Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058650 | XP_024630962.1 | 94.706 | 170 | 8 | 1 | 65 | 234 | 59 | 227 | 1.06e-112 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058650 | G7I3G4 | 94.706 | 170 | 8 | 1 | 65 | 234 | 59 | 227 | 3.57e-112 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa1058650 | 0.800842 | 1.192270e-48 | -8.615850e-47 |
| Msa0084380 | Msa1058650 | 0.812577 | 3.952275e-51 | -8.615850e-47 |
| Msa0663390 | Msa1058650 | 0.801671 | 8.065858e-49 | -8.615850e-47 |
| Msa0673460 | Msa1058650 | 0.803729 | 3.034205e-49 | -8.615850e-47 |
| Msa0716840 | Msa1058650 | 0.811120 | 8.205448e-51 | -8.615850e-47 |
| Msa0731940 | Msa1058650 | 0.800686 | 1.282620e-48 | -8.615850e-47 |
| Msa0767760 | Msa1058650 | 0.802403 | 5.703365e-49 | -8.615850e-47 |
| Msa0796700 | Msa1058650 | 0.805674 | 1.191016e-49 | -8.615850e-47 |
| Msa0820850 | Msa1058650 | 0.810429 | 1.158080e-50 | -8.615850e-47 |
| Msa0832340 | Msa1058650 | 0.807703 | 4.441299e-50 | -8.615850e-47 |
| Msa0840820 | Msa1058650 | 0.818062 | 2.384706e-52 | -8.615850e-47 |
| Msa0180500 | Msa1058650 | 0.806464 | 8.123303e-50 | -8.615850e-47 |
| Msa1014540 | Msa1058650 | 0.806443 | 8.204761e-50 | -8.615850e-47 |
| Msa1058640 | Msa1058650 | 0.937170 | 5.350779e-98 | -8.615850e-47 |
| Msa1058650 | Msa1058710 | 0.886847 | 2.394780e-72 | -8.615850e-47 |
| Msa1058650 | Msa1075540 | 0.820268 | 7.502594e-53 | -8.615850e-47 |
| Msa1058650 | Msa1075650 | 0.812204 | 4.768258e-51 | -8.615850e-47 |
| Msa1058650 | Msa1113170 | 0.801924 | 7.158383e-49 | -8.615850e-47 |
| Msa1058650 | Msa1233890 | 0.801285 | 9.679590e-49 | -8.615850e-47 |
| Msa1058650 | Msa1287460 | 0.803784 | 2.954299e-49 | -8.615850e-47 |
| Msa1058650 | Msa1306850 | 0.814464 | 1.520552e-51 | -8.615850e-47 |
| Msa1058650 | Msa1306920 | 0.803422 | 3.511929e-49 | -8.615850e-47 |
| Msa1058650 | Msa1466540 | 0.806433 | 8.244614e-50 | -8.615850e-47 |
| Msa0298700 | Msa1058650 | 0.804065 | 2.583119e-49 | -8.615850e-47 |
| Msa0325550 | Msa1058650 | 0.808053 | 3.741497e-50 | -8.615850e-47 |
| Msa0857640 | Msa1058650 | 0.803987 | 2.681381e-49 | -8.615850e-47 |
| Msa0861130 | Msa1058650 | 0.815909 | 7.261606e-52 | -8.615850e-47 |
| Msa0969520 | Msa1058650 | 0.812801 | 3.531139e-51 | -8.615850e-47 |
| Msa0976670 | Msa1058650 | 0.813520 | 2.455300e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058650 | MtrunA17_Chr1g0146881 | 94.706 | 170 | 8 | 1 | 65 | 234 | 59 | 227 | 6.88e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058650 | AT5G53050.1 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.59e-76 | 234 |
| Msa1058650 | AT5G53050.6 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.74e-76 | 234 |
| Msa1058650 | AT5G53050.2 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.02e-75 | 235 |
| Msa1058650 | AT5G53050.3 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.02e-75 | 235 |
| Msa1058650 | AT5G53050.5 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.08e-75 | 233 |
| Msa1058650 | AT5G53050.4 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 5.58e-75 | 234 |
Find 81 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTTTGTTGGATCATTT+AGG | 0.249536 | 7_2:-43717637 | Msa1058650:CDS |
| CTGAAAAGAAGCTTCAATTT+AGG | 0.255528 | 7_2:-43716108 | Msa1058650:CDS |
| ATCCCTCCTCTTTGTTAAAC+TGG | 0.287597 | 7_2:+43716001 | None:intergenic |
| GGATCATTTAGGTTGGAAAA+AGG | 0.303157 | 7_2:-43717626 | Msa1058650:CDS |
| TCAACTTTAGCTCTTTGTTC+AGG | 0.360825 | 7_2:+43716545 | None:intergenic |
| ACGATGAAGACGACGCCGTT+TGG | 0.368982 | 7_2:-43718299 | Msa1058650:CDS |
| GAGTAATCGGACTTTCTAAT+AGG | 0.372313 | 7_2:+43718195 | None:intergenic |
| CCACAAATAAAAGCTTTAAC+TGG | 0.376314 | 7_2:-43718336 | Msa1058650:CDS |
| GTACTGTACCTGATACAATA+TGG | 0.402588 | 7_2:+43716134 | None:intergenic |
| GACTCTTTGCCTTCAAGAAT+CGG | 0.405184 | 7_2:+43716567 | None:intergenic |
| GTGAAAGATAAGAAAGATCT+TGG | 0.408538 | 7_2:-43716051 | Msa1058650:three_prime_UTR |
| CATTGCTTACCGATTCTTGA+AGG | 0.414174 | 7_2:-43716576 | Msa1058650:CDS |
| TTGCTCAATGCAACAGGTGG+TGG | 0.415046 | 7_2:-43717384 | Msa1058650:CDS |
| GAGGAGAACCATATTGTATC+AGG | 0.416982 | 7_2:-43716142 | Msa1058650:CDS |
| AAAGGATGCAATTACTTTGT+TGG | 0.418955 | 7_2:-43717647 | Msa1058650:CDS |
| TCTTTCTTATCTTTCACCTT+GGG | 0.419428 | 7_2:+43716057 | None:intergenic |
| AGAGAGGCGGCGGTGGGAGG+AGG | 0.421387 | 7_2:+43718566 | None:intergenic |
| CTGATGTGGCAGGGGTGGTT+TGG | 0.421704 | 7_2:-43718705 | Msa1058650:intron |
| GCCATGGAGAGAACTCTATC+AGG | 0.426456 | 7_2:+43717408 | None:intergenic |
| GGTACACCCGCTGATGTGGC+AGG | 0.434777 | 7_2:-43718715 | None:intergenic |
| ATGGCCTTGCTCAATGCAAC+AGG | 0.435885 | 7_2:-43717390 | Msa1058650:CDS |
| GTCGTAGTTGTTGAGGGAAA+AGG | 0.437031 | 7_2:+43718588 | None:intergenic |
| GGCTTCCACGCATGAAGGAT+GGG | 0.444335 | 7_2:-43718362 | Msa1058650:CDS |
| TGGAAGAACATACGAGTAAT+CGG | 0.447419 | 7_2:+43718182 | None:intergenic |
| CGTGCTTTACTTGTGAATAG+TGG | 0.457639 | 7_2:+43716513 | None:intergenic |
| TTGATAATCGGGGCGTCGGT+CGG | 0.461416 | 7_2:-43718227 | Msa1058650:CDS |
| TGTTGAGGGAAAAGGAGAGA+TGG | 0.464899 | 7_2:+43718596 | None:intergenic |
| ATCTTTCTTATCTTTCACCT+TGG | 0.466513 | 7_2:+43716056 | None:intergenic |
| CTTTGTTGGATCATTTAGGT+TGG | 0.470243 | 7_2:-43717633 | Msa1058650:CDS |
| GGAGGAGGTCGTAGTTGTTG+AGG | 0.482808 | 7_2:+43718581 | None:intergenic |
| TCGGACAAGAGAGGCGGCGG+TGG | 0.482815 | 7_2:+43718559 | None:intergenic |
| GTTTAACAAAGAGGAGGGAT+TGG | 0.488431 | 7_2:-43715998 | Msa1058650:three_prime_UTR |
| GAGGAGGTCGTAGTTGTTGA+GGG | 0.490009 | 7_2:+43718582 | None:intergenic |
| CAATATGGTTCTCCTCTTCA+CGG | 0.490112 | 7_2:+43716149 | None:intergenic |
| TGGCTTCCACGCATGAAGGA+TGG | 0.494938 | 7_2:-43718363 | Msa1058650:CDS |
| ATCACCTTCACCACTCCAAA+CGG | 0.505169 | 7_2:+43718284 | None:intergenic |
| ACGGCGTCGTCTTCATCGTT+AGG | 0.516498 | 7_2:+43718303 | None:intergenic |
| AGCTTGTAAATTAGAAGCAA+TGG | 0.522301 | 7_2:-43717433 | Msa1058650:CDS |
| ACAAAGAGCTAAAGTTGACT+TGG | 0.529062 | 7_2:-43716540 | Msa1058650:CDS |
| ACAAGAGAGGCGGCGGTGGG+AGG | 0.530471 | 7_2:+43718563 | None:intergenic |
| ACCGATGATGAGGAGAACTT+TGG | 0.530722 | 7_2:+43718480 | None:intergenic |
| GAATATCTTGAGGAATATGT+TGG | 0.532265 | 7_2:-43716174 | Msa1058650:CDS |
| GGTGATAATGAGGCCGGCGG+TGG | 0.532443 | 7_2:-43718267 | Msa1058650:CDS |
| GCTTCCACGCATGAAGGATG+GGG | 0.533159 | 7_2:-43718361 | Msa1058650:CDS |
| TGTTGCATTGAGCAAGGCCA+TGG | 0.536559 | 7_2:+43717392 | None:intergenic |
| ACCCGCTGATGTGGCAGGGG+TGG | 0.536654 | 7_2:-43718710 | None:intergenic |
| CGGACAAGAGAGGCGGCGGT+GGG | 0.544804 | 7_2:+43718560 | None:intergenic |
| TACACCCGCTGATGTGGCAG+GGG | 0.546954 | 7_2:-43718713 | None:intergenic |
| GTACACCCGCTGATGTGGCA+GGG | 0.560294 | 7_2:-43718714 | None:intergenic |
| TACCAGTTTAACAAAGAGGA+GGG | 0.568079 | 7_2:-43716003 | Msa1058650:three_prime_UTR |
| GGATTGGCTTCCACGCATGA+AGG | 0.568079 | 7_2:-43718367 | Msa1058650:CDS |
| AAAATCTTCTACAGAACATA+CGG | 0.569688 | 7_2:-43718514 | Msa1058650:CDS |
| GTCATTGTTGAGGTGAGCAT+CGG | 0.572893 | 7_2:+43718540 | None:intergenic |
| ACCAAAGTTCTCCTCATCAT+CGG | 0.577196 | 7_2:-43718481 | Msa1058650:intron |
| TCCTGATAGAGTTCTCTCCA+TGG | 0.577551 | 7_2:-43717409 | Msa1058650:CDS |
| GACGCCGTTTGGAGTGGTGA+AGG | 0.581907 | 7_2:-43718288 | Msa1058650:CDS |
| GGTGAAGGTGATAATGAGGC+CGG | 0.582350 | 7_2:-43718273 | Msa1058650:CDS |
| GCATCGGACAAGAGAGGCGG+CGG | 0.595044 | 7_2:+43718556 | None:intergenic |
| GTATTACCAGTTTAACAAAG+AGG | 0.598288 | 7_2:-43716007 | Msa1058650:three_prime_UTR |
| GTGCTTTACTTGTGAATAGT+GGG | 0.598972 | 7_2:+43716514 | None:intergenic |
| TGGGTGCAGAACAAAGATCA+TGG | 0.599647 | 7_2:-43717671 | Msa1058650:intron |
| GAAGACGACGCCGTTTGGAG+TGG | 0.608024 | 7_2:-43718294 | Msa1058650:CDS |
| TCTTGGAATCATGAAAGTCA+AGG | 0.609272 | 7_2:-43716034 | Msa1058650:three_prime_UTR |
| TGGAGGAGATACCGATGATG+AGG | 0.610151 | 7_2:+43718470 | None:intergenic |
| CAGAACAAAGATCATGGCAA+AGG | 0.612024 | 7_2:-43717665 | Msa1058650:CDS |
| TTACCAGTTTAACAAAGAGG+AGG | 0.617647 | 7_2:-43716004 | Msa1058650:three_prime_UTR |
| ATGATGAGGAGAACTTTGGT+AGG | 0.620209 | 7_2:+43718484 | None:intergenic |
| ACCACCTGTTGCATTGAGCA+AGG | 0.621860 | 7_2:+43717386 | None:intergenic |
| CTTCAAGAATCGGTAAGCAA+TGG | 0.628174 | 7_2:+43716577 | None:intergenic |
| GCAAACTTCAATACCACCGC+CGG | 0.628811 | 7_2:+43718254 | None:intergenic |
| TCACGTGCAGGAATATCTTG+AGG | 0.635000 | 7_2:-43716184 | Msa1058650:intron |
| TTCTACAGAACATACGGTCG+CGG | 0.635565 | 7_2:-43718508 | Msa1058650:CDS |
| CTTCCACGCATGAAGGATGG+GGG | 0.637881 | 7_2:-43718360 | Msa1058650:CDS |
| AGGTGAGCATCGGACAAGAG+AGG | 0.648563 | 7_2:+43718550 | None:intergenic |
| AATATGTTGGAACCGTGAAG+AGG | 0.650450 | 7_2:-43716161 | Msa1058650:CDS |
| GTCATGACTTGATATACCCA+AGG | 0.651402 | 7_2:-43716073 | Msa1058650:exon |
| GAGTGGTGAAGGTGATAATG+AGG | 0.666112 | 7_2:-43718277 | Msa1058650:CDS |
| AAGCAATGGAAATTGTTCGT+CGG | 0.679393 | 7_2:+43716591 | None:intergenic |
| TGAGCATCGGACAAGAGAGG+CGG | 0.682115 | 7_2:+43718553 | None:intergenic |
| GCCTTGCTCAATGCAACAGG+TGG | 0.684486 | 7_2:-43717387 | Msa1058650:CDS |
| GAAGGTGATAATGAGGCCGG+CGG | 0.694791 | 7_2:-43718270 | Msa1058650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGAAAAGTTAAAAAATT+GGG | + | chr7_2:43717137-43717156 | None:intergenic | 10.0% |
| !!! | TTTAAATTTTGCTAAATTTG+TGG | - | chr7_2:43716280-43716299 | Msa1058650:intron | 15.0% |
| !!! | TGAAATGAAATTTTGAATAT+TGG | - | chr7_2:43716976-43716995 | Msa1058650:intron | 15.0% |
| !! | GAATAGAAAAGTTAAAAAAT+TGG | + | chr7_2:43717138-43717157 | None:intergenic | 15.0% |
| !! | AAATGGTTTATTATAAGATT+TGG | - | chr7_2:43717169-43717188 | Msa1058650:intron | 15.0% |
| !!! | AATGTTTCGATTTTTTTTTA+CGG | - | chr7_2:43717383-43717402 | Msa1058650:CDS | 15.0% |
| !! | ATTAAATTTGTATTAAGCAT+TGG | + | chr7_2:43717925-43717944 | None:intergenic | 15.0% |
| !! | ATGCTTAATACAAATTTAAT+CGG | - | chr7_2:43717925-43717944 | Msa1058650:intron | 15.0% |
| !!! | TTTTAAAATCACTACTTTAA+TGG | + | chr7_2:43718282-43718301 | None:intergenic | 15.0% |
| !! | TTATAGTAAGGAAATGAAAA+AGG | + | chr7_2:43716534-43716553 | None:intergenic | 20.0% |
| !! | ATTTCCTTACTATAAAAATG+AGG | - | chr7_2:43716539-43716558 | Msa1058650:CDS | 20.0% |
| !!! | TTATTTTTGAATATGCCATA+AGG | - | chr7_2:43716720-43716739 | Msa1058650:intron | 20.0% |
| !!! | GTGTTTTTTATAAGCTATAT+TGG | - | chr7_2:43716742-43716761 | Msa1058650:intron | 20.0% |
| !! | TAAAACTATGTTTAGATTGA+TGG | + | chr7_2:43716949-43716968 | None:intergenic | 20.0% |
| !! | CTATTCAGTTTAAATTCAAA+TGG | - | chr7_2:43717152-43717171 | Msa1058650:intron | 20.0% |
| !!! | GTTTATTATAAGATTTGGTT+AGG | - | chr7_2:43717174-43717193 | Msa1058650:intron | 20.0% |
| !! | AATTATGTTTGTATTGAAAC+AGG | - | chr7_2:43717225-43717244 | Msa1058650:intron | 20.0% |
| !!! | AATTTCTTACTACTGATTTT+AGG | - | chr7_2:43717724-43717743 | Msa1058650:intron | 20.0% |
| !! | TGCAATTAGATATATAATGT+TGG | - | chr7_2:43717956-43717975 | Msa1058650:intron | 20.0% |
| !! | TTAAAAAATTGAATCACTCA+AGG | - | chr7_2:43718296-43718315 | Msa1058650:CDS | 20.0% |
| !!! | TATTAACATTAAGTTGAAGA+AGG | - | chr7_2:43718368-43718387 | Msa1058650:CDS | 20.0% |
| ! | AAAATCTTCTACAGAACATA+CGG | - | chr7_2:43716176-43716195 | Msa1058650:CDS | 25.0% |
| !!! | ATGACCTCATTTTTATAGTA+AGG | + | chr7_2:43716546-43716565 | None:intergenic | 25.0% |
| ! | AGCTTATAAAAAACACCTTA+TGG | + | chr7_2:43716738-43716757 | None:intergenic | 25.0% |
| !!! | TGTTAGAAGTCATTTGATTT+TGG | - | chr7_2:43716864-43716883 | Msa1058650:intron | 25.0% |
| !! | TTTTGAATATTGGTGAATGA+TGG | - | chr7_2:43716986-43717005 | Msa1058650:intron | 25.0% |
| ! | TTTGAATATTGGTGAATGAT+GGG | - | chr7_2:43716987-43717006 | Msa1058650:intron | 25.0% |
| ! | ATTACTTTGTTGGATCATTT+AGG | - | chr7_2:43717053-43717072 | Msa1058650:intron | 25.0% |
| ! | CATTTCACAGATTTATACAA+GGG | + | chr7_2:43717367-43717386 | None:intergenic | 25.0% |
| ! | ACATTTCACAGATTTATACA+AGG | + | chr7_2:43717368-43717387 | None:intergenic | 25.0% |
| ! | TAATATAGAAGAGAAAGTCA+CGG | - | chr7_2:43717591-43717610 | Msa1058650:intron | 25.0% |
| ! | TTTAATTACAAACGTAGTTC+AGG | - | chr7_2:43717673-43717692 | Msa1058650:intron | 25.0% |
| ! | AATGGTAGTTTAATATAGCT+GGG | + | chr7_2:43718264-43718283 | None:intergenic | 25.0% |
| ! | TAATGGTAGTTTAATATAGC+TGG | + | chr7_2:43718265-43718284 | None:intergenic | 25.0% |
| ! | GTATATGATATAAAAGAGTC+TGG | - | chr7_2:43718326-43718345 | Msa1058650:CDS | 25.0% |
| !! | AAATTTTATATATCACGTGC+AGG | - | chr7_2:43718494-43718513 | Msa1058650:CDS | 25.0% |
| TTTGGTAAATTCACGTGATA+AGG | - | chr7_2:43716003-43716022 | Msa1058650:three_prime_UTR | 30.0% | |
| TTGGTAAATTCACGTGATAA+GGG | - | chr7_2:43716004-43716023 | Msa1058650:three_prime_UTR | 30.0% | |
| ATGAAGATGAAGAAGATGAA+TGG | + | chr7_2:43716243-43716262 | None:intergenic | 30.0% | |
| TTTGTGGAGAATGAATTGAA+TGG | - | chr7_2:43716296-43716315 | Msa1058650:intron | 30.0% | |
| GAGAATGAATTGAATGGTTT+AGG | - | chr7_2:43716302-43716321 | Msa1058650:intron | 30.0% | |
| ! | TGAATTGAATGGTTTAGGAT+TGG | - | chr7_2:43716307-43716326 | Msa1058650:intron | 30.0% |
| !! | CCAGTTAAAGCTTTTATTTG+TGG | + | chr7_2:43716357-43716376 | None:intergenic | 30.0% |
| ! | CCACAAATAAAAGCTTTAAC+TGG | - | chr7_2:43716354-43716373 | Msa1058650:intron | 30.0% |
| !! | AAGTTTGCGCTTTTGATAAT+CGG | - | chr7_2:43716451-43716470 | Msa1058650:intron | 30.0% |
| TAGTAAGGAAATGAAAAAGG+TGG | + | chr7_2:43716531-43716550 | None:intergenic | 30.0% | |
| ! | ACTATGTTTAGATTGATGGT+GGG | + | chr7_2:43716945-43716964 | None:intergenic | 30.0% |
| AACTATGTTTAGATTGATGG+TGG | + | chr7_2:43716946-43716965 | None:intergenic | 30.0% | |
| AAAGGATGCAATTACTTTGT+TGG | - | chr7_2:43717043-43717062 | Msa1058650:intron | 30.0% | |
| AGCTTGTAAATTAGAAGCAA+TGG | - | chr7_2:43717257-43717276 | Msa1058650:intron | 30.0% | |
| ! | TGGTTTTCAATGTTTTCCAA+AGG | - | chr7_2:43717326-43717345 | Msa1058650:intron | 30.0% |
| GTCACATAATATAGTACCTT+TGG | + | chr7_2:43717345-43717364 | None:intergenic | 30.0% | |
| GCTAGTTAACTAACTACATT+GGG | - | chr7_2:43717446-43717465 | Msa1058650:CDS | 30.0% | |
| TAACTAACTACATTGGGAAT+TGG | - | chr7_2:43717452-43717471 | Msa1058650:intron | 30.0% | |
| AACTAACTACATTGGGAATT+GGG | - | chr7_2:43717453-43717472 | Msa1058650:intron | 30.0% | |
| CTAAATTTCTCCTAAAGGTT+TGG | + | chr7_2:43717790-43717809 | None:intergenic | 30.0% | |
| CTCAACTAAATTTCTCCTAA+AGG | + | chr7_2:43717795-43717814 | None:intergenic | 30.0% | |
| GGTTTCCTATGAACTATTAT+CGG | - | chr7_2:43718007-43718026 | Msa1058650:intron | 30.0% | |
| TAGAACAAGAACCTCTTATA+AGG | + | chr7_2:43718064-43718083 | None:intergenic | 30.0% | |
| ATGGTAGTTTAATATAGCTG+GGG | + | chr7_2:43718263-43718282 | None:intergenic | 30.0% | |
| !!! | TATCTTGTTTTTCCAGTCTT+GGG | - | chr7_2:43718392-43718411 | Msa1058650:intron | 30.0% |
| GCACATTAACACAAATTTCT+AGG | + | chr7_2:43718449-43718468 | None:intergenic | 30.0% | |
| TGTGTTAATGTGCTATCTTT+AGG | - | chr7_2:43718456-43718475 | Msa1058650:intron | 30.0% | |
| GAATATCTTGAGGAATATGT+TGG | - | chr7_2:43718516-43718535 | Msa1058650:CDS | 30.0% | |
| CTGAAAAGAAGCTTCAATTT+AGG | - | chr7_2:43718582-43718601 | Msa1058650:CDS | 30.0% | |
| TCTTTCTTATCTTTCACCTT+GGG | + | chr7_2:43718636-43718655 | None:intergenic | 30.0% | |
| ATCTTTCTTATCTTTCACCT+TGG | + | chr7_2:43718637-43718656 | None:intergenic | 30.0% | |
| GTGAAAGATAAGAAAGATCT+TGG | - | chr7_2:43718639-43718658 | Msa1058650:intron | 30.0% | |
| GTATTACCAGTTTAACAAAG+AGG | - | chr7_2:43718683-43718702 | Msa1058650:intron | 30.0% | |
| TGGTAAATTCACGTGATAAG+GGG | - | chr7_2:43716005-43716024 | Msa1058650:three_prime_UTR | 35.0% | |
| !! | AGATTTTGACGTCATTGTTG+AGG | + | chr7_2:43716163-43716182 | None:intergenic | 35.0% |
| AAGATGAAGAAGATGAATGG+AGG | + | chr7_2:43716240-43716259 | None:intergenic | 35.0% | |
| !! | AGTTTGCGCTTTTGATAATC+GGG | - | chr7_2:43716452-43716471 | Msa1058650:intron | 35.0% |
| GAGTAATCGGACTTTCTAAT+AGG | + | chr7_2:43716498-43716517 | None:intergenic | 35.0% | |
| TGGAAGAACATACGAGTAAT+CGG | + | chr7_2:43716511-43716530 | None:intergenic | 35.0% | |
| CTACGAAGTTCCAATGATTT+AGG | - | chr7_2:43716593-43716612 | Msa1058650:CDS | 35.0% | |
| CCAAACATGTCCTAAATCAT+TGG | + | chr7_2:43716606-43716625 | None:intergenic | 35.0% | |
| ! | CCAATGATTTAGGACATGTT+TGG | - | chr7_2:43716603-43716622 | Msa1058650:intron | 35.0% |
| ! | TGAATGATGGGAATGATTGT+TGG | - | chr7_2:43716999-43717018 | Msa1058650:intron | 35.0% |
| ! | GAATGATGGGAATGATTGTT+GGG | - | chr7_2:43717000-43717019 | Msa1058650:intron | 35.0% |
| CTTTGTTGGATCATTTAGGT+TGG | - | chr7_2:43717057-43717076 | Msa1058650:intron | 35.0% | |
| !! | GGATCATTTAGGTTGGAAAA+AGG | - | chr7_2:43717064-43717083 | Msa1058650:intron | 35.0% |
| !! | TGGAAAAAGGCACATGTTTT+TGG | - | chr7_2:43717077-43717096 | Msa1058650:intron | 35.0% |
| !! | GGAAAAAGGCACATGTTTTT+GGG | - | chr7_2:43717078-43717097 | Msa1058650:intron | 35.0% |
| !!! | ACATGTTTTTGGGCATTCAA+TGG | - | chr7_2:43717088-43717107 | Msa1058650:intron | 35.0% |
| !!! | CATGTTTTTGGGCATTCAAT+GGG | - | chr7_2:43717089-43717108 | Msa1058650:intron | 35.0% |
| ! | CGTTATGTGATTAGAAGCAT+TGG | - | chr7_2:43717406-43717425 | Msa1058650:CDS | 35.0% |
| CGCTAGTTAACTAACTACAT+TGG | - | chr7_2:43717445-43717464 | Msa1058650:CDS | 35.0% | |
| GGAGTTGCATACATAACAAA+TGG | - | chr7_2:43717701-43717720 | Msa1058650:intron | 35.0% | |
| !! | TGATTTTAGGTCATCCTTGA+GGG | - | chr7_2:43717737-43717756 | Msa1058650:intron | 35.0% |
| AGGTTTGGATGATCGATAAT+TGG | + | chr7_2:43717775-43717794 | None:intergenic | 35.0% | |
| TATCGATCATCCAAACCTTT+AGG | - | chr7_2:43717777-43717796 | Msa1058650:intron | 35.0% | |
| ATCTGTTTGACACATGTACA+TGG | - | chr7_2:43717986-43718005 | Msa1058650:intron | 35.0% | |
| AAAGGCCGATAATAGTTCAT+AGG | + | chr7_2:43718015-43718034 | None:intergenic | 35.0% | |
| AAAACTCCAAACTAGTGCAA+AGG | + | chr7_2:43718033-43718052 | None:intergenic | 35.0% | |
| AAGCAATGGAAATTGTTCGT+CGG | + | chr7_2:43718102-43718121 | None:intergenic | 35.0% | |
| !! | TCAACTTTAGCTCTTTGTTC+AGG | + | chr7_2:43718148-43718167 | None:intergenic | 35.0% |
| ACAAAGAGCTAAAGTTGACT+TGG | - | chr7_2:43718150-43718169 | Msa1058650:intron | 35.0% | |
| GTGCTTTACTTGTGAATAGT+GGG | + | chr7_2:43718179-43718198 | None:intergenic | 35.0% | |
| !!! | CTATCTTGTTTTTCCAGTCT+TGG | - | chr7_2:43718391-43718410 | Msa1058650:intron | 35.0% |
| GTACTGTACCTGATACAATA+TGG | + | chr7_2:43718559-43718578 | None:intergenic | 35.0% | |
| TCTTGGAATCATGAAAGTCA+AGG | - | chr7_2:43718656-43718675 | Msa1058650:intron | 35.0% | |
| TTACCAGTTTAACAAAGAGG+AGG | - | chr7_2:43718686-43718705 | Msa1058650:intron | 35.0% | |
| TACCAGTTTAACAAAGAGGA+GGG | - | chr7_2:43718687-43718706 | Msa1058650:intron | 35.0% | |
| AGAAGATCAAGTGGTTGTGA+AGG | + | chr7_2:43716045-43716064 | None:intergenic | 40.0% | |
| AGAAAGAGGAGAAGATCAAG+TGG | + | chr7_2:43716054-43716073 | None:intergenic | 40.0% | |
| GAGCTTAGAGAGATAGAAAG+AGG | + | chr7_2:43716068-43716087 | None:intergenic | 40.0% | |
| ATGATGAGGAGAACTTTGGT+AGG | + | chr7_2:43716209-43716228 | None:intergenic | 40.0% | |
| ACCAAAGTTCTCCTCATCAT+CGG | - | chr7_2:43716209-43716228 | Msa1058650:intron | 40.0% | |
| !! | GTTTGCGCTTTTGATAATCG+GGG | - | chr7_2:43716453-43716472 | Msa1058650:intron | 40.0% |
| ! | ATTTTGTTGAAGCCACAGTG+TGG | + | chr7_2:43716896-43716915 | None:intergenic | 40.0% |
| !! | TGGTGGGTTTAGCAAAATCA+CGG | + | chr7_2:43716929-43716948 | None:intergenic | 40.0% |
| CAGAACAAAGATCATGGCAA+AGG | - | chr7_2:43717025-43717044 | Msa1058650:intron | 40.0% | |
| ACTACATTGGGAATTGGGAT+TGG | - | chr7_2:43717458-43717477 | Msa1058650:intron | 40.0% | |
| CTACATTGGGAATTGGGATT+GGG | - | chr7_2:43717459-43717478 | Msa1058650:intron | 40.0% | |
| AGAGATAAGTGACAGAGAAG+TGG | - | chr7_2:43717539-43717558 | Msa1058650:intron | 40.0% | |
| ACAAACGTAGTTCAGGATAG+TGG | - | chr7_2:43717680-43717699 | Msa1058650:intron | 40.0% | |
| !! | CTGATTTTAGGTCATCCTTG+AGG | - | chr7_2:43717736-43717755 | Msa1058650:intron | 40.0% |
| !! | ACTAGTTTGGAGTTTTCCTC+CGG | - | chr7_2:43718037-43718056 | Msa1058650:intron | 40.0% |
| CAAGAACCTCTTATAAGGAC+CGG | + | chr7_2:43718059-43718078 | None:intergenic | 40.0% | |
| CTTCAAGAATCGGTAAGCAA+TGG | + | chr7_2:43718116-43718135 | None:intergenic | 40.0% | |
| !! | CATTGCTTACCGATTCTTGA+AGG | - | chr7_2:43718114-43718133 | Msa1058650:intron | 40.0% |
| GACTCTTTGCCTTCAAGAAT+CGG | + | chr7_2:43718126-43718145 | None:intergenic | 40.0% | |
| CGTGCTTTACTTGTGAATAG+TGG | + | chr7_2:43718180-43718199 | None:intergenic | 40.0% | |
| TCACAAGTAAAGCACGTTCT+TGG | - | chr7_2:43718184-43718203 | Msa1058650:intron | 40.0% | |
| TTTAATATAGCTGGGGAGAG+GGG | + | chr7_2:43718256-43718275 | None:intergenic | 40.0% | |
| GTTTAATATAGCTGGGGAGA+GGG | + | chr7_2:43718257-43718276 | None:intergenic | 40.0% | |
| AGTTTAATATAGCTGGGGAG+AGG | + | chr7_2:43718258-43718277 | None:intergenic | 40.0% | |
| AATATGTTGGAACCGTGAAG+AGG | - | chr7_2:43718529-43718548 | Msa1058650:CDS | 40.0% | |
| CAATATGGTTCTCCTCTTCA+CGG | + | chr7_2:43718544-43718563 | None:intergenic | 40.0% | |
| GAGGAGAACCATATTGTATC+AGG | - | chr7_2:43718548-43718567 | Msa1058650:CDS | 40.0% | |
| GTCATGACTTGATATACCCA+AGG | - | chr7_2:43718617-43718636 | Msa1058650:intron | 40.0% | |
| ATCCCTCCTCTTTGTTAAAC+TGG | + | chr7_2:43718692-43718711 | None:intergenic | 40.0% | |
| GTTTAACAAAGAGGAGGGAT+TGG | - | chr7_2:43718692-43718711 | Msa1058650:intron | 40.0% | |
| TCACGTGATAAGGGGTAGTT+TGG | - | chr7_2:43716013-43716032 | Msa1058650:three_prime_UTR | 45.0% | |
| TGTTGAGGGAAAAGGAGAGA+TGG | + | chr7_2:43716097-43716116 | None:intergenic | 45.0% | |
| GTCGTAGTTGTTGAGGGAAA+AGG | + | chr7_2:43716105-43716124 | None:intergenic | 45.0% | |
| GTCATTGTTGAGGTGAGCAT+CGG | + | chr7_2:43716153-43716172 | None:intergenic | 45.0% | |
| TTCTACAGAACATACGGTCG+CGG | - | chr7_2:43716182-43716201 | Msa1058650:intron | 45.0% | |
| ACCGATGATGAGGAGAACTT+TGG | + | chr7_2:43716213-43716232 | None:intergenic | 45.0% | |
| ATCACCTTCACCACTCCAAA+CGG | + | chr7_2:43716409-43716428 | None:intergenic | 45.0% | |
| ! | GAGTGGTGAAGGTGATAATG+AGG | - | chr7_2:43716413-43716432 | Msa1058650:intron | 45.0% |
| ! | TTTTGGCAAAAGCCACACTG+TGG | - | chr7_2:43716881-43716900 | Msa1058650:intron | 45.0% |
| TGGGTGCAGAACAAAGATCA+TGG | - | chr7_2:43717019-43717038 | Msa1058650:intron | 45.0% | |
| TCCTGATAGAGTTCTCTCCA+TGG | - | chr7_2:43717281-43717300 | Msa1058650:intron | 45.0% | |
| ATTGGGATTGGGTGTCTTTG+TGG | - | chr7_2:43717470-43717489 | Msa1058650:intron | 45.0% | |
| AGTGACAGAGAAGTGGTAGT+TGG | - | chr7_2:43717546-43717565 | Msa1058650:intron | 45.0% | |
| GTGACAGAGAAGTGGTAGTT+GGG | - | chr7_2:43717547-43717566 | Msa1058650:intron | 45.0% | |
| !! | TTTTAGGTCATCCTTGAGGG+TGG | - | chr7_2:43717740-43717759 | Msa1058650:intron | 45.0% |
| TATCGGCCTTTGCACTAGTT+TGG | - | chr7_2:43718024-43718043 | Msa1058650:intron | 45.0% | |
| TTTCCTCCGGTCCTTATAAG+AGG | - | chr7_2:43718050-43718069 | Msa1058650:intron | 45.0% | |
| TTCGTCGGTCAAACTGCAAA+AGG | + | chr7_2:43718087-43718106 | None:intergenic | 45.0% | |
| TCACGTGCAGGAATATCTTG+AGG | - | chr7_2:43718506-43718525 | Msa1058650:CDS | 45.0% | |
| GAGGAGGTCGTAGTTGTTGA+GGG | + | chr7_2:43716111-43716130 | None:intergenic | 50.0% | |
| TGGAGGAGATACCGATGATG+AGG | + | chr7_2:43716223-43716242 | None:intergenic | 50.0% | |
| ! | GGTGAAGGTGATAATGAGGC+CGG | - | chr7_2:43716417-43716436 | Msa1058650:intron | 50.0% |
| GCAAACTTCAATACCACCGC+CGG | + | chr7_2:43716439-43716458 | None:intergenic | 50.0% | |
| !! | GCTTTTGATAATCGGGGCGT+CGG | - | chr7_2:43716459-43716478 | Msa1058650:intron | 50.0% |
| GCCATGGAGAGAACTCTATC+AGG | + | chr7_2:43717285-43717304 | None:intergenic | 50.0% | |
| TGTTGCATTGAGCAAGGCCA+TGG | + | chr7_2:43717301-43717320 | None:intergenic | 50.0% | |
| ! | ATGGCCTTGCTCAATGCAAC+AGG | - | chr7_2:43717300-43717319 | Msa1058650:intron | 50.0% |
| ACCACCTGTTGCATTGAGCA+AGG | + | chr7_2:43717307-43717326 | None:intergenic | 50.0% | |
| TTGCTCAATGCAACAGGTGG+TGG | - | chr7_2:43717306-43717325 | Msa1058650:intron | 50.0% | |
| GGATTGGGTGTCTTTGTGGA+GGG | - | chr7_2:43717474-43717493 | Msa1058650:intron | 50.0% | |
| GCGATTCGTGACTTTGTGGA+GGG | + | chr7_2:43717624-43717643 | None:intergenic | 50.0% | |
| GATCGCGATTCGTGACTTTG+TGG | + | chr7_2:43717628-43717647 | None:intergenic | 50.0% | |
| CAAAGTCACGAATCGCGATC+CGG | - | chr7_2:43717628-43717647 | Msa1058650:CDS | 50.0% | |
| AAAGTCACGAATCGCGATCC+GGG | - | chr7_2:43717629-43717648 | Msa1058650:CDS | 50.0% | |
| GAACCTCTTATAAGGACCGG+AGG | + | chr7_2:43718056-43718075 | None:intergenic | 50.0% | |
| CTTCAGAGTAGACCCAAGAC+TGG | + | chr7_2:43718407-43718426 | None:intergenic | 50.0% | |
| GGAGGAGGTCGTAGTTGTTG+AGG | + | chr7_2:43716112-43716131 | None:intergenic | 55.0% | |
| !! | TGAGCATCGGACAAGAGAGG+CGG | + | chr7_2:43716140-43716159 | None:intergenic | 55.0% |
| !! | AGGTGAGCATCGGACAAGAG+AGG | + | chr7_2:43716143-43716162 | None:intergenic | 55.0% |
| !! | GGATTGGCTTCCACGCATGA+AGG | - | chr7_2:43716323-43716342 | Msa1058650:intron | 55.0% |
| TGGCTTCCACGCATGAAGGA+TGG | - | chr7_2:43716327-43716346 | Msa1058650:intron | 55.0% | |
| GGCTTCCACGCATGAAGGAT+GGG | - | chr7_2:43716328-43716347 | Msa1058650:intron | 55.0% | |
| GCTTCCACGCATGAAGGATG+GGG | - | chr7_2:43716329-43716348 | Msa1058650:intron | 55.0% | |
| CTTCCACGCATGAAGGATGG+GGG | - | chr7_2:43716330-43716349 | Msa1058650:intron | 55.0% | |
| ACGGCGTCGTCTTCATCGTT+AGG | + | chr7_2:43716390-43716409 | None:intergenic | 55.0% | |
| ACGATGAAGACGACGCCGTT+TGG | - | chr7_2:43716391-43716410 | Msa1058650:intron | 55.0% | |
| ! | GAAGGTGATAATGAGGCCGG+CGG | - | chr7_2:43716420-43716439 | Msa1058650:intron | 55.0% |
| !! | TTGATAATCGGGGCGTCGGT+CGG | - | chr7_2:43716463-43716482 | Msa1058650:intron | 55.0% |
| GCCTTGCTCAATGCAACAGG+TGG | - | chr7_2:43717303-43717322 | Msa1058650:intron | 55.0% | |
| GGGATTGGGTGTCTTTGTGG+AGG | - | chr7_2:43717473-43717492 | Msa1058650:intron | 55.0% | |
| CGCGATTCGTGACTTTGTGG+AGG | + | chr7_2:43717625-43717644 | None:intergenic | 55.0% | |
| TGTGACTAGCAAGCACCACC+CGG | + | chr7_2:43717650-43717669 | None:intergenic | 55.0% | |
| GGACTCAATTGCCACCCTCA+AGG | + | chr7_2:43717754-43717773 | None:intergenic | 55.0% | |
| ATAGCTGGGGAGAGGGGTTA+GGG | + | chr7_2:43718250-43718269 | None:intergenic | 55.0% | |
| TATAGCTGGGGAGAGGGGTT+AGG | + | chr7_2:43718251-43718270 | None:intergenic | 55.0% | |
| GAAGACGACGCCGTTTGGAG+TGG | - | chr7_2:43716396-43716415 | Msa1058650:intron | 60.0% | |
| ! | GACGCCGTTTGGAGTGGTGA+AGG | - | chr7_2:43716402-43716421 | Msa1058650:intron | 60.0% |
| GCATCGGACAAGAGAGGCGG+CGG | + | chr7_2:43716137-43716156 | None:intergenic | 65.0% | |
| GGACCCCCATCCTTCATGCG+TGG | + | chr7_2:43716336-43716355 | None:intergenic | 65.0% | |
| ! | GGTGATAATGAGGCCGGCGG+TGG | - | chr7_2:43716423-43716442 | Msa1058650:intron | 65.0% |
| GTCACGAATCGCGATCCGGG+TGG | - | chr7_2:43717632-43717651 | Msa1058650:CDS | 65.0% | |
| ACAAGAGAGGCGGCGGTGGG+AGG | + | chr7_2:43716130-43716149 | None:intergenic | 70.0% | |
| CGGACAAGAGAGGCGGCGGT+GGG | + | chr7_2:43716133-43716152 | None:intergenic | 70.0% | |
| TCGGACAAGAGAGGCGGCGG+TGG | + | chr7_2:43716134-43716153 | None:intergenic | 70.0% | |
| AGAGAGGCGGCGGTGGGAGG+AGG | + | chr7_2:43716127-43716146 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 43715988 | 43718724 | 43715988 | ID=Msa1058650;Name=Msa1058650 |
| chr7_2 | mRNA | 43715988 | 43718724 | 43715988 | ID=Msa1058650-mRNA-1;Parent=Msa1058650;Name=Msa1058650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.83|0.71|0.85|0.83|0.71|7|101|248 |
| chr7_2 | exon | 43715988 | 43716196 | 43715988 | ID=Msa1058650-mRNA-1:exon:7930;Parent=Msa1058650-mRNA-1 |
| chr7_2 | exon | 43716523 | 43716618 | 43716523 | ID=Msa1058650-mRNA-1:exon:7929;Parent=Msa1058650-mRNA-1 |
| chr7_2 | exon | 43717365 | 43717465 | 43717365 | ID=Msa1058650-mRNA-1:exon:7928;Parent=Msa1058650-mRNA-1 |
| chr7_2 | exon | 43717602 | 43717684 | 43717602 | ID=Msa1058650-mRNA-1:exon:7927;Parent=Msa1058650-mRNA-1 |
| chr7_2 | exon | 43718195 | 43718388 | 43718195 | ID=Msa1058650-mRNA-1:exon:7926;Parent=Msa1058650-mRNA-1 |
| chr7_2 | exon | 43718482 | 43718627 | 43718482 | ID=Msa1058650-mRNA-1:exon:7925;Parent=Msa1058650-mRNA-1 |
| chr7_2 | exon | 43718706 | 43718724 | 43718706 | ID=Msa1058650-mRNA-1:exon:7924;Parent=Msa1058650-mRNA-1 |
| chr7_2 | CDS | 43718706 | 43718724 | 43718706 | ID=Msa1058650-mRNA-1:cds;Parent=Msa1058650-mRNA-1 |
| chr7_2 | CDS | 43718482 | 43718627 | 43718482 | ID=Msa1058650-mRNA-1:cds;Parent=Msa1058650-mRNA-1 |
| chr7_2 | CDS | 43718195 | 43718388 | 43718195 | ID=Msa1058650-mRNA-1:cds;Parent=Msa1058650-mRNA-1 |
| chr7_2 | CDS | 43717602 | 43717684 | 43717602 | ID=Msa1058650-mRNA-1:cds;Parent=Msa1058650-mRNA-1 |
| chr7_2 | CDS | 43717365 | 43717465 | 43717365 | ID=Msa1058650-mRNA-1:cds;Parent=Msa1058650-mRNA-1 |
| chr7_2 | CDS | 43716523 | 43716618 | 43716523 | ID=Msa1058650-mRNA-1:cds;Parent=Msa1058650-mRNA-1 |
| chr7_2 | CDS | 43716089 | 43716196 | 43716089 | ID=Msa1058650-mRNA-1:cds;Parent=Msa1058650-mRNA-1 |
| chr7_2 | three_prime_UTR | 43715988 | 43716088 | 43715988 | ID=Msa1058650-mRNA-1:three_prime_utr;Parent=Msa1058650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
