AlfalfaGEDB | Msa1058640

M. sativa cultivar zhongmu-4 / Msa1058640

KEGG: -
GO: -
PFAM: PF00561.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058640	XP_024630962.1	94.706	170	8	1	65	234	59	227	1.06e-112	337

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058640	G7I3G4	94.706	170	8	1	65	234	59	227	3.57e-112	337

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0075880	Msa1058640	0.804366	2.236233e-49	-8.615850e-47
Msa0084380	Msa1058640	0.811822	5.775677e-51	-8.615850e-47
Msa0223410	Msa1058640	-0.801109	1.051179e-48	-8.615850e-47
Msa0302580	Msa1058640	-0.801400	9.164714e-49	-8.615850e-47
Msa0305190	Msa1058640	0.807807	4.219291e-50	-8.615850e-47
Msa0306210	Msa1058640	-0.802730	4.883609e-49	-8.615850e-47
Msa0325550	Msa1058640	0.809371	1.956319e-50	-8.615850e-47
Msa0340450	Msa1058640	0.813427	2.573415e-51	-8.615850e-47
Msa0433410	Msa1058640	-0.813687	2.255832e-51	-8.615850e-47
Msa0455760	Msa1058640	0.803674	3.114154e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058640	MtrunA17_Chr1g0146881	94.706	170	8	1	65	234	59	227	6.88e-116	337

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1058640	AT5G53050.1	70.000	170	47	2	65	234	50	215	1.59e-76	234
Msa1058640	AT5G53050.6	70.000	170	47	2	65	234	50	215	1.74e-76	234
Msa1058640	AT5G53050.2	70.000	170	47	2	65	234	50	215	1.02e-75	235
Msa1058640	AT5G53050.3	70.000	170	47	2	65	234	50	215	1.02e-75	235
Msa1058640	AT5G53050.5	70.000	170	47	2	65	234	50	215	1.08e-75	233
Msa1058640	AT5G53050.4	70.000	170	47	2	65	234	50	215	5.58e-75	234

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Find 81 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTCTACAGAACATA+CGG	0.569688	7_2:-43674836	Msa1058640:CDS
AAAGGATGCAATTACTTTGT+TGG	0.418955	7_2:-43673969	Msa1058640:CDS
AAGCAATGGAAATTGTTCGT+CGG	0.679393	7_2:+43672913	None:intergenic
AATATGTTGGAACCGTGAAG+AGG	0.650450	7_2:-43672483	Msa1058640:CDS
ACAAAGAGCTAAAGTTGACT+TGG	0.529062	7_2:-43672862	Msa1058640:CDS
ACAAGAGAGGCGGCGGTGGG+AGG	0.530471	7_2:+43674885	None:intergenic
ACCAAAGTTCTCCTCATCAT+CGG	0.577196	7_2:-43674803	Msa1058640:intron
ACCACCTGTTGCATTGAGCA+AGG	0.621860	7_2:+43673708	None:intergenic
ACCCGCTGATGTGGCAGGGG+TGG	0.536654	7_2:-43675032	None:intergenic
ACCGATGATGAGGAGAACTT+TGG	0.530722	7_2:+43674802	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGGTAAATTCACGTGATA+AGG	-	chr7_2:43672325-43672344	Msa1058640:three_prime_UTR	30.0%
TTGGTAAATTCACGTGATAA+GGG	-	chr7_2:43672326-43672345	Msa1058640:three_prime_UTR	30.0%
ATGAAGATGAAGAAGATGAA+TGG	+	chr7_2:43672565-43672584	None:intergenic	30.0%
TTTGTGGAGAATGAATTGAA+TGG	-	chr7_2:43672618-43672637	Msa1058640:intron	30.0%
GAGAATGAATTGAATGGTTT+AGG	-	chr7_2:43672624-43672643	Msa1058640:intron	30.0%
TAGTAAGGAAATGAAAAAGG+TGG	+	chr7_2:43672853-43672872	None:intergenic	30.0%
AACTATGTTTAGATTGATGG+TGG	+	chr7_2:43673268-43673287	None:intergenic	30.0%
AAAGGATGCAATTACTTTGT+TGG	-	chr7_2:43673365-43673384	Msa1058640:intron	30.0%
AGCTTGTAAATTAGAAGCAA+TGG	-	chr7_2:43673579-43673598	Msa1058640:intron	30.0%
GTCACATAATATAGTACCTT+TGG	+	chr7_2:43673667-43673686	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	43672310	43675046	43672310	ID=Msa1058640;Name=Msa1058640
chr7_2	mRNA	43672310	43675046	43672310	ID=Msa1058640-mRNA-1;Parent=Msa1058640;Name=Msa1058640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.83\|0.71\|0.85\|0.83\|0.71\|7\|101\|248
chr7_2	exon	43672310	43672518	43672310	ID=Msa1058640-mRNA-1:exon:7876;Parent=Msa1058640-mRNA-1
chr7_2	exon	43672845	43672940	43672845	ID=Msa1058640-mRNA-1:exon:7875;Parent=Msa1058640-mRNA-1
chr7_2	exon	43673687	43673787	43673687	ID=Msa1058640-mRNA-1:exon:7874;Parent=Msa1058640-mRNA-1
chr7_2	exon	43673924	43674006	43673924	ID=Msa1058640-mRNA-1:exon:7873;Parent=Msa1058640-mRNA-1
chr7_2	exon	43674517	43674710	43674517	ID=Msa1058640-mRNA-1:exon:7872;Parent=Msa1058640-mRNA-1
chr7_2	exon	43674804	43674949	43674804	ID=Msa1058640-mRNA-1:exon:7871;Parent=Msa1058640-mRNA-1
chr7_2	exon	43675028	43675046	43675028	ID=Msa1058640-mRNA-1:exon:7870;Parent=Msa1058640-mRNA-1
chr7_2	CDS	43675028	43675046	43675028	ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1
chr7_2	CDS	43674804	43674949	43674804	ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1
chr7_2	CDS	43674517	43674710	43674517	ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1
chr7_2	CDS	43673924	43674006	43673924	ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1
chr7_2	CDS	43673687	43673787	43673687	ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1
chr7_2	CDS	43672845	43672940	43672845	ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1
chr7_2	CDS	43672411	43672518	43672411	ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1
chr7_2	three_prime_UTR	43672310	43672410	43672310	ID=Msa1058640-mRNA-1:three_prime_utr;Parent=Msa1058640-mRNA-1

Gene Sequence

>Msa1058640

ATGTGGCAGGGGTGGTTTGCTCATTCTTCCATCTCTCCTTTTCCCTCAACAACTACGACCTCCTCCCACCGCCGCCTCTCTTGTCCGATGCTCACCTCAACAATGACGTCAAAATCTTCTACAGAACATACGGTCGCGGTCCTACCAAAGTTCTCCTCATCATCGGATTGGCTTCCACGCATGAAGGATGGGGGTCCACAAATAAAAGCTTTAACTGGAACAAACGTACCTAACGATGAAGACGACGCCGTTTGGAGTGGTGAAGGTGATAATGAGGCCGGCGGTGGTATTGAAGTTTGCGCTTTTGATAATCGGGGCGTCGGTCGGAGCTTCGTGCCTATTAGAAAGTCCGATTACTCAACAAAGATCATGGCAAAGGATGCAATTACTTTGTTGGATCATTTAGGTTGGAAAAAGGCACATGTTTTTGGGCATTCAATGGGATCTATGATAGCTTGTAAATTAGAAGCAATGGTTCCTGATAGAGTTCTCTCCATGGCCTTGCTCAATGCAACAGGTGGTGGTTTTCAATGTTTTCCAAAGTTTGACCGACGAACAATTTCCATTGCTTACCGATTCTTGAAGGCAAAGAGTCCTGAACAAAGAGCTAAAGTTGACTTGGACACCCACTATTCACAAGAATATCTTGAGGAATATGTTGGAACCGTGAAGAGGAGAACCATATTGTATCAGGTACAGTACAAACTGAAAAGAAGCTTCAATTTAGGTTGTTGTCAATTGTCATGA

Protein sequence

>Msa1058640

MWQGWFAHSSISPFPSTTTTSSHRRLSCPMLTSTMTSKSSTEHTVAVLPKFSSSSDWLPRMKDGGPQIKALTGTNVPNDEDDAVWSGEGDNEAGGGIEVCAFDNRGVGRSFVPIRKSDYSTKIMAKDAITLLDHLGWKKAHVFGHSMGSMIACKLEAMVPDRVLSMALLNATGGGFQCFPKFDRRTISIAYRFLKAKSPEQRAKVDLDTHYSQEYLEEYVGTVKRRTILYQVQYKLKRSFNLGCCQLS*