Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046830 | sp|Q9C5Z1|EIF3B_ARATH | 76.197 | 710 | 168 | 1 | 5 | 713 | 1 | 710 | 0.0 | 1157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003720 | Msa0046830 | 0.807280 | 5.459797e-50 | -8.615850e-47 |
| Msa0012940 | Msa0046830 | 0.860846 | 1.553113e-63 | -8.615850e-47 |
| Msa0022970 | Msa0046830 | 0.825968 | 3.508997e-54 | -8.615850e-47 |
| Msa0024710 | Msa0046830 | 0.801337 | 9.443033e-49 | -8.615850e-47 |
| Msa0032020 | Msa0046830 | 0.808207 | 3.469385e-50 | -8.615850e-47 |
| Msa0045730 | Msa0046830 | 0.800062 | 1.718481e-48 | -8.615850e-47 |
| Msa0046830 | Msa0093850 | 0.842648 | 2.273753e-58 | -8.615850e-47 |
| Msa0046830 | Msa0098470 | 0.825544 | 4.424473e-54 | -8.615850e-47 |
| Msa0046830 | Msa0106320 | 0.847078 | 1.451726e-59 | -8.615850e-47 |
| Msa0046830 | Msa0118710 | 0.843204 | 1.617920e-58 | -8.615850e-47 |
| Msa0046830 | Msa0127850 | 0.800434 | 1.443907e-48 | -8.615850e-47 |
| Msa0046830 | Msa0130110 | 0.805395 | 1.362868e-49 | -8.615850e-47 |
| Msa0046830 | Msa0146280 | 0.821842 | 3.257183e-53 | -8.615850e-47 |
| Msa0046830 | Msa0152870 | 0.839075 | 1.967708e-57 | -8.615850e-47 |
| Msa0046830 | Msa0188690 | 0.852140 | 5.612766e-61 | -8.615850e-47 |
| Msa0046830 | Msa0192230 | 0.834413 | 3.041034e-56 | -8.615850e-47 |
| Msa0046830 | Msa0202020 | 0.811367 | 7.252623e-51 | -8.615850e-47 |
| Msa0046830 | Msa0218830 | 0.818277 | 2.132121e-52 | -8.615850e-47 |
| Msa0046830 | Msa0219120 | 0.820731 | 5.873308e-53 | -8.615850e-47 |
| Msa0046830 | Msa0221030 | 0.814382 | 1.584775e-51 | -8.615850e-47 |
| Msa0046830 | Msa0230490 | 0.808143 | 3.579376e-50 | -8.615850e-47 |
| Msa0046830 | Msa0231100 | 0.800249 | 1.574831e-48 | -8.615850e-47 |
| Msa0046830 | Msa0241830 | 0.803575 | 3.265144e-49 | -8.615850e-47 |
| Msa0046830 | Msa0258850 | 0.814327 | 1.630107e-51 | -8.615850e-47 |
| Msa0046830 | Msa0261170 | 0.808678 | 2.751817e-50 | -8.615850e-47 |
| Msa0046830 | Msa0262480 | 0.829025 | 6.483649e-55 | -8.615850e-47 |
| Msa0046830 | Msa0270210 | 0.850933 | 1.232163e-60 | -8.615850e-47 |
| Msa0046830 | Msa0289580 | 0.809958 | 1.462776e-50 | -8.615850e-47 |
| Msa0046830 | Msa0289610 | 0.811137 | 8.137622e-51 | -8.615850e-47 |
| Msa0046830 | Msa0296250 | 0.831641 | 1.487863e-55 | -8.615850e-47 |
| Msa0046830 | Msa0298200 | 0.822772 | 1.981138e-53 | -8.615850e-47 |
| Msa0046830 | Msa0300350 | 0.824449 | 8.022130e-54 | -8.615850e-47 |
| Msa0046830 | Msa0307850 | 0.847788 | 9.262873e-60 | -8.615850e-47 |
| Msa0046830 | Msa0313100 | 0.808170 | 3.533243e-50 | -8.615850e-47 |
| Msa0046830 | Msa0327300 | 0.834830 | 2.389021e-56 | -8.615850e-47 |
| Msa0046830 | Msa0332640 | 0.812370 | 4.387286e-51 | -8.615850e-47 |
| Msa0046830 | Msa0336010 | 0.801926 | 7.148556e-49 | -8.615850e-47 |
| Msa0046830 | Msa0341690 | 0.840002 | 1.129889e-57 | -8.615850e-47 |
| Msa0046830 | Msa0348830 | 0.804477 | 2.120237e-49 | -8.615850e-47 |
| Msa0046830 | Msa0382210 | 0.952864 | 9.640125e-111 | -8.615850e-47 |
| Msa0046830 | Msa0423750 | 0.805369 | 1.380375e-49 | -8.615850e-47 |
| Msa0046830 | Msa0435370 | 0.862123 | 6.330168e-64 | -8.615850e-47 |
| Msa0046830 | Msa0435420 | 0.847261 | 1.293632e-59 | -8.615850e-47 |
| Msa0046830 | Msa0435570 | 0.834165 | 3.509596e-56 | -8.615850e-47 |
| Msa0046830 | Msa0443390 | 0.808724 | 2.691105e-50 | -8.615850e-47 |
| Msa0046830 | Msa0518030 | 0.814956 | 1.183222e-51 | -8.615850e-47 |
| Msa0046830 | Msa0520660 | 0.812452 | 4.210291e-51 | -8.615850e-47 |
| Msa0046830 | Msa0526540 | 0.824624 | 7.295866e-54 | -8.615850e-47 |
| Msa0046830 | Msa0527150 | 0.834186 | 3.466449e-56 | -8.615850e-47 |
| Msa0046830 | Msa0531250 | 0.806966 | 6.364442e-50 | -8.615850e-47 |
| Msa0046830 | Msa0534750 | 0.807170 | 5.762042e-50 | -8.615850e-47 |
| Msa0046830 | Msa0571920 | 0.819631 | 1.049610e-52 | -8.615850e-47 |
| Msa0046830 | Msa0576940 | 0.822748 | 2.006713e-53 | -8.615850e-47 |
| Msa0046830 | Msa0593700 | 0.823526 | 1.320889e-53 | -8.615850e-47 |
| Msa0046830 | Msa0619860 | 0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0046830 | Msa0620990 | 0.821851 | 3.240395e-53 | -8.615850e-47 |
| Msa0046830 | Msa0623200 | 0.812211 | 4.751581e-51 | -8.615850e-47 |
| Msa0046830 | Msa0633570 | 0.817724 | 2.842923e-52 | -8.615850e-47 |
| Msa0046830 | Msa0658590 | 0.825542 | 4.430123e-54 | -8.615850e-47 |
| Msa0046830 | Msa0666230 | 0.810328 | 1.217234e-50 | -8.615850e-47 |
| Msa0046830 | Msa0693330 | 0.800343 | 1.506579e-48 | -8.615850e-47 |
| Msa0046830 | Msa0703550 | 0.837858 | 4.056209e-57 | -8.615850e-47 |
| Msa0046830 | Msa0705000 | 0.801614 | 8.285755e-49 | -8.615850e-47 |
| Msa0046830 | Msa0706500 | 0.834243 | 3.354913e-56 | -8.615850e-47 |
| Msa0046830 | Msa0721020 | 0.800693 | 1.278347e-48 | -8.615850e-47 |
| Msa0046830 | Msa0739080 | 0.801801 | 7.587250e-49 | -8.615850e-47 |
| Msa0046830 | Msa0785130 | 0.843660 | 1.222403e-58 | -8.615850e-47 |
| Msa0046830 | Msa0790400 | 0.856456 | 3.178423e-62 | -8.615850e-47 |
| Msa0046830 | Msa0804250 | 0.821696 | 3.519403e-53 | -8.615850e-47 |
| Msa0046830 | Msa0817540 | 0.819107 | 1.381779e-52 | -8.615850e-47 |
| Msa0046830 | Msa0819540 | 0.819773 | 9.739235e-53 | -8.615850e-47 |
| Msa0046830 | Msa0826510 | 0.800214 | 1.601066e-48 | -8.615850e-47 |
| Msa0046830 | Msa0867060 | 0.817476 | 3.233700e-52 | -8.615850e-47 |
| Msa0046830 | Msa0963020 | 0.844457 | 7.472931e-59 | -8.615850e-47 |
| Msa0046830 | Msa0997430 | 0.812419 | 4.280226e-51 | -8.615850e-47 |
| Msa0046830 | Msa1012740 | 0.862262 | 5.739782e-64 | -8.615850e-47 |
| Msa0046830 | Msa1012770 | 0.810469 | 1.134819e-50 | -8.615850e-47 |
| Msa0046830 | Msa1017510 | 0.801492 | 8.779202e-49 | -8.615850e-47 |
| Msa0046830 | Msa1019240 | 0.816665 | 4.919937e-52 | -8.615850e-47 |
| Msa0046830 | Msa1029070 | 0.803079 | 4.136894e-49 | -8.615850e-47 |
| Msa0046830 | Msa1039520 | 0.826165 | 3.151206e-54 | -8.615850e-47 |
| Msa0046830 | Msa1070390 | 0.801124 | 1.043921e-48 | -8.615850e-47 |
| Msa0046830 | Msa1072710 | 0.827880 | 1.225137e-54 | -8.615850e-47 |
| Msa0046830 | Msa1076560 | 0.807001 | 6.256049e-50 | -8.615850e-47 |
| Msa0046830 | Msa1123350 | 0.806981 | 6.317763e-50 | -8.615850e-47 |
| Msa0046830 | Msa1123830 | 0.837339 | 5.511607e-57 | -8.615850e-47 |
| Msa0046830 | Msa1127590 | 0.830766 | 2.441675e-55 | -8.615850e-47 |
| Msa0046830 | Msa1132480 | 0.839253 | 1.769799e-57 | -8.615850e-47 |
| Msa0046830 | Msa1135890 | 0.816020 | 6.858328e-52 | -8.615850e-47 |
| Msa0046830 | Msa1166870 | 0.804669 | 1.933030e-49 | -8.615850e-47 |
| Msa0046830 | Msa1218450 | 0.812326 | 4.485882e-51 | -8.615850e-47 |
| Msa0046830 | Msa1226470 | 0.817579 | 3.064571e-52 | -8.615850e-47 |
| Msa0046830 | Msa1230580 | 0.830817 | 2.371671e-55 | -8.615850e-47 |
| Msa0046830 | Msa1235250 | 0.800285 | 1.548106e-48 | -8.615850e-47 |
| Msa0046830 | Msa1258710 | 0.814910 | 1.211085e-51 | -8.615850e-47 |
| Msa0046830 | Msa1262890 | 0.833126 | 6.379333e-56 | -8.615850e-47 |
| Msa0046830 | Msa1265630 | 0.800823 | 1.202877e-48 | -8.615850e-47 |
| Msa0046830 | Msa1266060 | 0.812890 | 3.376101e-51 | -8.615850e-47 |
| Msa0046830 | Msa1298620 | 0.803087 | 4.121537e-49 | -8.615850e-47 |
| Msa0046830 | Msa1331710 | 0.800195 | 1.614939e-48 | -8.615850e-47 |
| Msa0046830 | Msa1349570 | 0.819828 | 9.459345e-53 | -8.615850e-47 |
| Msa0046830 | Msa1363330 | 0.822060 | 2.898721e-53 | -8.615850e-47 |
| Msa0046830 | Msa1369190 | 0.801370 | 9.298350e-49 | -8.615850e-47 |
| Msa0046830 | Msa1373820 | 0.818791 | 1.630422e-52 | -8.615850e-47 |
| Msa0046830 | Msa1374060 | 0.820730 | 5.878379e-53 | -8.615850e-47 |
| Msa0046830 | Msa1385810 | 0.839680 | 1.370912e-57 | -8.615850e-47 |
| Msa0046830 | Msa1386600 | 0.821604 | 3.695923e-53 | -8.615850e-47 |
| Msa0046830 | Msa1403570 | 0.833691 | 4.610594e-56 | -8.615850e-47 |
| Msa0046830 | Msa1409260 | 0.841968 | 3.442925e-58 | -8.615850e-47 |
| Msa0046830 | Msa1410440 | 0.810560 | 1.084775e-50 | -8.615850e-47 |
| Msa0046830 | Msa1411500 | 0.817565 | 3.087098e-52 | -8.615850e-47 |
| Msa0046830 | Msa1411950 | 0.809963 | 1.459128e-50 | -8.615850e-47 |
| Msa0046830 | Msa1426490 | 0.810097 | 1.365651e-50 | -8.615850e-47 |
| Msa0046830 | Msa1427560 | 0.825976 | 3.494521e-54 | -8.615850e-47 |
| Msa0046830 | Msa1440310 | 0.800978 | 1.118235e-48 | -8.615850e-47 |
| Msa0046830 | Msa1443300 | 0.853394 | 2.459803e-61 | -8.615850e-47 |
| Msa0046830 | Msa1443930 | 0.805414 | 1.350498e-49 | -8.615850e-47 |
| Msa0046830 | Msa1465260 | 0.806536 | 7.843170e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046830 | MtrunA17_Chr3g0136501 | 99.163 | 717 | 5 | 1 | 1 | 717 | 1 | 716 | 0.0 | 1461 |
| Msa0046830 | MtrunA17_Chr7g0235801 | 83.505 | 97 | 16 | 0 | 603 | 699 | 10 | 106 | 6.62e-46 | 160 |
| Msa0046830 | MtrunA17_Chr4g0045551 | 24.000 | 400 | 265 | 14 | 225 | 615 | 51 | 420 | 2.97e-22 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0046830 | AT5G27640.3 | 76.197 | 710 | 168 | 1 | 5 | 713 | 1 | 710 | 0.0 | 1157 |
| Msa0046830 | AT5G27640.1 | 76.197 | 710 | 168 | 1 | 5 | 713 | 1 | 710 | 0.0 | 1157 |
| Msa0046830 | AT5G25780.1 | 76.504 | 698 | 163 | 1 | 17 | 713 | 14 | 711 | 0.0 | 1149 |
| Msa0046830 | AT5G27640.2 | 73.505 | 736 | 168 | 2 | 5 | 713 | 1 | 736 | 0.0 | 1144 |
| Msa0046830 | AT1G49015.1 | 50.885 | 226 | 91 | 5 | 311 | 535 | 3 | 209 | 7.59e-66 | 217 |
| Msa0046830 | AT1G73180.2 | 22.931 | 423 | 290 | 11 | 195 | 610 | 18 | 411 | 2.42e-24 | 107 |
| Msa0046830 | AT1G73180.1 | 22.931 | 423 | 290 | 11 | 195 | 610 | 18 | 411 | 2.60e-24 | 107 |
Find 201 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAAGGATCACTTCTTTC+AGG | 0.197022 | 1_1:-79253788 | Msa0046830:intron |
| TCAGTTCATGAAATGGAAAA+TGG | 0.213561 | 1_1:-79253853 | Msa0046830:CDS |
| TTGCCTGAGTTCTTCTTTGC+TGG | 0.214747 | 1_1:+79254556 | None:intergenic |
| TTCAATATATATAGTTCTTA+TGG | 0.217744 | 1_1:-79253479 | Msa0046830:intron |
| CTGGAGTTTGATTCTGGATT+TGG | 0.226852 | 1_1:-79256546 | Msa0046830:CDS |
| ACATACTCACAGAAAATATA+TGG | 0.231895 | 1_1:+79256205 | None:intergenic |
| GAGAATCTGGAGTTTGATTC+TGG | 0.241775 | 1_1:-79256552 | Msa0046830:CDS |
| TTCACCTGGTGAGAAGTATT+TGG | 0.260721 | 1_1:-79255261 | Msa0046830:CDS |
| TTTGAAGGTTGAAAATATAA+TGG | 0.262529 | 1_1:-79254806 | Msa0046830:CDS |
| GAAGACAAAGCTTTGCTTCT+CGG | 0.279856 | 1_1:-79256755 | Msa0046830:CDS |
| CTCGAGGATTGCTTGGTTCA+TGG | 0.280093 | 1_1:+79255225 | None:intergenic |
| CCTGGAGCATATTCCTTGTT+TGG | 0.282373 | 1_1:+79256132 | None:intergenic |
| TGGAAAATGGATTCAATATA+TGG | 0.298256 | 1_1:-79253840 | Msa0046830:CDS |
| CTTACAGCACGTTTATAAAC+AGG | 0.307612 | 1_1:+79255650 | None:intergenic |
| GTATGTCACGTTCCTTTATA+CGG | 0.318455 | 1_1:+79254411 | None:intergenic |
| GCCTATGTTATCATGGACTA+TGG | 0.330399 | 1_1:-79252825 | Msa0046830:three_prime_UTR |
| TGCCTGAGTTCTTCTTTGCT+GGG | 0.335374 | 1_1:+79254557 | None:intergenic |
| CATAGATTTGCTGTTATTCA+TGG | 0.340404 | 1_1:-79254320 | Msa0046830:CDS |
| GTCACCTTTGGGTACTTACT+TGG | 0.345166 | 1_1:-79255498 | Msa0046830:CDS |
| TCAATGGCAAACATCTTTAT+CGG | 0.350253 | 1_1:-79253813 | Msa0046830:CDS |
| GCGACAACGCTAAAGCTTTA+CGG | 0.354532 | 1_1:-79256834 | Msa0046830:five_prime_UTR |
| ATTGCGGTCGTGAGTGATTA+TGG | 0.356628 | 1_1:+79256809 | None:intergenic |
| ATGCAACAGCTTCCATTCAT+TGG | 0.362435 | 1_1:+79253287 | None:intergenic |
| TTCCTCAACTTCAATGTCCT+TGG | 0.368351 | 1_1:+79253194 | None:intergenic |
| TGACATACCTATTGAAGTTC+TGG | 0.372905 | 1_1:-79254396 | Msa0046830:CDS |
| AGTCAAGAAAGAGGCTGGTC+TGG | 0.374540 | 1_1:+79253452 | None:intergenic |
| AGCAGGCAAATGCTTTGTTT+TGG | 0.385029 | 1_1:-79254208 | Msa0046830:CDS |
| TAGATACTAATATCAGGCTT+AGG | 0.385115 | 1_1:+79254290 | None:intergenic |
| CTCAACTTGAAGGATCTCTT+TGG | 0.396493 | 1_1:+79253158 | None:intergenic |
| TCCTTCTACTGAAAAGTCCT+TGG | 0.402875 | 1_1:-79256394 | Msa0046830:CDS |
| TAGGCCTGTAAAACAATAAT+CGG | 0.409843 | 1_1:+79252843 | None:intergenic |
| TAGTTATCCTAGTAGCTAGT+TGG | 0.411219 | 1_1:-79253059 | Msa0046830:three_prime_UTR |
| AATGGATATGTCTGTGGATT+GGG | 0.412928 | 1_1:+79257080 | None:intergenic |
| AGGAACAAACAATGAAATGA+TGG | 0.426468 | 1_1:+79254759 | None:intergenic |
| TAACAGACTTGTGTCTGAAA+AGG | 0.427088 | 1_1:+79252920 | None:intergenic |
| TTAGCGTTGTCGCAGTGAAA+TGG | 0.428140 | 1_1:+79256844 | None:intergenic |
| ATAGAGTAGATACTAATATC+AGG | 0.429014 | 1_1:+79254284 | None:intergenic |
| TGTTATTCAAGAGGAGAATC+TGG | 0.430382 | 1_1:-79256565 | Msa0046830:CDS |
| TCGAGCTCCAGAACTTCAAT+AGG | 0.431350 | 1_1:+79254389 | None:intergenic |
| TCATTGTTTGTTCCTGAGAC+AGG | 0.434027 | 1_1:-79254751 | Msa0046830:CDS |
| ATAAGATCATTGCATTTGCT+TGG | 0.434886 | 1_1:-79254355 | Msa0046830:CDS |
| CTCTTTCTTGACTGCTGAGA+AGG | 0.436026 | 1_1:-79253442 | Msa0046830:CDS |
| GAAAGGTTTCAATGGACTGT+TGG | 0.438764 | 1_1:-79254150 | Msa0046830:CDS |
| GGAGGAGGAGCCCACTCGTC+TGG | 0.438943 | 1_1:+79256153 | None:intergenic |
| CTAGCATTTAAGTGCTAAGA+TGG | 0.439060 | 1_1:+79252882 | None:intergenic |
| AATTTCTCCTTGGGAACAAC+AGG | 0.441899 | 1_1:+79256498 | None:intergenic |
| CTGGCTGTGCCGTCGGTAAA+CGG | 0.442377 | 1_1:-79256972 | Msa0046830:intron |
| TTTACAGGCCTATGTTATCA+TGG | 0.444567 | 1_1:-79252832 | Msa0046830:three_prime_UTR |
| ATATGTCTGTGGATTGGGCT+CGG | 0.444679 | 1_1:+79257085 | None:intergenic |
| AGTTATCCTAGTAGCTAGTT+GGG | 0.445581 | 1_1:-79253058 | Msa0046830:three_prime_UTR |
| AAGCTTCTCGAATTTCTCCT+TGG | 0.445814 | 1_1:+79256488 | None:intergenic |
| TAAGATCATTGCATTTGCTT+GGG | 0.448404 | 1_1:-79254354 | Msa0046830:CDS |
| TAGTTGTTGACGGCGGCAAT+CGG | 0.449280 | 1_1:+79256998 | None:intergenic |
| CTTGGCAACAGTTCACCGTC+AGG | 0.449567 | 1_1:-79255480 | Msa0046830:CDS |
| CTATTAAAGAGGATGGTCTC+TGG | 0.450216 | 1_1:-79256428 | Msa0046830:CDS |
| AGAGAGATGTACTTGAAAAC+AGG | 0.450761 | 1_1:+79255004 | None:intergenic |
| GGAGCATATTCCTTGTTTGG+AGG | 0.451980 | 1_1:+79256135 | None:intergenic |
| ACAGCAAATCTATGTCCCTT+TGG | 0.453395 | 1_1:+79254329 | None:intergenic |
| AGCTTCTCGAATTTCTCCTT+GGG | 0.454211 | 1_1:+79256489 | None:intergenic |
| TTCAATATATGGTCTTTCAA+TGG | 0.455846 | 1_1:-79253829 | Msa0046830:CDS |
| AACCAGCACGAATCACAAAC+TGG | 0.455853 | 1_1:+79255720 | None:intergenic |
| GAAGACTCAAGGATACAAAC+TGG | 0.456776 | 1_1:-79256235 | Msa0046830:CDS |
| TTTATGCAACTGATGTTGAA+TGG | 0.458529 | 1_1:-79254079 | Msa0046830:CDS |
| TGTAACTTCAGTTCATGAAA+TGG | 0.459413 | 1_1:-79253860 | Msa0046830:CDS |
| TGATAAGTACTTTGCAAGGA+TGG | 0.459925 | 1_1:-79254887 | Msa0046830:CDS |
| CCTTCTACTGAAAAGTCCTT+GGG | 0.460856 | 1_1:-79256393 | Msa0046830:CDS |
| TTTGTTGATTTAGGGTTTGG+AGG | 0.461123 | 1_1:+79257049 | None:intergenic |
| CCAAACAAGGAATATGCTCC+AGG | 0.464666 | 1_1:-79256132 | Msa0046830:CDS |
| GAGGCGAAGAAGTATGTAAC+TGG | 0.467713 | 1_1:-79253110 | Msa0046830:three_prime_UTR |
| GTATGTAACTGGCTAGTAGA+TGG | 0.467949 | 1_1:-79253099 | Msa0046830:three_prime_UTR |
| ATCACTCACGACCGCAATCA+TGG | 0.470458 | 1_1:-79256804 | Msa0046830:exon |
| GTCAAGAAAGAGGCTGGTCT+GGG | 0.472650 | 1_1:+79253453 | None:intergenic |
| TTTGTACAATGGTCACCTTT+GGG | 0.473131 | 1_1:-79255509 | Msa0046830:CDS |
| AACAGACTTGTGTCTGAAAA+GGG | 0.474344 | 1_1:+79252921 | None:intergenic |
| CATGCGTTACGCACATCCTC+AGG | 0.475971 | 1_1:-79255417 | Msa0046830:intron |
| GGAGGTACTGGAGGTGTCAC+TGG | 0.476252 | 1_1:-79255037 | Msa0046830:CDS |
| TGAAAGAAGATTGGGACAAG+TGG | 0.476327 | 1_1:-79253311 | Msa0046830:CDS |
| CATTGAAGTTGAGGAAATAG+TGG | 0.477980 | 1_1:-79253187 | Msa0046830:CDS |
| CAGCCAGGTTTAGTTGTTGA+CGG | 0.479174 | 1_1:+79256988 | None:intergenic |
| TGCATTTGCTTGGGAGCCAA+AGG | 0.480773 | 1_1:-79254345 | Msa0046830:CDS |
| GGTTTGGAGGCTCTTCCAAA+TGG | 0.481121 | 1_1:+79257062 | None:intergenic |
| AAAATATAATGGATTTCAGC+TGG | 0.484915 | 1_1:-79254795 | Msa0046830:CDS |
| GAGTAGTGAGCTTTGAAACT+CGG | 0.485051 | 1_1:+79254240 | None:intergenic |
| GCTAATACTCCTCAACTTGA+AGG | 0.487202 | 1_1:+79253148 | None:intergenic |
| CAAAGGAAAATCTGCAACAA+TGG | 0.488176 | 1_1:-79255766 | Msa0046830:intron |
| AAACAGAAATTTACCCTAGC+AGG | 0.488817 | 1_1:+79254715 | None:intergenic |
| GGGACAAGTGGGCCAATGAA+TGG | 0.489541 | 1_1:-79253299 | Msa0046830:CDS |
| AGAAGCTAGTGATGAGGAAG+AGG | 0.489836 | 1_1:-79253226 | Msa0046830:CDS |
| TTATGCAACTGATGTTGAAT+GGG | 0.491113 | 1_1:-79254078 | Msa0046830:CDS |
| TGGTTACCACCTCCTGTCTC+AGG | 0.491207 | 1_1:+79254739 | None:intergenic |
| GTAGGGTCTTGAAAGAAGAT+TGG | 0.493073 | 1_1:-79253320 | Msa0046830:CDS |
| GCATATTCCTTGTTTGGAGG+AGG | 0.495988 | 1_1:+79256138 | None:intergenic |
| ATGAAGAAGAGAAGCTAGAG+AGG | 0.497330 | 1_1:-79253266 | Msa0046830:CDS |
| AGATACTAATATCAGGCTTA+GGG | 0.497798 | 1_1:+79254291 | None:intergenic |
| GACCAGTTTGTGATTCGTGC+TGG | 0.499072 | 1_1:-79255722 | Msa0046830:CDS |
| GCAGGATTGAAAGGTTTCAA+TGG | 0.500217 | 1_1:-79254158 | Msa0046830:CDS |
| AGGATTCCGCAGTTGTCACC+TGG | 0.502357 | 1_1:+79256689 | None:intergenic |
| AAATGGATATGTCTGTGGAT+TGG | 0.503467 | 1_1:+79257079 | None:intergenic |
| GCACGTTTATAAACAGGGTC+GGG | 0.503903 | 1_1:+79255656 | None:intergenic |
| AATCCACAGACATATCCATT+TGG | 0.506225 | 1_1:-79257077 | Msa0046830:five_prime_UTR |
| GAGGTGGTAACCAGCCTGCT+AGG | 0.506612 | 1_1:-79254729 | Msa0046830:CDS |
| TTAGCATCTCGAGGATTGCT+TGG | 0.508363 | 1_1:+79255218 | None:intergenic |
| TAGGGTCTTGAAAGAAGATT+GGG | 0.508845 | 1_1:-79253319 | Msa0046830:CDS |
| AACAAGAGCGTGAGAAGCGT+AGG | 0.510887 | 1_1:-79253338 | Msa0046830:CDS |
| TATGTCTGTGGATTGGGCTC+GGG | 0.511737 | 1_1:+79257086 | None:intergenic |
| GGAACAAACAATGAAATGAT+GGG | 0.513266 | 1_1:+79254760 | None:intergenic |
| GATTCCATTCACCTTCCTCC+AGG | 0.514429 | 1_1:-79256707 | Msa0046830:CDS |
| ACACTGCCCAACTAGCTACT+AGG | 0.516582 | 1_1:+79253052 | None:intergenic |
| GGTCGCTTCATTGTACTAGC+AGG | 0.518685 | 1_1:-79254176 | Msa0046830:CDS |
| GATGTTGAATGGGATCCAAC+TGG | 0.519724 | 1_1:-79254068 | Msa0046830:CDS |
| CACTACTCTGAAAGGCAAGC+AGG | 0.520325 | 1_1:-79254225 | Msa0046830:CDS |
| GCCTGAGTTCTTCTTTGCTG+GGG | 0.521347 | 1_1:+79254558 | None:intergenic |
| CCGCCGTCAACAACTAAACC+TGG | 0.522577 | 1_1:-79256991 | Msa0046830:five_prime_UTR |
| CATACTCACAGAAAATATAT+GGG | 0.522843 | 1_1:+79256206 | None:intergenic |
| TCAGCAGCAATGAAACATCT+TGG | 0.522882 | 1_1:+79253364 | None:intergenic |
| GTCACCTGGAGGAAGGTGAA+TGG | 0.523301 | 1_1:+79256703 | None:intergenic |
| TTTGTTCCTGAGACAGGAGG+TGG | 0.523334 | 1_1:-79254745 | Msa0046830:CDS |
| GTGACAACTGCGGAATCCTC+AGG | 0.526265 | 1_1:-79256685 | Msa0046830:intron |
| ATTTGGCAATATTATTGTAG+TGG | 0.528989 | 1_1:-79256529 | Msa0046830:CDS |
| ATGCGGACGGCTCAGAACAC+TGG | 0.531191 | 1_1:-79254263 | Msa0046830:CDS |
| CTTCTCAGCAGTCAAGAAAG+AGG | 0.535616 | 1_1:+79253443 | None:intergenic |
| CAAAGAGATCCTTCAAGTTG+AGG | 0.540194 | 1_1:-79253157 | Msa0046830:CDS |
| CGCAGTTGTCACCTGGAGGA+AGG | 0.540787 | 1_1:+79256696 | None:intergenic |
| AATGGAATCGAGATCGATAG+AGG | 0.542175 | 1_1:+79256721 | None:intergenic |
| ATTGTACTAGCAGGATTGAA+AGG | 0.547734 | 1_1:-79254167 | Msa0046830:CDS |
| TAGATAATATACCTTCCAGT+TGG | 0.547750 | 1_1:+79254053 | None:intergenic |
| TCAGCAGTCAAGAAAGAGGC+TGG | 0.549593 | 1_1:+79253447 | None:intergenic |
| AGCACGTTTATAAACAGGGT+CGG | 0.550976 | 1_1:+79255655 | None:intergenic |
| ACAAAGAAAAGCACATTCAC+AGG | 0.551860 | 1_1:-79254446 | Msa0046830:CDS |
| CATTGAGTACAATACTCCTC+AGG | 0.551994 | 1_1:-79256361 | Msa0046830:intron |
| GCATTTGCTTGGGAGCCAAA+GGG | 0.553319 | 1_1:-79254344 | Msa0046830:CDS |
| AGCCAAGGACATTGAAGTTG+AGG | 0.555326 | 1_1:-79253196 | Msa0046830:CDS |
| TAATCTACCTGTTGTTCCCA+AGG | 0.563226 | 1_1:-79256505 | Msa0046830:CDS |
| AACATATTTGATGTGAGGAC+TGG | 0.564013 | 1_1:-79255106 | Msa0046830:CDS |
| ACATCTTTATCGGATATTGA+AGG | 0.564648 | 1_1:-79253803 | Msa0046830:CDS |
| TTTCTTGACTGCTGAGAAGG+AGG | 0.564955 | 1_1:-79253439 | Msa0046830:CDS |
| TCAGTGACTGCAAGATGTAC+TGG | 0.566940 | 1_1:-79254517 | Msa0046830:CDS |
| AGCTAGAGAGGGAAAATCTG+AGG | 0.568066 | 1_1:-79253254 | Msa0046830:CDS |
| AGTACAATGAAGCGACCTGC+TGG | 0.569021 | 1_1:+79254182 | None:intergenic |
| CATTACATCCGCCATGATTG+CGG | 0.569291 | 1_1:+79256793 | None:intergenic |
| AAAATGTTCAGTATTAGCCA+TGG | 0.570734 | 1_1:+79254100 | None:intergenic |
| TCAGATTGGTGCTATTAAAG+AGG | 0.572204 | 1_1:-79256439 | Msa0046830:CDS |
| ACAATGGCTTACTGATGCTA+AGG | 0.574787 | 1_1:-79255750 | Msa0046830:CDS |
| CGTTTACCGACGGCACAGCC+AGG | 0.574861 | 1_1:+79256973 | None:intergenic |
| TTGTTTGTTCCTGAGACAGG+AGG | 0.576213 | 1_1:-79254748 | Msa0046830:CDS |
| ATCGGTAGAGTTAGCGCAAG+GGG | 0.576549 | 1_1:+79257016 | None:intergenic |
| ACTAAACCTGGCTGTGCCGT+CGG | 0.578062 | 1_1:-79256979 | Msa0046830:five_prime_UTR |
| GATAAGTACTTTGCAAGGAT+GGG | 0.579491 | 1_1:-79254886 | Msa0046830:CDS |
| TCAAAGCTCACTACTCTGAA+AGG | 0.580014 | 1_1:-79254233 | Msa0046830:CDS |
| ATTGGTGCTATTAAAGAGGA+TGG | 0.581702 | 1_1:-79256435 | Msa0046830:CDS |
| TTGGCAACAGTTCACCGTCA+GGG | 0.582074 | 1_1:-79255479 | Msa0046830:CDS |
| GTAACGCATGAGACGATTGA+AGG | 0.583285 | 1_1:+79255430 | None:intergenic |
| AGAAATTTACCCTAGCAGGC+TGG | 0.583948 | 1_1:+79254719 | None:intergenic |
| CATGAAAGTGCCAGACGAGT+GGG | 0.584342 | 1_1:-79256163 | Msa0046830:CDS |
| GTGGGCTCCTCCTCCAAACA+AGG | 0.584356 | 1_1:-79256145 | Msa0046830:CDS |
| TCGCCTCACTCTTGAAAACA+TGG | 0.584580 | 1_1:+79253126 | None:intergenic |
| AATGAAATGATGGGATCAGT+TGG | 0.584945 | 1_1:+79254769 | None:intergenic |
| CAATCGGTAGAGTTAGCGCA+AGG | 0.585884 | 1_1:+79257014 | None:intergenic |
| TCCCCAGCAAAGAAGAACTC+AGG | 0.587881 | 1_1:-79254559 | Msa0046830:CDS |
| TGACGATGATGTTATTCAAG+AGG | 0.592706 | 1_1:-79256574 | Msa0046830:CDS |
| GAGGTGTCACTGGAGTGTCA+TGG | 0.597067 | 1_1:-79255027 | Msa0046830:CDS |
| CTTCCAAATGGATATGTCTG+TGG | 0.597999 | 1_1:+79257074 | None:intergenic |
| TCATGAAAGTGCCAGACGAG+TGG | 0.602382 | 1_1:-79256164 | Msa0046830:CDS |
| AGGTGGTAACCAGCCTGCTA+GGG | 0.602403 | 1_1:-79254728 | Msa0046830:intron |
| AAGATGATAAGTACTTTGCA+AGG | 0.602451 | 1_1:-79254891 | Msa0046830:CDS |
| TTTGCTATCGGAGGTACTGG+AGG | 0.604919 | 1_1:-79255046 | Msa0046830:CDS |
| GAAAGAAGATTGGGACAAGT+GGG | 0.605311 | 1_1:-79253310 | Msa0046830:CDS |
| TTTCTTTGCAGATGGAGTGG+TGG | 0.605394 | 1_1:-79254916 | Msa0046830:intron |
| GGAAGAGGAATATGAAGCCA+AGG | 0.609071 | 1_1:-79253211 | Msa0046830:CDS |
| CTTGCTAAAGAGAAGACTCA+AGG | 0.612535 | 1_1:-79256246 | Msa0046830:CDS |
| CAAACAAGGAATATGCTCCA+GGG | 0.614249 | 1_1:-79256131 | Msa0046830:CDS |
| GAGAGGGAAAATCTGAGGGA+CGG | 0.615059 | 1_1:-79253249 | Msa0046830:CDS |
| TCGTGCTGGTTCAGATACTG+AGG | 0.620611 | 1_1:-79255708 | Msa0046830:CDS |
| ACCATAGTCCATGATAACAT+AGG | 0.624794 | 1_1:+79252824 | None:intergenic |
| AACGATCAACATTAACAGCA+AGG | 0.625990 | 1_1:+79254477 | None:intergenic |
| GGACGGAGAAGCTAGTGATG+AGG | 0.627430 | 1_1:-79253232 | Msa0046830:CDS |
| GTTACCAAATACTTCTCACC+AGG | 0.628866 | 1_1:+79255257 | None:intergenic |
| TGGCAACAGTTCACCGTCAG+GGG | 0.629158 | 1_1:-79255478 | Msa0046830:CDS |
| GCTAGAGAGGGAAAATCTGA+GGG | 0.630478 | 1_1:-79253253 | Msa0046830:CDS |
| AAGATGTACTGGCAGAGCAA+TGG | 0.630702 | 1_1:-79254506 | Msa0046830:CDS |
| TAGTATCTACTCTATGCGGA+CGG | 0.640265 | 1_1:-79254276 | Msa0046830:CDS |
| CTCAATGAAGCAGTAACCCA+AGG | 0.644342 | 1_1:+79256377 | None:intergenic |
| GGCAACAGTTCACCGTCAGG+GGG | 0.645973 | 1_1:-79255477 | Msa0046830:CDS |
| TTGAATGGGATCCAACTGGA+AGG | 0.646444 | 1_1:-79254064 | Msa0046830:intron |
| AATCGGTAGAGTTAGCGCAA+GGG | 0.651886 | 1_1:+79257015 | None:intergenic |
| ACAAGAGCGTGAGAAGCGTA+GGG | 0.657658 | 1_1:-79253337 | Msa0046830:CDS |
| AAACAAGGAATATGCTCCAG+GGG | 0.658157 | 1_1:-79256130 | Msa0046830:intron |
| TGATAAACATATTTGATGTG+AGG | 0.659557 | 1_1:-79255111 | Msa0046830:CDS |
| TGTTGATGAGCTTGAAACCA+TGG | 0.663924 | 1_1:-79254117 | Msa0046830:CDS |
| TGAAGAAGAGAAGCTAGAGA+GGG | 0.666164 | 1_1:-79253265 | Msa0046830:CDS |
| ACACTCACATTAGCATCTCG+AGG | 0.667806 | 1_1:+79255209 | None:intergenic |
| TTACAGCACGTTTATAAACA+GGG | 0.671673 | 1_1:+79255651 | None:intergenic |
| ACGCATGAGACGATTGAAGG+TGG | 0.677518 | 1_1:+79255433 | None:intergenic |
| CTTCCTCCAGGTGACAACTG+CGG | 0.689197 | 1_1:-79256695 | Msa0046830:CDS |
| ATTCCGCAGTTGTCACCTGG+AGG | 0.690949 | 1_1:+79256692 | None:intergenic |
| GTTGCCAAGTAAGTACCCAA+AGG | 0.691070 | 1_1:+79255494 | None:intergenic |
| GGATTCTTACCGTTTACCGA+CGG | 0.695877 | 1_1:+79256963 | None:intergenic |
| ATATTAGTATCTACTCTATG+CGG | 0.708759 | 1_1:-79254280 | Msa0046830:CDS |
| CCAGGTTTAGTTGTTGACGG+CGG | 0.714336 | 1_1:+79256991 | None:intergenic |
| GTCTACAAAGATGAACACAA+AGG | 0.743492 | 1_1:+79253029 | None:intergenic |
| ACTCACGACCGCAATCATGG+CGG | 0.758784 | 1_1:-79256801 | Msa0046830:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTTAATATCTTTTACT+TGG | - | chr1_1:79254072-79254091 | Msa0046830:CDS | 10.0% |
| !! | TTTGGTATAAAATTAACAAA+AGG | + | chr1_1:79253870-79253889 | None:intergenic | 15.0% |
| !!! | ATTTTATACCAAAAACAAAT+AGG | - | chr1_1:79253877-79253896 | Msa0046830:CDS | 15.0% |
| !!! | TATTTTTTGAATTACAGTTT+TGG | - | chr1_1:79254363-79254382 | Msa0046830:CDS | 15.0% |
| !! | TTCAATATATATAGTTCTTA+TGG | - | chr1_1:79256425-79256444 | Msa0046830:CDS | 15.0% |
| !! | AACAAAAAAACTACAAAATT+GGG | + | chr1_1:79256900-79256919 | None:intergenic | 15.0% |
| !! | AAACAAAAAAACTACAAAAT+TGG | + | chr1_1:79256901-79256920 | None:intergenic | 15.0% |
| !! | TTCAAATTTATGAGAAAAAA+GGG | + | chr1_1:79256943-79256962 | None:intergenic | 15.0% |
| !! | AATCATAAAATCTGAAAGTA+TGG | + | chr1_1:79253279-79253298 | None:intergenic | 20.0% |
| !! | AGAAAAATTTATAGTCAGAT+TGG | - | chr1_1:79253451-79253470 | Msa0046830:CDS | 20.0% |
| !!! | GTAAATAGATACTCTTTTTT+AGG | - | chr1_1:79253565-79253584 | Msa0046830:intron | 20.0% |
| !! | ATCATATTTGTAATTCTACA+AGG | + | chr1_1:79253986-79254005 | None:intergenic | 20.0% |
| !! | TGTAGAATTACAAATATGAT+TGG | - | chr1_1:79253986-79254005 | Msa0046830:intron | 20.0% |
| !!! | TGTATTATTTGATGTTTTCT+AGG | - | chr1_1:79254299-79254318 | Msa0046830:CDS | 20.0% |
| !! | TTAAGAGATTAATGATCAAA+GGG | + | chr1_1:79254326-79254345 | None:intergenic | 20.0% |
| !! | ATTAAGAGATTAATGATCAA+AGG | + | chr1_1:79254327-79254346 | None:intergenic | 20.0% |
| !! | AAAAATATGACAACCATAAA+GGG | + | chr1_1:79254350-79254369 | None:intergenic | 20.0% |
| !! | AAAAAATATGACAACCATAA+AGG | + | chr1_1:79254351-79254370 | None:intergenic | 20.0% |
| !! | AAAGAAAAAAAAAAAACCTG+AGG | + | chr1_1:79254506-79254525 | None:intergenic | 20.0% |
| !! | AGTATATGAATATAAATCTC+AGG | - | chr1_1:79254604-79254623 | Msa0046830:intron | 20.0% |
| !! | TTTGAAGGTTGAAAATATAA+TGG | - | chr1_1:79255098-79255117 | Msa0046830:CDS | 20.0% |
| !!! | TTTTTAATTTCTGTTCTTGA+TGG | - | chr1_1:79255298-79255317 | Msa0046830:intron | 20.0% |
| !!! | ATGGTTATAGTTTTTTTACA+TGG | - | chr1_1:79256223-79256242 | Msa0046830:CDS | 20.0% |
| !!! | TGGTTATAGTTTTTTTACAT+GGG | - | chr1_1:79256224-79256243 | Msa0046830:CDS | 20.0% |
| !!! | AAATATTGTACAGCAATTTT+TGG | + | chr1_1:79256380-79256399 | None:intergenic | 20.0% |
| !! | GTTCAAATTTATGAGAAAAA+AGG | + | chr1_1:79256944-79256963 | None:intergenic | 20.0% |
| !!! | AACGATGTTTTGTTGATTTA+GGG | + | chr1_1:79252866-79252885 | None:intergenic | 25.0% |
| ! | AAGAGTAAATTAATGTGGAA+AGG | + | chr1_1:79253015-79253034 | None:intergenic | 25.0% |
| ! | GATAGAAGAGTAAATTAATG+TGG | + | chr1_1:79253020-79253039 | None:intergenic | 25.0% |
| ! | ATTTGGCAATATTATTGTAG+TGG | - | chr1_1:79253375-79253394 | Msa0046830:CDS | 25.0% |
| !!! | TTCAATGTTTGTTTTACCAT+CGG | - | chr1_1:79253593-79253612 | Msa0046830:intron | 25.0% |
| !!! | TAAATTGCAATGGCTATTTT+AGG | - | chr1_1:79253627-79253646 | Msa0046830:intron | 25.0% |
| ! | CATACTCACAGAAAATATAT+GGG | + | chr1_1:79253701-79253720 | None:intergenic | 25.0% |
| ! | ACATACTCACAGAAAATATA+TGG | + | chr1_1:79253702-79253721 | None:intergenic | 25.0% |
| ! | GTAGTTAGATACTTAGATTA+AGG | - | chr1_1:79253931-79253950 | Msa0046830:intron | 25.0% |
| !!! | ACAAATATGATTGGTTTACT+TGG | - | chr1_1:79253995-79254014 | Msa0046830:intron | 25.0% |
| ! | AATCACTATGTTCTTAAATC+TGG | - | chr1_1:79254035-79254054 | Msa0046830:intron | 25.0% |
| ! | TAAGAATCACTAAACATAGA+AGG | + | chr1_1:79254101-79254120 | None:intergenic | 25.0% |
| ! | CTATGTTTAGTGATTCTTAA+TGG | - | chr1_1:79254102-79254121 | Msa0046830:CDS | 25.0% |
| ! | TTAATCTCTTAATCCCTTTA+TGG | - | chr1_1:79254334-79254353 | Msa0046830:CDS | 25.0% |
| !!! | TTTTGAATTACAGTTTTGGA+CGG | - | chr1_1:79254367-79254386 | Msa0046830:CDS | 25.0% |
| ! | TGATAAACATATTTGATGTG+AGG | - | chr1_1:79254793-79254812 | Msa0046830:CDS | 25.0% |
| !! | TAAAGTGATGAGAGATTTTA+AGG | - | chr1_1:79254821-79254840 | Msa0046830:CDS | 25.0% |
| !! | AAAGTGATGAGAGATTTTAA+GGG | - | chr1_1:79254822-79254841 | Msa0046830:CDS | 25.0% |
| ! | ATGCAAATTCATCACTAAAT+TGG | + | chr1_1:79254965-79254984 | None:intergenic | 25.0% |
| !!! | AAAATATAATGGATTTCAGC+TGG | - | chr1_1:79255109-79255128 | Msa0046830:CDS | 25.0% |
| ! | AATAAATACATACACACATG+AGG | + | chr1_1:79255276-79255295 | None:intergenic | 25.0% |
| ! | ATAGAGTAGATACTAATATC+AGG | + | chr1_1:79255623-79255642 | None:intergenic | 25.0% |
| ! | ATATTAGTATCTACTCTATG+CGG | - | chr1_1:79255624-79255643 | Msa0046830:intron | 25.0% |
| ! | AAGTCAACATTTAATAGCTA+CGG | + | chr1_1:79255957-79255976 | None:intergenic | 25.0% |
| ! | TGGATAACCAATATAAACAT+GGG | + | chr1_1:79255996-79256015 | None:intergenic | 25.0% |
| ! | ATGGATAACCAATATAAACA+TGG | + | chr1_1:79255997-79256016 | None:intergenic | 25.0% |
| !! | TGGAAAATGGATTCAATATA+TGG | - | chr1_1:79256064-79256083 | Msa0046830:intron | 25.0% |
| ! | TTCAATATATGGTCTTTCAA+TGG | - | chr1_1:79256075-79256094 | Msa0046830:intron | 25.0% |
| !! | ATTTTATCCGTGTATTACAA+TGG | - | chr1_1:79256166-79256185 | Msa0046830:CDS | 25.0% |
| ! | TTGGATGTACAATGTTTATA+TGG | - | chr1_1:79256204-79256223 | Msa0046830:CDS | 25.0% |
| ! | TTAGTAAAGCTACTGAAAAA+AGG | + | chr1_1:79256335-79256354 | None:intergenic | 25.0% |
| !!! | TGTTTTGTTGATTTAGGGTT+TGG | + | chr1_1:79252861-79252880 | None:intergenic | 30.0% |
| !!! | GAACGATGTTTTGTTGATTT+AGG | + | chr1_1:79252867-79252886 | None:intergenic | 30.0% |
| !! | AGCATTGATTAATATACCTG+AGG | + | chr1_1:79253238-79253257 | None:intergenic | 30.0% |
| !! | AAAGAGTATCTATTTACCTG+AGG | + | chr1_1:79253562-79253581 | None:intergenic | 30.0% |
| TTGATGAGGTTAAATTGCAA+TGG | - | chr1_1:79253617-79253636 | Msa0046830:intron | 30.0% | |
| ! | ATGGTCTTTATTTCTCTCAA+AGG | - | chr1_1:79254121-79254140 | Msa0046830:CDS | 30.0% |
| TTACAGCACGTTTATAAACA+GGG | + | chr1_1:79254256-79254275 | None:intergenic | 30.0% | |
| !!! | AAGCTTATTGATTTTTCACC+TGG | - | chr1_1:79254629-79254648 | Msa0046830:intron | 30.0% |
| ATTTCACGAAAAGCTCAAAA+TGG | + | chr1_1:79254737-79254756 | None:intergenic | 30.0% | |
| AGAGAAAGAATGTTGTAGTT+AGG | + | chr1_1:79254764-79254783 | None:intergenic | 30.0% | |
| TACAACATTCTTTCTCTAGA+GGG | - | chr1_1:79254767-79254786 | Msa0046830:CDS | 30.0% | |
| !!! | TGCATTTTTTTCTTTGCAGA+TGG | - | chr1_1:79254980-79254999 | Msa0046830:intron | 30.0% |
| AAGATGATAAGTACTTTGCA+AGG | - | chr1_1:79255013-79255032 | Msa0046830:intron | 30.0% | |
| CGTTGACAAAAAATCTTTGA+AGG | - | chr1_1:79255083-79255102 | Msa0046830:CDS | 30.0% | |
| GGAACAAACAATGAAATGAT+GGG | + | chr1_1:79255147-79255166 | None:intergenic | 30.0% | |
| AGGAACAAACAATGAAATGA+TGG | + | chr1_1:79255148-79255167 | None:intergenic | 30.0% | |
| ATAAGATCATTGCATTTGCT+TGG | - | chr1_1:79255549-79255568 | Msa0046830:intron | 30.0% | |
| TAAGATCATTGCATTTGCTT+GGG | - | chr1_1:79255550-79255569 | Msa0046830:intron | 30.0% | |
| !! | CATAGATTTGCTGTTATTCA+TGG | - | chr1_1:79255584-79255603 | Msa0046830:intron | 30.0% |
| AGATACTAATATCAGGCTTA+GGG | + | chr1_1:79255616-79255635 | None:intergenic | 30.0% | |
| TAGATACTAATATCAGGCTT+AGG | + | chr1_1:79255617-79255636 | None:intergenic | 30.0% | |
| AAAATGTTCAGTATTAGCCA+TGG | + | chr1_1:79255807-79255826 | None:intergenic | 30.0% | |
| TTTATGCAACTGATGTTGAA+TGG | - | chr1_1:79255825-79255844 | Msa0046830:intron | 30.0% | |
| TTATGCAACTGATGTTGAAT+GGG | - | chr1_1:79255826-79255845 | Msa0046830:intron | 30.0% | |
| TAGATAATATACCTTCCAGT+TGG | + | chr1_1:79255854-79255873 | None:intergenic | 30.0% | |
| AAGCAATATCAACACACATT+TGG | + | chr1_1:79255878-79255897 | None:intergenic | 30.0% | |
| GGATAACCAATATAAACATG+GGG | + | chr1_1:79255995-79256014 | None:intergenic | 30.0% | |
| AACATACCTGTCGTATAAAA+TGG | + | chr1_1:79256016-79256035 | None:intergenic | 30.0% | |
| TGTAACTTCAGTTCATGAAA+TGG | - | chr1_1:79256044-79256063 | Msa0046830:intron | 30.0% | |
| TCAGTTCATGAAATGGAAAA+TGG | - | chr1_1:79256051-79256070 | Msa0046830:intron | 30.0% | |
| TCAATGGCAAACATCTTTAT+CGG | - | chr1_1:79256091-79256110 | Msa0046830:intron | 30.0% | |
| ACATCTTTATCGGATATTGA+AGG | - | chr1_1:79256101-79256120 | Msa0046830:intron | 30.0% | |
| TACATCCAAAAGTCATTCTT+TGG | + | chr1_1:79256193-79256212 | None:intergenic | 30.0% | |
| ! | AAAACTTTTACAGCCAACAA+TGG | + | chr1_1:79256259-79256278 | None:intergenic | 30.0% |
| !! | AAAAAGGCTTTTGGAAACAA+GGG | + | chr1_1:79256319-79256338 | None:intergenic | 30.0% |
| !! | AAAAAAGGCTTTTGGAAACA+AGG | + | chr1_1:79256320-79256339 | None:intergenic | 30.0% |
| !!! | TACAGCAATTTTTGGTTTGT+GGG | + | chr1_1:79256372-79256391 | None:intergenic | 30.0% |
| !! | TTGTCCGATTATTGTTTTAC+AGG | - | chr1_1:79257057-79257076 | Msa0046830:five_prime_UTR | 30.0% |
| TAGGCCTGTAAAACAATAAT+CGG | + | chr1_1:79257064-79257083 | None:intergenic | 30.0% | |
| AATGGATATGTCTGTGGATT+GGG | + | chr1_1:79252827-79252846 | None:intergenic | 35.0% | |
| AAATGGATATGTCTGTGGAT+TGG | + | chr1_1:79252828-79252847 | None:intergenic | 35.0% | |
| AATCCACAGACATATCCATT+TGG | - | chr1_1:79252827-79252846 | Msa0046830:three_prime_UTR | 35.0% | |
| !! | TTTGTTGATTTAGGGTTTGG+AGG | + | chr1_1:79252858-79252877 | None:intergenic | 35.0% |
| GATGAAGAGAAGAGAATCTA+GGG | + | chr1_1:79252965-79252984 | None:intergenic | 35.0% | |
| AGATGAAGAGAAGAGAATCT+AGG | + | chr1_1:79252966-79252985 | None:intergenic | 35.0% | |
| TGACGATGATGTTATTCAAG+AGG | - | chr1_1:79253330-79253349 | Msa0046830:CDS | 35.0% | |
| TGTTATTCAAGAGGAGAATC+TGG | - | chr1_1:79253339-79253358 | Msa0046830:CDS | 35.0% | |
| !! | TCAGATTGGTGCTATTAAAG+AGG | - | chr1_1:79253465-79253484 | Msa0046830:CDS | 35.0% |
| !! | ATTGGTGCTATTAAAGAGGA+TGG | - | chr1_1:79253469-79253488 | Msa0046830:intron | 35.0% |
| ! | TTTTCAGTAGAAGGATCAAC+AGG | + | chr1_1:79253505-79253524 | None:intergenic | 35.0% |
| ATTTAACCTCATCAAACCGA+TGG | + | chr1_1:79253612-79253631 | None:intergenic | 35.0% | |
| AGAGATATAATCATTACCCC+TGG | + | chr1_1:79253793-79253812 | None:intergenic | 35.0% | |
| ! | TCATTTGAGACCACCATATT+AGG | - | chr1_1:79253833-79253852 | Msa0046830:CDS | 35.0% |
| AGACCACCATATTAGGATTA+TGG | - | chr1_1:79253840-79253859 | Msa0046830:CDS | 35.0% | |
| GACCACCATATTAGGATTAT+GGG | - | chr1_1:79253841-79253860 | Msa0046830:CDS | 35.0% | |
| !! | AAGTGGTGCCTATTTGTTTT+TGG | + | chr1_1:79253888-79253907 | None:intergenic | 35.0% |
| ! | GGCAATTTCATGTTTTCTCA+TGG | - | chr1_1:79253952-79253971 | Msa0046830:intron | 35.0% |
| TTGTAATTCTACAAGGAGTG+TGG | + | chr1_1:79253979-79253998 | None:intergenic | 35.0% | |
| AACATAGTGATTGAACGTTG+GGG | + | chr1_1:79254027-79254046 | None:intergenic | 35.0% | |
| GAACATAGTGATTGAACGTT+GGG | + | chr1_1:79254028-79254047 | None:intergenic | 35.0% | |
| AGAACATAGTGATTGAACGT+TGG | + | chr1_1:79254029-79254048 | None:intergenic | 35.0% | |
| CAAAGGAAAATCTGCAACAA+TGG | - | chr1_1:79254138-79254157 | Msa0046830:CDS | 35.0% | |
| CTTACAGCACGTTTATAAAC+AGG | + | chr1_1:79254257-79254276 | None:intergenic | 35.0% | |
| ! | TTTTGTACAATGGTCACCTT+TGG | - | chr1_1:79254394-79254413 | Msa0046830:CDS | 35.0% |
| TTTGTACAATGGTCACCTTT+GGG | - | chr1_1:79254395-79254414 | Msa0046830:CDS | 35.0% | |
| CTACAACATTCTTTCTCTAG+AGG | - | chr1_1:79254766-79254785 | Msa0046830:CDS | 35.0% | |
| AACATATTTGATGTGAGGAC+TGG | - | chr1_1:79254798-79254817 | Msa0046830:CDS | 35.0% | |
| !!! | AGTGCTGATGATTTTGCTAT+CGG | - | chr1_1:79254846-79254865 | Msa0046830:CDS | 35.0% |
| AGAGAGATGTACTTGAAAAC+AGG | + | chr1_1:79254903-79254922 | None:intergenic | 35.0% | |
| !!! | TTTTTTCTTTGCAGATGGAG+TGG | - | chr1_1:79254985-79255004 | Msa0046830:intron | 35.0% |
| TGATAAGTACTTTGCAAGGA+TGG | - | chr1_1:79255017-79255036 | Msa0046830:CDS | 35.0% | |
| GATAAGTACTTTGCAAGGAT+GGG | - | chr1_1:79255018-79255037 | Msa0046830:CDS | 35.0% | |
| ! | AATGAAATGATGGGATCAGT+TGG | + | chr1_1:79255138-79255157 | None:intergenic | 35.0% |
| AAACAGAAATTTACCCTAGC+AGG | + | chr1_1:79255192-79255211 | None:intergenic | 35.0% | |
| CATTACACATGACCATAGAA+GGG | + | chr1_1:79255220-79255239 | None:intergenic | 35.0% | |
| !! | TCTGTTCTTGATGGATTTGT+AGG | - | chr1_1:79255307-79255326 | Msa0046830:intron | 35.0% |
| AACGATCAACATTAACAGCA+AGG | + | chr1_1:79255430-79255449 | None:intergenic | 35.0% | |
| ! | GAATGTGCTTTTCTTTGTCT+TGG | + | chr1_1:79255456-79255475 | None:intergenic | 35.0% |
| ! | ACAAAGAAAAGCACATTCAC+AGG | - | chr1_1:79255458-79255477 | Msa0046830:CDS | 35.0% |
| ! | CTTTGAGCTTTTCCGTATAA+AGG | - | chr1_1:79255481-79255500 | Msa0046830:CDS | 35.0% |
| GTATGTCACGTTCCTTTATA+CGG | + | chr1_1:79255496-79255515 | None:intergenic | 35.0% | |
| TGACATACCTATTGAAGTTC+TGG | - | chr1_1:79255508-79255527 | Msa0046830:CDS | 35.0% | |
| ATTGTACTAGCAGGATTGAA+AGG | - | chr1_1:79255737-79255756 | Msa0046830:CDS | 35.0% | |
| ! | TGTGTTGATATTGCTTACCA+AGG | - | chr1_1:79255882-79255901 | Msa0046830:intron | 35.0% |
| TTATCCATGATCTTCAACCT+TGG | + | chr1_1:79255902-79255921 | None:intergenic | 35.0% | |
| ACTGATCCCCATGTTTATAT+TGG | - | chr1_1:79255986-79256005 | Msa0046830:intron | 35.0% | |
| ! | GGTTATCCATTTTATACGAC+AGG | - | chr1_1:79256007-79256026 | Msa0046830:intron | 35.0% |
| ATTGAAGGATCACTTCTTTC+AGG | - | chr1_1:79256116-79256135 | Msa0046830:intron | 35.0% | |
| CTTTGGACCATTGTAATACA+CGG | + | chr1_1:79256176-79256195 | None:intergenic | 35.0% | |
| ! | ATGGTCCAAAGAATGACTTT+TGG | - | chr1_1:79256185-79256204 | Msa0046830:CDS | 35.0% |
| ! | AGCTACTGAAAAAAGGCTTT+TGG | + | chr1_1:79256328-79256347 | None:intergenic | 35.0% |
| !!! | GTACAGCAATTTTTGGTTTG+TGG | + | chr1_1:79256373-79256392 | None:intergenic | 35.0% |
| TAGGGTCTTGAAAGAAGATT+GGG | - | chr1_1:79256585-79256604 | Msa0046830:intron | 35.0% | |
| CATTGAAGTTGAGGAAATAG+TGG | - | chr1_1:79256717-79256736 | Msa0046830:CDS | 35.0% | |
| TAGTTATCCTAGTAGCTAGT+TGG | - | chr1_1:79256845-79256864 | Msa0046830:five_prime_UTR | 35.0% | |
| AGTTATCCTAGTAGCTAGTT+GGG | - | chr1_1:79256846-79256865 | Msa0046830:five_prime_UTR | 35.0% | |
| GTCTACAAAGATGAACACAA+AGG | + | chr1_1:79256878-79256897 | None:intergenic | 35.0% | |
| AACAGACTTGTGTCTGAAAA+GGG | + | chr1_1:79256986-79257005 | None:intergenic | 35.0% | |
| TAACAGACTTGTGTCTGAAA+AGG | + | chr1_1:79256987-79257006 | None:intergenic | 35.0% | |
| CTAGCATTTAAGTGCTAAGA+TGG | + | chr1_1:79257025-79257044 | None:intergenic | 35.0% | |
| TTTACAGGCCTATGTTATCA+TGG | - | chr1_1:79257072-79257091 | Msa0046830:five_prime_UTR | 35.0% | |
| ACCATAGTCCATGATAACAT+AGG | + | chr1_1:79257083-79257102 | None:intergenic | 35.0% | |
| CTTCCAAATGGATATGTCTG+TGG | + | chr1_1:79252833-79252852 | None:intergenic | 40.0% | |
| GAAGACAAAGCTTTGCTTCT+CGG | - | chr1_1:79253149-79253168 | Msa0046830:CDS | 40.0% | |
| AATGGAATCGAGATCGATAG+AGG | + | chr1_1:79253186-79253205 | None:intergenic | 40.0% | |
| ! | GAGAATCTGGAGTTTGATTC+TGG | - | chr1_1:79253352-79253371 | Msa0046830:CDS | 40.0% |
| CTGGAGTTTGATTCTGGATT+TGG | - | chr1_1:79253358-79253377 | Msa0046830:CDS | 40.0% | |
| TAATCTACCTGTTGTTCCCA+AGG | - | chr1_1:79253399-79253418 | Msa0046830:CDS | 40.0% | |
| AATTTCTCCTTGGGAACAAC+AGG | + | chr1_1:79253409-79253428 | None:intergenic | 40.0% | |
| AGCTTCTCGAATTTCTCCTT+GGG | + | chr1_1:79253418-79253437 | None:intergenic | 40.0% | |
| AAGCTTCTCGAATTTCTCCT+TGG | + | chr1_1:79253419-79253438 | None:intergenic | 40.0% | |
| CTATTAAAGAGGATGGTCTC+TGG | - | chr1_1:79253476-79253495 | Msa0046830:intron | 40.0% | |
| TCCTTCTACTGAAAAGTCCT+TGG | - | chr1_1:79253510-79253529 | Msa0046830:intron | 40.0% | |
| CCTTCTACTGAAAAGTCCTT+GGG | - | chr1_1:79253511-79253530 | Msa0046830:intron | 40.0% | |
| CATTGAGTACAATACTCCTC+AGG | - | chr1_1:79253543-79253562 | Msa0046830:intron | 40.0% | |
| !!! | GTTTTACCATCGGTTTGATG+AGG | - | chr1_1:79253603-79253622 | Msa0046830:intron | 40.0% |
| CTTGCTAAAGAGAAGACTCA+AGG | - | chr1_1:79253658-79253677 | Msa0046830:intron | 40.0% | |
| GAAGACTCAAGGATACAAAC+TGG | - | chr1_1:79253669-79253688 | Msa0046830:intron | 40.0% | |
| CAAACAAGGAATATGCTCCA+GGG | - | chr1_1:79253773-79253792 | Msa0046830:intron | 40.0% | |
| AAACAAGGAATATGCTCCAG+GGG | - | chr1_1:79253774-79253793 | Msa0046830:intron | 40.0% | |
| CTCCCATAATCCTAATATGG+TGG | + | chr1_1:79253846-79253865 | None:intergenic | 40.0% | |
| GGTCTCCCATAATCCTAATA+TGG | + | chr1_1:79253849-79253868 | None:intergenic | 40.0% | |
| ACAATGGCTTACTGATGCTA+AGG | - | chr1_1:79254154-79254173 | Msa0046830:CDS | 40.0% | |
| ! | GTTCAGATACTGAGGTTTTG+TGG | - | chr1_1:79254204-79254223 | Msa0046830:CDS | 40.0% |
| AGCACGTTTATAAACAGGGT+CGG | + | chr1_1:79254252-79254271 | None:intergenic | 40.0% | |
| !! | TTCACCTGGTGAGAAGTATT+TGG | - | chr1_1:79254643-79254662 | Msa0046830:intron | 40.0% |
| GTTACCAAATACTTCTCACC+AGG | + | chr1_1:79254650-79254669 | None:intergenic | 40.0% | |
| TCATTGTTTGTTCCTGAGAC+AGG | - | chr1_1:79255153-79255172 | Msa0046830:intron | 40.0% | |
| ! | TCTGTTTTCCTTCCCTTCTA+TGG | - | chr1_1:79255205-79255224 | Msa0046830:intron | 40.0% |
| CCATTACACATGACCATAGA+AGG | + | chr1_1:79255221-79255240 | None:intergenic | 40.0% | |
| CCTTCTATGGTCATGTGTAA+TGG | - | chr1_1:79255218-79255237 | Msa0046830:CDS | 40.0% | |
| ACAGCAAATCTATGTCCCTT+TGG | + | chr1_1:79255578-79255597 | None:intergenic | 40.0% | |
| TAGTATCTACTCTATGCGGA+CGG | - | chr1_1:79255628-79255647 | Msa0046830:intron | 40.0% | |
| !! | GAGTAGTGAGCTTTGAAACT+CGG | + | chr1_1:79255667-79255686 | None:intergenic | 40.0% |
| TCAAAGCTCACTACTCTGAA+AGG | - | chr1_1:79255671-79255690 | Msa0046830:CDS | 40.0% | |
| !!! | AGCAGGCAAATGCTTTGTTT+TGG | - | chr1_1:79255696-79255715 | Msa0046830:CDS | 40.0% |
| GCAGGATTGAAAGGTTTCAA+TGG | - | chr1_1:79255746-79255765 | Msa0046830:CDS | 40.0% | |
| !! | GAAAGGTTTCAATGGACTGT+TGG | - | chr1_1:79255754-79255773 | Msa0046830:CDS | 40.0% |
| ! | TGTTGATGAGCTTGAAACCA+TGG | - | chr1_1:79255787-79255806 | Msa0046830:intron | 40.0% |
| CTTACCAAGGTTGAAGATCA+TGG | - | chr1_1:79255895-79255914 | Msa0046830:intron | 40.0% | |
| TGGGATTGTGAATCCATTGT+TGG | - | chr1_1:79256243-79256262 | Msa0046830:CDS | 40.0% | |
| TCAGCAGCAATGAAACATCT+TGG | + | chr1_1:79256543-79256562 | None:intergenic | 40.0% | |
| GTAGGGTCTTGAAAGAAGAT+TGG | - | chr1_1:79256584-79256603 | Msa0046830:intron | 40.0% | |
| TGAAAGAAGATTGGGACAAG+TGG | - | chr1_1:79256593-79256612 | Msa0046830:intron | 40.0% | |
| GAAAGAAGATTGGGACAAGT+GGG | - | chr1_1:79256594-79256613 | Msa0046830:intron | 40.0% | |
| ATGCAACAGCTTCCATTCAT+TGG | + | chr1_1:79256620-79256639 | None:intergenic | 40.0% | |
| ATGAAGAAGAGAAGCTAGAG+AGG | - | chr1_1:79256638-79256657 | Msa0046830:intron | 40.0% | |
| TGAAGAAGAGAAGCTAGAGA+GGG | - | chr1_1:79256639-79256658 | Msa0046830:intron | 40.0% | |
| TTCCTCAACTTCAATGTCCT+TGG | + | chr1_1:79256713-79256732 | None:intergenic | 40.0% | |
| CTCAACTTGAAGGATCTCTT+TGG | + | chr1_1:79256749-79256768 | None:intergenic | 40.0% | |
| !! | CAAAGAGATCCTTCAAGTTG+AGG | - | chr1_1:79256747-79256766 | Msa0046830:CDS | 40.0% |
| GCTAATACTCCTCAACTTGA+AGG | + | chr1_1:79256759-79256778 | None:intergenic | 40.0% | |
| !! | TAGCCATGTTTTCAAGAGTG+AGG | - | chr1_1:79256775-79256794 | Msa0046830:CDS | 40.0% |
| GTATGTAACTGGCTAGTAGA+TGG | - | chr1_1:79256805-79256824 | Msa0046830:exon | 40.0% | |
| ! | GCCTATGTTATCATGGACTA+TGG | - | chr1_1:79257079-79257098 | Msa0046830:five_prime_UTR | 40.0% |
| !! | ATATGTCTGTGGATTGGGCT+CGG | + | chr1_1:79252822-79252841 | None:intergenic | 45.0% |
| AATCGGTAGAGTTAGCGCAA+GGG | + | chr1_1:79252892-79252911 | None:intergenic | 45.0% | |
| CAGCCAGGTTTAGTTGTTGA+CGG | + | chr1_1:79252919-79252938 | None:intergenic | 45.0% | |
| GGATTCTTACCGTTTACCGA+CGG | + | chr1_1:79252944-79252963 | None:intergenic | 45.0% | |
| TTAGCGTTGTCGCAGTGAAA+TGG | + | chr1_1:79253063-79253082 | None:intergenic | 45.0% | |
| GCGACAACGCTAAAGCTTTA+CGG | - | chr1_1:79253070-79253089 | Msa0046830:three_prime_UTR | 45.0% | |
| ATTGCGGTCGTGAGTGATTA+TGG | + | chr1_1:79253098-79253117 | None:intergenic | 45.0% | |
| CATTACATCCGCCATGATTG+CGG | + | chr1_1:79253114-79253133 | None:intergenic | 45.0% | |
| ! | CCCAAGGACTTTTCAGTAGA+AGG | + | chr1_1:79253514-79253533 | None:intergenic | 45.0% |
| CTCAATGAAGCAGTAACCCA+AGG | + | chr1_1:79253530-79253549 | None:intergenic | 45.0% | |
| ! | GCATATTCCTTGTTTGGAGG+AGG | + | chr1_1:79253769-79253788 | None:intergenic | 45.0% |
| ! | GGAGCATATTCCTTGTTTGG+AGG | + | chr1_1:79253772-79253791 | None:intergenic | 45.0% |
| CCTGGAGCATATTCCTTGTT+TGG | + | chr1_1:79253775-79253794 | None:intergenic | 45.0% | |
| CCAAACAAGGAATATGCTCC+AGG | - | chr1_1:79253772-79253791 | Msa0046830:intron | 45.0% | |
| AACCAGCACGAATCACAAAC+TGG | + | chr1_1:79254187-79254206 | None:intergenic | 45.0% | |
| GCACGTTTATAAACAGGGTC+GGG | + | chr1_1:79254251-79254270 | None:intergenic | 45.0% | |
| !! | GGACGGAGAGTTTTGTACAA+TGG | - | chr1_1:79254384-79254403 | Msa0046830:CDS | 45.0% |
| GTCACCTTTGGGTACTTACT+TGG | - | chr1_1:79254406-79254425 | Msa0046830:CDS | 45.0% | |
| GTTGCCAAGTAAGTACCCAA+AGG | + | chr1_1:79254413-79254432 | None:intergenic | 45.0% | |
| GTAACGCATGAGACGATTGA+AGG | + | chr1_1:79254477-79254496 | None:intergenic | 45.0% | |
| TTAGCATCTCGAGGATTGCT+TGG | + | chr1_1:79254689-79254708 | None:intergenic | 45.0% | |
| ACACTCACATTAGCATCTCG+AGG | + | chr1_1:79254698-79254717 | None:intergenic | 45.0% | |
| !! | GCTGATGATTTTGCTATCGG+AGG | - | chr1_1:79254849-79254868 | Msa0046830:CDS | 45.0% |
| !! | GATTTTGCTATCGGAGGTAC+TGG | - | chr1_1:79254855-79254874 | Msa0046830:CDS | 45.0% |
| TTTCTTTGCAGATGGAGTGG+TGG | - | chr1_1:79254988-79255007 | Msa0046830:intron | 45.0% | |
| TTGTTTGTTCCTGAGACAGG+AGG | - | chr1_1:79255156-79255175 | Msa0046830:intron | 45.0% | |
| AGAAATTTACCCTAGCAGGC+TGG | + | chr1_1:79255188-79255207 | None:intergenic | 45.0% | |
| ACACATGACCATAGAAGGGA+AGG | + | chr1_1:79255216-79255235 | None:intergenic | 45.0% | |
| TGCCTGAGTTCTTCTTTGCT+GGG | + | chr1_1:79255350-79255369 | None:intergenic | 45.0% | |
| TTGCCTGAGTTCTTCTTTGC+TGG | + | chr1_1:79255351-79255370 | None:intergenic | 45.0% | |
| TCAGTGACTGCAAGATGTAC+TGG | - | chr1_1:79255387-79255406 | Msa0046830:intron | 45.0% | |
| ! | AAGATGTACTGGCAGAGCAA+TGG | - | chr1_1:79255398-79255417 | Msa0046830:intron | 45.0% |
| TCGAGCTCCAGAACTTCAAT+AGG | + | chr1_1:79255518-79255537 | None:intergenic | 45.0% | |
| GATGTTGAATGGGATCCAAC+TGG | - | chr1_1:79255836-79255855 | Msa0046830:intron | 45.0% | |
| TTGAATGGGATCCAACTGGA+AGG | - | chr1_1:79255840-79255859 | Msa0046830:intron | 45.0% | |
| CTTCTCAGCAGTCAAGAAAG+AGG | + | chr1_1:79256464-79256483 | None:intergenic | 45.0% | |
| CTCTTTCTTGACTGCTGAGA+AGG | - | chr1_1:79256462-79256481 | Msa0046830:CDS | 45.0% | |
| TTTCTTGACTGCTGAGAAGG+AGG | - | chr1_1:79256465-79256484 | Msa0046830:CDS | 45.0% | |
| AGCTAGAGAGGGAAAATCTG+AGG | - | chr1_1:79256650-79256669 | Msa0046830:intron | 45.0% | |
| GCTAGAGAGGGAAAATCTGA+GGG | - | chr1_1:79256651-79256670 | Msa0046830:intron | 45.0% | |
| AGAAGCTAGTGATGAGGAAG+AGG | - | chr1_1:79256678-79256697 | Msa0046830:intron | 45.0% | |
| GGAAGAGGAATATGAAGCCA+AGG | - | chr1_1:79256693-79256712 | Msa0046830:CDS | 45.0% | |
| AGCCAAGGACATTGAAGTTG+AGG | - | chr1_1:79256708-79256727 | Msa0046830:CDS | 45.0% | |
| TCGCCTCACTCTTGAAAACA+TGG | + | chr1_1:79256781-79256800 | None:intergenic | 45.0% | |
| ! | GAGGCGAAGAAGTATGTAAC+TGG | - | chr1_1:79256794-79256813 | Msa0046830:exon | 45.0% |
| GGTTTGGAGGCTCTTCCAAA+TGG | + | chr1_1:79252845-79252864 | None:intergenic | 50.0% | |
| ATCGGTAGAGTTAGCGCAAG+GGG | + | chr1_1:79252891-79252910 | None:intergenic | 50.0% | |
| CAATCGGTAGAGTTAGCGCA+AGG | + | chr1_1:79252893-79252912 | None:intergenic | 50.0% | |
| TAGTTGTTGACGGCGGCAAT+CGG | + | chr1_1:79252909-79252928 | None:intergenic | 50.0% | |
| CCAGGTTTAGTTGTTGACGG+CGG | + | chr1_1:79252916-79252935 | None:intergenic | 50.0% | |
| ATCACTCACGACCGCAATCA+TGG | - | chr1_1:79253100-79253119 | Msa0046830:three_prime_UTR | 50.0% | |
| GATTCCATTCACCTTCCTCC+AGG | - | chr1_1:79253197-79253216 | Msa0046830:CDS | 50.0% | |
| !! | TCATGAAAGTGCCAGACGAG+TGG | - | chr1_1:79253740-79253759 | Msa0046830:intron | 50.0% |
| !! | CATGAAAGTGCCAGACGAGT+GGG | - | chr1_1:79253741-79253760 | Msa0046830:intron | 50.0% |
| ACAACCAAGTAGCACGCAAG+TGG | + | chr1_1:79253905-79253924 | None:intergenic | 50.0% | |
| GACCAGTTTGTGATTCGTGC+TGG | - | chr1_1:79254182-79254201 | Msa0046830:CDS | 50.0% | |
| !! | TCGTGCTGGTTCAGATACTG+AGG | - | chr1_1:79254196-79254215 | Msa0046830:CDS | 50.0% |
| TTGGCAACAGTTCACCGTCA+GGG | - | chr1_1:79254425-79254444 | Msa0046830:CDS | 50.0% | |
| ACGCATGAGACGATTGAAGG+TGG | + | chr1_1:79254474-79254493 | None:intergenic | 50.0% | |
| CTCGAGGATTGCTTGGTTCA+TGG | + | chr1_1:79254682-79254701 | None:intergenic | 50.0% | |
| !! | TTTGCTATCGGAGGTACTGG+AGG | - | chr1_1:79254858-79254877 | Msa0046830:CDS | 50.0% |
| TTTGTTCCTGAGACAGGAGG+TGG | - | chr1_1:79255159-79255178 | Msa0046830:intron | 50.0% | |
| TCCCCAGCAAAGAAGAACTC+AGG | - | chr1_1:79255345-79255364 | Msa0046830:intron | 50.0% | |
| GCCTGAGTTCTTCTTTGCTG+GGG | + | chr1_1:79255349-79255368 | None:intergenic | 50.0% | |
| TGCATTTGCTTGGGAGCCAA+AGG | - | chr1_1:79255559-79255578 | Msa0046830:intron | 50.0% | |
| GCATTTGCTTGGGAGCCAAA+GGG | - | chr1_1:79255560-79255579 | Msa0046830:intron | 50.0% | |
| ! | CACTACTCTGAAAGGCAAGC+AGG | - | chr1_1:79255679-79255698 | Msa0046830:CDS | 50.0% |
| !!! | GCTTTGTTTTGGTCACCAGC+AGG | - | chr1_1:79255707-79255726 | Msa0046830:CDS | 50.0% |
| AGTACAATGAAGCGACCTGC+TGG | + | chr1_1:79255725-79255744 | None:intergenic | 50.0% | |
| GGTCGCTTCATTGTACTAGC+AGG | - | chr1_1:79255728-79255747 | Msa0046830:CDS | 50.0% | |
| !! | GTCAAGAAAGAGGCTGGTCT+GGG | + | chr1_1:79256454-79256473 | None:intergenic | 50.0% |
| ! | AGTCAAGAAAGAGGCTGGTC+TGG | + | chr1_1:79256455-79256474 | None:intergenic | 50.0% |
| TCAGCAGTCAAGAAAGAGGC+TGG | + | chr1_1:79256460-79256479 | None:intergenic | 50.0% | |
| ! | AACAAGAGCGTGAGAAGCGT+AGG | - | chr1_1:79256566-79256585 | Msa0046830:CDS | 50.0% |
| ! | ACAAGAGCGTGAGAAGCGTA+GGG | - | chr1_1:79256567-79256586 | Msa0046830:CDS | 50.0% |
| GAGAGGGAAAATCTGAGGGA+CGG | - | chr1_1:79256655-79256674 | Msa0046830:intron | 50.0% | |
| ACACTGCCCAACTAGCTACT+AGG | + | chr1_1:79256855-79256874 | None:intergenic | 50.0% | |
| CCGCCGTCAACAACTAAACC+TGG | - | chr1_1:79252913-79252932 | Msa0046830:three_prime_UTR | 55.0% | |
| ACTAAACCTGGCTGTGCCGT+CGG | - | chr1_1:79252925-79252944 | Msa0046830:three_prime_UTR | 55.0% | |
| ACTCACGACCGCAATCATGG+CGG | - | chr1_1:79253103-79253122 | Msa0046830:three_prime_UTR | 55.0% | |
| GTCACCTGGAGGAAGGTGAA+TGG | + | chr1_1:79253204-79253223 | None:intergenic | 55.0% | |
| CTTCCTCCAGGTGACAACTG+CGG | - | chr1_1:79253209-79253228 | Msa0046830:CDS | 55.0% | |
| ATTCCGCAGTTGTCACCTGG+AGG | + | chr1_1:79253215-79253234 | None:intergenic | 55.0% | |
| AGGATTCCGCAGTTGTCACC+TGG | + | chr1_1:79253218-79253237 | None:intergenic | 55.0% | |
| GTGACAACTGCGGAATCCTC+AGG | - | chr1_1:79253219-79253238 | Msa0046830:CDS | 55.0% | |
| CTTGGCAACAGTTCACCGTC+AGG | - | chr1_1:79254424-79254443 | Msa0046830:CDS | 55.0% | |
| TGGCAACAGTTCACCGTCAG+GGG | - | chr1_1:79254426-79254445 | Msa0046830:CDS | 55.0% | |
| CATGCGTTACGCACATCCTC+AGG | - | chr1_1:79254487-79254506 | Msa0046830:CDS | 55.0% | |
| !! | GAGGTGTCACTGGAGTGTCA+TGG | - | chr1_1:79254877-79254896 | Msa0046830:CDS | 55.0% |
| TGGTTACCACCTCCTGTCTC+AGG | + | chr1_1:79255168-79255187 | None:intergenic | 55.0% | |
| AGGTGGTAACCAGCCTGCTA+GGG | - | chr1_1:79255176-79255195 | Msa0046830:intron | 55.0% | |
| GGGACAAGTGGGCCAATGAA+TGG | - | chr1_1:79256605-79256624 | Msa0046830:intron | 55.0% | |
| GGACGGAGAAGCTAGTGATG+AGG | - | chr1_1:79256672-79256691 | Msa0046830:intron | 55.0% | |
| CTGGCTGTGCCGTCGGTAAA+CGG | - | chr1_1:79252932-79252951 | Msa0046830:three_prime_UTR | 60.0% | |
| CGCAGTTGTCACCTGGAGGA+AGG | + | chr1_1:79253211-79253230 | None:intergenic | 60.0% | |
| GTGGGCTCCTCCTCCAAACA+AGG | - | chr1_1:79253759-79253778 | Msa0046830:intron | 60.0% | |
| ! | GGCACCACTTGCGTGCTACT+TGG | - | chr1_1:79253898-79253917 | Msa0046830:intron | 60.0% |
| GGCAACAGTTCACCGTCAGG+GGG | - | chr1_1:79254427-79254446 | Msa0046830:CDS | 60.0% | |
| !! | GGAGGTACTGGAGGTGTCAC+TGG | - | chr1_1:79254867-79254886 | Msa0046830:CDS | 60.0% |
| GAGGTGGTAACCAGCCTGCT+AGG | - | chr1_1:79255175-79255194 | Msa0046830:intron | 60.0% | |
| ATGCGGACGGCTCAGAACAC+TGG | - | chr1_1:79255641-79255660 | Msa0046830:intron | 60.0% | |
| CGTTTACCGACGGCACAGCC+AGG | + | chr1_1:79252934-79252953 | None:intergenic | 65.0% | |
| ACCGTCAGGGGGCAGCAGTT+TGG | - | chr1_1:79254438-79254457 | Msa0046830:CDS | 65.0% | |
| CCCAAACTGCTGCCCCCTGA+CGG | + | chr1_1:79254442-79254461 | None:intergenic | 65.0% | |
| CCGTCAGGGGGCAGCAGTTT+GGG | - | chr1_1:79254439-79254458 | Msa0046830:CDS | 65.0% | |
| CGTCAGGGGGCAGCAGTTTG+GGG | - | chr1_1:79254440-79254459 | Msa0046830:CDS | 65.0% | |
| GGAGGAGGAGCCCACTCGTC+TGG | + | chr1_1:79253754-79253773 | None:intergenic | 70.0% | |
| CAGGGGGCAGCAGTTTGGGG+AGG | - | chr1_1:79254443-79254462 | Msa0046830:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 79252819 | 79257107 | 79252819 | ID=Msa0046830;Name=Msa0046830 |
| chr1_1 | mRNA | 79252819 | 79257107 | 79252819 | ID=Msa0046830-mRNA-1;Parent=Msa0046830;Name=Msa0046830-mRNA-1;_AED=0.06;_eAED=0.06;_QI=197|1|1|1|0.90|0.83|12|330|717 |
| chr1_1 | exon | 79252819 | 79253487 | 79252819 | ID=Msa0046830-mRNA-1:exon:27313;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79253789 | 79253897 | 79253789 | ID=Msa0046830-mRNA-1:exon:27312;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79254065 | 79254597 | 79254065 | ID=Msa0046830-mRNA-1:exon:27311;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79254729 | 79254927 | 79254729 | ID=Msa0046830-mRNA-1:exon:27310;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79255016 | 79255140 | 79255016 | ID=Msa0046830-mRNA-1:exon:27309;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79255217 | 79255300 | 79255217 | ID=Msa0046830-mRNA-1:exon:27308;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79255418 | 79255546 | 79255418 | ID=Msa0046830-mRNA-1:exon:27307;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79255655 | 79255783 | 79255655 | ID=Msa0046830-mRNA-1:exon:27306;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79256131 | 79256277 | 79256131 | ID=Msa0046830-mRNA-1:exon:27305;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79256362 | 79256599 | 79256362 | ID=Msa0046830-mRNA-1:exon:27304;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79256686 | 79256869 | 79256686 | ID=Msa0046830-mRNA-1:exon:27303;Parent=Msa0046830-mRNA-1 |
| chr1_1 | exon | 79256973 | 79257107 | 79256973 | ID=Msa0046830-mRNA-1:exon:27302;Parent=Msa0046830-mRNA-1 |
| chr1_1 | five_prime_UTR | 79256973 | 79257107 | 79256973 | ID=Msa0046830-mRNA-1:five_prime_utr;Parent=Msa0046830-mRNA-1 |
| chr1_1 | five_prime_UTR | 79256808 | 79256869 | 79256808 | ID=Msa0046830-mRNA-1:five_prime_utr;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79256686 | 79256807 | 79256686 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79256362 | 79256599 | 79256362 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79256131 | 79256277 | 79256131 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79255655 | 79255783 | 79255655 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79255418 | 79255546 | 79255418 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79255217 | 79255300 | 79255217 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79255016 | 79255140 | 79255016 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79254729 | 79254927 | 79254729 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79254065 | 79254597 | 79254065 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79253789 | 79253897 | 79253789 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | CDS | 79253149 | 79253487 | 79253149 | ID=Msa0046830-mRNA-1:cds;Parent=Msa0046830-mRNA-1 |
| chr1_1 | three_prime_UTR | 79252819 | 79253148 | 79252819 | ID=Msa0046830-mRNA-1:three_prime_utr;Parent=Msa0046830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
