AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1396940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1396940 MtrunA17_Chr1g0201951 97.778 450 10 0 1 450 1 450 0.0 915
Msa1396940 MtrunA17_Chr6g0463911 71.194 427 112 5 24 445 22 442 0.0 541
Msa1396940 MtrunA17_Chr2g0328901 47.425 369 155 9 89 449 79 416 1.48e-94 292
Msa1396940 MtrunA17_Chr7g0265561 45.600 250 108 7 10 252 1 229 6.84e-59 199
Msa1396940 MtrunA17_Chr1g0179561 58.025 162 60 3 92 252 95 249 1.48e-54 189
Msa1396940 MtrunA17_Chr1g0179561 48.193 83 43 0 365 447 400 482 2.41e-19 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1396940 AT1G21200.1 57.826 460 162 10 1 447 1 441 1.29e-162 466
Msa1396940 AT1G21200.2 57.826 460 162 10 1 447 1 441 1.29e-162 466
Msa1396940 AT1G76870.2 49.888 445 152 14 7 445 2 381 4.10e-117 348
Msa1396940 AT1G76870.1 49.888 445 152 14 7 445 2 381 4.10e-117 348
Msa1396940 AT1G76870.3 49.888 445 152 14 7 445 2 381 4.10e-117 348
Msa1396940 AT3G10040.1 33.034 445 214 16 28 447 29 414 3.93e-61 205

Find 103 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGGGAGTAGAGGTAAAA+AGG 0.185988 tig0022089:+78832 Msa1396940:CDS
CAAAAGTATTAGCATGATTT+TGG 0.192898 tig0022089:-79498 None:intergenic
TGCAGTTAGCTCTCCGTAAT+AGG 0.247641 tig0022089:+79311 Msa1396940:CDS
CAAAATCATGCTAATACTTT+TGG 0.261782 tig0022089:+79499 Msa1396940:CDS
AGTATTTCAATGACAGATTA+TGG 0.262386 tig0022089:+78731 Msa1396940:CDS
TGATTTACCTGGATCAATTC+AGG 0.278938 tig0022089:+78577 Msa1396940:CDS
GTTCTTACCATAATTGTAAT+AGG 0.279481 tig0022089:+79251 Msa1396940:CDS
ATTACAGCTGTTTCTTATAT+CGG 0.281358 tig0022089:+78911 Msa1396940:CDS
CGTGGTGAGGGGCGGTTAAA+TGG 0.283530 tig0022089:+79445 Msa1396940:CDS
AATGCAGCCTATTACAATTA+TGG 0.286210 tig0022089:-79258 None:intergenic
AGAGCAAAAGTTACAAATTC+AGG 0.286726 tig0022089:+79672 Msa1396940:CDS
AAAACCATCCTCCATAAAAC+TGG 0.303767 tig0022089:-78798 None:intergenic
AATTCAATGATCTTAATAAA+AGG 0.306147 tig0022089:+79074 Msa1396940:CDS
CTCGTATCAGCGTGGACAAA+TGG 0.372153 tig0022089:+79558 Msa1396940:CDS
CAGATTATGGTAAGGGAGAA+AGG 0.389421 tig0022089:+78744 Msa1396940:CDS
TTTGGTAGCTTTGATTTACC+TGG 0.427242 tig0022089:+78566 Msa1396940:CDS
GGTGTTGGTGGTAATTCTTT+TGG 0.433044 tig0022089:+78548 Msa1396940:CDS
TGCATTGAAGATTGCAATGC+AGG 0.434565 tig0022089:-79292 None:intergenic
TATCATGATCATCCCTATTA+CGG 0.439036 tig0022089:-79324 None:intergenic
AGATTATGGTAAGGGAGAAA+GGG 0.443869 tig0022089:+78745 Msa1396940:CDS
TCGTATCAGCGTGGACAAAT+GGG 0.448709 tig0022089:+79559 Msa1396940:CDS
GCAGTTAGCTCTCCGTAATA+GGG 0.450748 tig0022089:+79312 Msa1396940:CDS
GGGAACTTCTTGTGAGGTTG+TGG 0.453879 tig0022089:+79126 Msa1396940:CDS
TGTGAAGTGGACTGATAATA+TGG 0.455278 tig0022089:+78877 Msa1396940:CDS
TCTGATGGTGTTGGTGGAAG+TGG 0.459755 tig0022089:+78947 Msa1396940:CDS
ACAAATTCAGGCTGAGAAGT+TGG 0.463771 tig0022089:+79684 Msa1396940:CDS
AATTGTGCTTCCCGTGGTGA+GGG 0.470364 tig0022089:+79433 Msa1396940:CDS
TTTGCTCTTCTAACTGAACT+TGG 0.476208 tig0022089:-79657 None:intergenic
AAAAGCTTAATGATATGTTA+GGG 0.479717 tig0022089:+79101 Msa1396940:CDS
TTCAATGACAGATTATGGTA+AGG 0.481181 tig0022089:+78736 Msa1396940:CDS
CTTCATCATGATCATCAAGC+TGG 0.494557 tig0022089:-79366 None:intergenic
GCAGAGATTTAGCAAGCAAA+AGG 0.497660 tig0022089:+79732 Msa1396940:CDS
CAAGCAAAAGGACCGGGAGT+TGG 0.497817 tig0022089:+79744 Msa1396940:CDS
CGCCTTGGCAGCGTGTGAAG+TGG 0.500864 tig0022089:+78864 Msa1396940:CDS
TCACAAGGAGGAATGATTCA+AGG 0.506693 tig0022089:+78524 Msa1396940:CDS
TTATCTTTCCGAGAAAGAAA+AGG 0.509656 tig0022089:+79177 Msa1396940:CDS
GGCTTTAGAACTGAAGCAAA+AGG 0.514387 tig0022089:+79816 Msa1396940:CDS
GATGGCTTTCCACTCACAAT+GGG 0.519217 tig0022089:+78686 Msa1396940:CDS
AAAAGGGATCGTCGTCGCCT+TGG 0.519575 tig0022089:+78849 Msa1396940:CDS
AGGGTTGTCGCTACATTCAT+CGG 0.521754 tig0022089:+78658 Msa1396940:CDS
TCAATGACAGATTATGGTAA+GGG 0.522539 tig0022089:+78737 Msa1396940:CDS
GAAGCTTGAAAATGAACGTA+TGG 0.528051 tig0022089:+79795 Msa1396940:CDS
CAGCATGGTTACAGAAGCAA+TGG 0.529621 tig0022089:+79623 Msa1396940:CDS
CTTAATGATATGTTAGGGAG+GGG 0.532863 tig0022089:+79106 Msa1396940:CDS
GATTTAGCAAGCAAAAGGAC+CGG 0.534224 tig0022089:+79737 Msa1396940:CDS
ATTTAACCGCCCCTCACCAC+GGG 0.535675 tig0022089:-79443 None:intergenic
GGACAAATGGGGCAGTCTGA+TGG 0.540710 tig0022089:+79571 Msa1396940:CDS
AAGTGGAAGAAGGAAATTTG+CGG 0.541346 tig0022089:+78964 Msa1396940:CDS
TTTAAAAGCATCGTGTTCAT+CGG 0.543314 tig0022089:-79407 None:intergenic
AATGAGTCTCGGCTTTAACT+AGG 0.543954 tig0022089:+79840 Msa1396940:CDS
GACTCAGCTTCTCCAACTCC+CGG 0.544178 tig0022089:-79756 None:intergenic
TAAATTCCATCTAAAAGCGC+AGG 0.553826 tig0022089:-79154 None:intergenic
GCTTAATGATATGTTAGGGA+GGG 0.553961 tig0022089:+79105 Msa1396940:CDS
AGAACTTCTGATGGTGTTGG+TGG 0.554130 tig0022089:+78941 Msa1396940:CDS
GGAATGATTCAAGGTGGTGT+TGG 0.555541 tig0022089:+78533 Msa1396940:CDS
ATTAGCTTGATGTTGGTGAA+TGG 0.556372 tig0022089:-78627 None:intergenic
GACGCGGATTAGCTTGATGT+TGG 0.561054 tig0022089:-78634 None:intergenic
CAATTGTGCTTCCCGTGGTG+AGG 0.561935 tig0022089:+79432 Msa1396940:CDS
TTCATCATGATCATCAAGCT+GGG 0.564029 tig0022089:-79365 None:intergenic
CATCAAGCTAATCCGCGTCA+AGG 0.564490 tig0022089:+78638 Msa1396940:CDS
ATGATTCAAGGTGGTGTTGG+TGG 0.565750 tig0022089:+78536 Msa1396940:CDS
AGCTTAATGATATGTTAGGG+AGG 0.573431 tig0022089:+79104 Msa1396940:CDS
ATCAAGCTAATCCGCGTCAA+GGG 0.574042 tig0022089:+78639 Msa1396940:CDS
AGGGAGGGGAACTTCTTGTG+AGG 0.575992 tig0022089:+79120 Msa1396940:CDS
AAGCAAAAGGAAATGAGTCT+CGG 0.578972 tig0022089:+79829 Msa1396940:CDS
TGTCAAGATTATTTCAACAA+AGG 0.579146 tig0022089:+79535 Msa1396940:CDS
CTCTGATCACAGCTCTGCAA+AGG 0.583764 tig0022089:-78710 None:intergenic
ATTTAGCAAGCAAAAGGACC+GGG 0.584138 tig0022089:+79738 Msa1396940:CDS
GTGCTTCCCGTGGTGAGGGG+CGG 0.584219 tig0022089:+79437 Msa1396940:CDS
GTCCACTTCACACGCTGCCA+AGG 0.587195 tig0022089:-78866 None:intergenic
CTACATTCATCGGTGCAAGA+TGG 0.587584 tig0022089:+78668 Msa1396940:CDS
GTGTTGGTGGAAGTGGAAGA+AGG 0.588046 tig0022089:+78954 Msa1396940:CDS
AGATGGCTTTCCACTCACAA+TGG 0.589107 tig0022089:+78685 Msa1396940:CDS
TGATGTTGGTGAATGGTATG+AGG 0.591910 tig0022089:-78620 None:intergenic
TGATGAACCTGAATTGATCC+AGG 0.599004 tig0022089:-78584 None:intergenic
ATTGTGCTTCCCGTGGTGAG+GGG 0.600048 tig0022089:+79434 Msa1396940:CDS
GGTCAACAGGAAGGGAGTAG+AGG 0.601547 tig0022089:+78824 Msa1396940:CDS
TAGAGAAACAAAGATTCAAG+TGG 0.601786 tig0022089:+79710 Msa1396940:CDS
AAAGACAATTGTGCTTCCCG+TGG 0.602217 tig0022089:+79427 Msa1396940:CDS
TGCAAAGGTCCCATTGTGAG+TGG 0.608379 tig0022089:-78695 None:intergenic
GATTATGGTAAGGGAGAAAG+GGG 0.609744 tig0022089:+78746 Msa1396940:CDS
AGCTGTTTCTTATATCGGTG+AGG 0.609938 tig0022089:+78916 Msa1396940:CDS
CATTTAACCGCCCCTCACCA+CGG 0.615478 tig0022089:-79444 None:intergenic
AAACCATCCTCCATAAAACT+GGG 0.618785 tig0022089:-78797 None:intergenic
CGTATCAGCGTGGACAAATG+GGG 0.619035 tig0022089:+79560 Msa1396940:CDS
GTTGGTGAATGGTATGAGGA+TGG 0.620557 tig0022089:-78616 None:intergenic
GATTGCAATGCAGGATCATG+TGG 0.628342 tig0022089:-79283 None:intergenic
GGTGAGGATAGAACTTCTGA+TGG 0.630725 tig0022089:+78932 Msa1396940:CDS
AGCATGGTTACAGAAGCAAT+GGG 0.632029 tig0022089:+79624 Msa1396940:CDS
TCGAAAGTCATGGCTGAAAG+AGG 0.632554 tig0022089:+79019 Msa1396940:CDS
GATAGAACTTCTGATGGTGT+TGG 0.639977 tig0022089:+78938 Msa1396940:CDS
AAGAAATTGAAACAAAACCA+AGG 0.641410 tig0022089:+79475 Msa1396940:CDS
TGTTTCGCCGCAGCAATGTG+AGG 0.648167 tig0022089:+79048 Msa1396940:CDS
AATTTATCCTCACATTGCTG+CGG 0.655462 tig0022089:-79055 None:intergenic
CTGAAAACATGAGAGCAGCA+TGG 0.667038 tig0022089:+79608 Msa1396940:CDS
ATGGATGTGAATTTGTCACA+AGG 0.679998 tig0022089:+78509 Msa1396940:CDS
AACAAAGGCTCGTATCAGCG+TGG 0.694218 tig0022089:+79550 Msa1396940:CDS
TGTAGCGACAACCCTTGACG+CGG 0.703142 tig0022089:-78650 None:intergenic
GATGTGAATTTGTCACAAGG+AGG 0.706028 tig0022089:+78512 Msa1396940:CDS
ATTATGGTAAGGGAGAAAGG+GGG 0.719074 tig0022089:+78747 Msa1396940:CDS
GAGATGTGTGTCGAAAGTCA+TGG 0.729050 tig0022089:+79009 Msa1396940:CDS
CAAGGAGGAATGATTCAAGG+TGG 0.742066 tig0022089:+78527 Msa1396940:CDS
AGTGGACTGATAATATGGTG+AGG 0.762323 tig0022089:+78882 Msa1396940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAATGATCTTAATAAA+AGG + tig0022089:79074-79093 Msa1396940:CDS 15.0%
!! AATTCAATGATCTTAATAAA+AGG + tig0022089:79074-79093 Msa1396940:CDS 15.0%
!! AAAAAGCTTAATGATATGTT+AGG + tig0022089:79100-79119 Msa1396940:CDS 20.0%
!! AAAAGCTTAATGATATGTTA+GGG + tig0022089:79101-79120 Msa1396940:CDS 20.0%
!! AAAAAGCTTAATGATATGTT+AGG + tig0022089:79100-79119 Msa1396940:CDS 20.0%
!! AAAAGCTTAATGATATGTTA+GGG + tig0022089:79101-79120 Msa1396940:CDS 20.0%
! AGTATTTCAATGACAGATTA+TGG + tig0022089:78731-78750 Msa1396940:CDS 25.0%
!!! ATTACAGCTGTTTCTTATAT+CGG + tig0022089:78911-78930 Msa1396940:CDS 25.0%
! GTTCTTACCATAATTGTAAT+AGG + tig0022089:79251-79270 Msa1396940:CDS 25.0%
! AAGAAATTGAAACAAAACCA+AGG + tig0022089:79475-79494 Msa1396940:CDS 25.0%
!!! CAAAAGTATTAGCATGATTT+TGG - tig0022089:79501-79520 None:intergenic 25.0%
!! CAAAATCATGCTAATACTTT+TGG + tig0022089:79499-79518 Msa1396940:CDS 25.0%
! TGTCAAGATTATTTCAACAA+AGG + tig0022089:79535-79554 Msa1396940:CDS 25.0%
! AGTATTTCAATGACAGATTA+TGG + tig0022089:78731-78750 Msa1396940:CDS 25.0%
!!! ATTACAGCTGTTTCTTATAT+CGG + tig0022089:78911-78930 Msa1396940:CDS 25.0%
! GTTCTTACCATAATTGTAAT+AGG + tig0022089:79251-79270 Msa1396940:CDS 25.0%
! AAGAAATTGAAACAAAACCA+AGG + tig0022089:79475-79494 Msa1396940:CDS 25.0%
!!! CAAAAGTATTAGCATGATTT+TGG - tig0022089:79501-79520 None:intergenic 25.0%
!! CAAAATCATGCTAATACTTT+TGG + tig0022089:79499-79518 Msa1396940:CDS 25.0%
! TGTCAAGATTATTTCAACAA+AGG + tig0022089:79535-79554 Msa1396940:CDS 25.0%
TTCAATGACAGATTATGGTA+AGG + tig0022089:78736-78755 Msa1396940:CDS 30.0%
TCAATGACAGATTATGGTAA+GGG + tig0022089:78737-78756 Msa1396940:CDS 30.0%
TTATCTTTCCGAGAAAGAAA+AGG + tig0022089:79177-79196 Msa1396940:CDS 30.0%
AATGCAGCCTATTACAATTA+TGG - tig0022089:79261-79280 None:intergenic 30.0%
TATCATGATCATCCCTATTA+CGG - tig0022089:79327-79346 None:intergenic 30.0%
!! TTTAAAAGCATCGTGTTCAT+CGG - tig0022089:79410-79429 None:intergenic 30.0%
AGAGCAAAAGTTACAAATTC+AGG + tig0022089:79672-79691 Msa1396940:CDS 30.0%
TAGAGAAACAAAGATTCAAG+TGG + tig0022089:79710-79729 Msa1396940:CDS 30.0%
TTCAATGACAGATTATGGTA+AGG + tig0022089:78736-78755 Msa1396940:CDS 30.0%
TCAATGACAGATTATGGTAA+GGG + tig0022089:78737-78756 Msa1396940:CDS 30.0%
TTATCTTTCCGAGAAAGAAA+AGG + tig0022089:79177-79196 Msa1396940:CDS 30.0%
AATGCAGCCTATTACAATTA+TGG - tig0022089:79261-79280 None:intergenic 30.0%
TATCATGATCATCCCTATTA+CGG - tig0022089:79327-79346 None:intergenic 30.0%
!! TTTAAAAGCATCGTGTTCAT+CGG - tig0022089:79410-79429 None:intergenic 30.0%
AGAGCAAAAGTTACAAATTC+AGG + tig0022089:79672-79691 Msa1396940:CDS 30.0%
TAGAGAAACAAAGATTCAAG+TGG + tig0022089:79710-79729 Msa1396940:CDS 30.0%
ATGGATGTGAATTTGTCACA+AGG + tig0022089:78509-78528 Msa1396940:CDS 35.0%
!! TTTGGTAGCTTTGATTTACC+TGG + tig0022089:78566-78585 Msa1396940:CDS 35.0%
TGATTTACCTGGATCAATTC+AGG + tig0022089:78577-78596 Msa1396940:CDS 35.0%
! ATTAGCTTGATGTTGGTGAA+TGG - tig0022089:78630-78649 None:intergenic 35.0%
AGATTATGGTAAGGGAGAAA+GGG + tig0022089:78745-78764 Msa1396940:CDS 35.0%
AAACCATCCTCCATAAAACT+GGG - tig0022089:78800-78819 None:intergenic 35.0%
AAAACCATCCTCCATAAAAC+TGG - tig0022089:78801-78820 None:intergenic 35.0%
!!! TTTATGGAGGATGGTTTTGA+TGG + tig0022089:78803-78822 Msa1396940:CDS 35.0%
!! TGTGAAGTGGACTGATAATA+TGG + tig0022089:78877-78896 Msa1396940:CDS 35.0%
AAGTGGAAGAAGGAAATTTG+CGG + tig0022089:78964-78983 Msa1396940:CDS 35.0%
AATTTATCCTCACATTGCTG+CGG - tig0022089:79058-79077 None:intergenic 35.0%
AGCTTAATGATATGTTAGGG+AGG + tig0022089:79104-79123 Msa1396940:CDS 35.0%
GCTTAATGATATGTTAGGGA+GGG + tig0022089:79105-79124 Msa1396940:CDS 35.0%
CTTAATGATATGTTAGGGAG+GGG + tig0022089:79106-79125 Msa1396940:CDS 35.0%
! TAAATTCCATCTAAAAGCGC+AGG - tig0022089:79157-79176 None:intergenic 35.0%
! AACTTCGTCCTTTTCTTTCT+CGG - tig0022089:79188-79207 None:intergenic 35.0%
TTCATCATGATCATCAAGCT+GGG - tig0022089:79368-79387 None:intergenic 35.0%
!! TATTAGCATGATTTTGGCCT+TGG - tig0022089:79495-79514 None:intergenic 35.0%
TTTGCTCTTCTAACTGAACT+TGG - tig0022089:79660-79679 None:intergenic 35.0%
GAAGCTTGAAAATGAACGTA+TGG + tig0022089:79795-79814 Msa1396940:CDS 35.0%
AAGCAAAAGGAAATGAGTCT+CGG + tig0022089:79829-79848 Msa1396940:CDS 35.0%
ATGGATGTGAATTTGTCACA+AGG + tig0022089:78509-78528 Msa1396940:CDS 35.0%
!! TTTGGTAGCTTTGATTTACC+TGG + tig0022089:78566-78585 Msa1396940:CDS 35.0%
TGATTTACCTGGATCAATTC+AGG + tig0022089:78577-78596 Msa1396940:CDS 35.0%
! ATTAGCTTGATGTTGGTGAA+TGG - tig0022089:78630-78649 None:intergenic 35.0%
AGATTATGGTAAGGGAGAAA+GGG + tig0022089:78745-78764 Msa1396940:CDS 35.0%
AAACCATCCTCCATAAAACT+GGG - tig0022089:78800-78819 None:intergenic 35.0%
AAAACCATCCTCCATAAAAC+TGG - tig0022089:78801-78820 None:intergenic 35.0%
!!! TTTATGGAGGATGGTTTTGA+TGG + tig0022089:78803-78822 Msa1396940:CDS 35.0%
!! TGTGAAGTGGACTGATAATA+TGG + tig0022089:78877-78896 Msa1396940:CDS 35.0%
AAGTGGAAGAAGGAAATTTG+CGG + tig0022089:78964-78983 Msa1396940:CDS 35.0%
AATTTATCCTCACATTGCTG+CGG - tig0022089:79058-79077 None:intergenic 35.0%
AGCTTAATGATATGTTAGGG+AGG + tig0022089:79104-79123 Msa1396940:CDS 35.0%
GCTTAATGATATGTTAGGGA+GGG + tig0022089:79105-79124 Msa1396940:CDS 35.0%
CTTAATGATATGTTAGGGAG+GGG + tig0022089:79106-79125 Msa1396940:CDS 35.0%
! TAAATTCCATCTAAAAGCGC+AGG - tig0022089:79157-79176 None:intergenic 35.0%
! AACTTCGTCCTTTTCTTTCT+CGG - tig0022089:79188-79207 None:intergenic 35.0%
TTCATCATGATCATCAAGCT+GGG - tig0022089:79368-79387 None:intergenic 35.0%
!! TATTAGCATGATTTTGGCCT+TGG - tig0022089:79495-79514 None:intergenic 35.0%
TTTGCTCTTCTAACTGAACT+TGG - tig0022089:79660-79679 None:intergenic 35.0%
GAAGCTTGAAAATGAACGTA+TGG + tig0022089:79795-79814 Msa1396940:CDS 35.0%
AAGCAAAAGGAAATGAGTCT+CGG + tig0022089:79829-79848 Msa1396940:CDS 35.0%
GATGTGAATTTGTCACAAGG+AGG + tig0022089:78512-78531 Msa1396940:CDS 40.0%
TCACAAGGAGGAATGATTCA+AGG + tig0022089:78524-78543 Msa1396940:CDS 40.0%
!!! GGTGTTGGTGGTAATTCTTT+TGG + tig0022089:78548-78567 Msa1396940:CDS 40.0%
TGATGAACCTGAATTGATCC+AGG - tig0022089:78587-78606 None:intergenic 40.0%
! TGATGTTGGTGAATGGTATG+AGG - tig0022089:78623-78642 None:intergenic 40.0%
CAGATTATGGTAAGGGAGAA+AGG + tig0022089:78744-78763 Msa1396940:CDS 40.0%
GATTATGGTAAGGGAGAAAG+GGG + tig0022089:78746-78765 Msa1396940:CDS 40.0%
ATTATGGTAAGGGAGAAAGG+GGG + tig0022089:78747-78766 Msa1396940:CDS 40.0%
GGGGAAAAATTGTACAAGTG+AGG + tig0022089:78766-78785 Msa1396940:CDS 40.0%
!! GTTTTGATGGTCAACAGGAA+GGG + tig0022089:78816-78835 Msa1396940:CDS 40.0%
GAAGGGAGTAGAGGTAAAAA+GGG + tig0022089:78833-78852 Msa1396940:CDS 40.0%
!! AGTGGACTGATAATATGGTG+AGG + tig0022089:78882-78901 Msa1396940:CDS 40.0%
!! AGCTGTTTCTTATATCGGTG+AGG + tig0022089:78916-78935 Msa1396940:CDS 40.0%
! GATAGAACTTCTGATGGTGT+TGG + tig0022089:78938-78957 Msa1396940:CDS 40.0%
! ATTTGCGGTTTTGCAGAAGA+AGG + tig0022089:78979-78998 Msa1396940:CDS 40.0%
! TTTGCGGTTTTGCAGAAGAA+GGG + tig0022089:78980-78999 Msa1396940:CDS 40.0%
! TTTTGCAGAAGAAGGGTAAG+TGG + tig0022089:78987-79006 Msa1396940:CDS 40.0%
! GAAAATCCTGCGCTTTTAGA+TGG + tig0022089:79148-79167 Msa1396940:CDS 40.0%
TGCATTGAAGATTGCAATGC+AGG - tig0022089:79295-79314 None:intergenic 40.0%
CTTCATCATGATCATCAAGC+TGG - tig0022089:79369-79388 None:intergenic 40.0%
AGCATGGTTACAGAAGCAAT+GGG + tig0022089:79624-79643 Msa1396940:CDS 40.0%
ACAAATTCAGGCTGAGAAGT+TGG + tig0022089:79684-79703 Msa1396940:CDS 40.0%
GCAGAGATTTAGCAAGCAAA+AGG + tig0022089:79732-79751 Msa1396940:CDS 40.0%
GATTTAGCAAGCAAAAGGAC+CGG + tig0022089:79737-79756 Msa1396940:CDS 40.0%
ATTTAGCAAGCAAAAGGACC+GGG + tig0022089:79738-79757 Msa1396940:CDS 40.0%
!! GGCTTTAGAACTGAAGCAAA+AGG + tig0022089:79816-79835 Msa1396940:CDS 40.0%
GATGTGAATTTGTCACAAGG+AGG + tig0022089:78512-78531 Msa1396940:CDS 40.0%
TCACAAGGAGGAATGATTCA+AGG + tig0022089:78524-78543 Msa1396940:CDS 40.0%
!!! GGTGTTGGTGGTAATTCTTT+TGG + tig0022089:78548-78567 Msa1396940:CDS 40.0%
TGATGAACCTGAATTGATCC+AGG - tig0022089:78587-78606 None:intergenic 40.0%
! TGATGTTGGTGAATGGTATG+AGG - tig0022089:78623-78642 None:intergenic 40.0%
CAGATTATGGTAAGGGAGAA+AGG + tig0022089:78744-78763 Msa1396940:CDS 40.0%
GATTATGGTAAGGGAGAAAG+GGG + tig0022089:78746-78765 Msa1396940:CDS 40.0%
ATTATGGTAAGGGAGAAAGG+GGG + tig0022089:78747-78766 Msa1396940:CDS 40.0%
GGGGAAAAATTGTACAAGTG+AGG + tig0022089:78766-78785 Msa1396940:CDS 40.0%
!! GTTTTGATGGTCAACAGGAA+GGG + tig0022089:78816-78835 Msa1396940:CDS 40.0%
GAAGGGAGTAGAGGTAAAAA+GGG + tig0022089:78833-78852 Msa1396940:CDS 40.0%
!! AGTGGACTGATAATATGGTG+AGG + tig0022089:78882-78901 Msa1396940:CDS 40.0%
!! AGCTGTTTCTTATATCGGTG+AGG + tig0022089:78916-78935 Msa1396940:CDS 40.0%
! GATAGAACTTCTGATGGTGT+TGG + tig0022089:78938-78957 Msa1396940:CDS 40.0%
! ATTTGCGGTTTTGCAGAAGA+AGG + tig0022089:78979-78998 Msa1396940:CDS 40.0%
! TTTGCGGTTTTGCAGAAGAA+GGG + tig0022089:78980-78999 Msa1396940:CDS 40.0%
! TTTTGCAGAAGAAGGGTAAG+TGG + tig0022089:78987-79006 Msa1396940:CDS 40.0%
! GAAAATCCTGCGCTTTTAGA+TGG + tig0022089:79148-79167 Msa1396940:CDS 40.0%
TGCATTGAAGATTGCAATGC+AGG - tig0022089:79295-79314 None:intergenic 40.0%
CTTCATCATGATCATCAAGC+TGG - tig0022089:79369-79388 None:intergenic 40.0%
AGCATGGTTACAGAAGCAAT+GGG + tig0022089:79624-79643 Msa1396940:CDS 40.0%
ACAAATTCAGGCTGAGAAGT+TGG + tig0022089:79684-79703 Msa1396940:CDS 40.0%
GCAGAGATTTAGCAAGCAAA+AGG + tig0022089:79732-79751 Msa1396940:CDS 40.0%
GATTTAGCAAGCAAAAGGAC+CGG + tig0022089:79737-79756 Msa1396940:CDS 40.0%
ATTTAGCAAGCAAAAGGACC+GGG + tig0022089:79738-79757 Msa1396940:CDS 40.0%
!! GGCTTTAGAACTGAAGCAAA+AGG + tig0022089:79816-79835 Msa1396940:CDS 40.0%
CAAGGAGGAATGATTCAAGG+TGG + tig0022089:78527-78546 Msa1396940:CDS 45.0%
GGAATGATTCAAGGTGGTGT+TGG + tig0022089:78533-78552 Msa1396940:CDS 45.0%
! ATGATTCAAGGTGGTGTTGG+TGG + tig0022089:78536-78555 Msa1396940:CDS 45.0%
! GTTGGTGAATGGTATGAGGA+TGG - tig0022089:78619-78638 None:intergenic 45.0%
ATCAAGCTAATCCGCGTCAA+GGG + tig0022089:78639-78658 Msa1396940:CDS 45.0%
AGGGTTGTCGCTACATTCAT+CGG + tig0022089:78658-78677 Msa1396940:CDS 45.0%
CTACATTCATCGGTGCAAGA+TGG + tig0022089:78668-78687 Msa1396940:CDS 45.0%
AGATGGCTTTCCACTCACAA+TGG + tig0022089:78685-78704 Msa1396940:CDS 45.0%
GATGGCTTTCCACTCACAAT+GGG + tig0022089:78686-78705 Msa1396940:CDS 45.0%
! GGAAGACGATCCCAGTTTTA+TGG + tig0022089:78787-78806 Msa1396940:CDS 45.0%
!! AGACGATCCCAGTTTTATGG+AGG + tig0022089:78790-78809 Msa1396940:CDS 45.0%
!! GATCCCAGTTTTATGGAGGA+TGG + tig0022089:78794-78813 Msa1396940:CDS 45.0%
!!! GGATGGTTTTGATGGTCAAC+AGG + tig0022089:78811-78830 Msa1396940:CDS 45.0%
!! GGTTTTGATGGTCAACAGGA+AGG + tig0022089:78815-78834 Msa1396940:CDS 45.0%
GGAAGGGAGTAGAGGTAAAA+AGG + tig0022089:78832-78851 Msa1396940:CDS 45.0%
GGTGAGGATAGAACTTCTGA+TGG + tig0022089:78932-78951 Msa1396940:CDS 45.0%
! AGAACTTCTGATGGTGTTGG+TGG + tig0022089:78941-78960 Msa1396940:CDS 45.0%
GAGATGTGTGTCGAAAGTCA+TGG + tig0022089:79009-79028 Msa1396940:CDS 45.0%
TCGAAAGTCATGGCTGAAAG+AGG + tig0022089:79019-79038 Msa1396940:CDS 45.0%
GATTGCAATGCAGGATCATG+TGG - tig0022089:79286-79305 None:intergenic 45.0%
! TGCAGTTAGCTCTCCGTAAT+AGG + tig0022089:79311-79330 Msa1396940:CDS 45.0%
! GCAGTTAGCTCTCCGTAATA+GGG + tig0022089:79312-79331 Msa1396940:CDS 45.0%
AAAGACAATTGTGCTTCCCG+TGG + tig0022089:79427-79446 Msa1396940:CDS 45.0%
TCGTATCAGCGTGGACAAAT+GGG + tig0022089:79559-79578 Msa1396940:CDS 45.0%
! CATGCTGCTCTCATGTTTTC+AGG - tig0022089:79610-79629 None:intergenic 45.0%
CTGAAAACATGAGAGCAGCA+TGG + tig0022089:79608-79627 Msa1396940:CDS 45.0%
CAGCATGGTTACAGAAGCAA+TGG + tig0022089:79623-79642 Msa1396940:CDS 45.0%
CAAGGAGGAATGATTCAAGG+TGG + tig0022089:78527-78546 Msa1396940:CDS 45.0%
GGAATGATTCAAGGTGGTGT+TGG + tig0022089:78533-78552 Msa1396940:CDS 45.0%
! ATGATTCAAGGTGGTGTTGG+TGG + tig0022089:78536-78555 Msa1396940:CDS 45.0%
! GTTGGTGAATGGTATGAGGA+TGG - tig0022089:78619-78638 None:intergenic 45.0%
ATCAAGCTAATCCGCGTCAA+GGG + tig0022089:78639-78658 Msa1396940:CDS 45.0%
AGGGTTGTCGCTACATTCAT+CGG + tig0022089:78658-78677 Msa1396940:CDS 45.0%
CTACATTCATCGGTGCAAGA+TGG + tig0022089:78668-78687 Msa1396940:CDS 45.0%
AGATGGCTTTCCACTCACAA+TGG + tig0022089:78685-78704 Msa1396940:CDS 45.0%
GATGGCTTTCCACTCACAAT+GGG + tig0022089:78686-78705 Msa1396940:CDS 45.0%
! GGAAGACGATCCCAGTTTTA+TGG + tig0022089:78787-78806 Msa1396940:CDS 45.0%
!! AGACGATCCCAGTTTTATGG+AGG + tig0022089:78790-78809 Msa1396940:CDS 45.0%
!! GATCCCAGTTTTATGGAGGA+TGG + tig0022089:78794-78813 Msa1396940:CDS 45.0%
!!! GGATGGTTTTGATGGTCAAC+AGG + tig0022089:78811-78830 Msa1396940:CDS 45.0%
!! GGTTTTGATGGTCAACAGGA+AGG + tig0022089:78815-78834 Msa1396940:CDS 45.0%
GGAAGGGAGTAGAGGTAAAA+AGG + tig0022089:78832-78851 Msa1396940:CDS 45.0%
GGTGAGGATAGAACTTCTGA+TGG + tig0022089:78932-78951 Msa1396940:CDS 45.0%
! AGAACTTCTGATGGTGTTGG+TGG + tig0022089:78941-78960 Msa1396940:CDS 45.0%
GAGATGTGTGTCGAAAGTCA+TGG + tig0022089:79009-79028 Msa1396940:CDS 45.0%
TCGAAAGTCATGGCTGAAAG+AGG + tig0022089:79019-79038 Msa1396940:CDS 45.0%
GATTGCAATGCAGGATCATG+TGG - tig0022089:79286-79305 None:intergenic 45.0%
! TGCAGTTAGCTCTCCGTAAT+AGG + tig0022089:79311-79330 Msa1396940:CDS 45.0%
! GCAGTTAGCTCTCCGTAATA+GGG + tig0022089:79312-79331 Msa1396940:CDS 45.0%
AAAGACAATTGTGCTTCCCG+TGG + tig0022089:79427-79446 Msa1396940:CDS 45.0%
TCGTATCAGCGTGGACAAAT+GGG + tig0022089:79559-79578 Msa1396940:CDS 45.0%
! CATGCTGCTCTCATGTTTTC+AGG - tig0022089:79610-79629 None:intergenic 45.0%
CTGAAAACATGAGAGCAGCA+TGG + tig0022089:79608-79627 Msa1396940:CDS 45.0%
CAGCATGGTTACAGAAGCAA+TGG + tig0022089:79623-79642 Msa1396940:CDS 45.0%
!! GACGCGGATTAGCTTGATGT+TGG - tig0022089:78637-78656 None:intergenic 50.0%
CATCAAGCTAATCCGCGTCA+AGG + tig0022089:78638-78657 Msa1396940:CDS 50.0%
TGCAAAGGTCCCATTGTGAG+TGG - tig0022089:78698-78717 None:intergenic 50.0%
CTCTGATCACAGCTCTGCAA+AGG - tig0022089:78713-78732 None:intergenic 50.0%
!! TCTGATGGTGTTGGTGGAAG+TGG + tig0022089:78947-78966 Msa1396940:CDS 50.0%
! GTGTTGGTGGAAGTGGAAGA+AGG + tig0022089:78954-78973 Msa1396940:CDS 50.0%
GGGAACTTCTTGTGAGGTTG+TGG + tig0022089:79126-79145 Msa1396940:CDS 50.0%
AATTGTGCTTCCCGTGGTGA+GGG + tig0022089:79433-79452 Msa1396940:CDS 50.0%
AACAAAGGCTCGTATCAGCG+TGG + tig0022089:79550-79569 Msa1396940:CDS 50.0%
CTCGTATCAGCGTGGACAAA+TGG + tig0022089:79558-79577 Msa1396940:CDS 50.0%
CGTATCAGCGTGGACAAATG+GGG + tig0022089:79560-79579 Msa1396940:CDS 50.0%
!! GACGCGGATTAGCTTGATGT+TGG - tig0022089:78637-78656 None:intergenic 50.0%
CATCAAGCTAATCCGCGTCA+AGG + tig0022089:78638-78657 Msa1396940:CDS 50.0%
TGCAAAGGTCCCATTGTGAG+TGG - tig0022089:78698-78717 None:intergenic 50.0%
CTCTGATCACAGCTCTGCAA+AGG - tig0022089:78713-78732 None:intergenic 50.0%
!! TCTGATGGTGTTGGTGGAAG+TGG + tig0022089:78947-78966 Msa1396940:CDS 50.0%
! GTGTTGGTGGAAGTGGAAGA+AGG + tig0022089:78954-78973 Msa1396940:CDS 50.0%
GGGAACTTCTTGTGAGGTTG+TGG + tig0022089:79126-79145 Msa1396940:CDS 50.0%
AATTGTGCTTCCCGTGGTGA+GGG + tig0022089:79433-79452 Msa1396940:CDS 50.0%
AACAAAGGCTCGTATCAGCG+TGG + tig0022089:79550-79569 Msa1396940:CDS 50.0%
CTCGTATCAGCGTGGACAAA+TGG + tig0022089:79558-79577 Msa1396940:CDS 50.0%
CGTATCAGCGTGGACAAATG+GGG + tig0022089:79560-79579 Msa1396940:CDS 50.0%
TGTAGCGACAACCCTTGACG+CGG - tig0022089:78653-78672 None:intergenic 55.0%
GGTCAACAGGAAGGGAGTAG+AGG + tig0022089:78824-78843 Msa1396940:CDS 55.0%
AAAAGGGATCGTCGTCGCCT+TGG + tig0022089:78849-78868 Msa1396940:CDS 55.0%
TGTTTCGCCGCAGCAATGTG+AGG + tig0022089:79048-79067 Msa1396940:CDS 55.0%
AGGGAGGGGAACTTCTTGTG+AGG + tig0022089:79120-79139 Msa1396940:CDS 55.0%
CAATTGTGCTTCCCGTGGTG+AGG + tig0022089:79432-79451 Msa1396940:CDS 55.0%
ATTGTGCTTCCCGTGGTGAG+GGG + tig0022089:79434-79453 Msa1396940:CDS 55.0%
ATTTAACCGCCCCTCACCAC+GGG - tig0022089:79446-79465 None:intergenic 55.0%
CATTTAACCGCCCCTCACCA+CGG - tig0022089:79447-79466 None:intergenic 55.0%
GGACAAATGGGGCAGTCTGA+TGG + tig0022089:79571-79590 Msa1396940:CDS 55.0%
CAAGCAAAAGGACCGGGAGT+TGG + tig0022089:79744-79763 Msa1396940:CDS 55.0%
GACTCAGCTTCTCCAACTCC+CGG - tig0022089:79759-79778 None:intergenic 55.0%
TGTAGCGACAACCCTTGACG+CGG - tig0022089:78653-78672 None:intergenic 55.0%
GGTCAACAGGAAGGGAGTAG+AGG + tig0022089:78824-78843 Msa1396940:CDS 55.0%
AAAAGGGATCGTCGTCGCCT+TGG + tig0022089:78849-78868 Msa1396940:CDS 55.0%
TGTTTCGCCGCAGCAATGTG+AGG + tig0022089:79048-79067 Msa1396940:CDS 55.0%
AGGGAGGGGAACTTCTTGTG+AGG + tig0022089:79120-79139 Msa1396940:CDS 55.0%
CAATTGTGCTTCCCGTGGTG+AGG + tig0022089:79432-79451 Msa1396940:CDS 55.0%
ATTGTGCTTCCCGTGGTGAG+GGG + tig0022089:79434-79453 Msa1396940:CDS 55.0%
ATTTAACCGCCCCTCACCAC+GGG - tig0022089:79446-79465 None:intergenic 55.0%
CATTTAACCGCCCCTCACCA+CGG - tig0022089:79447-79466 None:intergenic 55.0%
GGACAAATGGGGCAGTCTGA+TGG + tig0022089:79571-79590 Msa1396940:CDS 55.0%
CAAGCAAAAGGACCGGGAGT+TGG + tig0022089:79744-79763 Msa1396940:CDS 55.0%
GACTCAGCTTCTCCAACTCC+CGG - tig0022089:79759-79778 None:intergenic 55.0%
GTCCACTTCACACGCTGCCA+AGG - tig0022089:78869-78888 None:intergenic 60.0%
CGTGGTGAGGGGCGGTTAAA+TGG + tig0022089:79445-79464 Msa1396940:CDS 60.0%
GTCCACTTCACACGCTGCCA+AGG - tig0022089:78869-78888 None:intergenic 60.0%
CGTGGTGAGGGGCGGTTAAA+TGG + tig0022089:79445-79464 Msa1396940:CDS 60.0%
CGCCTTGGCAGCGTGTGAAG+TGG + tig0022089:78864-78883 Msa1396940:CDS 65.0%
CGCCTTGGCAGCGTGTGAAG+TGG + tig0022089:78864-78883 Msa1396940:CDS 65.0%
GTGCTTCCCGTGGTGAGGGG+CGG + tig0022089:79437-79456 Msa1396940:CDS 70.0%
GTGCTTCCCGTGGTGAGGGG+CGG + tig0022089:79437-79456 Msa1396940:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0022089 gene 78509 79861 78509 ID=Msa1396940;Name=Msa1396940
tig0022089 mRNA 78509 79861 78509 ID=Msa1396940-mRNA-1;Parent=Msa1396940;Name=Msa1396940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|450
tig0022089 exon 78509 79861 78509 ID=Msa1396940-mRNA-1:exon:15734;Parent=Msa1396940-mRNA-1
tig0022089 CDS 78509 79861 78509 ID=Msa1396940-mRNA-1:cds;Parent=Msa1396940-mRNA-1
Gene Sequence

>Msa1396940

ATGGATGTGAATTTGTCACAAGGAGGAATGATTCAAGGTGGTGTTGGTGGTAATTCTTTTGGTAGCTTTGATTTACCTGGATCAATTCAGGTTCATCATCAAGCACACCATCCTCATACCATTCACCAACATCAAGCTAATCCGCGTCAAGGGTTGTCGCTACATTCATCGGTGCAAGATGGCTTTCCACTCACAATGGGACCTTTGCAGAGCTGTGATCAGAGTATTTCAATGACAGATTATGGTAAGGGAGAAAGGGGGAAAAATTGTACAAGTGAGGAAGACGATCCCAGTTTTATGGAGGATGGTTTTGATGGTCAACAGGAAGGGAGTAGAGGTAAAAAGGGATCGTCGTCGCCTTGGCAGCGTGTGAAGTGGACTGATAATATGGTGAGGCTTATGATTACAGCTGTTTCTTATATCGGTGAGGATAGAACTTCTGATGGTGTTGGTGGAAGTGGAAGAAGGAAATTTGCGGTTTTGCAGAAGAAGGGTAAGTGGAGATGTGTGTCGAAAGTCATGGCTGAAAGAGGTTGTCATGTTTCGCCGCAGCAATGTGAGGATAAATTCAATGATCTTAATAAAAGGTATAAAAAGCTTAATGATATGTTAGGGAGGGGAACTTCTTGTGAGGTTGTGGAAAATCCTGCGCTTTTAGATGGAATTTATTATCTTTCCGAGAAAGAAAAGGACGAAGTTCGAAAAATATTAAGCTCAAAACAATTGTTCTATGAAGAGATGTGTTCTTACCATAATTGTAATAGGCTGCATTTGCCACATGATCCTGCATTGCAATCTTCAATGCAGTTAGCTCTCCGTAATAGGGATGATCATGATAACGATGATATCAGAAGATCCCAGCTTGATGATCATGATGAAGACGAGCAAGATGCAGAAACCGATGAACACGATGCTTTTAAAGACAATTGTGCTTCCCGTGGTGAGGGGCGGTTAAATGGATCAATGAAGAAATTGAAACAAAACCAAGGCCAAAATCATGCTAATACTTTTGGTAATTCTTTCAACTGTCAAGATTATTTCAACAAAGGCTCGTATCAGCGTGGACAAATGGGGCAGTCTGATGGTAATCAAGTTATACCTGAAAACATGAGAGCAGCATGGTTACAGAAGCAATGGGTTGACTCTCGCCAAGTTCAGTTAGAAGAGCAAAAGTTACAAATTCAGGCTGAGAAGTTGGAATTAGAGAAACAAAGATTCAAGTGGCAGAGATTTAGCAAGCAAAAGGACCGGGAGTTGGAGAAGCTGAGTCTAGAAAACGAAAGAATGAAGCTTGAAAATGAACGTATGGCTTTAGAACTGAAGCAAAAGGAAATGAGTCTCGGCTTTAACTAG

Protein sequence

>Msa1396940

MDVNLSQGGMIQGGVGGNSFGSFDLPGSIQVHHQAHHPHTIHQHQANPRQGLSLHSSVQDGFPLTMGPLQSCDQSISMTDYGKGERGKNCTSEEDDPSFMEDGFDGQQEGSRGKKGSSSPWQRVKWTDNMVRLMITAVSYIGEDRTSDGVGGSGRRKFAVLQKKGKWRCVSKVMAERGCHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCEVVENPALLDGIYYLSEKEKDEVRKILSSKQLFYEEMCSYHNCNRLHLPHDPALQSSMQLALRNRDDHDNDDIRRSQLDDHDEDEQDAETDEHDAFKDNCASRGEGRLNGSMKKLKQNQGQNHANTFGNSFNCQDYFNKGSYQRGQMGQSDGNQVIPENMRAAWLQKQWVDSRQVQLEEQKLQIQAEKLELEKQRFKWQRFSKQKDRELEKLSLENERMKLENERMALELKQKEMSLGFN*