AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1058710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1058710 MtrunA17_Chr1g0146881 94.706 170 8 1 58 227 59 227 1.92e-116 338
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1058710 AT5G53050.6 70.000 170 47 2 58 227 50 215 1.11e-76 234
Msa1058710 AT5G53050.1 70.000 170 47 2 58 227 50 215 1.20e-76 234
Msa1058710 AT5G53050.5 70.588 170 46 2 58 227 50 215 6.47e-76 234
Msa1058710 AT5G53050.2 70.000 170 47 2 58 227 50 215 6.93e-76 235
Msa1058710 AT5G53050.3 70.000 170 47 2 58 227 50 215 6.93e-76 235
Msa1058710 AT5G53050.4 70.588 170 46 2 58 227 50 215 3.23e-75 234

Find 76 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTACTTTGTTGGATCATTT+AGG 0.249536 7_2:+43763123 Msa1058710:CDS
CTGAAAAGAAGCTTCAATTT+AGG 0.255528 7_2:+43764652 Msa1058710:CDS
ATCCCTCCTCTTTGTTAAAC+TGG 0.287597 7_2:-43764759 None:intergenic
GGATCATTTAGGTTGGAAAA+AGG 0.303157 7_2:+43763134 Msa1058710:CDS
TCAACTTTAGCTCTTTGTTC+AGG 0.360825 7_2:-43764215 None:intergenic
ACGATGAAGACGACGCCGTT+TGG 0.368982 7_2:+43762461 Msa1058710:CDS
GAGTAATCGGACTTTCTAAT+AGG 0.372313 7_2:-43762565 None:intergenic
CCACAAATAAAAGCTTTAAC+TGG 0.376314 7_2:+43762424 Msa1058710:CDS
GTACTGTACCTGATACAATA+TGG 0.402588 7_2:-43764626 None:intergenic
GACTCTTTGCCTTCAAGAAT+CGG 0.405184 7_2:-43764193 None:intergenic
GTGAAAGATAAGAAAGATCT+TGG 0.408538 7_2:+43764709 Msa1058710:three_prime_UTR
CATTGCTTACCGATTCTTGA+AGG 0.414174 7_2:+43764184 Msa1058710:CDS
TTGCTCAATGCAACAGGTGG+TGG 0.415046 7_2:+43763376 Msa1058710:CDS
GAGGAGAACCATATTGTATC+AGG 0.416982 7_2:+43764618 Msa1058710:CDS
AAAGGATGCAATTACTTTGT+TGG 0.418955 7_2:+43763113 Msa1058710:CDS
TCTTTCTTATCTTTCACCTT+GGG 0.419428 7_2:-43764703 None:intergenic
AGAGAGGCGGCGGTGGGAGG+AGG 0.421387 7_2:-43762194 None:intergenic
GCCATGGAGAGAACTCTATC+AGG 0.426456 7_2:-43763352 None:intergenic
ATGGCCTTGCTCAATGCAAC+AGG 0.435885 7_2:+43763370 Msa1058710:CDS
GTCGTAGTTGTTGAGGGAAA+AGG 0.437031 7_2:-43762172 None:intergenic
GGCTTCCACGCATGAAGGAT+GGG 0.444335 7_2:+43762398 Msa1058710:CDS
TGGAAGAACATACGAGTAAT+CGG 0.447419 7_2:-43762578 None:intergenic
CGTGCTTTACTTGTGAATAG+TGG 0.457639 7_2:-43764247 None:intergenic
TTGATAATCGGGGCGTCGGT+CGG 0.461416 7_2:+43762533 Msa1058710:CDS
TGTTGAGGGAAAAGGAGAGA+TGG 0.464899 7_2:-43762164 None:intergenic
ATCTTTCTTATCTTTCACCT+TGG 0.466513 7_2:-43764704 None:intergenic
CTTTGTTGGATCATTTAGGT+TGG 0.470243 7_2:+43763127 Msa1058710:CDS
GGAGGAGGTCGTAGTTGTTG+AGG 0.482808 7_2:-43762179 None:intergenic
TCGGACAAGAGAGGCGGCGG+TGG 0.482815 7_2:-43762201 None:intergenic
GTTTAACAAAGAGGAGGGAT+TGG 0.488431 7_2:+43764762 Msa1058710:three_prime_UTR
GAGGAGGTCGTAGTTGTTGA+GGG 0.490009 7_2:-43762178 None:intergenic
CAATATGGTTCTCCTCTTCA+CGG 0.490112 7_2:-43764611 None:intergenic
TGGCTTCCACGCATGAAGGA+TGG 0.494938 7_2:+43762397 Msa1058710:CDS
ATCACCTTCACCACTCCAAA+CGG 0.505169 7_2:-43762476 None:intergenic
ACGGCGTCGTCTTCATCGTT+AGG 0.516498 7_2:-43762457 None:intergenic
AGCTTGTAAATTAGAAGCAA+TGG 0.522301 7_2:+43763327 Msa1058710:CDS
ACAAAGAGCTAAAGTTGACT+TGG 0.529062 7_2:+43764220 Msa1058710:CDS
ACAAGAGAGGCGGCGGTGGG+AGG 0.530471 7_2:-43762197 None:intergenic
ACCGATGATGAGGAGAACTT+TGG 0.530722 7_2:-43762280 None:intergenic
GAATATCTTGAGGAATATGT+TGG 0.532265 7_2:+43764586 Msa1058710:CDS
GGTGATAATGAGGCCGGCGG+TGG 0.532443 7_2:+43762493 Msa1058710:CDS
GCTTCCACGCATGAAGGATG+GGG 0.533159 7_2:+43762399 Msa1058710:CDS
TGTTGCATTGAGCAAGGCCA+TGG 0.536559 7_2:-43763368 None:intergenic
CGGACAAGAGAGGCGGCGGT+GGG 0.544804 7_2:-43762200 None:intergenic
GGATTGGCTTCCACGCATGA+AGG 0.568079 7_2:+43762393 Msa1058710:intron
TACCAGTTTAACAAAGAGGA+GGG 0.568079 7_2:+43764757 Msa1058710:three_prime_UTR
AAAATCTTCTACAGAACATA+CGG 0.569688 7_2:+43762246 Msa1058710:CDS
GTCATTGTTGAGGTGAGCAT+CGG 0.572893 7_2:-43762220 None:intergenic
ACCAAAGTTCTCCTCATCAT+CGG 0.577196 7_2:+43762279 Msa1058710:CDS
TCCTGATAGAGTTCTCTCCA+TGG 0.577551 7_2:+43763351 Msa1058710:CDS
GACGCCGTTTGGAGTGGTGA+AGG 0.581907 7_2:+43762472 Msa1058710:CDS
GGTGAAGGTGATAATGAGGC+CGG 0.582350 7_2:+43762487 Msa1058710:CDS
GCATCGGACAAGAGAGGCGG+CGG 0.595044 7_2:-43762204 None:intergenic
GTATTACCAGTTTAACAAAG+AGG 0.598288 7_2:+43764753 Msa1058710:three_prime_UTR
GTGCTTTACTTGTGAATAGT+GGG 0.598972 7_2:-43764246 None:intergenic
TGGGTGCAGAACAAAGATCA+TGG 0.599647 7_2:+43763089 Msa1058710:intron
GAAGACGACGCCGTTTGGAG+TGG 0.608024 7_2:+43762466 Msa1058710:CDS
TCTTGGAATCATGAAAGTCA+AGG 0.609272 7_2:+43764726 Msa1058710:three_prime_UTR
TGGAGGAGATACCGATGATG+AGG 0.610151 7_2:-43762290 None:intergenic
CAGAACAAAGATCATGGCAA+AGG 0.612024 7_2:+43763095 Msa1058710:intron
TTACCAGTTTAACAAAGAGG+AGG 0.617647 7_2:+43764756 Msa1058710:three_prime_UTR
ATGATGAGGAGAACTTTGGT+AGG 0.620209 7_2:-43762276 None:intergenic
ACCACCTGTTGCATTGAGCA+AGG 0.621860 7_2:-43763374 None:intergenic
CTTCAAGAATCGGTAAGCAA+TGG 0.628174 7_2:-43764183 None:intergenic
GCAAACTTCAATACCACCGC+CGG 0.628811 7_2:-43762506 None:intergenic
TCACGTGCAGGAATATCTTG+AGG 0.635000 7_2:+43764576 Msa1058710:intron
TTCTACAGAACATACGGTCG+CGG 0.635565 7_2:+43762252 Msa1058710:CDS
CTTCCACGCATGAAGGATGG+GGG 0.637881 7_2:+43762400 Msa1058710:CDS
AGGTGAGCATCGGACAAGAG+AGG 0.648563 7_2:-43762210 None:intergenic
AATATGTTGGAACCGTGAAG+AGG 0.650450 7_2:+43764599 Msa1058710:CDS
GTCATGACTTGATATACCCA+AGG 0.651402 7_2:+43764687 Msa1058710:exon
GAGTGGTGAAGGTGATAATG+AGG 0.666112 7_2:+43762483 Msa1058710:CDS
AAGCAATGGAAATTGTTCGT+CGG 0.679393 7_2:-43764169 None:intergenic
TGAGCATCGGACAAGAGAGG+CGG 0.682115 7_2:-43762207 None:intergenic
GCCTTGCTCAATGCAACAGG+TGG 0.684486 7_2:+43763373 Msa1058710:CDS
GAAGGTGATAATGAGGCCGG+CGG 0.694791 7_2:+43762490 Msa1058710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGAAAAGTTAAAAAATT+GGG - chr7_2:43763207-43763226 None:intergenic 10.0%
!!! TTTAAATTTTGCTAAATTTG+TGG + chr7_2:43762350-43762369 Msa1058710:intron 15.0%
!!! TGAAATGAAATTTTGAATAT+TGG + chr7_2:43763046-43763065 Msa1058710:intron 15.0%
!! GAATAGAAAAGTTAAAAAAT+TGG - chr7_2:43763208-43763227 None:intergenic 15.0%
!! AAATGGTTTATTATAAGATT+TGG + chr7_2:43763239-43763258 Msa1058710:intron 15.0%
!!! AATGTTTCGATTTTTTTTTA+CGG + chr7_2:43763453-43763472 Msa1058710:intron 15.0%
!! ATTAAATTTGTATTAAGCAT+TGG - chr7_2:43763995-43764014 None:intergenic 15.0%
!! ATGCTTAATACAAATTTAAT+CGG + chr7_2:43763995-43764014 Msa1058710:intron 15.0%
!!! TTTTAAAATCACTACTTTAA+TGG - chr7_2:43764352-43764371 None:intergenic 15.0%
!! TTATAGTAAGGAAATGAAAA+AGG - chr7_2:43762604-43762623 None:intergenic 20.0%
!! ATTTCCTTACTATAAAAATG+AGG + chr7_2:43762609-43762628 Msa1058710:intron 20.0%
!!! TTATTTTTGAATATGCCATA+AGG + chr7_2:43762790-43762809 Msa1058710:intron 20.0%
!!! GTGTTTTTTATAAGCTATAT+TGG + chr7_2:43762812-43762831 Msa1058710:intron 20.0%
!! TAAAACTATGTTTAGATTGA+TGG - chr7_2:43763019-43763038 None:intergenic 20.0%
!! CTATTCAGTTTAAATTCAAA+TGG + chr7_2:43763222-43763241 Msa1058710:intron 20.0%
!!! GTTTATTATAAGATTTGGTT+AGG + chr7_2:43763244-43763263 Msa1058710:intron 20.0%
!! AATTATGTTTGTATTGAAAC+AGG + chr7_2:43763295-43763314 Msa1058710:intron 20.0%
!!! AATTTCTTACTACTGATTTT+AGG + chr7_2:43763794-43763813 Msa1058710:intron 20.0%
!! TGCAATTAGATATATAATGT+TGG + chr7_2:43764026-43764045 Msa1058710:intron 20.0%
!! TTAAAAAATTGAATCACTCA+AGG + chr7_2:43764366-43764385 Msa1058710:intron 20.0%
!!! TATTAACATTAAGTTGAAGA+AGG + chr7_2:43764438-43764457 Msa1058710:intron 20.0%
! AAAATCTTCTACAGAACATA+CGG + chr7_2:43762246-43762265 Msa1058710:CDS 25.0%
!!! ATGACCTCATTTTTATAGTA+AGG - chr7_2:43762616-43762635 None:intergenic 25.0%
! AGCTTATAAAAAACACCTTA+TGG - chr7_2:43762808-43762827 None:intergenic 25.0%
!!! TGTTAGAAGTCATTTGATTT+TGG + chr7_2:43762934-43762953 Msa1058710:intron 25.0%
!! TTTTGAATATTGGTGAATGA+TGG + chr7_2:43763056-43763075 Msa1058710:intron 25.0%
! TTTGAATATTGGTGAATGAT+GGG + chr7_2:43763057-43763076 Msa1058710:intron 25.0%
! ATTACTTTGTTGGATCATTT+AGG + chr7_2:43763123-43763142 Msa1058710:CDS 25.0%
! CATTTCACAGATTTATACAA+GGG - chr7_2:43763437-43763456 None:intergenic 25.0%
! ACATTTCACAGATTTATACA+AGG - chr7_2:43763438-43763457 None:intergenic 25.0%
! TAATATAGAAGAGAAAGTCA+CGG + chr7_2:43763661-43763680 Msa1058710:intron 25.0%
! TTTAATTACAAACGTAGTTC+AGG + chr7_2:43763743-43763762 Msa1058710:intron 25.0%
! AATGGTAGTTTAATATAGCT+GGG - chr7_2:43764334-43764353 None:intergenic 25.0%
! TAATGGTAGTTTAATATAGC+TGG - chr7_2:43764335-43764354 None:intergenic 25.0%
! GTATATGATATAAAAGAGTC+TGG + chr7_2:43764396-43764415 Msa1058710:intron 25.0%
!! AAATTTTATATATCACGTGC+AGG + chr7_2:43764564-43764583 Msa1058710:intron 25.0%
ATGAAGATGAAGAAGATGAA+TGG - chr7_2:43762313-43762332 None:intergenic 30.0%
TTTGTGGAGAATGAATTGAA+TGG + chr7_2:43762366-43762385 Msa1058710:intron 30.0%
GAGAATGAATTGAATGGTTT+AGG + chr7_2:43762372-43762391 Msa1058710:intron 30.0%
! TGAATTGAATGGTTTAGGAT+TGG + chr7_2:43762377-43762396 Msa1058710:intron 30.0%
!! CCAGTTAAAGCTTTTATTTG+TGG - chr7_2:43762427-43762446 None:intergenic 30.0%
! CCACAAATAAAAGCTTTAAC+TGG + chr7_2:43762424-43762443 Msa1058710:CDS 30.0%
!! AAGTTTGCGCTTTTGATAAT+CGG + chr7_2:43762521-43762540 Msa1058710:CDS 30.0%
TAGTAAGGAAATGAAAAAGG+TGG - chr7_2:43762601-43762620 None:intergenic 30.0%
! ACTATGTTTAGATTGATGGT+GGG - chr7_2:43763015-43763034 None:intergenic 30.0%
AACTATGTTTAGATTGATGG+TGG - chr7_2:43763016-43763035 None:intergenic 30.0%
AAAGGATGCAATTACTTTGT+TGG + chr7_2:43763113-43763132 Msa1058710:CDS 30.0%
AGCTTGTAAATTAGAAGCAA+TGG + chr7_2:43763327-43763346 Msa1058710:CDS 30.0%
! TGGTTTTCAATGTTTTCCAA+AGG + chr7_2:43763396-43763415 Msa1058710:CDS 30.0%
GTCACATAATATAGTACCTT+TGG - chr7_2:43763415-43763434 None:intergenic 30.0%
GCTAGTTAACTAACTACATT+GGG + chr7_2:43763516-43763535 Msa1058710:intron 30.0%
TAACTAACTACATTGGGAAT+TGG + chr7_2:43763522-43763541 Msa1058710:intron 30.0%
AACTAACTACATTGGGAATT+GGG + chr7_2:43763523-43763542 Msa1058710:intron 30.0%
CTAAATTTCTCCTAAAGGTT+TGG - chr7_2:43763860-43763879 None:intergenic 30.0%
CTCAACTAAATTTCTCCTAA+AGG - chr7_2:43763865-43763884 None:intergenic 30.0%
GGTTTCCTATGAACTATTAT+CGG + chr7_2:43764077-43764096 Msa1058710:intron 30.0%
TAGAACAAGAACCTCTTATA+AGG - chr7_2:43764134-43764153 None:intergenic 30.0%
ATGGTAGTTTAATATAGCTG+GGG - chr7_2:43764333-43764352 None:intergenic 30.0%
!!! TATCTTGTTTTTCCAGTCTT+GGG + chr7_2:43764462-43764481 Msa1058710:intron 30.0%
GCACATTAACACAAATTTCT+AGG - chr7_2:43764519-43764538 None:intergenic 30.0%
TGTGTTAATGTGCTATCTTT+AGG + chr7_2:43764526-43764545 Msa1058710:intron 30.0%
GAATATCTTGAGGAATATGT+TGG + chr7_2:43764586-43764605 Msa1058710:CDS 30.0%
CTGAAAAGAAGCTTCAATTT+AGG + chr7_2:43764652-43764671 Msa1058710:CDS 30.0%
TCTTTCTTATCTTTCACCTT+GGG - chr7_2:43764706-43764725 None:intergenic 30.0%
ATCTTTCTTATCTTTCACCT+TGG - chr7_2:43764707-43764726 None:intergenic 30.0%
GTGAAAGATAAGAAAGATCT+TGG + chr7_2:43764709-43764728 Msa1058710:three_prime_UTR 30.0%
GTATTACCAGTTTAACAAAG+AGG + chr7_2:43764753-43764772 Msa1058710:three_prime_UTR 30.0%
!! AGATTTTGACGTCATTGTTG+AGG - chr7_2:43762233-43762252 None:intergenic 35.0%
AAGATGAAGAAGATGAATGG+AGG - chr7_2:43762310-43762329 None:intergenic 35.0%
!! AGTTTGCGCTTTTGATAATC+GGG + chr7_2:43762522-43762541 Msa1058710:CDS 35.0%
GAGTAATCGGACTTTCTAAT+AGG - chr7_2:43762568-43762587 None:intergenic 35.0%
TGGAAGAACATACGAGTAAT+CGG - chr7_2:43762581-43762600 None:intergenic 35.0%
CTACGAAGTTCCAATGATTT+AGG + chr7_2:43762663-43762682 Msa1058710:intron 35.0%
CCAAACATGTCCTAAATCAT+TGG - chr7_2:43762676-43762695 None:intergenic 35.0%
! CCAATGATTTAGGACATGTT+TGG + chr7_2:43762673-43762692 Msa1058710:intron 35.0%
! TGAATGATGGGAATGATTGT+TGG + chr7_2:43763069-43763088 Msa1058710:intron 35.0%
! GAATGATGGGAATGATTGTT+GGG + chr7_2:43763070-43763089 Msa1058710:intron 35.0%
CTTTGTTGGATCATTTAGGT+TGG + chr7_2:43763127-43763146 Msa1058710:CDS 35.0%
!! GGATCATTTAGGTTGGAAAA+AGG + chr7_2:43763134-43763153 Msa1058710:CDS 35.0%
!! TGGAAAAAGGCACATGTTTT+TGG + chr7_2:43763147-43763166 Msa1058710:CDS 35.0%
!! GGAAAAAGGCACATGTTTTT+GGG + chr7_2:43763148-43763167 Msa1058710:CDS 35.0%
!!! ACATGTTTTTGGGCATTCAA+TGG + chr7_2:43763158-43763177 Msa1058710:CDS 35.0%
!!! CATGTTTTTGGGCATTCAAT+GGG + chr7_2:43763159-43763178 Msa1058710:CDS 35.0%
! CGTTATGTGATTAGAAGCAT+TGG + chr7_2:43763476-43763495 Msa1058710:intron 35.0%
CGCTAGTTAACTAACTACAT+TGG + chr7_2:43763515-43763534 Msa1058710:intron 35.0%
GGAGTTGCATACATAACAAA+TGG + chr7_2:43763771-43763790 Msa1058710:intron 35.0%
!! TGATTTTAGGTCATCCTTGA+GGG + chr7_2:43763807-43763826 Msa1058710:intron 35.0%
AGGTTTGGATGATCGATAAT+TGG - chr7_2:43763845-43763864 None:intergenic 35.0%
TATCGATCATCCAAACCTTT+AGG + chr7_2:43763847-43763866 Msa1058710:intron 35.0%
ATCTGTTTGACACATGTACA+TGG + chr7_2:43764056-43764075 Msa1058710:intron 35.0%
AAAGGCCGATAATAGTTCAT+AGG - chr7_2:43764085-43764104 None:intergenic 35.0%
AAAACTCCAAACTAGTGCAA+AGG - chr7_2:43764103-43764122 None:intergenic 35.0%
AAGCAATGGAAATTGTTCGT+CGG - chr7_2:43764172-43764191 None:intergenic 35.0%
!! TCAACTTTAGCTCTTTGTTC+AGG - chr7_2:43764218-43764237 None:intergenic 35.0%
ACAAAGAGCTAAAGTTGACT+TGG + chr7_2:43764220-43764239 Msa1058710:CDS 35.0%
GTGCTTTACTTGTGAATAGT+GGG - chr7_2:43764249-43764268 None:intergenic 35.0%
!!! CTATCTTGTTTTTCCAGTCT+TGG + chr7_2:43764461-43764480 Msa1058710:intron 35.0%
GTACTGTACCTGATACAATA+TGG - chr7_2:43764629-43764648 None:intergenic 35.0%
TCTTGGAATCATGAAAGTCA+AGG + chr7_2:43764726-43764745 Msa1058710:three_prime_UTR 35.0%
TTACCAGTTTAACAAAGAGG+AGG + chr7_2:43764756-43764775 Msa1058710:three_prime_UTR 35.0%
TACCAGTTTAACAAAGAGGA+GGG + chr7_2:43764757-43764776 Msa1058710:three_prime_UTR 35.0%
ATGATGAGGAGAACTTTGGT+AGG - chr7_2:43762279-43762298 None:intergenic 40.0%
ACCAAAGTTCTCCTCATCAT+CGG + chr7_2:43762279-43762298 Msa1058710:CDS 40.0%
!! GTTTGCGCTTTTGATAATCG+GGG + chr7_2:43762523-43762542 Msa1058710:CDS 40.0%
! ATTTTGTTGAAGCCACAGTG+TGG - chr7_2:43762966-43762985 None:intergenic 40.0%
!! TGGTGGGTTTAGCAAAATCA+CGG - chr7_2:43762999-43763018 None:intergenic 40.0%
CAGAACAAAGATCATGGCAA+AGG + chr7_2:43763095-43763114 Msa1058710:intron 40.0%
ACTACATTGGGAATTGGGAT+TGG + chr7_2:43763528-43763547 Msa1058710:intron 40.0%
CTACATTGGGAATTGGGATT+GGG + chr7_2:43763529-43763548 Msa1058710:intron 40.0%
AGAGATAAGTGACAGAGAAG+TGG + chr7_2:43763609-43763628 Msa1058710:intron 40.0%
ACAAACGTAGTTCAGGATAG+TGG + chr7_2:43763750-43763769 Msa1058710:intron 40.0%
!! CTGATTTTAGGTCATCCTTG+AGG + chr7_2:43763806-43763825 Msa1058710:intron 40.0%
!! ACTAGTTTGGAGTTTTCCTC+CGG + chr7_2:43764107-43764126 Msa1058710:intron 40.0%
CAAGAACCTCTTATAAGGAC+CGG - chr7_2:43764129-43764148 None:intergenic 40.0%
CTTCAAGAATCGGTAAGCAA+TGG - chr7_2:43764186-43764205 None:intergenic 40.0%
!! CATTGCTTACCGATTCTTGA+AGG + chr7_2:43764184-43764203 Msa1058710:CDS 40.0%
GACTCTTTGCCTTCAAGAAT+CGG - chr7_2:43764196-43764215 None:intergenic 40.0%
CGTGCTTTACTTGTGAATAG+TGG - chr7_2:43764250-43764269 None:intergenic 40.0%
TCACAAGTAAAGCACGTTCT+TGG + chr7_2:43764254-43764273 Msa1058710:intron 40.0%
TTTAATATAGCTGGGGAGAG+GGG - chr7_2:43764326-43764345 None:intergenic 40.0%
GTTTAATATAGCTGGGGAGA+GGG - chr7_2:43764327-43764346 None:intergenic 40.0%
AGTTTAATATAGCTGGGGAG+AGG - chr7_2:43764328-43764347 None:intergenic 40.0%
AATATGTTGGAACCGTGAAG+AGG + chr7_2:43764599-43764618 Msa1058710:CDS 40.0%
CAATATGGTTCTCCTCTTCA+CGG - chr7_2:43764614-43764633 None:intergenic 40.0%
GAGGAGAACCATATTGTATC+AGG + chr7_2:43764618-43764637 Msa1058710:CDS 40.0%
GTCATGACTTGATATACCCA+AGG + chr7_2:43764687-43764706 Msa1058710:exon 40.0%
ATCCCTCCTCTTTGTTAAAC+TGG - chr7_2:43764762-43764781 None:intergenic 40.0%
GTTTAACAAAGAGGAGGGAT+TGG + chr7_2:43764762-43764781 Msa1058710:three_prime_UTR 40.0%
TGTTGAGGGAAAAGGAGAGA+TGG - chr7_2:43762167-43762186 None:intergenic 45.0%
GTCGTAGTTGTTGAGGGAAA+AGG - chr7_2:43762175-43762194 None:intergenic 45.0%
GTCATTGTTGAGGTGAGCAT+CGG - chr7_2:43762223-43762242 None:intergenic 45.0%
TTCTACAGAACATACGGTCG+CGG + chr7_2:43762252-43762271 Msa1058710:CDS 45.0%
ACCGATGATGAGGAGAACTT+TGG - chr7_2:43762283-43762302 None:intergenic 45.0%
ATCACCTTCACCACTCCAAA+CGG - chr7_2:43762479-43762498 None:intergenic 45.0%
! GAGTGGTGAAGGTGATAATG+AGG + chr7_2:43762483-43762502 Msa1058710:CDS 45.0%
! TTTTGGCAAAAGCCACACTG+TGG + chr7_2:43762951-43762970 Msa1058710:intron 45.0%
TGGGTGCAGAACAAAGATCA+TGG + chr7_2:43763089-43763108 Msa1058710:intron 45.0%
TCCTGATAGAGTTCTCTCCA+TGG + chr7_2:43763351-43763370 Msa1058710:CDS 45.0%
ATTGGGATTGGGTGTCTTTG+TGG + chr7_2:43763540-43763559 Msa1058710:intron 45.0%
AGTGACAGAGAAGTGGTAGT+TGG + chr7_2:43763616-43763635 Msa1058710:intron 45.0%
GTGACAGAGAAGTGGTAGTT+GGG + chr7_2:43763617-43763636 Msa1058710:intron 45.0%
!! TTTTAGGTCATCCTTGAGGG+TGG + chr7_2:43763810-43763829 Msa1058710:intron 45.0%
TATCGGCCTTTGCACTAGTT+TGG + chr7_2:43764094-43764113 Msa1058710:intron 45.0%
TTTCCTCCGGTCCTTATAAG+AGG + chr7_2:43764120-43764139 Msa1058710:intron 45.0%
TTCGTCGGTCAAACTGCAAA+AGG - chr7_2:43764157-43764176 None:intergenic 45.0%
TCACGTGCAGGAATATCTTG+AGG + chr7_2:43764576-43764595 Msa1058710:intron 45.0%
GAGGAGGTCGTAGTTGTTGA+GGG - chr7_2:43762181-43762200 None:intergenic 50.0%
TGGAGGAGATACCGATGATG+AGG - chr7_2:43762293-43762312 None:intergenic 50.0%
! GGTGAAGGTGATAATGAGGC+CGG + chr7_2:43762487-43762506 Msa1058710:CDS 50.0%
GCAAACTTCAATACCACCGC+CGG - chr7_2:43762509-43762528 None:intergenic 50.0%
!! GCTTTTGATAATCGGGGCGT+CGG + chr7_2:43762529-43762548 Msa1058710:CDS 50.0%
GCCATGGAGAGAACTCTATC+AGG - chr7_2:43763355-43763374 None:intergenic 50.0%
TGTTGCATTGAGCAAGGCCA+TGG - chr7_2:43763371-43763390 None:intergenic 50.0%
! ATGGCCTTGCTCAATGCAAC+AGG + chr7_2:43763370-43763389 Msa1058710:CDS 50.0%
ACCACCTGTTGCATTGAGCA+AGG - chr7_2:43763377-43763396 None:intergenic 50.0%
TTGCTCAATGCAACAGGTGG+TGG + chr7_2:43763376-43763395 Msa1058710:CDS 50.0%
GGATTGGGTGTCTTTGTGGA+GGG + chr7_2:43763544-43763563 Msa1058710:intron 50.0%
GCGATTCGTGACTTTGTGGA+GGG - chr7_2:43763694-43763713 None:intergenic 50.0%
GATCGCGATTCGTGACTTTG+TGG - chr7_2:43763698-43763717 None:intergenic 50.0%
CAAAGTCACGAATCGCGATC+CGG + chr7_2:43763698-43763717 Msa1058710:intron 50.0%
AAAGTCACGAATCGCGATCC+GGG + chr7_2:43763699-43763718 Msa1058710:intron 50.0%
GAACCTCTTATAAGGACCGG+AGG - chr7_2:43764126-43764145 None:intergenic 50.0%
CTTCAGAGTAGACCCAAGAC+TGG - chr7_2:43764477-43764496 None:intergenic 50.0%
GGAGGAGGTCGTAGTTGTTG+AGG - chr7_2:43762182-43762201 None:intergenic 55.0%
!! TGAGCATCGGACAAGAGAGG+CGG - chr7_2:43762210-43762229 None:intergenic 55.0%
!! AGGTGAGCATCGGACAAGAG+AGG - chr7_2:43762213-43762232 None:intergenic 55.0%
!! GGATTGGCTTCCACGCATGA+AGG + chr7_2:43762393-43762412 Msa1058710:intron 55.0%
TGGCTTCCACGCATGAAGGA+TGG + chr7_2:43762397-43762416 Msa1058710:CDS 55.0%
GGCTTCCACGCATGAAGGAT+GGG + chr7_2:43762398-43762417 Msa1058710:CDS 55.0%
GCTTCCACGCATGAAGGATG+GGG + chr7_2:43762399-43762418 Msa1058710:CDS 55.0%
CTTCCACGCATGAAGGATGG+GGG + chr7_2:43762400-43762419 Msa1058710:CDS 55.0%
ACGGCGTCGTCTTCATCGTT+AGG - chr7_2:43762460-43762479 None:intergenic 55.0%
ACGATGAAGACGACGCCGTT+TGG + chr7_2:43762461-43762480 Msa1058710:CDS 55.0%
! GAAGGTGATAATGAGGCCGG+CGG + chr7_2:43762490-43762509 Msa1058710:CDS 55.0%
!! TTGATAATCGGGGCGTCGGT+CGG + chr7_2:43762533-43762552 Msa1058710:CDS 55.0%
GCCTTGCTCAATGCAACAGG+TGG + chr7_2:43763373-43763392 Msa1058710:CDS 55.0%
GGGATTGGGTGTCTTTGTGG+AGG + chr7_2:43763543-43763562 Msa1058710:intron 55.0%
CGCGATTCGTGACTTTGTGG+AGG - chr7_2:43763695-43763714 None:intergenic 55.0%
TGTGACTAGCAAGCACCACC+CGG - chr7_2:43763720-43763739 None:intergenic 55.0%
GGACTCAATTGCCACCCTCA+AGG - chr7_2:43763824-43763843 None:intergenic 55.0%
ATAGCTGGGGAGAGGGGTTA+GGG - chr7_2:43764320-43764339 None:intergenic 55.0%
TATAGCTGGGGAGAGGGGTT+AGG - chr7_2:43764321-43764340 None:intergenic 55.0%
GAAGACGACGCCGTTTGGAG+TGG + chr7_2:43762466-43762485 Msa1058710:CDS 60.0%
! GACGCCGTTTGGAGTGGTGA+AGG + chr7_2:43762472-43762491 Msa1058710:CDS 60.0%
GCATCGGACAAGAGAGGCGG+CGG - chr7_2:43762207-43762226 None:intergenic 65.0%
GGACCCCCATCCTTCATGCG+TGG - chr7_2:43762406-43762425 None:intergenic 65.0%
! GGTGATAATGAGGCCGGCGG+TGG + chr7_2:43762493-43762512 Msa1058710:CDS 65.0%
GTCACGAATCGCGATCCGGG+TGG + chr7_2:43763702-43763721 Msa1058710:intron 65.0%
ACAAGAGAGGCGGCGGTGGG+AGG - chr7_2:43762200-43762219 None:intergenic 70.0%
CGGACAAGAGAGGCGGCGGT+GGG - chr7_2:43762203-43762222 None:intergenic 70.0%
TCGGACAAGAGAGGCGGCGG+TGG - chr7_2:43762204-43762223 None:intergenic 70.0%
AGAGAGGCGGCGGTGGGAGG+AGG - chr7_2:43762197-43762216 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 43762157 43764794 43762157 ID=Msa1058710;Name=Msa1058710
chr7_2 mRNA 43762157 43764794 43762157 ID=Msa1058710-mRNA-1;Parent=Msa1058710;Name=Msa1058710-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.83|1|1|1|6|101|241
chr7_2 exon 43762157 43762300 43762157 ID=Msa1058710-mRNA-1:exon:7898;Parent=Msa1058710-mRNA-1
chr7_2 exon 43762394 43762587 43762394 ID=Msa1058710-mRNA-1:exon:7899;Parent=Msa1058710-mRNA-1
chr7_2 exon 43763098 43763180 43763098 ID=Msa1058710-mRNA-1:exon:7900;Parent=Msa1058710-mRNA-1
chr7_2 exon 43763317 43763417 43763317 ID=Msa1058710-mRNA-1:exon:7901;Parent=Msa1058710-mRNA-1
chr7_2 exon 43764164 43764259 43764164 ID=Msa1058710-mRNA-1:exon:7902;Parent=Msa1058710-mRNA-1
chr7_2 exon 43764586 43764794 43764586 ID=Msa1058710-mRNA-1:exon:7903;Parent=Msa1058710-mRNA-1
chr7_2 CDS 43762157 43762300 43762157 ID=Msa1058710-mRNA-1:cds;Parent=Msa1058710-mRNA-1
chr7_2 CDS 43762394 43762587 43762394 ID=Msa1058710-mRNA-1:cds;Parent=Msa1058710-mRNA-1
chr7_2 CDS 43763098 43763180 43763098 ID=Msa1058710-mRNA-1:cds;Parent=Msa1058710-mRNA-1
chr7_2 CDS 43763317 43763417 43763317 ID=Msa1058710-mRNA-1:cds;Parent=Msa1058710-mRNA-1
chr7_2 CDS 43764164 43764259 43764164 ID=Msa1058710-mRNA-1:cds;Parent=Msa1058710-mRNA-1
chr7_2 CDS 43764586 43764693 43764586 ID=Msa1058710-mRNA-1:cds;Parent=Msa1058710-mRNA-1
chr7_2 three_prime_UTR 43764694 43764794 43764694 ID=Msa1058710-mRNA-1:three_prime_utr;Parent=Msa1058710-mRNA-1
Gene Sequence

>Msa1058710

CATTCTTCCATCTCTCCTTTTCCCTCAACAACTACGACCTCCTCCCACCGCCGCCTCTCTTGTCCGATGCTCACCTCAACAATGACGTCAAAATCTTCTACAGAACATACGGTCGCGGTCCTACCAAAGTTCTCCTCATCATCGGATTGGCTTCCACGCATGAAGGATGGGGGTCCACAAATAAAAGCTTTAACTGGAACAAACGTACCTAACGATGAAGACGACGCCGTTTGGAGTGGTGAAGGTGATAATGAGGCCGGCGGTGGTATTGAAGTTTGCGCTTTTGATAATCGGGGCGTCGGTCGGAGCTTCGTGCCTATTAGAAAGTCCGATTACTCAACAAAGATCATGGCAAAGGATGCAATTACTTTGTTGGATCATTTAGGTTGGAAAAAGGCACATGTTTTTGGGCATTCAATGGGATCTATGATAGCTTGTAAATTAGAAGCAATGGTTCCTGATAGAGTTCTCTCCATGGCCTTGCTCAATGCAACAGGTGGTGGTTTTCAATGTTTTCCAAAGTTTGACCGACGAACAATTTCCATTGCTTACCGATTCTTGAAGGCAAAGAGTCCTGAACAAAGAGCTAAAGTTGACTTGGACACCCACTATTCACAAGAATATCTTGAGGAATATGTTGGAACCGTGAAGAGGAGAACCATATTGTATCAGGTACAGTACAAACTGAAAAGAAGCTTCAATTTAGGTTGTTGTCAATTGTCATGA

Protein sequence

>Msa1058710

HSSISPFPSTTTTSSHRRLSCPMLTSTMTSKSSTEHTVAVLPKFSSSSDWLPRMKDGGPQIKALTGTNVPNDEDDAVWSGEGDNEAGGGIEVCAFDNRGVGRSFVPIRKSDYSTKIMAKDAITLLDHLGWKKAHVFGHSMGSMIACKLEAMVPDRVLSMALLNATGGGFQCFPKFDRRTISIAYRFLKAKSPEQRAKVDLDTHYSQEYLEEYVGTVKRRTILYQVQYKLKRSFNLGCCQLS*