Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058640 | XP_024630962.1 | 94.706 | 170 | 8 | 1 | 65 | 234 | 59 | 227 | 1.06e-112 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058640 | G7I3G4 | 94.706 | 170 | 8 | 1 | 65 | 234 | 59 | 227 | 3.57e-112 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075880 | Msa1058640 | 0.804366 | 2.236233e-49 | -8.615850e-47 |
| Msa0084380 | Msa1058640 | 0.811822 | 5.775677e-51 | -8.615850e-47 |
| Msa0625720 | Msa1058640 | 0.801584 | 8.403888e-49 | -8.615850e-47 |
| Msa0715470 | Msa1058640 | 0.802195 | 6.295776e-49 | -8.615850e-47 |
| Msa0731940 | Msa1058640 | 0.803016 | 4.262942e-49 | -8.615850e-47 |
| Msa0766630 | Msa1058640 | 0.818645 | 1.759249e-52 | -8.615850e-47 |
| Msa0767760 | Msa1058640 | 0.806197 | 9.247781e-50 | -8.615850e-47 |
| Msa0820850 | Msa1058640 | 0.808880 | 2.492006e-50 | -8.615850e-47 |
| Msa0840820 | Msa1058640 | 0.818021 | 2.435784e-52 | -8.615850e-47 |
| Msa0223410 | Msa1058640 | -0.801109 | 1.051179e-48 | -8.615850e-47 |
| Msa0433410 | Msa1058640 | -0.813687 | 2.255832e-51 | -8.615850e-47 |
| Msa0455760 | Msa1058640 | 0.803674 | 3.114154e-49 | -8.615850e-47 |
| Msa1014540 | Msa1058640 | 0.810274 | 1.250307e-50 | -8.615850e-47 |
| Msa1058640 | Msa1058650 | 0.937170 | 5.350779e-98 | -8.615850e-47 |
| Msa1058640 | Msa1058710 | 0.885824 | 5.826930e-72 | -8.615850e-47 |
| Msa1058640 | Msa1075650 | 0.803761 | 2.987808e-49 | -8.615850e-47 |
| Msa1058640 | Msa1082500 | 0.810902 | 9.150414e-51 | -8.615850e-47 |
| Msa1058640 | Msa1185980 | 0.808733 | 2.679500e-50 | -8.615850e-47 |
| Msa1058640 | Msa1233890 | 0.814326 | 1.630975e-51 | -8.615850e-47 |
| Msa1058640 | Msa1284680 | 0.809208 | 2.119824e-50 | -8.615850e-47 |
| Msa1058640 | Msa1306850 | 0.824810 | 6.598533e-54 | -8.615850e-47 |
| Msa1058640 | Msa1344130 | 0.801814 | 7.540120e-49 | -8.615850e-47 |
| Msa1058640 | Msa1390050 | 0.806657 | 7.396376e-50 | -8.615850e-47 |
| Msa1058640 | Msa1466540 | 0.809534 | 1.804510e-50 | -8.615850e-47 |
| Msa0302580 | Msa1058640 | -0.801400 | 9.164714e-49 | -8.615850e-47 |
| Msa0305190 | Msa1058640 | 0.807807 | 4.219291e-50 | -8.615850e-47 |
| Msa0306210 | Msa1058640 | -0.802730 | 4.883609e-49 | -8.615850e-47 |
| Msa0325550 | Msa1058640 | 0.809371 | 1.956319e-50 | -8.615850e-47 |
| Msa0340450 | Msa1058640 | 0.813427 | 2.573415e-51 | -8.615850e-47 |
| Msa0484780 | Msa1058640 | 0.801217 | 9.993175e-49 | -8.615850e-47 |
| Msa0529890 | Msa1058640 | 0.801296 | 9.628778e-49 | -8.615850e-47 |
| Msa0861130 | Msa1058640 | 0.813804 | 2.126421e-51 | -8.615850e-47 |
| Msa0969520 | Msa1058640 | 0.819216 | 1.304615e-52 | -8.615850e-47 |
| Msa0976670 | Msa1058640 | 0.807276 | 5.470863e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058640 | MtrunA17_Chr1g0146881 | 94.706 | 170 | 8 | 1 | 65 | 234 | 59 | 227 | 6.88e-116 | 337 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1058640 | AT5G53050.1 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.59e-76 | 234 |
| Msa1058640 | AT5G53050.6 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.74e-76 | 234 |
| Msa1058640 | AT5G53050.2 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.02e-75 | 235 |
| Msa1058640 | AT5G53050.3 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.02e-75 | 235 |
| Msa1058640 | AT5G53050.5 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 1.08e-75 | 233 |
| Msa1058640 | AT5G53050.4 | 70.000 | 170 | 47 | 2 | 65 | 234 | 50 | 215 | 5.58e-75 | 234 |
Find 81 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTTTGTTGGATCATTT+AGG | 0.249536 | 7_2:-43673959 | Msa1058640:CDS |
| CTGAAAAGAAGCTTCAATTT+AGG | 0.255528 | 7_2:-43672430 | Msa1058640:CDS |
| ATCCCTCCTCTTTGTTAAAC+TGG | 0.287597 | 7_2:+43672323 | None:intergenic |
| GGATCATTTAGGTTGGAAAA+AGG | 0.303157 | 7_2:-43673948 | Msa1058640:CDS |
| TCAACTTTAGCTCTTTGTTC+AGG | 0.360825 | 7_2:+43672867 | None:intergenic |
| ACGATGAAGACGACGCCGTT+TGG | 0.368982 | 7_2:-43674621 | Msa1058640:CDS |
| GAGTAATCGGACTTTCTAAT+AGG | 0.372313 | 7_2:+43674517 | None:intergenic |
| CCACAAATAAAAGCTTTAAC+TGG | 0.376314 | 7_2:-43674658 | Msa1058640:CDS |
| GTACTGTACCTGATACAATA+TGG | 0.402588 | 7_2:+43672456 | None:intergenic |
| GACTCTTTGCCTTCAAGAAT+CGG | 0.405184 | 7_2:+43672889 | None:intergenic |
| GTGAAAGATAAGAAAGATCT+TGG | 0.408538 | 7_2:-43672373 | Msa1058640:three_prime_UTR |
| CATTGCTTACCGATTCTTGA+AGG | 0.414174 | 7_2:-43672898 | Msa1058640:CDS |
| TTGCTCAATGCAACAGGTGG+TGG | 0.415046 | 7_2:-43673706 | Msa1058640:CDS |
| GAGGAGAACCATATTGTATC+AGG | 0.416982 | 7_2:-43672464 | Msa1058640:CDS |
| AAAGGATGCAATTACTTTGT+TGG | 0.418955 | 7_2:-43673969 | Msa1058640:CDS |
| TCTTTCTTATCTTTCACCTT+GGG | 0.419428 | 7_2:+43672379 | None:intergenic |
| AGAGAGGCGGCGGTGGGAGG+AGG | 0.421387 | 7_2:+43674888 | None:intergenic |
| CTGATGTGGCAGGGGTGGTT+TGG | 0.421704 | 7_2:-43675027 | Msa1058640:intron |
| GCCATGGAGAGAACTCTATC+AGG | 0.426456 | 7_2:+43673730 | None:intergenic |
| GGTACACCCGCTGATGTGGC+AGG | 0.434777 | 7_2:-43675037 | None:intergenic |
| ATGGCCTTGCTCAATGCAAC+AGG | 0.435885 | 7_2:-43673712 | Msa1058640:CDS |
| GTCGTAGTTGTTGAGGGAAA+AGG | 0.437031 | 7_2:+43674910 | None:intergenic |
| GGCTTCCACGCATGAAGGAT+GGG | 0.444335 | 7_2:-43674684 | Msa1058640:CDS |
| TGGAAGAACATACGAGTAAT+CGG | 0.447419 | 7_2:+43674504 | None:intergenic |
| CGTGCTTTACTTGTGAATAG+TGG | 0.457639 | 7_2:+43672835 | None:intergenic |
| TTGATAATCGGGGCGTCGGT+CGG | 0.461416 | 7_2:-43674549 | Msa1058640:CDS |
| TGTTGAGGGAAAAGGAGAGA+TGG | 0.464899 | 7_2:+43674918 | None:intergenic |
| ATCTTTCTTATCTTTCACCT+TGG | 0.466513 | 7_2:+43672378 | None:intergenic |
| CTTTGTTGGATCATTTAGGT+TGG | 0.470243 | 7_2:-43673955 | Msa1058640:CDS |
| GGAGGAGGTCGTAGTTGTTG+AGG | 0.482808 | 7_2:+43674903 | None:intergenic |
| TCGGACAAGAGAGGCGGCGG+TGG | 0.482815 | 7_2:+43674881 | None:intergenic |
| GTTTAACAAAGAGGAGGGAT+TGG | 0.488431 | 7_2:-43672320 | Msa1058640:three_prime_UTR |
| GAGGAGGTCGTAGTTGTTGA+GGG | 0.490009 | 7_2:+43674904 | None:intergenic |
| CAATATGGTTCTCCTCTTCA+CGG | 0.490112 | 7_2:+43672471 | None:intergenic |
| TGGCTTCCACGCATGAAGGA+TGG | 0.494938 | 7_2:-43674685 | Msa1058640:CDS |
| ATCACCTTCACCACTCCAAA+CGG | 0.505169 | 7_2:+43674606 | None:intergenic |
| ACGGCGTCGTCTTCATCGTT+AGG | 0.516498 | 7_2:+43674625 | None:intergenic |
| AGCTTGTAAATTAGAAGCAA+TGG | 0.522301 | 7_2:-43673755 | Msa1058640:CDS |
| ACAAAGAGCTAAAGTTGACT+TGG | 0.529062 | 7_2:-43672862 | Msa1058640:CDS |
| ACAAGAGAGGCGGCGGTGGG+AGG | 0.530471 | 7_2:+43674885 | None:intergenic |
| ACCGATGATGAGGAGAACTT+TGG | 0.530722 | 7_2:+43674802 | None:intergenic |
| GAATATCTTGAGGAATATGT+TGG | 0.532265 | 7_2:-43672496 | Msa1058640:CDS |
| GGTGATAATGAGGCCGGCGG+TGG | 0.532443 | 7_2:-43674589 | Msa1058640:CDS |
| GCTTCCACGCATGAAGGATG+GGG | 0.533159 | 7_2:-43674683 | Msa1058640:CDS |
| TGTTGCATTGAGCAAGGCCA+TGG | 0.536559 | 7_2:+43673714 | None:intergenic |
| ACCCGCTGATGTGGCAGGGG+TGG | 0.536654 | 7_2:-43675032 | None:intergenic |
| CGGACAAGAGAGGCGGCGGT+GGG | 0.544804 | 7_2:+43674882 | None:intergenic |
| TACACCCGCTGATGTGGCAG+GGG | 0.546954 | 7_2:-43675035 | None:intergenic |
| GTACACCCGCTGATGTGGCA+GGG | 0.560294 | 7_2:-43675036 | None:intergenic |
| TACCAGTTTAACAAAGAGGA+GGG | 0.568079 | 7_2:-43672325 | Msa1058640:three_prime_UTR |
| GGATTGGCTTCCACGCATGA+AGG | 0.568079 | 7_2:-43674689 | Msa1058640:CDS |
| AAAATCTTCTACAGAACATA+CGG | 0.569688 | 7_2:-43674836 | Msa1058640:CDS |
| GTCATTGTTGAGGTGAGCAT+CGG | 0.572893 | 7_2:+43674862 | None:intergenic |
| ACCAAAGTTCTCCTCATCAT+CGG | 0.577196 | 7_2:-43674803 | Msa1058640:intron |
| TCCTGATAGAGTTCTCTCCA+TGG | 0.577551 | 7_2:-43673731 | Msa1058640:CDS |
| GACGCCGTTTGGAGTGGTGA+AGG | 0.581907 | 7_2:-43674610 | Msa1058640:CDS |
| GGTGAAGGTGATAATGAGGC+CGG | 0.582350 | 7_2:-43674595 | Msa1058640:CDS |
| GCATCGGACAAGAGAGGCGG+CGG | 0.595044 | 7_2:+43674878 | None:intergenic |
| GTATTACCAGTTTAACAAAG+AGG | 0.598288 | 7_2:-43672329 | Msa1058640:three_prime_UTR |
| GTGCTTTACTTGTGAATAGT+GGG | 0.598972 | 7_2:+43672836 | None:intergenic |
| TGGGTGCAGAACAAAGATCA+TGG | 0.599647 | 7_2:-43673993 | Msa1058640:intron |
| GAAGACGACGCCGTTTGGAG+TGG | 0.608024 | 7_2:-43674616 | Msa1058640:CDS |
| TCTTGGAATCATGAAAGTCA+AGG | 0.609272 | 7_2:-43672356 | Msa1058640:three_prime_UTR |
| TGGAGGAGATACCGATGATG+AGG | 0.610151 | 7_2:+43674792 | None:intergenic |
| CAGAACAAAGATCATGGCAA+AGG | 0.612024 | 7_2:-43673987 | Msa1058640:CDS |
| TTACCAGTTTAACAAAGAGG+AGG | 0.617647 | 7_2:-43672326 | Msa1058640:three_prime_UTR |
| ATGATGAGGAGAACTTTGGT+AGG | 0.620209 | 7_2:+43674806 | None:intergenic |
| ACCACCTGTTGCATTGAGCA+AGG | 0.621860 | 7_2:+43673708 | None:intergenic |
| CTTCAAGAATCGGTAAGCAA+TGG | 0.628174 | 7_2:+43672899 | None:intergenic |
| GCAAACTTCAATACCACCGC+CGG | 0.628811 | 7_2:+43674576 | None:intergenic |
| TCACGTGCAGGAATATCTTG+AGG | 0.635000 | 7_2:-43672506 | Msa1058640:intron |
| TTCTACAGAACATACGGTCG+CGG | 0.635565 | 7_2:-43674830 | Msa1058640:CDS |
| CTTCCACGCATGAAGGATGG+GGG | 0.637881 | 7_2:-43674682 | Msa1058640:CDS |
| AGGTGAGCATCGGACAAGAG+AGG | 0.648563 | 7_2:+43674872 | None:intergenic |
| AATATGTTGGAACCGTGAAG+AGG | 0.650450 | 7_2:-43672483 | Msa1058640:CDS |
| GTCATGACTTGATATACCCA+AGG | 0.651402 | 7_2:-43672395 | Msa1058640:exon |
| GAGTGGTGAAGGTGATAATG+AGG | 0.666112 | 7_2:-43674599 | Msa1058640:CDS |
| AAGCAATGGAAATTGTTCGT+CGG | 0.679393 | 7_2:+43672913 | None:intergenic |
| TGAGCATCGGACAAGAGAGG+CGG | 0.682115 | 7_2:+43674875 | None:intergenic |
| GCCTTGCTCAATGCAACAGG+TGG | 0.684486 | 7_2:-43673709 | Msa1058640:CDS |
| GAAGGTGATAATGAGGCCGG+CGG | 0.694791 | 7_2:-43674592 | Msa1058640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGAAAAGTTAAAAAATT+GGG | + | chr7_2:43673459-43673478 | None:intergenic | 10.0% |
| !!! | TTTAAATTTTGCTAAATTTG+TGG | - | chr7_2:43672602-43672621 | Msa1058640:intron | 15.0% |
| !!! | TGAAATGAAATTTTGAATAT+TGG | - | chr7_2:43673298-43673317 | Msa1058640:intron | 15.0% |
| !! | GAATAGAAAAGTTAAAAAAT+TGG | + | chr7_2:43673460-43673479 | None:intergenic | 15.0% |
| !! | AAATGGTTTATTATAAGATT+TGG | - | chr7_2:43673491-43673510 | Msa1058640:intron | 15.0% |
| !!! | AATGTTTCGATTTTTTTTTA+CGG | - | chr7_2:43673705-43673724 | Msa1058640:CDS | 15.0% |
| !! | ATTAAATTTGTATTAAGCAT+TGG | + | chr7_2:43674247-43674266 | None:intergenic | 15.0% |
| !! | ATGCTTAATACAAATTTAAT+CGG | - | chr7_2:43674247-43674266 | Msa1058640:intron | 15.0% |
| !!! | TTTTAAAATCACTACTTTAA+TGG | + | chr7_2:43674604-43674623 | None:intergenic | 15.0% |
| !! | TTATAGTAAGGAAATGAAAA+AGG | + | chr7_2:43672856-43672875 | None:intergenic | 20.0% |
| !! | ATTTCCTTACTATAAAAATG+AGG | - | chr7_2:43672861-43672880 | Msa1058640:CDS | 20.0% |
| !!! | TTATTTTTGAATATGCCATA+AGG | - | chr7_2:43673042-43673061 | Msa1058640:intron | 20.0% |
| !!! | GTGTTTTTTATAAGCTATAT+TGG | - | chr7_2:43673064-43673083 | Msa1058640:intron | 20.0% |
| !! | TAAAACTATGTTTAGATTGA+TGG | + | chr7_2:43673271-43673290 | None:intergenic | 20.0% |
| !! | CTATTCAGTTTAAATTCAAA+TGG | - | chr7_2:43673474-43673493 | Msa1058640:intron | 20.0% |
| !!! | GTTTATTATAAGATTTGGTT+AGG | - | chr7_2:43673496-43673515 | Msa1058640:intron | 20.0% |
| !! | AATTATGTTTGTATTGAAAC+AGG | - | chr7_2:43673547-43673566 | Msa1058640:intron | 20.0% |
| !!! | AATTTCTTACTACTGATTTT+AGG | - | chr7_2:43674046-43674065 | Msa1058640:intron | 20.0% |
| !! | TGCAATTAGATATATAATGT+TGG | - | chr7_2:43674278-43674297 | Msa1058640:intron | 20.0% |
| !! | TTAAAAAATTGAATCACTCA+AGG | - | chr7_2:43674618-43674637 | Msa1058640:CDS | 20.0% |
| !!! | TATTAACATTAAGTTGAAGA+AGG | - | chr7_2:43674690-43674709 | Msa1058640:CDS | 20.0% |
| ! | AAAATCTTCTACAGAACATA+CGG | - | chr7_2:43672498-43672517 | Msa1058640:CDS | 25.0% |
| !!! | ATGACCTCATTTTTATAGTA+AGG | + | chr7_2:43672868-43672887 | None:intergenic | 25.0% |
| ! | AGCTTATAAAAAACACCTTA+TGG | + | chr7_2:43673060-43673079 | None:intergenic | 25.0% |
| !!! | TGTTAGAAGTCATTTGATTT+TGG | - | chr7_2:43673186-43673205 | Msa1058640:intron | 25.0% |
| !! | TTTTGAATATTGGTGAATGA+TGG | - | chr7_2:43673308-43673327 | Msa1058640:intron | 25.0% |
| ! | TTTGAATATTGGTGAATGAT+GGG | - | chr7_2:43673309-43673328 | Msa1058640:intron | 25.0% |
| ! | ATTACTTTGTTGGATCATTT+AGG | - | chr7_2:43673375-43673394 | Msa1058640:intron | 25.0% |
| ! | CATTTCACAGATTTATACAA+GGG | + | chr7_2:43673689-43673708 | None:intergenic | 25.0% |
| ! | ACATTTCACAGATTTATACA+AGG | + | chr7_2:43673690-43673709 | None:intergenic | 25.0% |
| ! | TAATATAGAAGAGAAAGTCA+CGG | - | chr7_2:43673913-43673932 | Msa1058640:intron | 25.0% |
| ! | TTTAATTACAAACGTAGTTC+AGG | - | chr7_2:43673995-43674014 | Msa1058640:intron | 25.0% |
| ! | AATGGTAGTTTAATATAGCT+GGG | + | chr7_2:43674586-43674605 | None:intergenic | 25.0% |
| ! | TAATGGTAGTTTAATATAGC+TGG | + | chr7_2:43674587-43674606 | None:intergenic | 25.0% |
| ! | GTATATGATATAAAAGAGTC+TGG | - | chr7_2:43674648-43674667 | Msa1058640:CDS | 25.0% |
| !! | AAATTTTATATATCACGTGC+AGG | - | chr7_2:43674816-43674835 | Msa1058640:CDS | 25.0% |
| TTTGGTAAATTCACGTGATA+AGG | - | chr7_2:43672325-43672344 | Msa1058640:three_prime_UTR | 30.0% | |
| TTGGTAAATTCACGTGATAA+GGG | - | chr7_2:43672326-43672345 | Msa1058640:three_prime_UTR | 30.0% | |
| ATGAAGATGAAGAAGATGAA+TGG | + | chr7_2:43672565-43672584 | None:intergenic | 30.0% | |
| TTTGTGGAGAATGAATTGAA+TGG | - | chr7_2:43672618-43672637 | Msa1058640:intron | 30.0% | |
| GAGAATGAATTGAATGGTTT+AGG | - | chr7_2:43672624-43672643 | Msa1058640:intron | 30.0% | |
| ! | TGAATTGAATGGTTTAGGAT+TGG | - | chr7_2:43672629-43672648 | Msa1058640:intron | 30.0% |
| !! | CCAGTTAAAGCTTTTATTTG+TGG | + | chr7_2:43672679-43672698 | None:intergenic | 30.0% |
| ! | CCACAAATAAAAGCTTTAAC+TGG | - | chr7_2:43672676-43672695 | Msa1058640:intron | 30.0% |
| !! | AAGTTTGCGCTTTTGATAAT+CGG | - | chr7_2:43672773-43672792 | Msa1058640:intron | 30.0% |
| TAGTAAGGAAATGAAAAAGG+TGG | + | chr7_2:43672853-43672872 | None:intergenic | 30.0% | |
| ! | ACTATGTTTAGATTGATGGT+GGG | + | chr7_2:43673267-43673286 | None:intergenic | 30.0% |
| AACTATGTTTAGATTGATGG+TGG | + | chr7_2:43673268-43673287 | None:intergenic | 30.0% | |
| AAAGGATGCAATTACTTTGT+TGG | - | chr7_2:43673365-43673384 | Msa1058640:intron | 30.0% | |
| AGCTTGTAAATTAGAAGCAA+TGG | - | chr7_2:43673579-43673598 | Msa1058640:intron | 30.0% | |
| ! | TGGTTTTCAATGTTTTCCAA+AGG | - | chr7_2:43673648-43673667 | Msa1058640:intron | 30.0% |
| GTCACATAATATAGTACCTT+TGG | + | chr7_2:43673667-43673686 | None:intergenic | 30.0% | |
| GCTAGTTAACTAACTACATT+GGG | - | chr7_2:43673768-43673787 | Msa1058640:CDS | 30.0% | |
| TAACTAACTACATTGGGAAT+TGG | - | chr7_2:43673774-43673793 | Msa1058640:intron | 30.0% | |
| AACTAACTACATTGGGAATT+GGG | - | chr7_2:43673775-43673794 | Msa1058640:intron | 30.0% | |
| CTAAATTTCTCCTAAAGGTT+TGG | + | chr7_2:43674112-43674131 | None:intergenic | 30.0% | |
| CTCAACTAAATTTCTCCTAA+AGG | + | chr7_2:43674117-43674136 | None:intergenic | 30.0% | |
| GGTTTCCTATGAACTATTAT+CGG | - | chr7_2:43674329-43674348 | Msa1058640:intron | 30.0% | |
| TAGAACAAGAACCTCTTATA+AGG | + | chr7_2:43674386-43674405 | None:intergenic | 30.0% | |
| ATGGTAGTTTAATATAGCTG+GGG | + | chr7_2:43674585-43674604 | None:intergenic | 30.0% | |
| !!! | TATCTTGTTTTTCCAGTCTT+GGG | - | chr7_2:43674714-43674733 | Msa1058640:intron | 30.0% |
| GCACATTAACACAAATTTCT+AGG | + | chr7_2:43674771-43674790 | None:intergenic | 30.0% | |
| TGTGTTAATGTGCTATCTTT+AGG | - | chr7_2:43674778-43674797 | Msa1058640:intron | 30.0% | |
| GAATATCTTGAGGAATATGT+TGG | - | chr7_2:43674838-43674857 | Msa1058640:CDS | 30.0% | |
| CTGAAAAGAAGCTTCAATTT+AGG | - | chr7_2:43674904-43674923 | Msa1058640:CDS | 30.0% | |
| TCTTTCTTATCTTTCACCTT+GGG | + | chr7_2:43674958-43674977 | None:intergenic | 30.0% | |
| ATCTTTCTTATCTTTCACCT+TGG | + | chr7_2:43674959-43674978 | None:intergenic | 30.0% | |
| GTGAAAGATAAGAAAGATCT+TGG | - | chr7_2:43674961-43674980 | Msa1058640:intron | 30.0% | |
| GTATTACCAGTTTAACAAAG+AGG | - | chr7_2:43675005-43675024 | Msa1058640:intron | 30.0% | |
| TGGTAAATTCACGTGATAAG+GGG | - | chr7_2:43672327-43672346 | Msa1058640:three_prime_UTR | 35.0% | |
| !! | AGATTTTGACGTCATTGTTG+AGG | + | chr7_2:43672485-43672504 | None:intergenic | 35.0% |
| AAGATGAAGAAGATGAATGG+AGG | + | chr7_2:43672562-43672581 | None:intergenic | 35.0% | |
| !! | AGTTTGCGCTTTTGATAATC+GGG | - | chr7_2:43672774-43672793 | Msa1058640:intron | 35.0% |
| GAGTAATCGGACTTTCTAAT+AGG | + | chr7_2:43672820-43672839 | None:intergenic | 35.0% | |
| TGGAAGAACATACGAGTAAT+CGG | + | chr7_2:43672833-43672852 | None:intergenic | 35.0% | |
| CTACGAAGTTCCAATGATTT+AGG | - | chr7_2:43672915-43672934 | Msa1058640:CDS | 35.0% | |
| CCAAACATGTCCTAAATCAT+TGG | + | chr7_2:43672928-43672947 | None:intergenic | 35.0% | |
| ! | CCAATGATTTAGGACATGTT+TGG | - | chr7_2:43672925-43672944 | Msa1058640:intron | 35.0% |
| ! | TGAATGATGGGAATGATTGT+TGG | - | chr7_2:43673321-43673340 | Msa1058640:intron | 35.0% |
| ! | GAATGATGGGAATGATTGTT+GGG | - | chr7_2:43673322-43673341 | Msa1058640:intron | 35.0% |
| CTTTGTTGGATCATTTAGGT+TGG | - | chr7_2:43673379-43673398 | Msa1058640:intron | 35.0% | |
| !! | GGATCATTTAGGTTGGAAAA+AGG | - | chr7_2:43673386-43673405 | Msa1058640:intron | 35.0% |
| !! | TGGAAAAAGGCACATGTTTT+TGG | - | chr7_2:43673399-43673418 | Msa1058640:intron | 35.0% |
| !! | GGAAAAAGGCACATGTTTTT+GGG | - | chr7_2:43673400-43673419 | Msa1058640:intron | 35.0% |
| !!! | ACATGTTTTTGGGCATTCAA+TGG | - | chr7_2:43673410-43673429 | Msa1058640:intron | 35.0% |
| !!! | CATGTTTTTGGGCATTCAAT+GGG | - | chr7_2:43673411-43673430 | Msa1058640:intron | 35.0% |
| ! | CGTTATGTGATTAGAAGCAT+TGG | - | chr7_2:43673728-43673747 | Msa1058640:CDS | 35.0% |
| CGCTAGTTAACTAACTACAT+TGG | - | chr7_2:43673767-43673786 | Msa1058640:CDS | 35.0% | |
| GGAGTTGCATACATAACAAA+TGG | - | chr7_2:43674023-43674042 | Msa1058640:intron | 35.0% | |
| !! | TGATTTTAGGTCATCCTTGA+GGG | - | chr7_2:43674059-43674078 | Msa1058640:intron | 35.0% |
| AGGTTTGGATGATCGATAAT+TGG | + | chr7_2:43674097-43674116 | None:intergenic | 35.0% | |
| TATCGATCATCCAAACCTTT+AGG | - | chr7_2:43674099-43674118 | Msa1058640:intron | 35.0% | |
| ATCTGTTTGACACATGTACA+TGG | - | chr7_2:43674308-43674327 | Msa1058640:intron | 35.0% | |
| AAAGGCCGATAATAGTTCAT+AGG | + | chr7_2:43674337-43674356 | None:intergenic | 35.0% | |
| AAAACTCCAAACTAGTGCAA+AGG | + | chr7_2:43674355-43674374 | None:intergenic | 35.0% | |
| AAGCAATGGAAATTGTTCGT+CGG | + | chr7_2:43674424-43674443 | None:intergenic | 35.0% | |
| !! | TCAACTTTAGCTCTTTGTTC+AGG | + | chr7_2:43674470-43674489 | None:intergenic | 35.0% |
| ACAAAGAGCTAAAGTTGACT+TGG | - | chr7_2:43674472-43674491 | Msa1058640:intron | 35.0% | |
| GTGCTTTACTTGTGAATAGT+GGG | + | chr7_2:43674501-43674520 | None:intergenic | 35.0% | |
| !!! | CTATCTTGTTTTTCCAGTCT+TGG | - | chr7_2:43674713-43674732 | Msa1058640:intron | 35.0% |
| GTACTGTACCTGATACAATA+TGG | + | chr7_2:43674881-43674900 | None:intergenic | 35.0% | |
| TCTTGGAATCATGAAAGTCA+AGG | - | chr7_2:43674978-43674997 | Msa1058640:intron | 35.0% | |
| TTACCAGTTTAACAAAGAGG+AGG | - | chr7_2:43675008-43675027 | Msa1058640:intron | 35.0% | |
| TACCAGTTTAACAAAGAGGA+GGG | - | chr7_2:43675009-43675028 | Msa1058640:intron | 35.0% | |
| AGAAGATCAAGTGGTTGTGA+AGG | + | chr7_2:43672367-43672386 | None:intergenic | 40.0% | |
| AGAAAGAGGAGAAGATCAAG+TGG | + | chr7_2:43672376-43672395 | None:intergenic | 40.0% | |
| GAGCTTAGAGAGATAGAAAG+AGG | + | chr7_2:43672390-43672409 | None:intergenic | 40.0% | |
| ATGATGAGGAGAACTTTGGT+AGG | + | chr7_2:43672531-43672550 | None:intergenic | 40.0% | |
| ACCAAAGTTCTCCTCATCAT+CGG | - | chr7_2:43672531-43672550 | Msa1058640:intron | 40.0% | |
| !! | GTTTGCGCTTTTGATAATCG+GGG | - | chr7_2:43672775-43672794 | Msa1058640:intron | 40.0% |
| ! | ATTTTGTTGAAGCCACAGTG+TGG | + | chr7_2:43673218-43673237 | None:intergenic | 40.0% |
| !! | TGGTGGGTTTAGCAAAATCA+CGG | + | chr7_2:43673251-43673270 | None:intergenic | 40.0% |
| CAGAACAAAGATCATGGCAA+AGG | - | chr7_2:43673347-43673366 | Msa1058640:intron | 40.0% | |
| ACTACATTGGGAATTGGGAT+TGG | - | chr7_2:43673780-43673799 | Msa1058640:intron | 40.0% | |
| CTACATTGGGAATTGGGATT+GGG | - | chr7_2:43673781-43673800 | Msa1058640:intron | 40.0% | |
| AGAGATAAGTGACAGAGAAG+TGG | - | chr7_2:43673861-43673880 | Msa1058640:intron | 40.0% | |
| ACAAACGTAGTTCAGGATAG+TGG | - | chr7_2:43674002-43674021 | Msa1058640:intron | 40.0% | |
| !! | CTGATTTTAGGTCATCCTTG+AGG | - | chr7_2:43674058-43674077 | Msa1058640:intron | 40.0% |
| !! | ACTAGTTTGGAGTTTTCCTC+CGG | - | chr7_2:43674359-43674378 | Msa1058640:intron | 40.0% |
| CAAGAACCTCTTATAAGGAC+CGG | + | chr7_2:43674381-43674400 | None:intergenic | 40.0% | |
| CTTCAAGAATCGGTAAGCAA+TGG | + | chr7_2:43674438-43674457 | None:intergenic | 40.0% | |
| !! | CATTGCTTACCGATTCTTGA+AGG | - | chr7_2:43674436-43674455 | Msa1058640:intron | 40.0% |
| GACTCTTTGCCTTCAAGAAT+CGG | + | chr7_2:43674448-43674467 | None:intergenic | 40.0% | |
| CGTGCTTTACTTGTGAATAG+TGG | + | chr7_2:43674502-43674521 | None:intergenic | 40.0% | |
| TCACAAGTAAAGCACGTTCT+TGG | - | chr7_2:43674506-43674525 | Msa1058640:intron | 40.0% | |
| TTTAATATAGCTGGGGAGAG+GGG | + | chr7_2:43674578-43674597 | None:intergenic | 40.0% | |
| GTTTAATATAGCTGGGGAGA+GGG | + | chr7_2:43674579-43674598 | None:intergenic | 40.0% | |
| AGTTTAATATAGCTGGGGAG+AGG | + | chr7_2:43674580-43674599 | None:intergenic | 40.0% | |
| AATATGTTGGAACCGTGAAG+AGG | - | chr7_2:43674851-43674870 | Msa1058640:CDS | 40.0% | |
| CAATATGGTTCTCCTCTTCA+CGG | + | chr7_2:43674866-43674885 | None:intergenic | 40.0% | |
| GAGGAGAACCATATTGTATC+AGG | - | chr7_2:43674870-43674889 | Msa1058640:CDS | 40.0% | |
| GTCATGACTTGATATACCCA+AGG | - | chr7_2:43674939-43674958 | Msa1058640:intron | 40.0% | |
| ATCCCTCCTCTTTGTTAAAC+TGG | + | chr7_2:43675014-43675033 | None:intergenic | 40.0% | |
| GTTTAACAAAGAGGAGGGAT+TGG | - | chr7_2:43675014-43675033 | Msa1058640:intron | 40.0% | |
| TCACGTGATAAGGGGTAGTT+TGG | - | chr7_2:43672335-43672354 | Msa1058640:three_prime_UTR | 45.0% | |
| TGTTGAGGGAAAAGGAGAGA+TGG | + | chr7_2:43672419-43672438 | None:intergenic | 45.0% | |
| GTCGTAGTTGTTGAGGGAAA+AGG | + | chr7_2:43672427-43672446 | None:intergenic | 45.0% | |
| GTCATTGTTGAGGTGAGCAT+CGG | + | chr7_2:43672475-43672494 | None:intergenic | 45.0% | |
| TTCTACAGAACATACGGTCG+CGG | - | chr7_2:43672504-43672523 | Msa1058640:intron | 45.0% | |
| ACCGATGATGAGGAGAACTT+TGG | + | chr7_2:43672535-43672554 | None:intergenic | 45.0% | |
| ATCACCTTCACCACTCCAAA+CGG | + | chr7_2:43672731-43672750 | None:intergenic | 45.0% | |
| ! | GAGTGGTGAAGGTGATAATG+AGG | - | chr7_2:43672735-43672754 | Msa1058640:intron | 45.0% |
| ! | TTTTGGCAAAAGCCACACTG+TGG | - | chr7_2:43673203-43673222 | Msa1058640:intron | 45.0% |
| TGGGTGCAGAACAAAGATCA+TGG | - | chr7_2:43673341-43673360 | Msa1058640:intron | 45.0% | |
| TCCTGATAGAGTTCTCTCCA+TGG | - | chr7_2:43673603-43673622 | Msa1058640:intron | 45.0% | |
| ATTGGGATTGGGTGTCTTTG+TGG | - | chr7_2:43673792-43673811 | Msa1058640:intron | 45.0% | |
| AGTGACAGAGAAGTGGTAGT+TGG | - | chr7_2:43673868-43673887 | Msa1058640:intron | 45.0% | |
| GTGACAGAGAAGTGGTAGTT+GGG | - | chr7_2:43673869-43673888 | Msa1058640:intron | 45.0% | |
| !! | TTTTAGGTCATCCTTGAGGG+TGG | - | chr7_2:43674062-43674081 | Msa1058640:intron | 45.0% |
| TATCGGCCTTTGCACTAGTT+TGG | - | chr7_2:43674346-43674365 | Msa1058640:intron | 45.0% | |
| TTTCCTCCGGTCCTTATAAG+AGG | - | chr7_2:43674372-43674391 | Msa1058640:intron | 45.0% | |
| TTCGTCGGTCAAACTGCAAA+AGG | + | chr7_2:43674409-43674428 | None:intergenic | 45.0% | |
| TCACGTGCAGGAATATCTTG+AGG | - | chr7_2:43674828-43674847 | Msa1058640:CDS | 45.0% | |
| GAGGAGGTCGTAGTTGTTGA+GGG | + | chr7_2:43672433-43672452 | None:intergenic | 50.0% | |
| TGGAGGAGATACCGATGATG+AGG | + | chr7_2:43672545-43672564 | None:intergenic | 50.0% | |
| ! | GGTGAAGGTGATAATGAGGC+CGG | - | chr7_2:43672739-43672758 | Msa1058640:intron | 50.0% |
| GCAAACTTCAATACCACCGC+CGG | + | chr7_2:43672761-43672780 | None:intergenic | 50.0% | |
| !! | GCTTTTGATAATCGGGGCGT+CGG | - | chr7_2:43672781-43672800 | Msa1058640:intron | 50.0% |
| GCCATGGAGAGAACTCTATC+AGG | + | chr7_2:43673607-43673626 | None:intergenic | 50.0% | |
| TGTTGCATTGAGCAAGGCCA+TGG | + | chr7_2:43673623-43673642 | None:intergenic | 50.0% | |
| ! | ATGGCCTTGCTCAATGCAAC+AGG | - | chr7_2:43673622-43673641 | Msa1058640:intron | 50.0% |
| ACCACCTGTTGCATTGAGCA+AGG | + | chr7_2:43673629-43673648 | None:intergenic | 50.0% | |
| TTGCTCAATGCAACAGGTGG+TGG | - | chr7_2:43673628-43673647 | Msa1058640:intron | 50.0% | |
| GGATTGGGTGTCTTTGTGGA+GGG | - | chr7_2:43673796-43673815 | Msa1058640:intron | 50.0% | |
| GCGATTCGTGACTTTGTGGA+GGG | + | chr7_2:43673946-43673965 | None:intergenic | 50.0% | |
| GATCGCGATTCGTGACTTTG+TGG | + | chr7_2:43673950-43673969 | None:intergenic | 50.0% | |
| CAAAGTCACGAATCGCGATC+CGG | - | chr7_2:43673950-43673969 | Msa1058640:CDS | 50.0% | |
| AAAGTCACGAATCGCGATCC+GGG | - | chr7_2:43673951-43673970 | Msa1058640:CDS | 50.0% | |
| GAACCTCTTATAAGGACCGG+AGG | + | chr7_2:43674378-43674397 | None:intergenic | 50.0% | |
| CTTCAGAGTAGACCCAAGAC+TGG | + | chr7_2:43674729-43674748 | None:intergenic | 50.0% | |
| GGAGGAGGTCGTAGTTGTTG+AGG | + | chr7_2:43672434-43672453 | None:intergenic | 55.0% | |
| !! | TGAGCATCGGACAAGAGAGG+CGG | + | chr7_2:43672462-43672481 | None:intergenic | 55.0% |
| !! | AGGTGAGCATCGGACAAGAG+AGG | + | chr7_2:43672465-43672484 | None:intergenic | 55.0% |
| !! | GGATTGGCTTCCACGCATGA+AGG | - | chr7_2:43672645-43672664 | Msa1058640:intron | 55.0% |
| TGGCTTCCACGCATGAAGGA+TGG | - | chr7_2:43672649-43672668 | Msa1058640:intron | 55.0% | |
| GGCTTCCACGCATGAAGGAT+GGG | - | chr7_2:43672650-43672669 | Msa1058640:intron | 55.0% | |
| GCTTCCACGCATGAAGGATG+GGG | - | chr7_2:43672651-43672670 | Msa1058640:intron | 55.0% | |
| CTTCCACGCATGAAGGATGG+GGG | - | chr7_2:43672652-43672671 | Msa1058640:intron | 55.0% | |
| ACGGCGTCGTCTTCATCGTT+AGG | + | chr7_2:43672712-43672731 | None:intergenic | 55.0% | |
| ACGATGAAGACGACGCCGTT+TGG | - | chr7_2:43672713-43672732 | Msa1058640:intron | 55.0% | |
| ! | GAAGGTGATAATGAGGCCGG+CGG | - | chr7_2:43672742-43672761 | Msa1058640:intron | 55.0% |
| !! | TTGATAATCGGGGCGTCGGT+CGG | - | chr7_2:43672785-43672804 | Msa1058640:intron | 55.0% |
| GCCTTGCTCAATGCAACAGG+TGG | - | chr7_2:43673625-43673644 | Msa1058640:intron | 55.0% | |
| GGGATTGGGTGTCTTTGTGG+AGG | - | chr7_2:43673795-43673814 | Msa1058640:intron | 55.0% | |
| CGCGATTCGTGACTTTGTGG+AGG | + | chr7_2:43673947-43673966 | None:intergenic | 55.0% | |
| TGTGACTAGCAAGCACCACC+CGG | + | chr7_2:43673972-43673991 | None:intergenic | 55.0% | |
| GGACTCAATTGCCACCCTCA+AGG | + | chr7_2:43674076-43674095 | None:intergenic | 55.0% | |
| ATAGCTGGGGAGAGGGGTTA+GGG | + | chr7_2:43674572-43674591 | None:intergenic | 55.0% | |
| TATAGCTGGGGAGAGGGGTT+AGG | + | chr7_2:43674573-43674592 | None:intergenic | 55.0% | |
| GAAGACGACGCCGTTTGGAG+TGG | - | chr7_2:43672718-43672737 | Msa1058640:intron | 60.0% | |
| ! | GACGCCGTTTGGAGTGGTGA+AGG | - | chr7_2:43672724-43672743 | Msa1058640:intron | 60.0% |
| GCATCGGACAAGAGAGGCGG+CGG | + | chr7_2:43672459-43672478 | None:intergenic | 65.0% | |
| GGACCCCCATCCTTCATGCG+TGG | + | chr7_2:43672658-43672677 | None:intergenic | 65.0% | |
| ! | GGTGATAATGAGGCCGGCGG+TGG | - | chr7_2:43672745-43672764 | Msa1058640:intron | 65.0% |
| GTCACGAATCGCGATCCGGG+TGG | - | chr7_2:43673954-43673973 | Msa1058640:CDS | 65.0% | |
| ACAAGAGAGGCGGCGGTGGG+AGG | + | chr7_2:43672452-43672471 | None:intergenic | 70.0% | |
| CGGACAAGAGAGGCGGCGGT+GGG | + | chr7_2:43672455-43672474 | None:intergenic | 70.0% | |
| TCGGACAAGAGAGGCGGCGG+TGG | + | chr7_2:43672456-43672475 | None:intergenic | 70.0% | |
| AGAGAGGCGGCGGTGGGAGG+AGG | + | chr7_2:43672449-43672468 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 43672310 | 43675046 | 43672310 | ID=Msa1058640;Name=Msa1058640 |
| chr7_2 | mRNA | 43672310 | 43675046 | 43672310 | ID=Msa1058640-mRNA-1;Parent=Msa1058640;Name=Msa1058640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.83|0.71|0.85|0.83|0.71|7|101|248 |
| chr7_2 | exon | 43672310 | 43672518 | 43672310 | ID=Msa1058640-mRNA-1:exon:7876;Parent=Msa1058640-mRNA-1 |
| chr7_2 | exon | 43672845 | 43672940 | 43672845 | ID=Msa1058640-mRNA-1:exon:7875;Parent=Msa1058640-mRNA-1 |
| chr7_2 | exon | 43673687 | 43673787 | 43673687 | ID=Msa1058640-mRNA-1:exon:7874;Parent=Msa1058640-mRNA-1 |
| chr7_2 | exon | 43673924 | 43674006 | 43673924 | ID=Msa1058640-mRNA-1:exon:7873;Parent=Msa1058640-mRNA-1 |
| chr7_2 | exon | 43674517 | 43674710 | 43674517 | ID=Msa1058640-mRNA-1:exon:7872;Parent=Msa1058640-mRNA-1 |
| chr7_2 | exon | 43674804 | 43674949 | 43674804 | ID=Msa1058640-mRNA-1:exon:7871;Parent=Msa1058640-mRNA-1 |
| chr7_2 | exon | 43675028 | 43675046 | 43675028 | ID=Msa1058640-mRNA-1:exon:7870;Parent=Msa1058640-mRNA-1 |
| chr7_2 | CDS | 43675028 | 43675046 | 43675028 | ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1 |
| chr7_2 | CDS | 43674804 | 43674949 | 43674804 | ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1 |
| chr7_2 | CDS | 43674517 | 43674710 | 43674517 | ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1 |
| chr7_2 | CDS | 43673924 | 43674006 | 43673924 | ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1 |
| chr7_2 | CDS | 43673687 | 43673787 | 43673687 | ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1 |
| chr7_2 | CDS | 43672845 | 43672940 | 43672845 | ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1 |
| chr7_2 | CDS | 43672411 | 43672518 | 43672411 | ID=Msa1058640-mRNA-1:cds;Parent=Msa1058640-mRNA-1 |
| chr7_2 | three_prime_UTR | 43672310 | 43672410 | 43672310 | ID=Msa1058640-mRNA-1:three_prime_utr;Parent=Msa1058640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
