AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1001930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001930 MtrunA17_Chr6g0475931 87.398 246 20 3 1 240 1 241 8.09e-147 409
Msa1001930 MtrunA17_Chr5g0398561 50.000 166 79 2 59 223 59 221 2.79e-50 164
Msa1001930 MtrunA17_Chr3g0135231 29.365 126 87 1 89 214 86 209 9.32e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001930 AT4G25370.1 50.218 229 103 7 18 240 14 237 1.36e-67 209
Msa1001930 AT4G12060.1 56.213 169 67 4 68 233 76 240 9.04e-53 171

Find 70 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAAGAGAGAGAGGTTT+TGG 0.191792 6_4:-86177089 None:intergenic
AACGTGACTCATTTACTTCT+TGG 0.193512 6_4:+86181814 Msa1001930:CDS
CTCATTTACTTCTTGGAATT+TGG 0.207345 6_4:+86181821 Msa1001930:CDS
AAAACTCACTTTGAAGGATT+TGG 0.216298 6_4:-86177454 None:intergenic
TGCTGTTTCAGCAATTTCTT+TGG 0.256036 6_4:-86181905 None:intergenic
AGAGCTTCGGTTCCTACTTT+AGG 0.268153 6_4:-86179301 None:intergenic
CTCTCTCTAACTTCTCTCTT+TGG 0.296798 6_4:+86177221 Msa1001930:CDS
CGAAAGGTCTTGTCTGCTTT+AGG 0.302687 6_4:+86181865 Msa1001930:CDS
GCAAAATTCTTAAGAGCTAA+TGG 0.310722 6_4:+86180559 Msa1001930:CDS
ACCTCTCTCTCTTTCTTCAA+TGG 0.348304 6_4:+86177094 Msa1001930:exon
GGCATATGCAATGGCGGAGT+TGG 0.395307 6_4:+86179258 Msa1001930:CDS
AGTGTGTTGGTGTTGGTGTT+GGG 0.402794 6_4:-86177158 None:intergenic
AAGAAGAGAGTGTGAAGAAA+AGG 0.405397 6_4:-86177129 None:intergenic
TTAGAGAGAGAGTACATGAT+TGG 0.409045 6_4:-86177208 None:intergenic
CGGAAATTTGTGATGGAAAT+GGG 0.415514 6_4:-86177266 None:intergenic
AACAAGTCTCTTTCAACTAC+TGG 0.415856 6_4:+86177011 None:intergenic
GAGTGTGTTGGTGTTGGTGT+TGG 0.422140 6_4:-86177159 None:intergenic
AGTACATGATTGGTTGTTGT+TGG 0.445207 6_4:-86177198 None:intergenic
ACGGAAATTTGTGATGGAAA+TGG 0.453465 6_4:-86177267 None:intergenic
AGGCTAGTGGTGATATTGAT+TGG 0.457256 6_4:+86182238 Msa1001930:intron
GTGGTCGGCGAGGGCTATAA+AGG 0.469492 6_4:+86179237 Msa1001930:CDS
TGGTTTAAGGTGGTCGGCGA+GGG 0.471117 6_4:+86179228 Msa1001930:intron
TTTGTTTGGTTTAAGGTGGT+CGG 0.473407 6_4:+86179222 Msa1001930:intron
AGAGAGTGTGAAGAAAAGGT+TGG 0.483166 6_4:-86177125 None:intergenic
GTGTGAAGAAAAGGTTGGAA+TGG 0.488637 6_4:-86177120 None:intergenic
GAACAAACATTAGAGATACT+TGG 0.494086 6_4:+86180604 Msa1001930:CDS
CACTTCATAAAGCCCTCGAT+TGG 0.501232 6_4:+86180677 Msa1001930:CDS
TTCTTGGTTTCACCAGATTG+TGG 0.510521 6_4:-86177427 None:intergenic
AATCCCCATGAGAAGAGCTT+CGG 0.510732 6_4:-86179314 None:intergenic
TTTCCGTGCCACTTCAGAAA+CGG 0.513699 6_4:+86177283 Msa1001930:CDS
CAAACAACTTACGGGTCAGT+AGG 0.514536 6_4:-86177320 None:intergenic
GGAACCGAAGCTCTTCTCAT+GGG 0.514916 6_4:+86179310 Msa1001930:CDS
GGGTCAGTAGGGAGATTAAA+CGG 0.515224 6_4:-86177308 None:intergenic
TGAAGTGGTTCAGTCAAAGA+AGG 0.516251 6_4:-86180661 None:intergenic
AAACTTAAGTATCCTAAAGT+AGG 0.518801 6_4:+86179289 Msa1001930:CDS
CAAAGAAGGTACCACAGGGC+TGG 0.521979 6_4:-86180647 None:intergenic
AATTTGGTCACAAGAAGAAT+CGG 0.524470 6_4:+86181837 Msa1001930:CDS
CTTAATGAGACATCAAAGTC+AGG 0.528570 6_4:+86180703 Msa1001930:CDS
AAACGGCACCGTTTCTGAAG+TGG 0.536415 6_4:-86177291 None:intergenic
ACTTCATAAAGCCCTCGATT+GGG 0.536661 6_4:+86180678 Msa1001930:CDS
AACAAACATTAGAGATACTT+GGG 0.539478 6_4:+86180605 Msa1001930:CDS
TGATATAAAATGTAGGTGAA+GGG 0.544707 6_4:+86181785 Msa1001930:intron
TTATGTTTCTTGTAGGCTAG+TGG 0.544994 6_4:+86182225 Msa1001930:intron
GAATTTGTAGTGTGCACACT+TGG 0.545774 6_4:-86177039 None:intergenic
CTCATTAAGTGCCCAATCGA+GGG 0.546784 6_4:-86180689 None:intergenic
TCAGTCAAAGAAGGTACCAC+AGG 0.550965 6_4:-86180652 None:intergenic
GATATAAAATGTAGGTGAAG+GGG 0.556811 6_4:+86181786 Msa1001930:intron
AGAAGAATCGGCAGGTCGAA+AGG 0.557152 6_4:+86181849 Msa1001930:CDS
CAATGGCGGAGTTGGAAACA+AGG 0.558511 6_4:+86179266 Msa1001930:CDS
GCCATTGAAGAAAGAGAGAG+AGG 0.558904 6_4:-86177095 None:intergenic
CAATCGAGGGCTTTATGAAG+TGG 0.559203 6_4:-86180676 None:intergenic
TTTGACATGGAAATCTAAAG+AGG 0.570570 6_4:-86182339 None:intergenic
TTGTGATGGAAATGGGTCGT+TGG 0.574801 6_4:-86177259 None:intergenic
AGGAACCGAAGCTCTTCTCA+TGG 0.574875 6_4:+86179309 Msa1001930:CDS
AGAGAAGAGTGTGTTGGTGT+TGG 0.577106 6_4:-86177165 None:intergenic
TTGGTTTAAGGTGGTCGGCG+AGG 0.581133 6_4:+86179227 Msa1001930:intron
GGCTATAAAGGCATATGCAA+TGG 0.582460 6_4:+86179249 Msa1001930:CDS
AAACAACTTACGGGTCAGTA+GGG 0.586351 6_4:-86177319 None:intergenic
TGGTCACAAGAAGAATCGGC+AGG 0.599189 6_4:+86181841 Msa1001930:CDS
AGATACTTGGGAAATCTGAC+TGG 0.600934 6_4:+86180617 Msa1001930:CDS
TCTCATTAAGTGCCCAATCG+AGG 0.607236 6_4:-86180690 None:intergenic
TGAACGAGAGAAGAGTGTGT+TGG 0.616137 6_4:-86177171 None:intergenic
TTGACATGGAAATCTAAAGA+GGG 0.630237 6_4:-86182338 None:intergenic
GAACCGAAGCTCTTCTCATG+GGG 0.645463 6_4:+86179311 Msa1001930:CDS
AGTGGCACGGAAATTTGTGA+TGG 0.654680 6_4:-86177273 None:intergenic
GCACCGTTTCTGAAGTGGCA+CGG 0.660995 6_4:-86177286 None:intergenic
TATAAAGGCATATGCAATGG+CGG 0.665721 6_4:+86179252 Msa1001930:CDS
CAGTCAAAGAAGGTACCACA+GGG 0.673070 6_4:-86180651 None:intergenic
TAGTACAACAGTATTTGACA+TGG 0.683666 6_4:-86182352 None:intergenic
CTGGTACTACTCCAGCCCTG+TGG 0.699262 6_4:+86180636 Msa1001930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTGC+AGG + chr6_4:86177401-86177420 Msa1001930:intron 10.0%
!! TATTCTAATTTATATGTATT+CGG - chr6_4:86177846-86177865 None:intergenic 10.0%
!! TATTAATAAGAGATATATTT+GGG + chr6_4:86178099-86178118 Msa1001930:intron 10.0%
!! ACAATAAATTAATACAATTA+AGG - chr6_4:86179065-86179084 None:intergenic 10.0%
!!! TTATTTTATAAACACTTAAT+AGG + chr6_4:86179663-86179682 Msa1001930:intron 10.0%
!! ACATTATTAAATCTTAAAAT+TGG + chr6_4:86180288-86180307 Msa1001930:intron 10.0%
!! CATTATTAAATCTTAAAATT+GGG + chr6_4:86180289-86180308 Msa1001930:intron 10.0%
!!! TACTATATTTTAAACTTAAT+AGG - chr6_4:86181062-86181081 None:intergenic 10.0%
!! TATTGTAATGTTTAAAAAAT+CGG - chr6_4:86182159-86182178 None:intergenic 10.0%
!! TAGTTCAATATTTATGTAAT+TGG + chr6_4:86177507-86177526 Msa1001930:intron 15.0%
!! AGTTCAATATTTATGTAATT+GGG + chr6_4:86177508-86177527 Msa1001930:intron 15.0%
!! ATTAGAATAATTCATCTAAT+TGG + chr6_4:86177857-86177876 Msa1001930:intron 15.0%
!! CTAAATGTATTTATTCATAA+AGG - chr6_4:86178045-86178064 None:intergenic 15.0%
!! GTATTAATAAGAGATATATT+TGG + chr6_4:86178098-86178117 Msa1001930:intron 15.0%
!! ATTAATAAGAGATATATTTG+GGG + chr6_4:86178100-86178119 Msa1001930:intron 15.0%
!!! GAAAATTAAATTTTTGTGAA+GGG + chr6_4:86178173-86178192 Msa1001930:intron 15.0%
!!! CTATTTTTTAAACATAAATG+AGG - chr6_4:86178760-86178779 None:intergenic 15.0%
!! ATAAATTAATACAATTAAGG+CGG - chr6_4:86179062-86179081 None:intergenic 15.0%
!!! TATTTGTTTTCATTGAAAAA+TGG + chr6_4:86179739-86179758 Msa1001930:intron 15.0%
!!! GTTATTTTGACAAAAAAAAA+GGG - chr6_4:86181148-86181167 None:intergenic 15.0%
!!! TGTTATTTTGACAAAAAAAA+AGG - chr6_4:86181149-86181168 None:intergenic 15.0%
!! TAACTTAAGTATTACAAAAA+AGG - chr6_4:86181762-86181781 None:intergenic 15.0%
!! GTTATTATGATATAAAATGT+AGG + chr6_4:86181778-86181797 Msa1001930:intron 15.0%
!!! CAATAATACAATGTTTTATT+TGG + chr6_4:86181948-86181967 Msa1001930:intron 15.0%
!!! TCTTTTTTATACAAGTTTTT+TGG + chr6_4:86182403-86182422 Msa1001930:three_prime_UTR 15.0%
!! AAAAAAAATAAGTGTTACAA+GGG - chr6_4:86182486-86182505 None:intergenic 15.0%
!! TAAAAAAAATAAGTGTTACA+AGG - chr6_4:86182487-86182506 None:intergenic 15.0%
!! AATATTTATGTAATTGGGTT+CGG + chr6_4:86177513-86177532 Msa1001930:intron 20.0%
!! TATTATAGTATAGATCTATG+AGG - chr6_4:86177761-86177780 None:intergenic 20.0%
!! TAGATCTATACTATAATACA+TGG + chr6_4:86177763-86177782 Msa1001930:intron 20.0%
!!! ATTTTGTGTTTTTATGTTTG+TGG + chr6_4:86177894-86177913 Msa1001930:intron 20.0%
!! TTCTTATAATAAAGGACTAA+GGG - chr6_4:86177939-86177958 None:intergenic 20.0%
!! GTTAGAAGTTCTTATAATAA+AGG - chr6_4:86177947-86177966 None:intergenic 20.0%
!! TTAATAAGAGATATATTTGG+GGG + chr6_4:86178101-86178120 Msa1001930:intron 20.0%
!! TGTATATAGAAATTTGTAGA+GGG + chr6_4:86178138-86178157 Msa1001930:intron 20.0%
!!! GGAAAATTAAATTTTTGTGA+AGG + chr6_4:86178172-86178191 Msa1001930:intron 20.0%
!!! GGAAACAATTTTTTTTGAAA+TGG - chr6_4:86178242-86178261 None:intergenic 20.0%
!!! TGTTGATTTTTAATATTCTC+AGG - chr6_4:86178337-86178356 None:intergenic 20.0%
!! AACAAAAATATGGTATCTAT+TGG - chr6_4:86178391-86178410 None:intergenic 20.0%
!!! AGTACTAAAATTTGAAATGA+CGG + chr6_4:86178570-86178589 Msa1001930:intron 20.0%
!! TCATTACATTTCTATAGTTT+AGG + chr6_4:86178850-86178869 Msa1001930:intron 20.0%
!! CATTACATTTCTATAGTTTA+GGG + chr6_4:86178851-86178870 Msa1001930:intron 20.0%
!!! CAATTTGTTTTGTTTTTGTT+TGG + chr6_4:86179208-86179227 Msa1001930:intron 20.0%
!!! TTTTGTTTTTGTTTGGTTTA+AGG + chr6_4:86179215-86179234 Msa1001930:intron 20.0%
!! TAATCTACTCAAATAACTAA+TGG - chr6_4:86179800-86179819 None:intergenic 20.0%
!! TTAGTTATTTGAGTAGATTA+TGG + chr6_4:86179800-86179819 Msa1001930:intron 20.0%
!! TAGTTATTTGAGTAGATTAT+GGG + chr6_4:86179801-86179820 Msa1001930:intron 20.0%
!!! CAAAGCACTAAAATATATTT+TGG - chr6_4:86180032-86180051 None:intergenic 20.0%
!! AGAATCAAATATTCAAACTT+GGG - chr6_4:86180401-86180420 None:intergenic 20.0%
!! TAGAATCAAATATTCAAACT+TGG - chr6_4:86180402-86180421 None:intergenic 20.0%
!! AAGTTTGAATATTTGATTCT+AGG + chr6_4:86180401-86180420 Msa1001930:intron 20.0%
!! TAATTAAAACATGAACACAA+TGG - chr6_4:86180849-86180868 None:intergenic 20.0%
!!! AGTAATGATGTTTAAAATCA+TGG + chr6_4:86180989-86181008 Msa1001930:intron 20.0%
!! ACATAACGTATCATATATTT+AGG + chr6_4:86181097-86181116 Msa1001930:intron 20.0%
!! AAATGTACTAAATAGACAAT+AGG + chr6_4:86181553-86181572 Msa1001930:intron 20.0%
!! TTAGAGAATAATTGAACAAT+AGG - chr6_4:86181704-86181723 None:intergenic 20.0%
!!! AATGTTTTATTTGGTTTCAT+TGG + chr6_4:86181957-86181976 Msa1001930:intron 20.0%
!! GTTTCTTCAAATTTTCTTCT+GGG + chr6_4:86177343-86177362 Msa1001930:intron 25.0%
! ACAAAAAAAACTCACTTTGA+AGG - chr6_4:86177463-86177482 None:intergenic 25.0%
! ATATTTATGTAATTGGGTTC+GGG + chr6_4:86177514-86177533 Msa1001930:intron 25.0%
!! ATGTGATGATTTTCTATTAG+TGG - chr6_4:86177654-86177673 None:intergenic 25.0%
!!! ATTCATCTAATTGGTTTTTG+TGG + chr6_4:86177866-86177885 Msa1001930:intron 25.0%
! GTTCTTATAATAAAGGACTA+AGG - chr6_4:86177940-86177959 None:intergenic 25.0%
! GTGTATATAGAAATTTGTAG+AGG + chr6_4:86178137-86178156 Msa1001930:intron 25.0%
!!! ATTTTTTTTGAAATGGTCTG+TGG - chr6_4:86178235-86178254 None:intergenic 25.0%
!! TTGTAGAGCACTTATATATA+GGG - chr6_4:86178263-86178282 None:intergenic 25.0%
!! TTTGTAGAGCACTTATATAT+AGG - chr6_4:86178264-86178283 None:intergenic 25.0%
!!! CAAATTTTAGTACTGTTCAA+TGG - chr6_4:86178564-86178583 None:intergenic 25.0%
! TAAATGAGGACTAATAGTTT+AGG - chr6_4:86178746-86178765 None:intergenic 25.0%
! CTATAGTTTAGGGATTAAAT+AGG + chr6_4:86178861-86178880 Msa1001930:intron 25.0%
! GGATTAAATAGGATAGATAA+TGG + chr6_4:86178872-86178891 Msa1001930:intron 25.0%
! AGGATAGATAATGAAAGTTT+AGG + chr6_4:86178919-86178938 Msa1001930:intron 25.0%
!! AAGTTTAGGAGAAAAGTTTT+AGG + chr6_4:86178933-86178952 Msa1001930:intron 25.0%
! ACTCTTCAATAATTCATGTA+AGG + chr6_4:86178959-86178978 Msa1001930:intron 25.0%
!! ATAATACTAGTTTGTACGAA+AGG + chr6_4:86178982-86179001 Msa1001930:intron 25.0%
!!! AAGAGTATTGCTATTTAGTA+CGG - chr6_4:86179148-86179167 None:intergenic 25.0%
! AAACTTAAGTATCCTAAAGT+AGG + chr6_4:86179289-86179308 Msa1001930:CDS 25.0%
!! TGTGTAAAGAGATTTTATAC+TGG + chr6_4:86179575-86179594 Msa1001930:intron 25.0%
! TTAAACCATTATGCAATAAG+TGG + chr6_4:86179617-86179636 Msa1001930:intron 25.0%
! ACTTAATAGGTATAAGCATT+TGG + chr6_4:86179676-86179695 Msa1001930:intron 25.0%
! CTTAATAGGTATAAGCATTT+GGG + chr6_4:86179677-86179696 Msa1001930:intron 25.0%
! ATCAAAATAACACAACCAAA+AGG - chr6_4:86179950-86179969 None:intergenic 25.0%
! ATTATAATAGATAGTGAGCT+AGG + chr6_4:86180371-86180390 Msa1001930:intron 25.0%
!!! GGCATGATTTTAAAAAACTT+TGG - chr6_4:86180449-86180468 None:intergenic 25.0%
! AACAAACATTAGAGATACTT+GGG + chr6_4:86180605-86180624 Msa1001930:CDS 25.0%
!!! CATCAAACATGATTTTTTTC+AGG - chr6_4:86180969-86180988 None:intergenic 25.0%
! AAAAAAAAGGGACAACAATT+TGG - chr6_4:86181136-86181155 None:intergenic 25.0%
!! AAAGTTTAAAGTACTAAAGC+TGG - chr6_4:86181384-86181403 None:intergenic 25.0%
! ATGATATAAAATGTAGGTGA+AGG + chr6_4:86181784-86181803 Msa1001930:intron 25.0%
! TGATATAAAATGTAGGTGAA+GGG + chr6_4:86181785-86181804 Msa1001930:intron 25.0%
! ACCTCAATGACTATAAAATA+TGG + chr6_4:86182201-86182220 Msa1001930:intron 25.0%
!! ACCATATTTTATAGTCATTG+AGG - chr6_4:86182205-86182224 None:intergenic 25.0%
! ATATGGTTTATGTTTCTTGT+AGG + chr6_4:86182218-86182237 Msa1001930:intron 25.0%
TGAAGAAACCAAACAACTTA+CGG - chr6_4:86177332-86177351 None:intergenic 30.0%
! GGTTTCTTCAAATTTTCTTC+TGG + chr6_4:86177342-86177361 Msa1001930:intron 30.0%
! AAAACTCACTTTGAAGGATT+TGG - chr6_4:86177457-86177476 None:intergenic 30.0%
! TGATTTTCTATTAGTGGTGT+CGG - chr6_4:86177648-86177667 None:intergenic 30.0%
TTCAGTGTAATTATACGTGT+CGG + chr6_4:86177676-86177695 Msa1001930:intron 30.0%
AGAACTTCTAACGAAAATCA+CGG + chr6_4:86177955-86177974 Msa1001930:intron 30.0%
GGGTATTAAGAAAATGTTGT+TGG + chr6_4:86177976-86177995 Msa1001930:intron 30.0%
! TTGTAGAGGGTCTTATATTT+AGG + chr6_4:86178151-86178170 Msa1001930:intron 30.0%
TTTAATATTCTCAGGCAAGT+CGG - chr6_4:86178329-86178348 None:intergenic 30.0%
TTGAATGCATTTATTCGCAT+AGG + chr6_4:86178357-86178376 Msa1001930:intron 30.0%
TGAATGCATTTATTCGCATA+GGG + chr6_4:86178358-86178377 Msa1001930:intron 30.0%
AGGAACGTCTAACAAAAATA+TGG - chr6_4:86178401-86178420 None:intergenic 30.0%
TAGTTCATAGTGTTGTCAAA+TGG + chr6_4:86178519-86178538 Msa1001930:intron 30.0%
TTATGCGTGAAACTTCAATT+TGG + chr6_4:86178669-86178688 Msa1001930:intron 30.0%
ATAGAGATAGATAGAGTTTG+TGG + chr6_4:86178791-86178810 Msa1001930:intron 30.0%
!! AGAGTATTGCTATTTAGTAC+GGG - chr6_4:86179147-86179166 None:intergenic 30.0%
AGCAATACTCTTCATGTAAT+TGG + chr6_4:86179156-86179175 Msa1001930:intron 30.0%
GCAATACTCTTCATGTAATT+GGG + chr6_4:86179157-86179176 Msa1001930:intron 30.0%
!! TGTTTTTGTTTGGTTTAAGG+TGG + chr6_4:86179218-86179237 Msa1001930:intron 30.0%
! AATGCATTTCTCTTTTCTCA+TGG + chr6_4:86179407-86179426 Msa1001930:intron 30.0%
! TTTCTCTTTTCTCATGGAAT+AGG + chr6_4:86179413-86179432 Msa1001930:intron 30.0%
TTGTTCAAGTATGACATGAT+TGG - chr6_4:86179536-86179555 None:intergenic 30.0%
! TAAAGAGATTTTATACTGGC+AGG + chr6_4:86179579-86179598 Msa1001930:intron 30.0%
! AAAGAGATTTTATACTGGCA+GGG + chr6_4:86179580-86179599 Msa1001930:intron 30.0%
GATAACCACTTATTGCATAA+TGG - chr6_4:86179625-86179644 None:intergenic 30.0%
TATAAGCATTTGGGTACATA+TGG + chr6_4:86179686-86179705 Msa1001930:intron 30.0%
CTTATAATAAATGATGCCAG+TGG - chr6_4:86179982-86180001 None:intergenic 30.0%
TTATAAGTTCGTTTCGAATC+CGG + chr6_4:86179995-86180014 Msa1001930:intron 30.0%
TTGTATGTAAGAACCAAGAA+TGG + chr6_4:86180055-86180074 Msa1001930:intron 30.0%
AATCTTTCTACATCCATTCT+TGG - chr6_4:86180071-86180090 None:intergenic 30.0%
! CAGTTTCTAGAAAAAATCAC+AGG - chr6_4:86180097-86180116 None:intergenic 30.0%
! GTTCATTTGCTCTGAATTAT+TGG + chr6_4:86180157-86180176 Msa1001930:intron 30.0%
! TTTTGTTCATTCCTTCCATA+TGG + chr6_4:86180190-86180209 Msa1001930:intron 30.0%
TTTGTTCATTCCTTCCATAT+GGG + chr6_4:86180191-86180210 Msa1001930:intron 30.0%
!! AGTTTTGACAAAACTGTATC+TGG + chr6_4:86180228-86180247 Msa1001930:intron 30.0%
!! GTTTTGACAAAACTGTATCT+GGG + chr6_4:86180229-86180248 Msa1001930:intron 30.0%
CCAAATAAATGGAAGAATCT+TGG - chr6_4:86180470-86180489 None:intergenic 30.0%
CCAAGATTCTTCCATTTATT+TGG + chr6_4:86180467-86180486 Msa1001930:intron 30.0%
GATTCTTCCATTTATTTGGA+AGG + chr6_4:86180471-86180490 Msa1001930:intron 30.0%
TTCCATTTATTTGGAAGGAA+GGG + chr6_4:86180476-86180495 Msa1001930:intron 30.0%
!! TAATTTTTGCTGTCCTTTTC+AGG + chr6_4:86180523-86180542 Msa1001930:intron 30.0%
GCAAAATTCTTAAGAGCTAA+TGG + chr6_4:86180559-86180578 Msa1001930:CDS 30.0%
GAACAAACATTAGAGATACT+TGG + chr6_4:86180604-86180623 Msa1001930:CDS 30.0%
ATGATTCTAGCAGATCAATT+GGG - chr6_4:86180787-86180806 None:intergenic 30.0%
AATGATTCTAGCAGATCAAT+TGG - chr6_4:86180788-86180807 None:intergenic 30.0%
CACAAATTTCAACAACAGTT+TGG + chr6_4:86180890-86180909 Msa1001930:intron 30.0%
TGTGTTCAATGGATAACTAA+TGG + chr6_4:86181017-86181036 Msa1001930:intron 30.0%
GATACGTTATGTTAAGTAGA+TGG - chr6_4:86181089-86181108 None:intergenic 30.0%
! TAATCTACTGGCTACTTTAA+AGG + chr6_4:86181179-86181198 Msa1001930:intron 30.0%
TCATTGGAAATGTATATCTC+AGG + chr6_4:86181488-86181507 Msa1001930:intron 30.0%
TGTACTAAATAGACAATAGG+AGG + chr6_4:86181556-86181575 Msa1001930:intron 30.0%
AATGTACAAACCAAACTTGA+GGG - chr6_4:86181631-86181650 None:intergenic 30.0%
AAATGTACAAACCAAACTTG+AGG - chr6_4:86181632-86181651 None:intergenic 30.0%
! CAAAACCAATGTGATTTTGA+GGG - chr6_4:86181661-86181680 None:intergenic 30.0%
GATATAAAATGTAGGTGAAG+GGG + chr6_4:86181786-86181805 Msa1001930:intron 30.0%
CTCATTTACTTCTTGGAATT+TGG + chr6_4:86181821-86181840 Msa1001930:CDS 30.0%
AATTTGGTCACAAGAAGAAT+CGG + chr6_4:86181837-86181856 Msa1001930:CDS 30.0%
! GTATAGTCAATTTTCTCTAG+AGG - chr6_4:86182315-86182334 None:intergenic 30.0%
TTGACATGGAAATCTAAAGA+GGG - chr6_4:86182341-86182360 None:intergenic 30.0%
TTTGACATGGAAATCTAAAG+AGG - chr6_4:86182342-86182361 None:intergenic 30.0%
TAGTACAACAGTATTTGACA+TGG - chr6_4:86182355-86182374 None:intergenic 30.0%
! AAGAAAGAGAGAGAGGTTTT+GGG - chr6_4:86177091-86177110 None:intergenic 35.0%
! AAGAAGAGAGTGTGAAGAAA+AGG - chr6_4:86177132-86177151 None:intergenic 35.0%
! AGTACATGATTGGTTGTTGT+TGG - chr6_4:86177201-86177220 None:intergenic 35.0%
! TTAGAGAGAGAGTACATGAT+TGG - chr6_4:86177211-86177230 None:intergenic 35.0%
! CGGAAATTTGTGATGGAAAT+GGG - chr6_4:86177269-86177288 None:intergenic 35.0%
! ACGGAAATTTGTGATGGAAA+TGG - chr6_4:86177270-86177289 None:intergenic 35.0%
GAAGAAACCAAACAACTTAC+GGG - chr6_4:86177331-86177350 None:intergenic 35.0%
! CTTCAAATTTTCTTCTGGGT+CGG + chr6_4:86177347-86177366 Msa1001930:intron 35.0%
!! TGAAGGATTTGGAGTTTTCT+TGG - chr6_4:86177446-86177465 None:intergenic 35.0%
TAGTCTATACCTATGAAGCA+CGG + chr6_4:86177605-86177624 Msa1001930:intron 35.0%
TAGTATAGATCTATGAGGCA+TGG - chr6_4:86177756-86177775 None:intergenic 35.0%
ACTAATCCGGTTAACTTAGT+GGG - chr6_4:86177812-86177831 None:intergenic 35.0%
AACTAATCCGGTTAACTTAG+TGG - chr6_4:86177813-86177832 None:intergenic 35.0%
!! ACTAAGTTAACCGGATTAGT+TGG + chr6_4:86177812-86177831 Msa1001930:intron 35.0%
GAACTTCTAACGAAAATCAC+GGG + chr6_4:86177956-86177975 Msa1001930:intron 35.0%
TGTGAAGGGTCTACAAATTT+AGG + chr6_4:86178187-86178206 Msa1001930:intron 35.0%
GTGAAGGGTCTACAAATTTA+GGG + chr6_4:86178188-86178207 Msa1001930:intron 35.0%
TCTACAAATTTAGGGATGGA+GGG + chr6_4:86178196-86178215 Msa1001930:intron 35.0%
CAAGTCGGTAATACTAATCA+GGG - chr6_4:86178314-86178333 None:intergenic 35.0%
TGTTAGACGTTCCTGTAATA+AGG + chr6_4:86178407-86178426 Msa1001930:intron 35.0%
GTTAGACGTTCCTGTAATAA+GGG + chr6_4:86178408-86178427 Msa1001930:intron 35.0%
TTCATAGTGTTGTCAAATGG+TGG + chr6_4:86178522-86178541 Msa1001930:intron 35.0%
!! TTGAAATGACGGCTATTTTC+TGG + chr6_4:86178581-86178600 Msa1001930:intron 35.0%
TGGTCCATACTATTTGTACT+TGG + chr6_4:86178689-86178708 Msa1001930:intron 35.0%
GAGACCAAGTACAAATAGTA+TGG - chr6_4:86178696-86178715 None:intergenic 35.0%
AATACAATTAAGGCGGTTAG+CGG - chr6_4:86179055-86179074 None:intergenic 35.0%
! TTTGTTTGGTTTAAGGTGGT+CGG + chr6_4:86179222-86179241 Msa1001930:intron 35.0%
! TATAAAGGCATATGCAATGG+CGG + chr6_4:86179252-86179271 Msa1001930:CDS 35.0%
!!! CTCATGGGGATTTTAATTGA+AGG + chr6_4:86179325-86179344 Msa1001930:CDS 35.0%
! AACTTTTCCAAGATAGTGCT+TGG + chr6_4:86179450-86179469 Msa1001930:intron 35.0%
! AAGGTGCTTAATCGCATTTA+GGG - chr6_4:86179931-86179950 None:intergenic 35.0%
!! AAAGGTGCTTAATCGCATTT+AGG - chr6_4:86179932-86179951 None:intergenic 35.0%
! AAATGCGATTAAGCACCTTT+TGG + chr6_4:86179932-86179951 Msa1001930:intron 35.0%
TAATAAATGATGCCAGTGGA+TGG - chr6_4:86179978-86179997 None:intergenic 35.0%
! AAACTGTTTAGTTTCCCTAC+AGG + chr6_4:86180111-86180130 Msa1001930:intron 35.0%
ATTGCCAAGTAAATCCTGTA+GGG - chr6_4:86180128-86180147 None:intergenic 35.0%
TATTGCCAAGTAAATCCTGT+AGG - chr6_4:86180129-86180148 None:intergenic 35.0%
CAGGATTTACTTGGCAATAT+TGG + chr6_4:86180130-86180149 Msa1001930:intron 35.0%
! CATTTGCTCTGAATTATTGG+TGG + chr6_4:86180160-86180179 Msa1001930:intron 35.0%
GTCAAAACTCAAGAATGTCT+TGG - chr6_4:86180217-86180236 None:intergenic 35.0%
! TGTCTCTAAGAAATGAGTTG+TGG + chr6_4:86180340-86180359 Msa1001930:intron 35.0%
! GTCTCTAAGAAATGAGTTGT+GGG + chr6_4:86180341-86180360 Msa1001930:intron 35.0%
CTTCCATTTATTTGGAAGGA+AGG + chr6_4:86180475-86180494 Msa1001930:intron 35.0%
TTCCCTTCCTTCCAAATAAA+TGG - chr6_4:86180481-86180500 None:intergenic 35.0%
AGCTTTACTTGTTCCTGAAA+AGG - chr6_4:86180539-86180558 None:intergenic 35.0%
CTTAATGAGACATCAAAGTC+AGG + chr6_4:86180703-86180722 Msa1001930:CDS 35.0%
AAGTCAGGTATGGATGATTT+CGG + chr6_4:86180718-86180737 Msa1001930:intron 35.0%
TGCTAGAATCATTGTTCTGT+TGG + chr6_4:86180795-86180814 Msa1001930:intron 35.0%
TAGAATCATTGTTCTGTTGG+TGG + chr6_4:86180798-86180817 Msa1001930:intron 35.0%
TCATGGTTAAGTGTGTTCAA+TGG + chr6_4:86181006-86181025 Msa1001930:intron 35.0%
CACAACGCTAATTAATCTAC+TGG + chr6_4:86181167-86181186 Msa1001930:intron 35.0%
! CAAGCATTTTCTAACAGATC+AGG - chr6_4:86181264-86181283 None:intergenic 35.0%
CTCAATAAGGACTGAAAATC+AGG + chr6_4:86181332-86181351 Msa1001930:intron 35.0%
ACTCAAGTAGACTATCAACA+TGG - chr6_4:86181417-86181436 None:intergenic 35.0%
GTGTGTCTGATATGTTTCAT+TGG + chr6_4:86181472-86181491 Msa1001930:intron 35.0%
TGTATATCTCAGGAGATAGT+AGG + chr6_4:86181498-86181517 Msa1001930:intron 35.0%
! CCAAAACCAATGTGATTTTG+AGG - chr6_4:86181662-86181681 None:intergenic 35.0%
!!! CCTCAAAATCACATTGGTTT+TGG + chr6_4:86181659-86181678 Msa1001930:intron 35.0%
AACGTGACTCATTTACTTCT+TGG + chr6_4:86181814-86181833 Msa1001930:CDS 35.0%
!! TGCTGTTTCAGCAATTTCTT+TGG - chr6_4:86181908-86181927 None:intergenic 35.0%
GATAACCGGAATCAAACTAA+CGG + chr6_4:86182086-86182105 Msa1001930:intron 35.0%
TTATGTTTCTTGTAGGCTAG+TGG + chr6_4:86182225-86182244 Msa1001930:intron 35.0%
! AAGCAAGCGTAAGAATTTTC+TGG + chr6_4:86182270-86182289 Msa1001930:exon 35.0%
! AGCAAGCGTAAGAATTTTCT+GGG + chr6_4:86182271-86182290 Msa1001930:exon 35.0%
TGTTACAAGGGAAAAACAGA+AGG - chr6_4:86182474-86182493 None:intergenic 35.0%
GAATTTGTAGTGTGCACACT+TGG - chr6_4:86177042-86177061 None:intergenic 40.0%
! AGAAAGAGAGAGAGGTTTTG+GGG - chr6_4:86177090-86177109 None:intergenic 40.0%
! GAAGAAAGAGAGAGAGGTTT+TGG - chr6_4:86177092-86177111 None:intergenic 40.0%
ACCTCTCTCTCTTTCTTCAA+TGG + chr6_4:86177094-86177113 Msa1001930:exon 40.0%
GTGTGAAGAAAAGGTTGGAA+TGG - chr6_4:86177123-86177142 None:intergenic 40.0%
! AGAGAGTGTGAAGAAAAGGT+TGG - chr6_4:86177128-86177147 None:intergenic 40.0%
CTCTCTCTAACTTCTCTCTT+TGG + chr6_4:86177221-86177240 Msa1001930:CDS 40.0%
AAACAACTTACGGGTCAGTA+GGG - chr6_4:86177322-86177341 None:intergenic 40.0%
! TTTTGCAGGAATCCACAATC+TGG + chr6_4:86177415-86177434 Msa1001930:intron 40.0%
TTCTTGGTTTCACCAGATTG+TGG - chr6_4:86177430-86177449 None:intergenic 40.0%
CTAATCCGGTTAACTTAGTG+GGG - chr6_4:86177811-86177830 None:intergenic 40.0%
AGGGTCTACAAATTTAGGGA+TGG + chr6_4:86178192-86178211 Msa1001930:intron 40.0%
GTCTACAAATTTAGGGATGG+AGG + chr6_4:86178195-86178214 Msa1001930:intron 40.0%
CTACAAATTTAGGGATGGAG+GGG + chr6_4:86178197-86178216 Msa1001930:intron 40.0%
TTGAAATGGTCTGTGGACAA+CGG - chr6_4:86178228-86178247 None:intergenic 40.0%
GCAAGTCGGTAATACTAATC+AGG - chr6_4:86178315-86178334 None:intergenic 40.0%
GTTCCTGTAATAAGGGATGA+GGG + chr6_4:86178415-86178434 Msa1001930:intron 40.0%
ACTGTTATAGCCGAGCTATA+CGG + chr6_4:86178442-86178461 Msa1001930:intron 40.0%
!! TTGTCAAATGGTGGCTTTAG+CGG + chr6_4:86178531-86178550 Msa1001930:intron 40.0%
! AGTGTTATTCTTCGCTTTCG+TGG - chr6_4:86179014-86179033 None:intergenic 40.0%
! GGCTATAAAGGCATATGCAA+TGG + chr6_4:86179249-86179268 Msa1001930:CDS 40.0%
!! CAAAAGCGCTCGTGTAATAT+TGG - chr6_4:86179865-86179884 None:intergenic 40.0%
AGGTGCTTAATCGCATTTAG+GGG - chr6_4:86179930-86179949 None:intergenic 40.0%
! TTTTGATATGCACCATCCAC+TGG + chr6_4:86179963-86179982 Msa1001930:intron 40.0%
!!! TATTTTGGCTTGCATACGTC+CGG - chr6_4:86180017-86180036 None:intergenic 40.0%
GTTTCCCTACAGGATTTACT+TGG + chr6_4:86180121-86180140 Msa1001930:intron 40.0%
TTAAAATTGGGTGCGTAGAC+CGG + chr6_4:86180301-86180320 Msa1001930:intron 40.0%
AGATACTTGGGAAATCTGAC+TGG + chr6_4:86180617-86180636 Msa1001930:CDS 40.0%
TGAAGTGGTTCAGTCAAAGA+AGG - chr6_4:86180664-86180683 None:intergenic 40.0%
ACTTCATAAAGCCCTCGATT+GGG + chr6_4:86180678-86180697 Msa1001930:CDS 40.0%
TGAGACATCAAAGTCAGGTA+TGG + chr6_4:86180708-86180727 Msa1001930:intron 40.0%
AGATCAATTGGGAAAATGCC+AGG - chr6_4:86180776-86180795 None:intergenic 40.0%
!! ATCATTGTTCTGTTGGTGGT+AGG + chr6_4:86180802-86180821 Msa1001930:intron 40.0%
!! TCATTGTTCTGTTGGTGGTA+GGG + chr6_4:86180803-86180822 Msa1001930:intron 40.0%
AACAACAGTTTGGATGATGC+AGG + chr6_4:86180900-86180919 Msa1001930:intron 40.0%
! ACTAATGGCTTGCGAAACTT+TGG + chr6_4:86181032-86181051 Msa1001930:intron 40.0%
! TTTTTCCCTGCTGCTCAATA+AGG + chr6_4:86181319-86181338 Msa1001930:intron 40.0%
TCTAGTGAGCTAGTTGAATG+TGG + chr6_4:86181592-86181611 Msa1001930:intron 40.0%
CTAGTGAGCTAGTTGAATGT+GGG + chr6_4:86181593-86181612 Msa1001930:intron 40.0%
TTCCTCCCTCAAAATCACAT+TGG + chr6_4:86181653-86181672 Msa1001930:intron 40.0%
!! AACCAATGTGATTTTGAGGG+AGG - chr6_4:86181658-86181677 None:intergenic 40.0%
TCATGAAGTCCGGTTGAATT+TGG - chr6_4:86182068-86182087 None:intergenic 40.0%
ATTCCGGTTATCATGAAGTC+CGG - chr6_4:86182078-86182097 None:intergenic 40.0%
! ATAGTCATTGAGGTGTCAGT+CGG - chr6_4:86182195-86182214 None:intergenic 40.0%
AGGCTAGTGGTGATATTGAT+TGG + chr6_4:86182238-86182257 Msa1001930:intron 40.0%
! GCAAGCGTAAGAATTTTCTG+GGG + chr6_4:86182272-86182291 Msa1001930:exon 40.0%
! TTTTCGCAGTAGTGTGATTG+TGG + chr6_4:86182430-86182449 Msa1001930:three_prime_UTR 40.0%
!!! AAAGAGAGAGAGGTTTTGGG+GGG - chr6_4:86177088-86177107 None:intergenic 45.0%
!! GAAAGAGAGAGAGGTTTTGG+GGG - chr6_4:86177089-86177108 None:intergenic 45.0%
GCCATTGAAGAAAGAGAGAG+AGG - chr6_4:86177098-86177117 None:intergenic 45.0%
!! AGTGTGTTGGTGTTGGTGTT+GGG - chr6_4:86177161-86177180 None:intergenic 45.0%
! AGAGAAGAGTGTGTTGGTGT+TGG - chr6_4:86177168-86177187 None:intergenic 45.0%
! TGAACGAGAGAAGAGTGTGT+TGG - chr6_4:86177174-86177193 None:intergenic 45.0%
! TTGTGATGGAAATGGGTCGT+TGG - chr6_4:86177262-86177281 None:intergenic 45.0%
AGTGGCACGGAAATTTGTGA+TGG - chr6_4:86177276-86177295 None:intergenic 45.0%
!! TTTCCGTGCCACTTCAGAAA+CGG + chr6_4:86177283-86177302 Msa1001930:CDS 45.0%
GGGTCAGTAGGGAGATTAAA+CGG - chr6_4:86177311-86177330 None:intergenic 45.0%
CAAACAACTTACGGGTCAGT+AGG - chr6_4:86177323-86177342 None:intergenic 45.0%
CTACTGACCCGTAAGTTGTT+TGG + chr6_4:86177321-86177340 Msa1001930:intron 45.0%
ATACCTATGAAGCACGGACA+CGG + chr6_4:86177611-86177630 Msa1001930:intron 45.0%
!! TATACGTGTCGGTGTCATCT+TGG + chr6_4:86177687-86177706 Msa1001930:intron 45.0%
GCATGGACACTCTTTGGATT+AGG - chr6_4:86177739-86177758 None:intergenic 45.0%
TATGAGGCATGGACACTCTT+TGG - chr6_4:86177745-86177764 None:intergenic 45.0%
TAGTGGGGCTCAATTGAAGT+CGG - chr6_4:86177796-86177815 None:intergenic 45.0%
TTGAGCCCCACTAAGTTAAC+CGG + chr6_4:86177803-86177822 Msa1001930:intron 45.0%
GGCTCAAGTACCAACTAATC+CGG - chr6_4:86177825-86177844 None:intergenic 45.0%
TGAAATGGTCTGTGGACAAC+GGG - chr6_4:86178227-86178246 None:intergenic 45.0%
CGTTCCTGTAATAAGGGATG+AGG + chr6_4:86178414-86178433 Msa1001930:intron 45.0%
ACTCCCTCATCCCTTATTAC+AGG - chr6_4:86178421-86178440 None:intergenic 45.0%
AAACCTGTAGCCGTATAGCT+CGG - chr6_4:86178455-86178474 None:intergenic 45.0%
AGAGCTTCGGTTCCTACTTT+AGG - chr6_4:86179304-86179323 None:intergenic 45.0%
AATCCCCATGAGAAGAGCTT+CGG - chr6_4:86179317-86179336 None:intergenic 45.0%
TCTTGAGCCAAGCACTATCT+TGG - chr6_4:86179460-86179479 None:intergenic 45.0%
! AATCGCATTTAGGGGGCATA+TGG - chr6_4:86179922-86179941 None:intergenic 45.0%
GGTGCTTAATCGCATTTAGG+GGG - chr6_4:86179929-86179948 None:intergenic 45.0%
AATGTCTTGGCCCATATGGA+AGG - chr6_4:86180204-86180223 None:intergenic 45.0%
CAAGAATGTCTTGGCCCATA+TGG - chr6_4:86180208-86180227 None:intergenic 45.0%
!! ACAGCAGTGTTGACACTTTC+CGG - chr6_4:86180323-86180342 None:intergenic 45.0%
!! CAGTCAAAGAAGGTACCACA+GGG - chr6_4:86180654-86180673 None:intergenic 45.0%
!! TCAGTCAAAGAAGGTACCAC+AGG - chr6_4:86180655-86180674 None:intergenic 45.0%
! CAATCGAGGGCTTTATGAAG+TGG - chr6_4:86180679-86180698 None:intergenic 45.0%
CACTTCATAAAGCCCTCGAT+TGG + chr6_4:86180677-86180696 Msa1001930:CDS 45.0%
CTCATTAAGTGCCCAATCGA+GGG - chr6_4:86180692-86180711 None:intergenic 45.0%
TCTCATTAAGTGCCCAATCG+AGG - chr6_4:86180693-86180712 None:intergenic 45.0%
TGTATTGAGAAGTAGCCTCC+TGG + chr6_4:86180755-86180774 Msa1001930:intron 45.0%
TCAATTGGGAAAATGCCAGG+AGG - chr6_4:86180773-86180792 None:intergenic 45.0%
TCAGTCCTTATTGAGCAGCA+GGG - chr6_4:86181327-86181346 None:intergenic 45.0%
TTCAGTCCTTATTGAGCAGC+AGG - chr6_4:86181328-86181347 None:intergenic 45.0%
CACAGACAGTAGACAAACTG+AGG - chr6_4:86181451-86181470 None:intergenic 45.0%
GTTGAATGTGGGAGACTTTC+AGG + chr6_4:86181604-86181623 Msa1001930:intron 45.0%
ACTTTCAGGACCCTCAAGTT+TGG + chr6_4:86181618-86181637 Msa1001930:intron 45.0%
! CGAAAGGTCTTGTCTGCTTT+AGG + chr6_4:86181865-86181884 Msa1001930:CDS 45.0%
GAAAATGTTCGAACCTACCG+TGG + chr6_4:86182025-86182044 Msa1001930:intron 45.0%
!! CGGTTGAATTTGGCTTGAAC+CGG - chr6_4:86182058-86182077 None:intergenic 45.0%
CGGTTCAAGCCAAATTCAAC+CGG + chr6_4:86182056-86182075 Msa1001930:intron 45.0%
CAACCGGACTTCATGATAAC+CGG + chr6_4:86182072-86182091 Msa1001930:intron 45.0%
! GTTCGCCGTTAGTTTGATTC+CGG - chr6_4:86182094-86182113 None:intergenic 45.0%
TGTCCTATTCCCGGTTCTAT+CGG + chr6_4:86182114-86182133 Msa1001930:intron 45.0%
CTAGTTCAACCGATAGAACC+GGG - chr6_4:86182126-86182145 None:intergenic 45.0%
GCTAGTTCAACCGATAGAAC+CGG - chr6_4:86182127-86182146 None:intergenic 45.0%
! GTTCTATCGGTTGAACTAGC+TGG + chr6_4:86182127-86182146 Msa1001930:intron 45.0%
!! CAAAAAAAAAAAAAAAAAAA+AGG + chr6_4:86178899-86178918 Msa1001930:intron 5.0%
!! GAGTGTGTTGGTGTTGGTGT+TGG - chr6_4:86177162-86177181 None:intergenic 50.0%
! AAACGGCACCGTTTCTGAAG+TGG - chr6_4:86177294-86177313 None:intergenic 50.0%
! CTTGAGAGGAGCACACTCAT+AGG - chr6_4:86177541-86177560 None:intergenic 50.0%
CTATGAGTGTGCTCCTCTCA+AGG + chr6_4:86177539-86177558 Msa1001930:intron 50.0%
ATCGAACCTGAGACCTTGAG+AGG - chr6_4:86177555-86177574 None:intergenic 50.0%
GATTAGGCGTGTTACGCTGT+CGG - chr6_4:86177723-86177742 None:intergenic 50.0%
AGGCGGTTAGCGGAAATCAT+GGG - chr6_4:86179045-86179064 None:intergenic 50.0%
AAGGCGGTTAGCGGAAATCA+TGG - chr6_4:86179046-86179065 None:intergenic 50.0%
GCACTGTATCGTGTCTTTCG+TGG + chr6_4:86179113-86179132 Msa1001930:intron 50.0%
! CAATGGCGGAGTTGGAAACA+AGG + chr6_4:86179266-86179285 Msa1001930:CDS 50.0%
AGGAACCGAAGCTCTTCTCA+TGG + chr6_4:86179309-86179328 Msa1001930:CDS 50.0%
GGAACCGAAGCTCTTCTCAT+GGG + chr6_4:86179310-86179329 Msa1001930:CDS 50.0%
GAACCGAAGCTCTTCTCATG+GGG + chr6_4:86179311-86179330 Msa1001930:CDS 50.0%
TGGTCACAAGAAGAATCGGC+AGG + chr6_4:86181841-86181860 Msa1001930:CDS 50.0%
AGAAGAATCGGCAGGTCGAA+AGG + chr6_4:86181849-86181868 Msa1001930:CDS 50.0%
AACCTACCGTGGTTCAACTC+CGG + chr6_4:86182036-86182055 Msa1001930:intron 50.0%
CTTGAACCGGAGTTGAACCA+CGG - chr6_4:86182045-86182064 None:intergenic 50.0%
CAACCGATAGAACCGGGAAT+AGG - chr6_4:86182120-86182139 None:intergenic 50.0%
!!! GTTTTGGGGGGTGCGCTTTT+GGG - chr6_4:86177076-86177095 None:intergenic 55.0%
!! GCACCGTTTCTGAAGTGGCA+CGG - chr6_4:86177289-86177308 None:intergenic 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + chr6_4:86177546-86177565 Msa1001930:intron 55.0%
TGTCCGTGTCCGTGCTTCAT+AGG - chr6_4:86177617-86177636 None:intergenic 55.0%
TAGCCGAGCTATACGGCTAC+AGG + chr6_4:86178449-86178468 Msa1001930:intron 55.0%
! TTGGTTTAAGGTGGTCGGCG+AGG + chr6_4:86179227-86179246 Msa1001930:intron 55.0%
! TGGTTTAAGGTGGTCGGCGA+GGG + chr6_4:86179228-86179247 Msa1001930:intron 55.0%
! GGCATATGCAATGGCGGAGT+TGG + chr6_4:86179258-86179277 Msa1001930:CDS 55.0%
!! CAAAGAAGGTACCACAGGGC+TGG - chr6_4:86180650-86180669 None:intergenic 55.0%
AACCGGAGTTGAACCACGGT+AGG - chr6_4:86182041-86182060 None:intergenic 55.0%
ACGGCGAACTGTCCTATTCC+CGG + chr6_4:86182105-86182124 Msa1001930:intron 55.0%
!! GGTGCGCTTTTGGGTGGGTT+TGG - chr6_4:86177067-86177086 None:intergenic 60.0%
!!! GGTTTTGGGGGGTGCGCTTT+TGG - chr6_4:86177077-86177096 None:intergenic 60.0%
GTGGTCGGCGAGGGCTATAA+AGG + chr6_4:86179237-86179256 Msa1001930:CDS 60.0%
CTGGTACTACTCCAGCCCTG+TGG + chr6_4:86180636-86180655 Msa1001930:CDS 60.0%
!! TGGGGGGTGCGCTTTTGGGT+GGG - chr6_4:86177072-86177091 None:intergenic 65.0%
!! TTGGGGGGTGCGCTTTTGGG+TGG - chr6_4:86177073-86177092 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 86177014 86182527 86177014 ID=Msa1001930;Name=Msa1001930
chr6_4 mRNA 86177014 86182527 86177014 ID=Msa1001930-mRNA-1;Parent=Msa1001930;Name=Msa1001930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=99|1|1|1|1|1|6|246|240
chr6_4 exon 86177014 86177330 86177014 ID=Msa1001930-mRNA-1:exon:16964;Parent=Msa1001930-mRNA-1
chr6_4 exon 86177423 86177467 86177423 ID=Msa1001930-mRNA-1:exon:16965;Parent=Msa1001930-mRNA-1
chr6_4 exon 86179237 86179346 86179237 ID=Msa1001930-mRNA-1:exon:16966;Parent=Msa1001930-mRNA-1
chr6_4 exon 86180545 86180724 86180545 ID=Msa1001930-mRNA-1:exon:16967;Parent=Msa1001930-mRNA-1
chr6_4 exon 86181800 86181927 86181800 ID=Msa1001930-mRNA-1:exon:16968;Parent=Msa1001930-mRNA-1
chr6_4 exon 86182240 86182527 86182240 ID=Msa1001930-mRNA-1:exon:16969;Parent=Msa1001930-mRNA-1
chr6_4 five_prime_UTR 86177014 86177112 86177014 ID=Msa1001930-mRNA-1:five_prime_utr;Parent=Msa1001930-mRNA-1
chr6_4 CDS 86177113 86177330 86177113 ID=Msa1001930-mRNA-1:cds;Parent=Msa1001930-mRNA-1
chr6_4 CDS 86177423 86177467 86177423 ID=Msa1001930-mRNA-1:cds;Parent=Msa1001930-mRNA-1
chr6_4 CDS 86179237 86179346 86179237 ID=Msa1001930-mRNA-1:cds;Parent=Msa1001930-mRNA-1
chr6_4 CDS 86180545 86180724 86180545 ID=Msa1001930-mRNA-1:cds;Parent=Msa1001930-mRNA-1
chr6_4 CDS 86181800 86181927 86181800 ID=Msa1001930-mRNA-1:cds;Parent=Msa1001930-mRNA-1
chr6_4 CDS 86182240 86182281 86182240 ID=Msa1001930-mRNA-1:cds;Parent=Msa1001930-mRNA-1
chr6_4 three_prime_UTR 86182282 86182527 86182282 ID=Msa1001930-mRNA-1:three_prime_utr;Parent=Msa1001930-mRNA-1
Gene Sequence

>Msa1001930

ATGGCTTCCATTCCAACCTTTTCTTCACACTCTCTTCTTCTCAAACCCAACACCAACACCAACACACTCTTCTCTCGTTCATTCTCCAACAACAACCAATCATGTACTCTCTCTCTAACTTCTCTCTTTGGAACAAAATTCACTCTCCAACGACCCATTTCCATCACAAATTTCCGTGCCACTTCAGAAACGGTGCCGTTTAATCTCCCTACTGACCCGAATCCACAATCTGGTGAAACCAAGAAAACTCCAAATCCTTCAAAGTGGTCGGCGAGGGCTATAAAGGCATATGCAATGGCGGAGTTGGAAACAAGGAAACTTAAGTATCCTAAAGTAGGAACCGAAGCTCTTCTCATGGGGATTTTAATTGAAGGAACAAGTAAAGCTGCAAAATTCTTAAGAGCTAATGGAATTACTTATCTGAAAGTACGCGAACAAACATTAGAGATACTTGGGAAATCTGACTGGTACTACTCCAGCCCTGTGGTACCTTCTTTGACTGAACCACTTCATAAAGCCCTCGATTGGGCACTTAATGAGACATCAAAGTCAGGTGAAGGGGAAACAAACGTGACTCATTTACTTCTTGGAATTTGGTCACAAGAAGAATCGGCAGGTCGAAAGGTCTTGTCTGCTTTAGGTTTCAACGATGAAAAAGCCAAAGAAATTGCTGAAACAGCAGCTAGTGGTGATATTGATTGGAGTTTCAAGAAGCAAGCGTAA

Protein sequence

>Msa1001930

MASIPTFSSHSLLLKPNTNTNTLFSRSFSNNNQSCTLSLTSLFGTKFTLQRPISITNFRATSETVPFNLPTDPNPQSGETKKTPNPSKWSARAIKAYAMAELETRKLKYPKVGTEALLMGILIEGTSKAAKFLRANGITYLKVREQTLEILGKSDWYYSSPVVPSLTEPLHKALDWALNETSKSGEGETNVTHLLLGIWSQEESAGRKVLSALGFNDEKAKEIAETAASGDIDWSFKKQA*