCTTGTT+AGG + chr3_1:64548511-64548530 None:intergenic 35.0%
AGACACCTTGACATAATTCA+AGG + chr3_1:64548755-64548774 None:intergenic 35.0%
AAAATCAAATCCTACCCTTG+GGG + chr3_1:64548993-64549012 None:intergenic 35.0%
GATCGTTTGTTTACGCAATT+CGG - chr3_1:64549073-64549092 Msa0368210:intron 35.0%
AGAATTAAGGTTTACAGCGT+TGG - chr3_1:64549156-64549175 Msa0368210:intron 35.0%
TGCTTATAAATGTGACCGAA+GGG + chr3_1:64549190-64549209 None:intergenic 35.0%
TTGCTTATAAATGTGACCGA+AGG + chr3_1:64549191-64549210 None:intergenic 35.0%
ATGTATTGAGTACGGTTCAT+AGG + chr3_1:64549524-64549543 None:intergenic 35.0%
! TTACTAGGACTCCTTTTTCT+TGG - chr3_1:64549654-64549673 Msa0368210:CDS 35.0%
ACTGGTCGTGTATGATTTAT+TGG + chr3_1:64549693-64549712 None:intergenic 35.0%
GGGTTGTTAGGAATTATTAG+AGG - chr3_1:64549836-64549855 Msa0368210:intron 35.0%
AGAACTAACTAGAGAAAGCT+TGG + chr3_1:64549868-64549887 None:intergenic 35.0%
GAGAGGAAAGGAGAAAAAAT+TGG - chr3_1:64549913-64549932 Msa0368210:intron 35.0%
GAGGAAAGGAGAAAAAATTG+GGG - chr3_1:64549915-64549934 Msa0368210:intron 35.0%
!! TGTGGATTTGCTATACATCT+AGG - chr3_1:64550046-64550065 Msa0368210:intron 35.0%
!! TACTTTTGGTTGATTGCTGT+TGG - chr3_1:64550079-64550098 Msa0368210:intron 35.0%
!!! TCAACCAATTTTGGCTCATA+AGG + chr3_1:64550250-64550269 None:intergenic 35.0%
! CAAAGTATCTCCAAATGATG+AGG + chr3_1:64550563-64550582 None:intergenic 35.0%
ACGATATCTGACAGATTCAA+GGG + chr3_1:64550755-64550774 None:intergenic 35.0%
TCTTTGTATATGTCTTCCCT+TGG - chr3_1:64550844-64550863 Msa0368210:intron 35.0%
CTTTCGTTAGTCAGTAAGTA+TGG - chr3_1:64550889-64550908 Msa0368210:intron 35.0%
GTCTCTCGTTTGTAATTTCA+TGG + chr3_1:64550916-64550935 None:intergenic 35.0%
TAACACCATCTCACTCATTT+AGG - chr3_1:64550980-64550999 Msa0368210:CDS 35.0%
AACACCATCTCACTCATTTA+GGG - chr3_1:64550981-64551000 Msa0368210:CDS 35.0%
! AGAGTCATACATTTTCCTTG+AGG + chr3_1:64551211-64551230 None:intergenic 35.0%
TAGCCGAGACAAAAATAGAA+GGG + chr3_1:64551237-64551256 None:intergenic 35.0%
ATAGCCGAGACAAAAATAGA+AGG + chr3_1:64551238-64551257 None:intergenic 35.0%
ACACTACAAGAGAAGTGATA+GGG + chr3_1:64551351-64551370 None:intergenic 35.0%
!! TTTTCTTGTTTCGATCCTTC+TGG - chr3_1:64551649-64551668 Msa0368210:intron 35.0%
ATGTCTTTCCCATTGACAAA+AGG + chr3_1:64551751-64551770 None:intergenic 35.0%
ATCTCCAAATGGTATAGCTT+TGG + chr3_1:64551799-64551818 None:intergenic 35.0%
ATACCATTTGGAGATTGCTT+TGG - chr3_1:64551804-64551823 Msa0368210:intron 35.0%
TACCATTTGGAGATTGCTTT+GGG - chr3_1:64551805-64551824 Msa0368210:intron 35.0%
TCAATAGGGAGACTTGAATT+TGG - chr3_1:64552097-64552116 Msa0368210:intron 35.0%
!! AATTGCAAAAACGGGCTATA+GGG + chr3_1:64552217-64552236 None:intergenic 35.0%
!! AAATTGCAAAAACGGGCTAT+AGG + chr3_1:64552218-64552237 None:intergenic 35.0%
TACTCAAATGTTTCCGTAAG+GGG - chr3_1:64552253-64552272 Msa0368210:intron 35.0%
CATAGACAATGGATCATCTA+GGG + chr3_1:64552501-64552520 None:intergenic 35.0%
ACATAGACAATGGATCATCT+AGG + chr3_1:64552502-64552521 None:intergenic 35.0%
! ACTTACAGGAAATTTTCTCG+AGG - chr3_1:64552600-64552619 Msa0368210:intron 35.0%
! CTTACAGGAAATTTTCTCGA+GGG - chr3_1:64552601-64552620 Msa0368210:intron 35.0%
TATCATCAACCCTCTACTTT+AGG + chr3_1:64552680-64552699 None:intergenic 35.0%
ATTGGTATTCAACTCTACAG+TGG + chr3_1:64552788-64552807 None:intergenic 35.0%
GCCACATAATGTAACATGTT+AGG - chr3_1:64552873-64552892 Msa0368210:intron 35.0%
CCCTAACATGTTACATTATG+TGG + chr3_1:64552877-64552896 None:intergenic 35.0%
TAATGTAACATGTTAGGGAG+AGG - chr3_1:64552879-64552898 Msa0368210:intron 35.0%
GAAATAATTGTGTGACGCTA+TGG - chr3_1:64552989-64553008 Msa0368210:CDS 35.0%
AATAATTGTGTGACGCTATG+GGG - chr3_1:64552991-64553010 Msa0368210:CDS 35.0%
! CTGCCTTTTATTAAGACCAA+GGG + chr3_1:64553030-64553049 None:intergenic 35.0%
GCTTTCTTTACCCTCAATAT+CGG - chr3_1:64553049-64553068 Msa0368210:CDS 35.0%
GTACATTTGAACCGATATTG+AGG + chr3_1:64553063-64553082 None:intergenic 35.0%
GTTGAAGGAGCTAGTTGAAA+CGG + chr3_1:64548395-64548414 None:intergenic 40.0%
GCTTTAACAGCAACTTCCAA+TGG + chr3_1:64548475-64548494 None:intergenic 40.0%
CTTACCACTCCTAACAAGAT+TGG - chr3_1:64548499-64548518 Msa0368210:three_prime_UTR 40.0%
GTAGAAAGAATAGGGTAGTG+TGG - chr3_1:64548642-64548661 Msa0368210:intron 40.0%
AGAGAGGTAAACAACACACT+TGG + chr3_1:64549099-64549118 None:intergenic 40.0%
AATATCCCTGAAACGTACTG+CGG - chr3_1:64549361-64549380 Msa0368210:intron 40.0%
ACAGGAGCTCATTAACCATT+TGG + chr3_1:64549556-64549575 None:intergenic 40.0%
TTGAATCCGAGTATCCAAAC+CGG - chr3_1:64549585-64549604 Msa0368210:CDS 40.0%
!! AATGTTCCGGTTTGGATACT+CGG + chr3_1:64549594-64549613 None:intergenic 40.0%
AGTCTGGTCAAGAAATGTTC+CGG + chr3_1:64549607-64549626 None:intergenic 40.0%
! GACTCCTTTTTCTTGGAAGA+GGG - chr3_1:64549661-64549680 Msa0368210:CDS 40.0%
CTAACCCTCTTCCAAGAAAA+AGG + chr3_1:64549668-64549687 None:intergenic 40.0%
! CTTTTTCTTGGAAGAGGGTT+AGG - chr3_1:64549666-64549685 Msa0368210:CDS 40.0%
!! TGCAAAGTGTTGAGAGCTAT+TGG - chr3_1:64549795-64549814 Msa0368210:intron 40.0%
CCAAATTGACCTATGTCTAG+GGG + chr3_1:64549958-64549977 None:intergenic 40.0%
CCCAAATTGACCTATGTCTA+GGG + chr3_1:64549959-64549978 None:intergenic 40.0%
CCCTAGACATAGGTCAATTT+GGG - chr3_1:64549956-64549975 Msa0368210:intron 40.0%
AAGACTCCGTTTAACCAGTT+CGG + chr3_1:64549982-64550001 None:intergenic 40.0%
! TTTGGTTGATTGCTGTTGGT+TGG - chr3_1:64550083-64550102 Msa0368210:intron 40.0%
! ATTCAGGCCCTTTTAGTCAA+AGG - chr3_1:64550194-64550213 Msa0368210:intron 40.0%
! TTCAGGCCCTTTTAGTCAAA+GGG - chr3_1:64550195-64550214 Msa0368210:intron 40.0%
GCAACACCCTTTGACTAAAA+GGG + chr3_1:64550204-64550223 None:intergenic 40.0%
AGCAACACCCTTTGACTAAA+AGG + chr3_1:64550205-64550224 None:intergenic 40.0%
TGTGGTCTGTAAGTGAAACA+TGG + chr3_1:64550307-64550326 None:intergenic 40.0%
TTCCTTGAAATCAGTCCTGA+AGG - chr3_1:64550394-64550413 Msa0368210:intron 40.0%
! TACCTTCAGGACTGATTTCA+AGG + chr3_1:64550399-64550418 None:intergenic 40.0%
ATTACGGGAACTTTACCTTC+AGG + chr3_1:64550412-64550431 None:intergenic 40.0%
GAGTAGCACGGTAACATAAA+GGG + chr3_1:64550698-64550717 None:intergenic 40.0%
TGAGTAGCACGGTAACATAA+AGG + chr3_1:64550699-64550718 None:intergenic 40.0%
AAAGTTGACACTGAGTAGCA+CGG + chr3_1:64550710-64550729 None:intergenic 40.0%
GACGATATCTGACAGATTCA+AGG + chr3_1:64550756-64550775 None:intergenic 40.0%
ATGTCTTCCCTTGGTCAATT+TGG - chr3_1:64550853-64550872 Msa0368210:intron 40.0%
ACTAACGAAAGACATATCCG+AGG + chr3_1:64550880-64550899 None:intergenic 40.0%
TAGTCCCTAAATGAGTGAGA+TGG + chr3_1:64550988-64551007 None:intergenic 40.0%
AAGAGCAAAGATCCCAATGA+CGG - chr3_1:64551140-64551159 Msa0368210:intron 40.0%
TTCCTTGAGGTAATCGTTGA+AGG + chr3_1:64551198-64551217 None:intergenic 40.0%
! CTTTTCCTGCATTATGGTCA+TGG - chr3_1:64551324-64551343 Msa0368210:intron 40.0%
CACACTACAAGAGAAGTGAT+AGG + chr3_1:64551352-64551371 None:intergenic 40.0%
TTTGCAACATCACACGTAGA+TGG + chr3_1:64551402-64551421 None:intergenic 40.0%
GCAAAACATTAAACGGGGAT+TGG - chr3_1:64551417-64551436 Msa0368210:intron 40.0%
CAATGGGAAAGACATATCTG+CGG - chr3_1:64551756-64551775 Msa0368210:intron 40.0%
!! ATAGCTTTGGTCCTAGTGAT+AGG + chr3_1:64551786-64551805 None:intergenic 40.0%
AGGACCAAAGCTATACCATT+TGG - chr3_1:64551792-64551811 Msa0368210:intron 40.0%
ATGATAGATGTTGAGTGAGG+AGG + chr3_1:64551905-64551924 None:intergenic 40.0%
CAATCGGTATTTGCACAGAA+GGG + chr3_1:64552318-64552337 None:intergenic 40.0%
! GTGCAAATACCGATTGCTAA+AGG - chr3_1:64552322-64552341 Msa0368210:intron 40.0%
! TGAAGCACTCCTTTAGCAAT+CGG + chr3_1:64552334-64552353 None:intergenic 40.0%
CAAGCTGACAACTAGTGAAA+AGG + chr3_1:64552466-64552485 None:intergenic 40.0%
AATGGATCATCTAGGGATCA+GGG + chr3_1:64552494-64552513 None:intergenic 40.0%
TCATTTGCTTGAGTCTCTGA+AGG - chr3_1:64552723-64552742 Msa0368210:intron 40.0%
ATATACTCAACTAGAGTCGG+AGG + chr3_1:64552752-64552771 None:intergenic 40.0%
TTTATTAAGACCAAGGGCAG+TGG + chr3_1:64553024-64553043 None:intergenic 40.0%
!! CTGCCCTTGGTCTTAATAAA+AGG - chr3_1:64553024-64553043 Msa0368210:CDS 40.0%
! GCTGCCTTTTATTAAGACCA+AGG + chr3_1:64553031-64553050 None:intergenic 40.0%
ACGGTAACGAAGGTGGTTAA+CGG + chr3_1:64548362-64548381 None:intergenic 45.0%
TTGAAACGGCGTAGTTTGGA+CGG + chr3_1:64548381-64548400 None:intergenic 45.0%
CTAGTTGAAACGGCGTAGTT+TGG + chr3_1:64548385-64548404 None:intergenic 45.0%
GTCTCCAATCTTGTTAGGAG+TGG + chr3_1:64548506-64548525 None:intergenic 45.0%
TATGAAGCACAACACCGACA+CGG + chr3_1:64548793-64548812 None:intergenic 45.0%
ATACTGATATCCTCTCCCCA+AGG - chr3_1:64548975-64548994 Msa0368210:intron 45.0%
TACTGATATCCTCTCCCCAA+GGG - chr3_1:64548976-64548995 Msa0368210:intron 45.0%
CAACTTCTCTGTAGTCAGAG+AGG + chr3_1:64549115-64549134 None:intergenic 45.0%
ATATCCCTGAAACGTACTGC+GGG - chr3_1:64549362-64549381 Msa0368210:intron 45.0%
TTTGGGCCAAATGCAAGGAA+GGG - chr3_1:64549443-64549462 Msa0368210:intron 45.0%
CTTTCACCCTTCCTTGCATT+TGG + chr3_1:64549452-64549471 None:intergenic 45.0%
CAAATGCAAGGAAGGGTGAA+AGG - chr3_1:64549450-64549469 Msa0368210:intron 45.0%
GGTTCATAGGCACAATAGAG+GGG + chr3_1:64549511-64549530 None:intergenic 45.0%
CGGTTCATAGGCACAATAGA+GGG + chr3_1:64549512-64549531 None:intergenic 45.0%
ACGGTTCATAGGCACAATAG+AGG + chr3_1:64549513-64549532 None:intergenic 45.0%
TGGTTAATGAGCTCCTGTCA+AGG - chr3_1:64549558-64549577 Msa0368210:intron 45.0%
CGGATTCAATTGACCTTGAC+AGG + chr3_1:64549574-64549593 None:intergenic 45.0%
GGTCAAGAAATGTTCCGGTT+TGG + chr3_1:64549602-64549621 None:intergenic 45.0%
! GGACTCCTTTTTCTTGGAAG+AGG - chr3_1:64549660-64549679 Msa0368210:CDS 45.0%
! GTGTTGAGAGCTATTGGTTG+AGG - chr3_1:64549801-64549820 Msa0368210:intron 45.0%
! AGAGCTATTGGTTGAGGTTC+TGG - chr3_1:64549807-64549826 Msa0368210:intron 45.0%
! GAGCTATTGGTTGAGGTTCT+GGG - chr3_1:64549808-64549827 Msa0368210:intron 45.0%
! AGCTATTGGTTGAGGTTCTG+GGG - chr3_1:64549809-64549828 Msa0368210:intron 45.0%
TCTTGAGTGACTCATCTGAG+TGG - chr3_1:64549885-64549904 Msa0368210:intron 45.0%
CTTGAGTGACTCATCTGAGT+GGG - chr3_1:64549886-64549905 Msa0368210:intron 45.0%
CCCCTAGACATAGGTCAATT+TGG - chr3_1:64549955-64549974 Msa0368210:intron 45.0%
GCCCAAATTGACCTATGTCT+AGG + chr3_1:64549960-64549979 None:intergenic 45.0%
TTTGGGCCGAACTGGTTAAA+CGG - chr3_1:64549973-64549992 Msa0368210:intron 45.0%
!! TGCTGTTGGTTGGACTGTTT+TGG - chr3_1:64550093-64550112 Msa0368210:intron 45.0%
!! GCTGTTGGTTGGACTGTTTT+GGG - chr3_1:64550094-64550113 Msa0368210:intron 45.0%
TGCTCCACACATCATTGTCT+TGG - chr3_1:64550137-64550156 Msa0368210:intron 45.0%
CTCACCAAGACAATGATGTG+TGG + chr3_1:64550144-64550163 None:intergenic 45.0%
GGACAAGAAGATCACCATTC+TGG + chr3_1:64550286-64550305 None:intergenic 45.0%
!!! TTTTCAGGTGGTGTCACCAA+TGG + chr3_1:64550508-64550527 None:intergenic 45.0%
! ATTGGTGACACCACCTGAAA+AGG - chr3_1:64550507-64550526 Msa0368210:intron 45.0%
! ACATACGCTGTAGCCTTTTC+AGG + chr3_1:64550523-64550542 None:intergenic 45.0%
CTCCTTCAACGATTACCTCA+AGG - chr3_1:64551193-64551212 Msa0368210:CDS 45.0%
GCAGGAAAAGATGTAATGCC+AGG + chr3_1:64551314-64551333 None:intergenic 45.0%
ACACGTAGATGGAGTACAAG+AGG + chr3_1:64551391-64551410 None:intergenic 45.0%
! TCACAGGGTCCTTTTGTCAA+TGG - chr3_1:64551739-64551758 Msa0368210:intron 45.0%
! CACAGGGTCCTTTTGTCAAT+GGG - chr3_1:64551740-64551759 Msa0368210:intron 45.0%
GTCCCAAAGCAATCTCCAAA+TGG + chr3_1:64551810-64551829 None:intergenic 45.0%
GCAATCGGTATTTGCACAGA+AGG + chr3_1:64552319-64552338 None:intergenic 45.0%
! AGTTAGTACTTTACCGGCTG+CGG + chr3_1:64552363-64552382 None:intergenic 45.0%
GCTGACAACTAGTGAAAAGG+AGG + chr3_1:64552463-64552482 None:intergenic 45.0%
CAATGGATCATCTAGGGATC+AGG + chr3_1:64552495-64552514 None:intergenic 45.0%
CAACCTTCAATGACATCCTC+CGG + chr3_1:64552653-64552672 None:intergenic 45.0%
TGCTTTACATGCAGCCTTCA+TGG + chr3_1:64552905-64552924 None:intergenic 45.0%
GTAACGAAGGTGGTTAACGG+TGG + chr3_1:64548359-64548378 None:intergenic 50.0%
AGTTTGGACGGTAACGAAGG+TGG + chr3_1:64548369-64548388 None:intergenic 50.0%
CGTAGTTTGGACGGTAACGA+AGG + chr3_1:64548372-64548391 None:intergenic 50.0%
AGTTCCTCCTTCTGAGCCAT+TGG - chr3_1:64548456-64548475 Msa0368210:three_prime_UTR 50.0%
ACTTCCAATGGCTCAGAAGG+AGG + chr3_1:64548463-64548482 None:intergenic 50.0%
GCAACTTCCAATGGCTCAGA+AGG + chr3_1:64548466-64548485 None:intergenic 50.0%
AGCACGACACATGTCGGATA+CGG + chr3_1:64548713-64548732 None:intergenic 50.0%
TTTCAGTGTCGTGTCCGTGT+CGG - chr3_1:64548776-64548795 Msa0368210:CDS 50.0%
! GCGTTGGCATATAGTCCCTT+CGG - chr3_1:64549172-64549191 Msa0368210:intron 50.0%
TATCCCTGAAACGTACTGCG+GGG - chr3_1:64549363-64549382 Msa0368210:intron 50.0%
TTTGTTGCAGGAAGCGGCTA+GGG + chr3_1:64549404-64549423 None:intergenic 50.0%
! CGACTGTTTGTTGCAGGAAG+CGG + chr3_1:64549410-64549429 None:intergenic 50.0%
CGCTTCCTGCAACAAACAGT+CGG - chr3_1:64549408-64549427 Msa0368210:intron 50.0%
! TAAGGCCGACTGTTTGTTGC+AGG + chr3_1:64549416-64549435 None:intergenic 50.0%
TTTGGCCCAAACGTGCGTTA+AGG + chr3_1:64549434-64549453 None:intergenic 50.0%
GTTTGGGCCAAATGCAAGGA+AGG - chr3_1:64549442-64549461 Msa0368210:intron 50.0%
AGGCACAATAGAGGGGCAAA+GGG + chr3_1:64549504-64549523 None:intergenic 50.0%
TAGGCACAATAGAGGGGCAA+AGG + chr3_1:64549505-64549524 None:intergenic 50.0%
!! TCATCTGAGTGGGTTGAGAG+AGG - chr3_1:64549896-64549915 Msa0368210:intron 50.0%
!! TGAGTGGGTTGAGAGAGGAA+AGG - chr3_1:64549901-64549920 Msa0368210:intron 50.0%
TTGGTCACTCCCCTAGACAT+AGG - chr3_1:64549946-64549965 Msa0368210:intron 50.0%
TAGGTCAATTTGGGCCGAAC+TGG - chr3_1:64549965-64549984 Msa0368210:intron 50.0%
!! TCAAAGGGTGTTGCTGACAC+TGG - chr3_1:64550210-64550229 Msa0368210:intron 50.0%
! GAAGTATCCTAGCCCACCAT+TGG - chr3_1:64550489-64550508 Msa0368210:intron 50.0%
!! TACGCTGTAGCCTTTTCAGG+TGG + chr3_1:64550520-64550539 None:intergenic 50.0%
CCGAGGACCAAATTGACCAA+GGG + chr3_1:64550863-64550882 None:intergenic 50.0%
CCCTTGGTCAATTTGGTCCT+CGG - chr3_1:64550860-64550879 Msa0368210:intron 50.0%
TCCGAGGACCAAATTGACCA+AGG + chr3_1:64550864-64550883 None:intergenic 50.0%
GCTTGTTCGGTTCCGTCATT+GGG + chr3_1:64551155-64551174 None:intergenic 50.0%
TGCTTGTTCGGTTCCGTCAT+TGG + chr3_1:64551156-64551175 None:intergenic 50.0%
AGGTCTCTCAATCTCTGACC+TGG - chr3_1:64551293-64551312 Msa0368210:intron 50.0%
AGGGTCCATGACCATAATGC+AGG + chr3_1:64551332-64551351 None:intergenic 50.0%
CTCTTGTAGTGTGCATCGCT+TGG - chr3_1:64551359-64551378 Msa0368210:intron 50.0%
AAGTGTGAGGAAGCCCCTTA+CGG + chr3_1:64552269-64552288 None:intergenic 50.0%
TGCTTCATAACAACCGCAGC+CGG - chr3_1:64552347-64552366 Msa0368210:intron 50.0%
CATTAACACACGTGCACAGC+CGG - chr3_1:64552631-64552650 Msa0368210:intron 50.0%
CGGAGGATGTCATTGAAGGT+TGG - chr3_1:64552651-64552670 Msa0368210:intron 50.0%
AGGTTGGCGTCCTAAAGTAG+AGG - chr3_1:64552667-64552686 Msa0368210:intron 50.0%
GGTTGGCGTCCTAAAGTAGA+GGG - chr3_1:64552668-64552687 Msa0368210:intron 50.0%
ATGTTAGGGAGAGGCCATGA+AGG - chr3_1:64552888-64552907 Msa0368210:intron 50.0%
ACGAAGGTGGTTAACGGTGG+CGG + chr3_1:64548356-64548375 None:intergenic 55.0%
GCACGACACATGTCGGATAC+GGG + chr3_1:64548712-64548731 None:intergenic 55.0%
CTGTCGAGCACGACACATGT+CGG + chr3_1:64548719-64548738 None:intergenic 55.0%
GATATCCTCTCCCCAAGGGT+AGG - chr3_1:64548980-64548999 Msa0368210:intron 55.0%
CAAATCCTACCCTTGGGGAG+AGG + chr3_1:64548988-64549007 None:intergenic 55.0%
ATCCCTGAAACGTACTGCGG+GGG - chr3_1:64549364-64549383 Msa0368210:intron 55.0%
! GTTTGTTGCAGGAAGCGGCT+AGG + chr3_1:64549405-64549424 None:intergenic 55.0%
AGTCGGCCTTAACGCACGTT+TGG - chr3_1:64549425-64549444 Msa0368210:intron 55.0%
GTCGGCCTTAACGCACGTTT+GGG - chr3_1:64549426-64549445 Msa0368210:intron 55.0%
GCACGTTTGGGCCAAATGCA+AGG - chr3_1:64549438-64549457 Msa0368210:intron 55.0%
!! TTCTGGGGCCTTGGGTTGTT+AGG - chr3_1:64549824-64549843 Msa0368210:intron 55.0%
!! AAGGGTGTTGCTGACACTGG+AGG - chr3_1:64550213-64550232 Msa0368210:intron 55.0%
!! CAGGTGGTGTCACCAATGGT+GGG + chr3_1:64550504-64550523 None:intergenic 55.0%
!! TCAGGTGGTGTCACCAATGG+TGG + chr3_1:64550505-64550524 None:intergenic 55.0%
TCTGCGGCTGACCTATCACT+AGG - chr3_1:64551772-64551791 Msa0368210:intron 55.0%
CAGCCGGAGGATGTCATTGA+AGG - chr3_1:64552647-64552666 Msa0368210:intron 55.0%
AGCCCCCGCAGTACGTTTCA+GGG + chr3_1:64549369-64549388 None:intergenic 60.0%
TAGCCCCCGCAGTACGTTTC+AGG + chr3_1:64549370-64549389 None:intergenic 60.0%
!! TGGTTGAGGTTCTGGGGCCT+TGG - chr3_1:64549815-64549834 Msa0368210:intron 60.0%
!! GGTTGAGGTTCTGGGGCCTT+GGG - chr3_1:64549816-64549835 Msa0368210:intron 60.0%
!! GGTGTCACCAATGGTGGGCT+AGG + chr3_1:64550499-64550518 None:intergenic 60.0%
TAACACACGTGCACAGCCGG+AGG - chr3_1:64552634-64552653 Msa0368210:intron 60.0%
AGGAAGCGGCTAGGGTGCAG+GGG + chr3_1:64549396-64549415 None:intergenic 65.0%
CAGGAAGCGGCTAGGGTGCA+GGG + chr3_1:64549397-64549416 None:intergenic 65.0%
! GGGTGATGTGCCACTGCCCT+TGG - chr3_1:64553011-64553030 Msa0368210:CDS 65.0%
GAAGCGGCTAGGGTGCAGGG+GGG + chr3_1:64549394-64549413 None:intergenic 70.0%
GGAAGCGGCTAGGGTGCAGG+GGG + chr3_1:64549395-64549414 None:intergenic 70.0%
GCAGGAAGCGGCTAGGGTGC+AGG + chr3_1:64549398-64549417 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 64548313 64553140 64548313 ID=Msa0368210;Name=Msa0368210
chr3_1 mRNA 64548313 64553140 64548313 ID=Msa0368210-mRNA-1;Parent=Msa0368210;Name=Msa0368210-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.83|0.85|1|0.83|0.71|7|322|272
chr3_1 exon 64548313 64548583 64548313 ID=Msa0368210-mRNA-1:exon:12880;Parent=Msa0368210-mRNA-1
chr3_1 exon 64548708 64548845 64548708 ID=Msa0368210-mRNA-1:exon:12879;Parent=Msa0368210-mRNA-1
chr3_1 exon 64549568 64549708 64549568 ID=Msa0368210-mRNA-1:exon:12878;Parent=Msa0368210-mRNA-1
chr3_1 exon 64550233 64550350 64550233 ID=Msa0368210-mRNA-1:exon:12877;Parent=Msa0368210-mRNA-1
chr3_1 exon 64550917 64551060 64550917 ID=Msa0368210-mRNA-1:exon:12876;Parent=Msa0368210-mRNA-1
chr3_1 exon 64551163 64551253 64551163 ID=Msa0368210-mRNA-1:exon:12875;Parent=Msa0368210-mRNA-1
chr3_1 exon 64552903 64553140 64552903 ID=Msa0368210-mRNA-1:exon:12874;Parent=Msa0368210-mRNA-1
chr3_1 CDS 64552903 64553140 64552903 ID=Msa0368210-mRNA-1:cds;Parent=Msa0368210-mRNA-1
chr3_1 CDS 64551163 64551253 64551163 ID=Msa0368210-mRNA-1:cds;Parent=Msa0368210-mRNA-1
chr3_1 CDS 64550917 64551060 64550917 ID=Msa0368210-mRNA-1:cds;Parent=Msa0368210-mRNA-1
chr3_1 CDS 64550233 64550350 64550233 ID=Msa0368210-mRNA-1:cds;Parent=Msa0368210-mRNA-1
chr3_1 CDS 64549568 64549708 64549568 ID=Msa0368210-mRNA-1:cds;Parent=Msa0368210-mRNA-1
chr3_1 CDS 64548759 64548845 64548759 ID=Msa0368210-mRNA-1:cds;Parent=Msa0368210-mRNA-1
chr3_1 three_prime_UTR 64548708 64548758 64548708 ID=Msa0368210-mRNA-1:three_prime_utr;Parent=Msa0368210-mRNA-1
chr3_1 three_prime_UTR 64548313 64548583 64548313 ID=Msa0368210-mRNA-1:three_prime_utr;Parent=Msa0368210-mRNA-1
Gene Sequence

>Msa0368210

ATGTCCACCGTTAGAATTCAAGTTTCAGCATGCGCTCTTTCCGCCACCGTTAACCACCTTCGTTACCGTCCAAACTACGCCGTTTCAACTAGCTCCTTCAACAACAGTTTCAGTATTAAACCCCTTAGAGTATCAATGTCTTCAGTTCCTCCTTCTGAGCCATTGGAAGTTGCTGTTAAAGCTTCTCTTACCACTCCTAACAAGATTGGAGACTGTAAAAATTCTTACCCTTTTCATGGCCCTTTTAGTCAAAGGGTGTTGCTGACACTGGAGGAAAAACATTTACCTTATGAGCCAAAATTGGTTGATTTAAGAAACAAACCAGAATGGTTCCTTGAAATCAGTCCTGAAGGTAAAGTTCCCGTAATAAATTTTGATGGAAAGTGGGTTGCTGATTCAGATTTAATCACACAAACATTGGAGGAGAAGTATCCTAGCCCACCATTGGTGACACCACCTGAAAAGGCTACAGCTGGGTCAAAGATCTTTTCTACATTTATTGGATTTCTCAAGAGCAAAGATCCCAATGACGGAACCGAACAAGCATTACTAAATGAACTGAGCTCCTTCAACGATTACCTCAAGGAAAATGGTCCTTTTGTCAATGGGAAAGACATATCTGCGGCTGACCTATCACTAGGACCAAAGCTATACCATTTGGAGATTGCTTTGGGACATTATAAGAAATGGACAGTACCTGATTCACTAACCTTTTTGAAGTCTTACTTGAAGGAAATTTTCTCGAGGGAGTCATTCATTAACACACGTGCACAGCCGGAGGATGTCATTGAAGGTTGGCGTCCTAAAGTAGAGGGTTGA

Protein sequence

>Msa0368210

MSTVRIQVSACALSATVNHLRYRPNYAVSTSSFNNSFSIKPLRVSMSSVPPSEPLEVAVKASLTTPNKIGDCKNSYPFHGPFSQRVLLTLEEKHLPYEPKLVDLRNKPEWFLEISPEGKVPVINFDGKWVADSDLITQTLEEKYPSPPLVTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLNELSSFNDYLKENGPFVNGKDISAADLSLGPKLYHLEIALGHYKKWTVPDSLTFLKSYLKEIFSRESFINTRAQPEDVIEGWRPKVEG*