AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0800150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800150 MtrunA17_Chr5g0405701 96.260 508 19 0 1 508 692 1199 0.0 1003
Msa0800150 MtrunA17_Chr8g0371601 67.978 534 125 7 3 509 656 1170 0.0 696
Msa0800150 MtrunA17_Chr8g0377481 34.722 144 62 2 356 493 838 955 1.73e-18 89.4
Msa0800150 MtrunA17_Chr3g0122391 34.932 146 64 2 353 493 893 1012 2.79e-17 85.5
Msa0800150 MtrunA17_Chr1g0197591 38.129 139 63 5 354 492 921 1036 1.32e-16 83.2
Msa0800150 MtrunA17_Chr1g0194731 32.450 151 78 4 343 492 312 439 7.59e-16 79.7
Msa0800150 MtrunA17_Chr8g0392301 31.953 169 74 4 356 509 858 1000 9.36e-16 80.5
Msa0800150 MtrunA17_Chr5g0447641 30.994 171 68 4 347 493 1056 1200 9.51e-14 74.3
Msa0800150 MtrunA17_Chr8g0343551 52.381 63 26 2 430 492 15 73 2.52e-13 65.9
Msa0800150 MtrunA17_Chr1g0150511 30.189 159 58 3 361 494 870 1000 2.24e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800150 AT2G17820.1 58.065 527 188 8 4 508 684 1199 0.0 585
Msa0800150 AT2G47430.1 27.076 554 292 18 10 493 597 1108 1.37e-34 139
Msa0800150 AT2G01830.2 33.540 161 75 2 353 507 939 1073 2.51e-17 85.9
Msa0800150 AT2G01830.5 33.540 161 75 2 353 507 928 1062 2.69e-17 85.9
Msa0800150 AT2G01830.1 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa0800150 AT2G01830.4 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa0800150 AT2G01830.6 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa0800150 AT2G01830.3 33.540 161 75 2 353 507 916 1050 2.72e-17 85.9
Msa0800150 AT5G35750.1 28.313 166 75 2 360 507 1036 1175 3.04e-15 79.3
Msa0800150 AT1G27320.1 32.051 156 62 2 356 493 887 1016 4.19e-15 79.0
Msa0800150 AT3G04580.2 33.553 152 72 4 351 501 634 757 1.01e-13 74.3
Msa0800150 AT3G04580.1 33.553 152 72 4 351 501 634 757 1.01e-13 74.3

Find 94 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGACGAAGCTCCGTCTTTA+TGG 0.118108 5_3:-13551290 None:intergenic
TTAAATCCTTCAAGATTTAT+TGG 0.172560 5_3:-13551097 None:intergenic
TTACAACTATGTACATTTCT+AGG 0.187196 5_3:-13552559 None:intergenic
TCATCGGTTAACTTTAAAAT+TGG 0.200671 5_3:-13551520 None:intergenic
AACTTCCTTCACAAGTATTT+TGG 0.220256 5_3:+13551223 Msa0800150:CDS
GTTGCAACCCTTTGAATTAC+TGG 0.261968 5_3:-13551721 None:intergenic
GCCAATTGACTTCAAGCTTA+TGG 0.265808 5_3:+13552503 Msa0800150:CDS
GCTTGCACTACAAGGCAATA+TGG 0.271450 5_3:+13550928 Msa0800150:CDS
TTCTATTAGGTTTATAGTTA+TGG 0.274459 5_3:-13552701 None:intergenic
TATATACATTTATTTCTATT+AGG 0.278525 5_3:-13552714 None:intergenic
TCAATATGATTTGATCCTAA+TGG 0.301867 5_3:+13551903 Msa0800150:CDS
GCCTCATATCCATCCATCTT+TGG 0.303088 5_3:-13552351 None:intergenic
CATGCCAACCTTAAGGCATT+TGG 0.328149 5_3:-13552463 None:intergenic
AGTGGATGCTCTTAATTATA+TGG 0.332374 5_3:+13551801 Msa0800150:CDS
TTGCAACACAAGCTTATGAT+AGG 0.334949 5_3:+13551623 Msa0800150:CDS
TTGACTTAAGCACAGATATA+TGG 0.337006 5_3:+13551188 Msa0800150:CDS
AGAAATCACTTGAGGGGTTA+AGG 0.349957 5_3:+13551677 Msa0800150:CDS
GCTTACAGTCTAGTAGTTGA+TGG 0.352312 5_3:-13550044 None:intergenic
AGAAATCAAGGTTACCAAAA+AGG 0.359146 5_3:+13550668 Msa0800150:CDS
TATGTACATTTCTAGGTTGT+TGG 0.363384 5_3:-13552552 None:intergenic
AACCGATGAAAATGAACATT+TGG 0.389298 5_3:+13551534 Msa0800150:CDS
ACCATAAGCTTGAAGTCAAT+TGG 0.402673 5_3:-13552504 None:intergenic
GTACAAGATTCTTCTTCCCT+TGG 0.408031 5_3:-13551568 None:intergenic
ATGAGGCAACAAAAGCAATA+AGG 0.417051 5_3:+13552367 Msa0800150:CDS
AACACAGAATCCCATTTGCT+TGG 0.417471 5_3:-13549999 None:intergenic
GAGATAACAAAGTGATACTT+TGG 0.425255 5_3:+13549840 Msa0800150:CDS
TTTGACAGACAATGGCTTAG+TGG 0.429155 5_3:+13550767 Msa0800150:CDS
AGGCATGGAGGTACTGGTCT+AGG 0.437294 5_3:+13550341 Msa0800150:intron
TATTTCAGGCATGGAGGTAC+TGG 0.439009 5_3:+13550335 Msa0800150:intron
TTTGATCCTAATGGATTGTC+AGG 0.439291 5_3:+13551912 Msa0800150:CDS
CACTATCCAATAAATCTTGA+AGG 0.440106 5_3:+13551091 Msa0800150:CDS
TCTTTGCATCGTTAGGAACT+TGG 0.444026 5_3:+13550364 Msa0800150:CDS
TAGGTATCGATCCAAGCAAA+TGG 0.444365 5_3:+13549988 Msa0800150:intron
TTAGGATCAAATCATATTGA+TGG 0.448278 5_3:-13551900 None:intergenic
TCGGAAAGGACACTTACTAA+TGG 0.460922 5_3:+13551309 Msa0800150:CDS
AAGCATCCATGCCAACCTTA+AGG 0.465093 5_3:-13552470 None:intergenic
TGGTTTAGTGAGTGAGAGAA+TGG 0.469497 5_3:-13552532 None:intergenic
AGAAATAAATGTATATAGAA+AGG 0.471186 5_3:+13552720 Msa0800150:three_prime_UTR
CTTGCACTACAAGGCAATAT+GGG 0.472560 5_3:+13550929 Msa0800150:CDS
ATATGATTGCACTTTGTTGA+AGG 0.476921 5_3:+13552661 Msa0800150:three_prime_UTR
TTTAGCTTTGTTGTCTTCAG+AGG 0.483395 5_3:-13551590 None:intergenic
AGGAAATCAGAGGAAGGAAC+AGG 0.483804 5_3:+13552387 Msa0800150:CDS
CTTCATCACAAGACATTGCA+TGG 0.484352 5_3:-13552440 None:intergenic
CAGGTATTGCTTGCACTACA+AGG 0.486574 5_3:+13550920 Msa0800150:intron
TGATGAAGCCAAATGCCTTA+AGG 0.487966 5_3:+13552455 Msa0800150:CDS
GCCAAAGATGGATGGATATG+AGG 0.491952 5_3:+13552350 Msa0800150:CDS
AGTTCACTAGTATCAGTAAA+CGG 0.492218 5_3:+13552611 Msa0800150:three_prime_UTR
TGGGCTGTTAGAGCAACAAT+TGG 0.493691 5_3:-13552420 None:intergenic
AATGATAAGAAATCACTTGA+GGG 0.496123 5_3:+13551670 Msa0800150:CDS
CCATAAAGACGGAGCTTCGT+CGG 0.496665 5_3:+13551290 Msa0800150:CDS
GTTGTTGTTGCTGTAGGTGA+TGG 0.497897 5_3:+13551769 Msa0800150:CDS
TTCATACCTGACAATCCATT+AGG 0.501681 5_3:-13551918 None:intergenic
TAAGATGGGTGGAGAAATCA+AGG 0.502216 5_3:+13550656 Msa0800150:CDS
GATACTTTGGTTTGAAGTTG+AGG 0.505428 5_3:+13549853 Msa0800150:CDS
GTCTAGGTCTTTGCATCGTT+AGG 0.507867 5_3:+13550357 Msa0800150:CDS
TACTAAGCATCAAAGATATG+AGG 0.509714 5_3:+13551128 Msa0800150:CDS
CTCTTCCAAAATACTTGTGA+AGG 0.511302 5_3:-13551228 None:intergenic
GCTTTAAATTTGACAGACAA+TGG 0.517382 5_3:+13550759 Msa0800150:CDS
TGATACTAGTGAACTCAGTA+AGG 0.519583 5_3:-13552603 None:intergenic
AAGATACACCAGTAATTCAA+AGG 0.521392 5_3:+13551713 Msa0800150:CDS
TTTGTCATCGTTGTTGACAT+TGG 0.524996 5_3:+13551160 Msa0800150:CDS
GAAGTTGAGGACACAGGCTG+TGG 0.528521 5_3:+13549866 Msa0800150:CDS
TTTGCTTCTTAGTGCACCAA+TGG 0.532448 5_3:+13550719 Msa0800150:CDS
AAGACGGAGCTTCGTCGGAA+AGG 0.533943 5_3:+13551295 Msa0800150:CDS
TGGATGGCAGGTTAATAAGA+TGG 0.537101 5_3:+13550641 Msa0800150:intron
GGAGCTGTTGTTGTTGCTGT+AGG 0.539267 5_3:+13551763 Msa0800150:CDS
GGATGGCAGGTTAATAAGAT+GGG 0.539780 5_3:+13550642 Msa0800150:intron
AGGTATCGATCCAAGCAAAT+GGG 0.547486 5_3:+13549989 Msa0800150:intron
TGTTGCTCTGTGACATCCAT+TGG 0.548514 5_3:-13550735 None:intergenic
AATTAGATGCCAAAGATGGA+TGG 0.551523 5_3:+13552342 Msa0800150:intron
GGAAAATTAGATGCCAAAGA+TGG 0.561731 5_3:+13552338 Msa0800150:intron
TAGGGTGACAAGGTCAAGAA+AGG 0.566276 5_3:+13551642 Msa0800150:CDS
GCACAATGGAAGCATCTGAA+TGG 0.570506 5_3:+13550993 Msa0800150:CDS
ATGGAAGCATCTGAATGGAA+TGG 0.570666 5_3:+13550998 Msa0800150:CDS
TGCAACACAAGCTTATGATA+GGG 0.572109 5_3:+13551624 Msa0800150:CDS
AGATACACCAGTAATTCAAA+GGG 0.575176 5_3:+13551714 Msa0800150:CDS
GAATGATAAGAAATCACTTG+AGG 0.584649 5_3:+13551669 Msa0800150:CDS
GAAGCCAAATGCCTTAAGGT+TGG 0.589210 5_3:+13552459 Msa0800150:CDS
TGGCAGGTTAATAAGATGGG+TGG 0.597564 5_3:+13550645 Msa0800150:intron
CACATCAAATACCATAAAGA+CGG 0.600188 5_3:+13551279 Msa0800150:CDS
ATTTGGAAGAAAATAATCCA+AGG 0.600592 5_3:+13551551 Msa0800150:CDS
TGGTTTGAAGTTGAGGACAC+AGG 0.609745 5_3:+13549860 Msa0800150:CDS
TAGAAGAGAGTCTCTCCAGA+AGG 0.615474 5_3:+13551840 Msa0800150:CDS
CAAATGCCTTAAGGTTGGCA+TGG 0.617547 5_3:+13552464 Msa0800150:CDS
AAAAGCAATAAGGAAATCAG+AGG 0.621819 5_3:+13552377 Msa0800150:CDS
TTCATCACAAGACATTGCAT+GGG 0.622262 5_3:-13552439 None:intergenic
GCAATAAGGAAATCAGAGGA+AGG 0.623445 5_3:+13552381 Msa0800150:CDS
TTTGGAAGAAAATAATCCAA+GGG 0.626055 5_3:+13551552 Msa0800150:CDS
TTGGAAGAGCGAAATTTGTG+TGG 0.640386 5_3:+13551242 Msa0800150:CDS
TTTACTTATTTCAGGCATGG+AGG 0.660130 5_3:+13550329 Msa0800150:intron
ATGATAAGAAATCACTTGAG+GGG 0.670799 5_3:+13551671 Msa0800150:CDS
GTAGAATAATAACATCGAAG+TGG 0.676676 5_3:+13550951 Msa0800150:CDS
AGGTGATGGACAACAAGCAG+TGG 0.694466 5_3:+13551783 Msa0800150:CDS
AAGCTTATGATAGGGTGACA+AGG 0.699339 5_3:+13551632 Msa0800150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATACATTTATTTCTATT+AGG - chr5_3:13552717-13552736 None:intergenic 10.0%
!!! TTCATGAAATGTAAATTTTA+AGG - chr5_3:13549898-13549917 None:intergenic 15.0%
!!! ACTTATTTTATTTTGACAAA+AGG - chr5_3:13549927-13549946 None:intergenic 15.0%
!! AGAAATAAATGTATATAGAA+AGG + chr5_3:13552720-13552739 Msa0800150:three_prime_UTR 15.0%
!!! AGATCATACAATTGAAATTT+TGG + chr5_3:13550159-13550178 Msa0800150:intron 20.0%
!!! ATTTTCTGAAGAAGAAAAAA+AGG + chr5_3:13550452-13550471 Msa0800150:intron 20.0%
!! AAAAAAATTCACATTTCCTT+TGG + chr5_3:13550492-13550511 Msa0800150:intron 20.0%
!!! TAAGTTCCTTTTATTTTTGT+TGG + chr5_3:13550621-13550640 Msa0800150:intron 20.0%
!! GAAATTTAAGGATAACAAAT+AGG + chr5_3:13550874-13550893 Msa0800150:intron 20.0%
!! TTAAATCCTTCAAGATTTAT+TGG - chr5_3:13551100-13551119 None:intergenic 20.0%
!!! AGCAAAAATGATTCATATTT+TGG + chr5_3:13551351-13551370 Msa0800150:CDS 20.0%
!! AACAATAATGCTTGAAAAAA+TGG + chr5_3:13551741-13551760 Msa0800150:CDS 20.0%
!! ACAATAATGCTTGAAAAAAT+GGG + chr5_3:13551742-13551761 Msa0800150:CDS 20.0%
!! TTTGGATAAATAGTTTAATC+AGG + chr5_3:13552033-13552052 Msa0800150:intron 20.0%
!! ATATAAAATTACACTTGTGT+TGG + chr5_3:13552081-13552100 Msa0800150:intron 20.0%
!!! AAGTCAAATTATTTTCATAC+AGG + chr5_3:13552218-13552237 Msa0800150:intron 20.0%
!! ATATCTAATAAGTGAATATC+AGG + chr5_3:13552284-13552303 Msa0800150:intron 20.0%
!! TTCTATTAGGTTTATAGTTA+TGG - chr5_3:13552704-13552723 None:intergenic 20.0%
! AAACAAATGTGATTTATTCG+TGG - chr5_3:13549950-13549969 None:intergenic 25.0%
! TTTGTTTATTTCCTATGTTG+TGG + chr5_3:13549963-13549982 Msa0800150:intron 25.0%
! ATGTATATAGTCAATGATCT+CGG + chr5_3:13550126-13550145 Msa0800150:intron 25.0%
! GTAAGAAAAAACAAACATTG+AGG - chr5_3:13550278-13550297 None:intergenic 25.0%
!!! TTCCTTTTATTTTTGTTGGA+TGG + chr5_3:13550625-13550644 Msa0800150:intron 25.0%
! CTAAAAGCAAGAGAAATTTA+AGG + chr5_3:13550862-13550881 Msa0800150:intron 25.0%
!!! ATCATTTTTGCTTTGTATAG+AGG - chr5_3:13551343-13551362 None:intergenic 25.0%
! CAAAAGAAAAACATGAAAGA+GGG + chr5_3:13551406-13551425 Msa0800150:CDS 25.0%
!!! TCATCGGTTAACTTTAAAAT+TGG - chr5_3:13551523-13551542 None:intergenic 25.0%
!! TTCCAAATGTTCATTTTCAT+CGG - chr5_3:13551539-13551558 None:intergenic 25.0%
! ATTTGGAAGAAAATAATCCA+AGG + chr5_3:13551551-13551570 Msa0800150:CDS 25.0%
! TTTGGAAGAAAATAATCCAA+GGG + chr5_3:13551552-13551571 Msa0800150:CDS 25.0%
! AATGATAAGAAATCACTTGA+GGG + chr5_3:13551670-13551689 Msa0800150:CDS 25.0%
! TTAGGATCAAATCATATTGA+TGG - chr5_3:13551903-13551922 None:intergenic 25.0%
! TCAATATGATTTGATCCTAA+TGG + chr5_3:13551903-13551922 Msa0800150:CDS 25.0%
! GATATAAAAAAGCTACCTAT+TGG - chr5_3:13552269-13552288 None:intergenic 25.0%
! TTACAACTATGTACATTTCT+AGG - chr5_3:13552562-13552581 None:intergenic 25.0%
GAGATAACAAAGTGATACTT+TGG + chr5_3:13549840-13549859 Msa0800150:CDS 30.0%
TATTTCCTATGTTGTGGTAT+AGG + chr5_3:13549969-13549988 Msa0800150:intron 30.0%
CTGAATCCTTTACTTATTTC+AGG + chr5_3:13550321-13550340 Msa0800150:intron 30.0%
! TTTTAGACCTAGTTTACCAA+AGG - chr5_3:13550511-13550530 None:intergenic 30.0%
!!! TGATTGTGTGATTGTTTTTG+AGG + chr5_3:13550583-13550602 Msa0800150:intron 30.0%
TGCCATCCAACAAAAATAAA+AGG - chr5_3:13550630-13550649 None:intergenic 30.0%
!!! TTTTATTTTTGTTGGATGGC+AGG + chr5_3:13550629-13550648 Msa0800150:intron 30.0%
AGAAATCAAGGTTACCAAAA+AGG + chr5_3:13550668-13550687 Msa0800150:CDS 30.0%
! GCTTTAAATTTGACAGACAA+TGG + chr5_3:13550759-13550778 Msa0800150:CDS 30.0%
TAAATACTAAGTGTGAATGC+AGG + chr5_3:13550901-13550920 Msa0800150:intron 30.0%
GTAGAATAATAACATCGAAG+TGG + chr5_3:13550951-13550970 Msa0800150:CDS 30.0%
!! ATGGACTAACACAAATTTTG+AGG + chr5_3:13551017-13551036 Msa0800150:CDS 30.0%
! TGGACTAACACAAATTTTGA+GGG + chr5_3:13551018-13551037 Msa0800150:CDS 30.0%
CACTATCCAATAAATCTTGA+AGG + chr5_3:13551091-13551110 Msa0800150:CDS 30.0%
TACTAAGCATCAAAGATATG+AGG + chr5_3:13551128-13551147 Msa0800150:CDS 30.0%
TCAACAACGATGACAAAAAT+TGG - chr5_3:13551157-13551176 None:intergenic 30.0%
TTGACTTAAGCACAGATATA+TGG + chr5_3:13551188-13551207 Msa0800150:CDS 30.0%
! AACTTCCTTCACAAGTATTT+TGG + chr5_3:13551223-13551242 Msa0800150:CDS 30.0%
CACATCAAATACCATAAAGA+CGG + chr5_3:13551279-13551298 Msa0800150:CDS 30.0%
GCAAAAGAAAAACATGAAAG+AGG + chr5_3:13551405-13551424 Msa0800150:CDS 30.0%
AACCGATGAAAATGAACATT+TGG + chr5_3:13551534-13551553 Msa0800150:CDS 30.0%
GAATGATAAGAAATCACTTG+AGG + chr5_3:13551669-13551688 Msa0800150:CDS 30.0%
ATGATAAGAAATCACTTGAG+GGG + chr5_3:13551671-13551690 Msa0800150:CDS 30.0%
AAGATACACCAGTAATTCAA+AGG + chr5_3:13551713-13551732 Msa0800150:CDS 30.0%
AGATACACCAGTAATTCAAA+GGG + chr5_3:13551714-13551733 Msa0800150:CDS 30.0%
AGTGGATGCTCTTAATTATA+TGG + chr5_3:13551801-13551820 Msa0800150:CDS 30.0%
!! ATCTTGTATTTTTGTCCTTC+TGG - chr5_3:13551858-13551877 None:intergenic 30.0%
TGAACCAGAATAACAGTATT+AGG + chr5_3:13551937-13551956 Msa0800150:intron 30.0%
AAGTCCTAATACTGTTATTC+TGG - chr5_3:13551944-13551963 None:intergenic 30.0%
CTTGTGAAATTGTTTGACAT+AGG + chr5_3:13552005-13552024 Msa0800150:intron 30.0%
! TTATCAAGTATTGCTCCAAT+AGG + chr5_3:13552251-13552270 Msa0800150:intron 30.0%
TAATGCTTTATCTGTGTTTG+TGG + chr5_3:13552317-13552336 Msa0800150:intron 30.0%
AAAAGCAATAAGGAAATCAG+AGG + chr5_3:13552377-13552396 Msa0800150:CDS 30.0%
! TATGTACATTTCTAGGTTGT+TGG - chr5_3:13552555-13552574 None:intergenic 30.0%
AGTTCACTAGTATCAGTAAA+CGG + chr5_3:13552611-13552630 Msa0800150:three_prime_UTR 30.0%
ATATGATTGCACTTTGTTGA+AGG + chr5_3:13552661-13552680 Msa0800150:three_prime_UTR 30.0%
!! GATACTTTGGTTTGAAGTTG+AGG + chr5_3:13549853-13549872 Msa0800150:CDS 35.0%
ATTTCTACAGTCATTGCAGT+CGG - chr5_3:13550248-13550267 None:intergenic 35.0%
TCCTTTACTTATTTCAGGCA+TGG + chr5_3:13550326-13550345 Msa0800150:intron 35.0%
TCCATGCCTGAAATAAGTAA+AGG - chr5_3:13550330-13550349 None:intergenic 35.0%
TTTACTTATTTCAGGCATGG+AGG + chr5_3:13550329-13550348 Msa0800150:intron 35.0%
CACATTTCCTTTGGTAAACT+AGG + chr5_3:13550501-13550520 Msa0800150:intron 35.0%
AATCAAGGTTACCAAAAAGG+AGG + chr5_3:13550671-13550690 Msa0800150:CDS 35.0%
ATCAAGGTTACCAAAAAGGA+GGG + chr5_3:13550672-13550691 Msa0800150:CDS 35.0%
TCGAAGTGGTTAACCAAAAA+AGG + chr5_3:13550965-13550984 Msa0800150:CDS 35.0%
CGAAGTGGTTAACCAAAAAA+GGG + chr5_3:13550966-13550985 Msa0800150:CDS 35.0%
GAAGTGGTTAACCAAAAAAG+GGG + chr5_3:13550967-13550986 Msa0800150:CDS 35.0%
TTTGTCATCGTTGTTGACAT+TGG + chr5_3:13551160-13551179 Msa0800150:CDS 35.0%
CTCTTCCAAAATACTTGTGA+AGG - chr5_3:13551231-13551250 None:intergenic 35.0%
!! TTTAGCTTTGTTGTCTTCAG+AGG - chr5_3:13551593-13551612 None:intergenic 35.0%
TTGCAACACAAGCTTATGAT+AGG + chr5_3:13551623-13551642 Msa0800150:CDS 35.0%
TGCAACACAAGCTTATGATA+GGG + chr5_3:13551624-13551643 Msa0800150:CDS 35.0%
!! TTTGATCCTAATGGATTGTC+AGG + chr5_3:13551912-13551931 Msa0800150:CDS 35.0%
TTCATACCTGACAATCCATT+AGG - chr5_3:13551921-13551940 None:intergenic 35.0%
ACGCATTTGAGCTTATTTAC+TGG + chr5_3:13551974-13551993 Msa0800150:intron 35.0%
TGTTTGACATAGGTCATGTT+TGG + chr5_3:13552015-13552034 Msa0800150:intron 35.0%
! AAAATTACACTTGTGTTGGC+CGG + chr5_3:13552085-13552104 Msa0800150:intron 35.0%
GGAAAATTAGATGCCAAAGA+TGG + chr5_3:13552338-13552357 Msa0800150:intron 35.0%
AATTAGATGCCAAAGATGGA+TGG + chr5_3:13552342-13552361 Msa0800150:intron 35.0%
ATGAGGCAACAAAAGCAATA+AGG + chr5_3:13552367-13552386 Msa0800150:CDS 35.0%
TTCATCACAAGACATTGCAT+GGG - chr5_3:13552442-13552461 None:intergenic 35.0%
ACCATAAGCTTGAAGTCAAT+TGG - chr5_3:13552507-13552526 None:intergenic 35.0%
TGATACTAGTGAACTCAGTA+AGG - chr5_3:13552606-13552625 None:intergenic 35.0%
CGATACCTATACCACAACAT+AGG - chr5_3:13549977-13549996 None:intergenic 40.0%
!! TAGGTATCGATCCAAGCAAA+TGG + chr5_3:13549988-13550007 Msa0800150:intron 40.0%
!! AGGTATCGATCCAAGCAAAT+GGG + chr5_3:13549989-13550008 Msa0800150:intron 40.0%
AACACAGAATCCCATTTGCT+TGG - chr5_3:13550002-13550021 None:intergenic 40.0%
GCTTACAGTCTAGTAGTTGA+TGG - chr5_3:13550047-13550066 None:intergenic 40.0%
TCTTTGCATCGTTAGGAACT+TGG + chr5_3:13550364-13550383 Msa0800150:CDS 40.0%
TTGGACTGTAGGATCAACAT+CGG - chr5_3:13550550-13550569 None:intergenic 40.0%
GTTGATCCTACAGTCCAAAT+CGG + chr5_3:13550552-13550571 Msa0800150:intron 40.0%
TTGATCCTACAGTCCAAATC+GGG + chr5_3:13550553-13550572 Msa0800150:intron 40.0%
TGGATGGCAGGTTAATAAGA+TGG + chr5_3:13550641-13550660 Msa0800150:intron 40.0%
GGATGGCAGGTTAATAAGAT+GGG + chr5_3:13550642-13550661 Msa0800150:intron 40.0%
TAAGATGGGTGGAGAAATCA+AGG + chr5_3:13550656-13550675 Msa0800150:CDS 40.0%
TTTGCTTCTTAGTGCACCAA+TGG + chr5_3:13550719-13550738 Msa0800150:CDS 40.0%
TTTGACAGACAATGGCTTAG+TGG + chr5_3:13550767-13550786 Msa0800150:CDS 40.0%
CTTGCACTACAAGGCAATAT+GGG + chr5_3:13550929-13550948 Msa0800150:CDS 40.0%
!! ATGGAAGCATCTGAATGGAA+TGG + chr5_3:13550998-13551017 Msa0800150:CDS 40.0%
TTGGAAGAGCGAAATTTGTG+TGG + chr5_3:13551242-13551261 Msa0800150:CDS 40.0%
TCGGAAAGGACACTTACTAA+TGG + chr5_3:13551309-13551328 Msa0800150:CDS 40.0%
GTACAAGATTCTTCTTCCCT+TGG - chr5_3:13551571-13551590 None:intergenic 40.0%
AAGCTTATGATAGGGTGACA+AGG + chr5_3:13551632-13551651 Msa0800150:CDS 40.0%
AGAAATCACTTGAGGGGTTA+AGG + chr5_3:13551677-13551696 Msa0800150:CDS 40.0%
GTTGCAACCCTTTGAATTAC+TGG - chr5_3:13551724-13551743 None:intergenic 40.0%
! CTTTAGAGAAGCACACTTCA+AGG - chr5_3:13552129-13552148 None:intergenic 40.0%
CTTGAAGTGTGCTTCTCTAA+AGG + chr5_3:13552127-13552146 Msa0800150:intron 40.0%
CTAAACTAGCCCACTGAAAT+AGG - chr5_3:13552177-13552196 None:intergenic 40.0%
GCAATAAGGAAATCAGAGGA+AGG + chr5_3:13552381-13552400 Msa0800150:CDS 40.0%
CTTCATCACAAGACATTGCA+TGG - chr5_3:13552443-13552462 None:intergenic 40.0%
TGATGAAGCCAAATGCCTTA+AGG + chr5_3:13552455-13552474 Msa0800150:CDS 40.0%
! GCCAATTGACTTCAAGCTTA+TGG + chr5_3:13552503-13552522 Msa0800150:CDS 40.0%
TGGTTTAGTGAGTGAGAGAA+TGG - chr5_3:13552535-13552554 None:intergenic 40.0%
! TGGTTTGAAGTTGAGGACAC+AGG + chr5_3:13549860-13549879 Msa0800150:CDS 45.0%
AGTCGGCTGATCTAAATCGT+TGG - chr5_3:13550231-13550250 None:intergenic 45.0%
! TATTTCAGGCATGGAGGTAC+TGG + chr5_3:13550335-13550354 Msa0800150:intron 45.0%
GTCTAGGTCTTTGCATCGTT+AGG + chr5_3:13550357-13550376 Msa0800150:CDS 45.0%
TGGACTGTAGGATCAACATC+GGG - chr5_3:13550549-13550568 None:intergenic 45.0%
TGATCCTACAGTCCAAATCG+GGG + chr5_3:13550554-13550573 Msa0800150:intron 45.0%
CAATCACACATTCCCCGATT+TGG - chr5_3:13550569-13550588 None:intergenic 45.0%
TGGCAGGTTAATAAGATGGG+TGG + chr5_3:13550645-13550664 Msa0800150:intron 45.0%
GTTACCAAAAAGGAGGGTCA+GGG + chr5_3:13550678-13550697 Msa0800150:CDS 45.0%
TGTTGCTCTGTGACATCCAT+TGG - chr5_3:13550738-13550757 None:intergenic 45.0%
! CAGGTATTGCTTGCACTACA+AGG + chr5_3:13550920-13550939 Msa0800150:intron 45.0%
GCTTGCACTACAAGGCAATA+TGG + chr5_3:13550928-13550947 Msa0800150:CDS 45.0%
!!! CATTGTGCACACCCCTTTTT+TGG - chr5_3:13550981-13551000 None:intergenic 45.0%
! CAAAAAAGGGGTGTGCACAA+TGG + chr5_3:13550979-13550998 Msa0800150:CDS 45.0%
!! GCACAATGGAAGCATCTGAA+TGG + chr5_3:13550993-13551012 Msa0800150:CDS 45.0%
TAGGGTGACAAGGTCAAGAA+AGG + chr5_3:13551642-13551661 Msa0800150:CDS 45.0%
! GTTGTTGTTGCTGTAGGTGA+TGG + chr5_3:13551769-13551788 Msa0800150:CDS 45.0%
TAGAAGAGAGTCTCTCCAGA+AGG + chr5_3:13551840-13551859 Msa0800150:CDS 45.0%
! TGTGCTTCTCTAAAGGTCTC+AGG + chr5_3:13552134-13552153 Msa0800150:intron 45.0%
GCCAAAGATGGATGGATATG+AGG + chr5_3:13552350-13552369 Msa0800150:CDS 45.0%
GCCTCATATCCATCCATCTT+TGG - chr5_3:13552354-13552373 None:intergenic 45.0%
AGGAAATCAGAGGAAGGAAC+AGG + chr5_3:13552387-13552406 Msa0800150:CDS 45.0%
TGGGCTGTTAGAGCAACAAT+TGG - chr5_3:13552423-13552442 None:intergenic 45.0%
GAAGCCAAATGCCTTAAGGT+TGG + chr5_3:13552459-13552478 Msa0800150:CDS 45.0%
! CATGCCAACCTTAAGGCATT+TGG - chr5_3:13552466-13552485 None:intergenic 45.0%
CAAATGCCTTAAGGTTGGCA+TGG + chr5_3:13552464-13552483 Msa0800150:CDS 45.0%
AAGCATCCATGCCAACCTTA+AGG - chr5_3:13552473-13552492 None:intergenic 45.0%
ACTGTAGGATCAACATCGGG+CGG - chr5_3:13550546-13550565 None:intergenic 50.0%
!! CATTCCCCGATTTGGACTGT+AGG - chr5_3:13550561-13550580 None:intergenic 50.0%
GGTTACCAAAAAGGAGGGTC+AGG + chr5_3:13550677-13550696 Msa0800150:CDS 50.0%
! TGTTCCCTGACCCTCCTTTT+TGG - chr5_3:13550685-13550704 None:intergenic 50.0%
CCATAAAGACGGAGCTTCGT+CGG + chr5_3:13551290-13551309 Msa0800150:CDS 50.0%
! GGAGCTGTTGTTGTTGCTGT+AGG + chr5_3:13551763-13551782 Msa0800150:CDS 50.0%
!! AGGTGATGGACAACAAGCAG+TGG + chr5_3:13551783-13551802 Msa0800150:CDS 50.0%
! ATTACACTTGTGTTGGCCGG+TGG + chr5_3:13552088-13552107 Msa0800150:intron 50.0%
TAGCCCACTGAAATAGGCAC+CGG - chr5_3:13552171-13552190 None:intergenic 50.0%
GAAGTTGAGGACACAGGCTG+TGG + chr5_3:13549866-13549885 Msa0800150:CDS 55.0%
!! AGGCATGGAGGTACTGGTCT+AGG + chr5_3:13550341-13550360 Msa0800150:intron 55.0%
CCGACGAAGCTCCGTCTTTA+TGG - chr5_3:13551293-13551312 None:intergenic 55.0%
AAGACGGAGCTTCGTCGGAA+AGG + chr5_3:13551295-13551314 Msa0800150:CDS 55.0%
GTCTCTCAAGCCAACACCAC+CGG - chr5_3:13552107-13552126 None:intergenic 55.0%
GTCTCAGGCTCAATTCTCCC+CGG + chr5_3:13552149-13552168 Msa0800150:intron 55.0%
TCCCCGGTGCCTATTTCAGT+GGG + chr5_3:13552165-13552184 Msa0800150:intron 55.0%
AGCCCACTGAAATAGGCACC+GGG - chr5_3:13552170-13552189 None:intergenic 55.0%
! CTTGTGTTGGCCGGTGGTGT+TGG + chr5_3:13552094-13552113 Msa0800150:intron 60.0%
CTCCCCGGTGCCTATTTCAG+TGG + chr5_3:13552164-13552183 Msa0800150:intron 60.0%
! GCCCACTGAAATAGGCACCG+GGG - chr5_3:13552169-13552188 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 13549836 13552758 13549836 ID=Msa0800150;Name=Msa0800150
chr5_3 mRNA 13549836 13552758 13549836 ID=Msa0800150-mRNA-1;Parent=Msa0800150;Name=Msa0800150-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.4|0.16|0.5|1|1|6|195|509
chr5_3 exon 13549836 13549887 13549836 ID=Msa0800150-mRNA-1:exon:5541;Parent=Msa0800150-mRNA-1
chr5_3 exon 13549991 13550060 13549991 ID=Msa0800150-mRNA-1:exon:5542;Parent=Msa0800150-mRNA-1
chr5_3 exon 13550343 13550385 13550343 ID=Msa0800150-mRNA-1:exon:5543;Parent=Msa0800150-mRNA-1
chr5_3 exon 13550651 13550788 13550651 ID=Msa0800150-mRNA-1:exon:5544;Parent=Msa0800150-mRNA-1
chr5_3 exon 13550923 13551933 13550923 ID=Msa0800150-mRNA-1:exon:5545;Parent=Msa0800150-mRNA-1
chr5_3 exon 13552348 13552758 13552348 ID=Msa0800150-mRNA-1:exon:5546;Parent=Msa0800150-mRNA-1
chr5_3 CDS 13549836 13549887 13549836 ID=Msa0800150-mRNA-1:cds;Parent=Msa0800150-mRNA-1
chr5_3 CDS 13549991 13550060 13549991 ID=Msa0800150-mRNA-1:cds;Parent=Msa0800150-mRNA-1
chr5_3 CDS 13550343 13550385 13550343 ID=Msa0800150-mRNA-1:cds;Parent=Msa0800150-mRNA-1
chr5_3 CDS 13550651 13550788 13550651 ID=Msa0800150-mRNA-1:cds;Parent=Msa0800150-mRNA-1
chr5_3 CDS 13550923 13551933 13550923 ID=Msa0800150-mRNA-1:cds;Parent=Msa0800150-mRNA-1
chr5_3 CDS 13552348 13552563 13552348 ID=Msa0800150-mRNA-1:cds;Parent=Msa0800150-mRNA-1
chr5_3 three_prime_UTR 13552564 13552758 13552564 ID=Msa0800150-mRNA-1:three_prime_utr;Parent=Msa0800150-mRNA-1
Gene Sequence

>Msa0800150

ATGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATCGATCCAAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGTACTGGTCTAGGTCTTTGCATCGTTAGGAACTTGGTTAATAAGATGGGTGGAGAAATCAAGGTTACCAAAAAGGAGGGTCAGGGAACATTGATGAGATTATGTTTGCTTCTTAGTGCACCAATGGATGTCACAGAGCAACATGCTTTAAATTTGACAGACAATGGCTTAGTGGTATTGCTTGCACTACAAGGCAATATGGGTAGAATAATAACATCGAAGTGGTTAACCAAAAAAGGGGTGTGCACAATGGAAGCATCTGAATGGAATGGACTAACACAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAATGCATAACAATAACAACTTTGATGCACACTATCCAATAAATCTTGAAGGATTTAAGTCTAAACTACTAAGCATCAAAGATATGAGGAATCCAATTTTTGTCATCGTTGTTGACATTGGTTTGCTTGACTTAAGCACAGATATATGGAAAGAACAACTTAACTTCCTTCACAAGTATTTTGGAAGAGCGAAATTTGTGTGGATGCTGAATCATGACACATCAAATACCATAAAGACGGAGCTTCGTCGGAAAGGACACTTACTAATGGTTAACAAACCTCTATACAAAGCAAAAATGATTCATATTTTGGAAGCTGTTATAAAAGAGAGAAATCTTGAGTTGCAAAAGAAAAACATGAAAGAGGGTGATTTGCATGAGTTTCTTGAGATTGATTCTACTCAATTTGAAGCTGCTACTAGCTCTGATGATTCTGATATATCTGAAATTAGTCAAAAACCAATTTTAAAGTTAACCGATGAAAATGAACATTTGGAAGAAAATAATCCAAGGGAAGAAGAATCTTGTACCTCTGAAGACAACAAAGCTAAAGAAACAAACTTTGCAACACAAGCTTATGATAGGGTGACAAGGTCAAGAAAGGAAGTGAATGATAAGAAATCACTTGAGGGGTTAAGGATTTTGCTTGCAGAAGATACACCAGTAATTCAAAGGGTTGCAACAATAATGCTTGAAAAAATGGGAGCTGTTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTGGATGCTCTTAATTATATGGTAAGTGCTGAAGATTGTAGAAGAGAGTCTCTCCAGAAGGACAAAAATACAAGATCACAAACAGAAATTTTGACTTGCCATCAATATGATTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAGGCAACAAAAGCAATAAGGAAATCAGAGGAAGGAACAGGCAAACACATTCCAATTGTTGCTCTAACAGCCCATGCAATGTCTTGTGATGAAGCCAAATGCCTTAAGGTTGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCTTATGGTCTCAACCATTCTCTCACTCACTAAACCAACAACCTAG

Protein sequence

>Msa0800150

MRDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVTKKEGQGTLMRLCLLLSAPMDVTEQHALNLTDNGLVVLLALQGNMGRIITSKWLTKKGVCTMEASEWNGLTQILRELFHARSSMHNNNNFDAHYPINLEGFKSKLLSIKDMRNPIFVIVVDIGLLDLSTDIWKEQLNFLHKYFGRAKFVWMLNHDTSNTIKTELRRKGHLLMVNKPLYKAKMIHILEAVIKERNLELQKKNMKEGDLHEFLEIDSTQFEAATSSDDSDISEISQKPILKLTDENEHLEENNPREEESCTSEDNKAKETNFATQAYDRVTRSRKEVNDKKSLEGLRILLAEDTPVIQRVATIMLEKMGAVVVAVGDGQQAVDALNYMVSAEDCRRESLQKDKNTRSQTEILTCHQYDLILMDCQMPKMDGYEATKAIRKSEEGTGKHIPIVALTAHAMSCDEAKCLKVGMDAYLTKPIDFKLMVSTILSLTKPTT*