AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0682910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682910 MtrunA17_Chr4g0029341 93.119 218 15 0 1 218 1 218 4.55e-152 421
Msa0682910 MtrunA17_Chr1g0196661 68.372 215 68 0 4 218 3 217 1.74e-111 318
Msa0682910 MtrunA17_Chr1g0196721 67.290 214 70 0 5 218 3 216 2.31e-106 305
Msa0682910 MtrunA17_Chr1g0196711 65.581 215 74 0 4 218 3 217 3.19e-102 295
Msa0682910 MtrunA17_Chr1g0196691 63.426 216 78 1 4 218 28 243 5.37e-102 295
Msa0682910 MtrunA17_Chr1g0212301 48.837 215 106 3 1 213 1 213 2.30e-66 204
Msa0682910 MtrunA17_Chr1g0196771 47.867 211 109 1 3 213 2 211 4.35e-66 203
Msa0682910 MtrunA17_Chr4g0008791 45.755 212 111 2 4 214 7 215 1.60e-62 194
Msa0682910 MtrunA17_Chr4g0008781 46.083 217 113 3 3 218 7 220 5.55e-61 190
Msa0682910 MtrunA17_Chr7g0240641 46.948 213 109 2 3 214 6 215 5.12e-60 187
Msa0682910 MtrunA17_Chr7g0240691 44.393 214 114 2 3 214 36 246 1.20e-58 185
Msa0682910 MtrunA17_Chr7g0240631 45.070 213 113 2 3 214 6 215 1.75e-58 184
Msa0682910 MtrunA17_Chr7g0240511 45.370 216 109 3 3 217 6 213 2.84e-58 183
Msa0682910 MtrunA17_Chr5g0417011 44.545 220 116 4 2 216 5 223 1.94e-57 181
Msa0682910 MtrunA17_Chr7g0240681 44.393 214 114 2 3 214 6 216 2.74e-57 181
Msa0682910 MtrunA17_Chr3g0132581 45.070 213 113 3 3 214 4 213 2.42e-56 178
Msa0682910 MtrunA17_Chr7g0240561 42.523 214 117 3 3 214 6 215 5.89e-56 177
Msa0682910 MtrunA17_Chr8g0379581 44.651 215 113 2 2 214 3 213 5.64e-55 175
Msa0682910 MtrunA17_Chr8g0379561 47.085 223 107 6 1 218 2 218 2.09e-53 171
Msa0682910 MtrunA17_Chr2g0312771 44.091 220 116 4 1 218 1 215 6.15e-53 169
Msa0682910 MtrunA17_Chr2g0312721 42.723 213 117 3 1 212 1 209 6.43e-53 169
Msa0682910 MtrunA17_Chr7g0240581 39.906 213 124 2 3 214 6 215 5.14e-52 167
Msa0682910 MtrunA17_Chr2g0312751 44.393 214 112 4 1 212 1 209 5.88e-52 167
Msa0682910 MtrunA17_Chr7g0240541 42.056 214 118 4 3 214 6 215 6.67e-52 167
Msa0682910 MtrunA17_Chr8g0363751 43.578 218 115 6 5 215 6 222 8.94e-51 164
Msa0682910 MtrunA17_Chr7g0240611 40.376 213 119 3 3 214 6 211 2.14e-50 163
Msa0682910 MtrunA17_Chr7g0240551 40.376 213 123 2 3 214 6 215 2.63e-50 163
Msa0682910 MtrunA17_Chr6g0483141 43.434 198 106 3 18 213 17 210 3.58e-50 162
Msa0682910 MtrunA17_Chr7g0240671 41.395 215 116 4 1 213 1 207 5.18e-50 162
Msa0682910 MtrunA17_Chr7g0240531 40.845 213 122 2 3 214 6 215 2.30e-49 160
Msa0682910 MtrunA17_Chr2g0312791 42.793 222 118 6 1 218 1 217 2.95e-49 160
Msa0682910 MtrunA17_Chr7g0240661 42.056 214 116 3 1 213 4 210 5.55e-49 159
Msa0682910 MtrunA17_Chr2g0312731 40.670 209 119 3 1 208 1 205 4.97e-48 157
Msa0682910 MtrunA17_Chr2g0312781 42.381 210 114 4 1 208 18 222 1.31e-47 156
Msa0682910 MtrunA17_Chr7g0240521 43.256 215 115 5 3 214 13 223 1.91e-47 155
Msa0682910 MtrunA17_Chr2g0312811 40.741 216 119 5 1 212 1 211 1.19e-46 153
Msa0682910 MtrunA17_Chr7g0240651 39.906 213 120 3 3 214 6 211 9.91e-45 148
Msa0682910 MtrunA17_Chr8g0357241 39.906 213 123 3 1 212 1 209 1.49e-44 148
Msa0682910 MtrunA17_Chr3g0107731 40.476 210 120 3 10 218 15 220 1.05e-43 146
Msa0682910 MtrunA17_Chr8g0357211 39.437 213 124 3 1 212 1 209 1.47e-43 145
Msa0682910 MtrunA17_Chr5g0415411 38.222 225 130 4 3 218 4 228 2.65e-43 145
Msa0682910 MtrunA17_Chr3g0107741 39.631 217 126 3 3 218 8 220 1.36e-42 143
Msa0682910 MtrunA17_Chr2g0312681 38.426 216 128 3 1 215 1 212 2.29e-42 142
Msa0682910 MtrunA17_Chr2g0312691 40.376 213 122 3 1 212 1 209 5.79e-42 141
Msa0682910 MtrunA17_Chr4g0069471 45.506 178 93 3 1 176 22 197 5.81e-42 141
Msa0682910 MtrunA17_Chr2g0312711 41.232 211 114 5 1 208 1 204 2.30e-40 137
Msa0682910 MtrunA17_Chr5g0433801 36.321 212 130 3 2 212 4 211 1.22e-37 130
Msa0682910 MtrunA17_Chr8g0391631 44.025 159 80 7 1 152 19 175 1.41e-35 124
Msa0682910 MtrunA17_Chr2g0313561 60.714 56 21 1 48 102 2 57 2.34e-19 79.0
Msa0682910 MtrunA17_Chr5g0415421 44.595 74 38 1 28 98 11 84 8.29e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0682910 AT3G09270.1 45.581 215 113 3 3 215 5 217 7.10e-59 185
Msa0682910 AT2G29450.1 43.578 218 119 3 3 218 5 220 3.30e-56 178
Msa0682910 AT2G29460.1 43.318 217 120 2 3 218 6 220 6.33e-56 177
Msa0682910 AT2G29490.1 43.981 216 118 2 3 217 6 219 1.56e-55 176
Msa0682910 AT1G10370.1 43.694 222 120 3 2 218 3 224 2.91e-55 176
Msa0682910 AT2G29470.1 42.661 218 121 3 3 218 6 221 1.01e-54 174
Msa0682910 AT2G29420.1 40.092 217 128 1 2 218 7 221 3.13e-54 173
Msa0682910 AT2G29480.1 43.779 217 119 2 3 218 6 220 7.27e-54 172
Msa0682910 AT1G17180.1 41.096 219 124 3 1 218 1 215 4.90e-49 160
Msa0682910 AT2G29440.1 40.092 217 127 2 3 218 5 219 1.62e-48 159
Msa0682910 AT1G78340.1 41.981 212 118 3 1 211 1 208 3.09e-48 157
Msa0682910 AT1G10360.1 41.176 221 125 3 3 218 4 224 4.81e-48 157
Msa0682910 AT1G27130.1 40.553 217 123 4 3 213 5 221 8.18e-48 157
Msa0682910 AT1G74590.1 39.269 219 130 2 3 218 6 224 3.89e-47 155
Msa0682910 AT1G78320.1 40.566 212 117 6 1 209 1 206 6.30e-46 152
Msa0682910 AT1G78370.1 39.623 212 123 3 1 211 1 208 1.13e-45 151
Msa0682910 AT5G62480.1 36.404 228 130 5 1 217 5 228 1.74e-45 151
Msa0682910 AT1G69930.1 37.674 215 130 3 3 213 11 225 4.39e-45 150
Msa0682910 AT1G59670.1 39.631 217 125 4 3 213 5 221 1.06e-44 149
Msa0682910 AT1G27140.1 39.910 223 127 4 3 218 5 227 1.06e-44 149
Msa0682910 AT1G78380.1 39.726 219 127 3 1 218 1 215 1.09e-43 146
Msa0682910 AT1G17170.1 39.906 213 122 4 1 212 1 208 4.31e-43 144
Msa0682910 AT1G59700.1 37.327 217 130 4 3 213 5 221 3.04e-42 143
Msa0682910 AT1G17190.1 35.945 217 134 3 3 218 4 216 2.61e-41 140
Msa0682910 AT1G69920.1 35.814 215 132 4 5 213 35 249 2.16e-38 134
Msa0682910 AT1G78360.1 37.383 214 128 4 1 212 1 210 2.66e-38 132
Msa0682910 AT1G53680.1 38.119 202 118 4 10 208 13 210 6.15e-38 131
Msa0682910 AT3G43800.1 38.182 220 127 5 3 217 4 219 2.47e-37 130
Msa0682910 AT5G62480.3 30.222 225 117 5 3 217 7 201 2.43e-29 109
Msa0682910 AT5G62480.2 30.222 225 118 5 3 217 7 202 3.14e-29 108
Msa0682910 AT1G78320.2 32.701 211 108 6 1 209 1 179 2.32e-27 103
Msa0682910 AT2G02390.1 26.852 216 137 6 3 206 7 213 3.58e-11 60.8

Find 50 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGCCCAAGCTCGGTTC+TGG 0.280479 4_4:+44949111 Msa0682910:CDS
AGGAGACACCGTTAACATTC+TGG 0.299490 4_4:+44949567 Msa0682910:CDS
AAGTGAAGCTACATGGATTT+TGG 0.302285 4_4:+44948853 Msa0682910:CDS
AATACTACCCTCAAAGTAAA+AGG 0.302524 4_4:-44948882 None:intergenic
TGTCATACAAAAGTAGTTAT+AGG 0.314540 4_4:+44949768 Msa0682910:exon
ATACAAGCTACCCCTTTCTT+AGG 0.317809 4_4:-44949798 None:intergenic
AGAATACCATAGCGAAAATC+TGG 0.331408 4_4:+44949488 Msa0682910:CDS
GTATTGACCCTTAAGCTAAA+AGG 0.363440 4_4:+44948900 Msa0682910:CDS
TATGTTACCAACCTAGGGTT+GGG 0.382533 4_4:+44949872 Msa0682910:three_prime_UTR
TTGAATATATTGATGAGATA+TGG 0.397859 4_4:+44949054 Msa0682910:CDS
GTCATACAAAAGTAGTTATA+GGG 0.403210 4_4:+44949769 Msa0682910:exon
TCTTCTTCTATGTTCTCATA+TGG 0.416671 4_4:-44948927 None:intergenic
AACATTCTGGACATAGCTCT+TGG 0.422694 4_4:+44949580 Msa0682910:CDS
AAAACTCCGGTGTTGGTTCA+TGG 0.434187 4_4:+44948999 Msa0682910:CDS
CTTCTTTATGTTACCAACCT+AGG 0.434614 4_4:+44949866 Msa0682910:three_prime_UTR
AGCTATGTCCAGAATGTTAA+CGG 0.440075 4_4:-44949575 None:intergenic
GCTATCAGTTTCTCATGATC+AGG 0.440168 4_4:-44949733 None:intergenic
GCTCTCTCATAAGGATCAAC+AGG 0.442610 4_4:-44949095 None:intergenic
CGAGCTTGGGCTCTCTCATA+AGG 0.459155 4_4:-44949104 None:intergenic
AATTCCCTCACTTGCATGCA+TGG 0.474769 4_4:+44949668 Msa0682910:CDS
TTCAAGAATGTACCTGTCAT+AGG 0.475029 4_4:+44949700 Msa0682910:CDS
TAGGGCATCTTCCTAAGAAA+GGG 0.476111 4_4:+44949787 Msa0682910:three_prime_UTR
ATAGGGCATCTTCCTAAGAA+AGG 0.483378 4_4:+44949786 Msa0682910:three_prime_UTR
GAGAGCCCAAGCTCGGTTCT+GGG 0.483641 4_4:+44949112 Msa0682910:CDS
TTCTTTATGTTACCAACCTA+GGG 0.487900 4_4:+44949867 Msa0682910:three_prime_UTR
TTATGTTACCAACCTAGGGT+TGG 0.492593 4_4:+44949871 Msa0682910:three_prime_UTR
AAAGTAATAAAATGCTAAGA+TGG 0.497390 4_4:+44949914 Msa0682910:three_prime_UTR
GATTGTATTGAAGAAGTTGA+GGG 0.534705 4_4:-44948965 None:intergenic
TCAAACCATGCATGCAAGTG+AGG 0.535813 4_4:-44949673 None:intergenic
TAAGGATCAACAGGAAGCAA+AGG 0.547066 4_4:-44949086 None:intergenic
AAGGATCAACAGGAAGCAAA+GGG 0.553758 4_4:-44949085 None:intergenic
GCAGATCAAGTGAAGCTACA+TGG 0.559561 4_4:+44948846 Msa0682910:CDS
GAGGGAATTTCTCAGCTGCT+AGG 0.567585 4_4:-44949654 None:intergenic
CAAACCATGCATGCAAGTGA+GGG 0.568010 4_4:-44949672 None:intergenic
GGATTGTATTGAAGAAGTTG+AGG 0.571991 4_4:-44948966 None:intergenic
GCACAAGAAAACTCCGGTGT+TGG 0.576241 4_4:+44948992 Msa0682910:CDS
CTAACGAGTGCACCAACTGC+AGG 0.579048 4_4:-44949442 None:intergenic
GAATACCATAGCGAAAATCT+GGG 0.582158 4_4:+44949489 Msa0682910:CDS
GGTGCACTCGTTAGTAGCGG+TGG 0.611355 4_4:+44949451 Msa0682910:CDS
AGACAAACCCAACCCTAGGT+TGG 0.615575 4_4:-44949879 None:intergenic
CTTATGAGAGAGCCCAAGCT+CGG 0.617875 4_4:+44949105 Msa0682910:CDS
AGCTAGACAAACCCAACCCT+AGG 0.627118 4_4:-44949883 None:intergenic
TTTCCACCATGAACCAACAC+CGG 0.639081 4_4:-44949005 None:intergenic
ATGATCATAGACTCACATAG+AGG 0.640551 4_4:-44949029 None:intergenic
GTAGCGGTGGCGATGAAGAG+CGG 0.649339 4_4:+44949464 Msa0682910:CDS
TCCAGTGCACAAGAAAACTC+CGG 0.653047 4_4:+44948986 Msa0682910:CDS
AGGGCATCTTCCTAAGAAAG+GGG 0.661151 4_4:+44949788 Msa0682910:three_prime_UTR
ACTCCGGTGTTGGTTCATGG+TGG 0.663999 4_4:+44949002 Msa0682910:CDS
GTTGGTGCACTCGTTAGTAG+CGG 0.664719 4_4:+44949448 Msa0682910:CDS
ACAGGAAGCAAAGGGTACTG+TGG 0.666663 4_4:-44949077 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAATCAACATATTATTT+AGG + chr4_4:44949265-44949284 Msa0682910:intron 10.0%
!! TTATCATATTGAATAAATTT+AGG - chr4_4:44949378-44949397 None:intergenic 10.0%
!! ATTTAATCAACATATTATTT+AGG + chr4_4:44949265-44949284 Msa0682910:intron 10.0%
!! TTATCATATTGAATAAATTT+AGG - chr4_4:44949378-44949397 None:intergenic 10.0%
!!! AAATTACTATTACTTTTTCA+TGG - chr4_4:44949202-44949221 None:intergenic 15.0%
!! AAAAATAATATTGTTGGATA+TGG - chr4_4:44949342-44949361 None:intergenic 15.0%
!!! AAATTACTATTACTTTTTCA+TGG - chr4_4:44949202-44949221 None:intergenic 15.0%
!! AAAAATAATATTGTTGGATA+TGG - chr4_4:44949342-44949361 None:intergenic 15.0%
!! TTGAATATATTGATGAGATA+TGG + chr4_4:44949054-44949073 Msa0682910:CDS 20.0%
!! AAAGTAATAAAATGCTAAGA+TGG + chr4_4:44949914-44949933 Msa0682910:three_prime_UTR 20.0%
!! TTGAATATATTGATGAGATA+TGG + chr4_4:44949054-44949073 Msa0682910:CDS 20.0%
! CTAAGAAAATTTGCAAATGA+AGG - chr4_4:44949304-44949323 None:intergenic 25.0%
! TGTCATACAAAAGTAGTTAT+AGG + chr4_4:44949768-44949787 Msa0682910:exon 25.0%
! GTCATACAAAAGTAGTTATA+GGG + chr4_4:44949769-44949788 Msa0682910:exon 25.0%
! CTAAGAAAATTTGCAAATGA+AGG - chr4_4:44949304-44949323 None:intergenic 25.0%
! TGTCATACAAAAGTAGTTAT+AGG + chr4_4:44949768-44949787 Msa0682910:exon 25.0%
! GTCATACAAAAGTAGTTATA+GGG + chr4_4:44949769-44949788 Msa0682910:exon 25.0%
AATACTACCCTCAAAGTAAA+AGG - chr4_4:44948885-44948904 None:intergenic 30.0%
!!! TGGTATACCTTTTAGCTTAA+GGG - chr4_4:44948910-44948929 None:intergenic 30.0%
!!! ATGGTATACCTTTTAGCTTA+AGG - chr4_4:44948911-44948930 None:intergenic 30.0%
TCTTCTTCTATGTTCTCATA+TGG - chr4_4:44948930-44948949 None:intergenic 30.0%
GATTGTATTGAAGAAGTTGA+GGG - chr4_4:44948968-44948987 None:intergenic 30.0%
! TTTTCATGGTATGCAAATGA+AGG - chr4_4:44949188-44949207 None:intergenic 30.0%
! TTTTTATAGATTCCTGCAGT+TGG + chr4_4:44949430-44949449 Msa0682910:intron 30.0%
! GACTACAAGAAGAAACTTTT+TGG + chr4_4:44949544-44949563 Msa0682910:CDS 30.0%
! TACAAGAAGAAACTTTTTGG+AGG + chr4_4:44949547-44949566 Msa0682910:CDS 30.0%
! GAAACTGATAGCTTTTATGA+AGG + chr4_4:44949744-44949763 Msa0682910:CDS 30.0%
TTCTTTATGTTACCAACCTA+GGG + chr4_4:44949867-44949886 Msa0682910:three_prime_UTR 30.0%
AATACTACCCTCAAAGTAAA+AGG - chr4_4:44948885-44948904 None:intergenic 30.0%
!!! TGGTATACCTTTTAGCTTAA+GGG - chr4_4:44948910-44948929 None:intergenic 30.0%
!!! ATGGTATACCTTTTAGCTTA+AGG - chr4_4:44948911-44948930 None:intergenic 30.0%
TCTTCTTCTATGTTCTCATA+TGG - chr4_4:44948930-44948949 None:intergenic 30.0%
GATTGTATTGAAGAAGTTGA+GGG - chr4_4:44948968-44948987 None:intergenic 30.0%
! TTTTCATGGTATGCAAATGA+AGG - chr4_4:44949188-44949207 None:intergenic 30.0%
! TTTTTATAGATTCCTGCAGT+TGG + chr4_4:44949430-44949449 Msa0682910:intron 30.0%
! GACTACAAGAAGAAACTTTT+TGG + chr4_4:44949544-44949563 Msa0682910:CDS 30.0%
! TACAAGAAGAAACTTTTTGG+AGG + chr4_4:44949547-44949566 Msa0682910:CDS 30.0%
! GAAACTGATAGCTTTTATGA+AGG + chr4_4:44949744-44949763 Msa0682910:CDS 30.0%
TTCTTTATGTTACCAACCTA+GGG + chr4_4:44949867-44949886 Msa0682910:three_prime_UTR 30.0%
! AAGTGAAGCTACATGGATTT+TGG + chr4_4:44948853-44948872 Msa0682910:CDS 35.0%
! GTACAGTCCTTTTACTTTGA+GGG + chr4_4:44948875-44948894 Msa0682910:CDS 35.0%
! GTATTGACCCTTAAGCTAAA+AGG + chr4_4:44948900-44948919 Msa0682910:CDS 35.0%
GGATTGTATTGAAGAAGTTG+AGG - chr4_4:44948969-44948988 None:intergenic 35.0%
ATGATCATAGACTCACATAG+AGG - chr4_4:44949032-44949051 None:intergenic 35.0%
GGATATGGTATCAACTATCA+AGG - chr4_4:44949327-44949346 None:intergenic 35.0%
AGAATACCATAGCGAAAATC+TGG + chr4_4:44949488-44949507 Msa0682910:CDS 35.0%
GAATACCATAGCGAAAATCT+GGG + chr4_4:44949489-44949508 Msa0682910:CDS 35.0%
AGCTATGTCCAGAATGTTAA+CGG - chr4_4:44949578-44949597 None:intergenic 35.0%
TTCAAGAATGTACCTGTCAT+AGG + chr4_4:44949700-44949719 Msa0682910:CDS 35.0%
CTTCTTTATGTTACCAACCT+AGG + chr4_4:44949866-44949885 Msa0682910:three_prime_UTR 35.0%
! AAGTGAAGCTACATGGATTT+TGG + chr4_4:44948853-44948872 Msa0682910:CDS 35.0%
! GTACAGTCCTTTTACTTTGA+GGG + chr4_4:44948875-44948894 Msa0682910:CDS 35.0%
! GTATTGACCCTTAAGCTAAA+AGG + chr4_4:44948900-44948919 Msa0682910:CDS 35.0%
GGATTGTATTGAAGAAGTTG+AGG - chr4_4:44948969-44948988 None:intergenic 35.0%
ATGATCATAGACTCACATAG+AGG - chr4_4:44949032-44949051 None:intergenic 35.0%
GGATATGGTATCAACTATCA+AGG - chr4_4:44949327-44949346 None:intergenic 35.0%
AGAATACCATAGCGAAAATC+TGG + chr4_4:44949488-44949507 Msa0682910:CDS 35.0%
GAATACCATAGCGAAAATCT+GGG + chr4_4:44949489-44949508 Msa0682910:CDS 35.0%
AGCTATGTCCAGAATGTTAA+CGG - chr4_4:44949578-44949597 None:intergenic 35.0%
TTCAAGAATGTACCTGTCAT+AGG + chr4_4:44949700-44949719 Msa0682910:CDS 35.0%
CTTCTTTATGTTACCAACCT+AGG + chr4_4:44949866-44949885 Msa0682910:three_prime_UTR 35.0%
! GGTACAGTCCTTTTACTTTG+AGG + chr4_4:44948874-44948893 Msa0682910:CDS 40.0%
AAGGATCAACAGGAAGCAAA+GGG - chr4_4:44949088-44949107 None:intergenic 40.0%
TAAGGATCAACAGGAAGCAA+AGG - chr4_4:44949089-44949108 None:intergenic 40.0%
! ATGTTCCCAGATTTTCGCTA+TGG - chr4_4:44949497-44949516 None:intergenic 40.0%
AACATTCTGGACATAGCTCT+TGG + chr4_4:44949580-44949599 Msa0682910:CDS 40.0%
! GGAAGATTTTCACCTATGAC+AGG - chr4_4:44949715-44949734 None:intergenic 40.0%
GCTATCAGTTTCTCATGATC+AGG - chr4_4:44949736-44949755 None:intergenic 40.0%
! ATAGGGCATCTTCCTAAGAA+AGG + chr4_4:44949786-44949805 Msa0682910:three_prime_UTR 40.0%
! TAGGGCATCTTCCTAAGAAA+GGG + chr4_4:44949787-44949806 Msa0682910:three_prime_UTR 40.0%
ATACAAGCTACCCCTTTCTT+AGG - chr4_4:44949801-44949820 None:intergenic 40.0%
TTATGTTACCAACCTAGGGT+TGG + chr4_4:44949871-44949890 Msa0682910:three_prime_UTR 40.0%
TATGTTACCAACCTAGGGTT+GGG + chr4_4:44949872-44949891 Msa0682910:three_prime_UTR 40.0%
! GGTACAGTCCTTTTACTTTG+AGG + chr4_4:44948874-44948893 Msa0682910:CDS 40.0%
AAGGATCAACAGGAAGCAAA+GGG - chr4_4:44949088-44949107 None:intergenic 40.0%
TAAGGATCAACAGGAAGCAA+AGG - chr4_4:44949089-44949108 None:intergenic 40.0%
! ATGTTCCCAGATTTTCGCTA+TGG - chr4_4:44949497-44949516 None:intergenic 40.0%
AACATTCTGGACATAGCTCT+TGG + chr4_4:44949580-44949599 Msa0682910:CDS 40.0%
! GGAAGATTTTCACCTATGAC+AGG - chr4_4:44949715-44949734 None:intergenic 40.0%
GCTATCAGTTTCTCATGATC+AGG - chr4_4:44949736-44949755 None:intergenic 40.0%
! ATAGGGCATCTTCCTAAGAA+AGG + chr4_4:44949786-44949805 Msa0682910:three_prime_UTR 40.0%
! TAGGGCATCTTCCTAAGAAA+GGG + chr4_4:44949787-44949806 Msa0682910:three_prime_UTR 40.0%
ATACAAGCTACCCCTTTCTT+AGG - chr4_4:44949801-44949820 None:intergenic 40.0%
TTATGTTACCAACCTAGGGT+TGG + chr4_4:44949871-44949890 Msa0682910:three_prime_UTR 40.0%
TATGTTACCAACCTAGGGTT+GGG + chr4_4:44949872-44949891 Msa0682910:three_prime_UTR 40.0%
GCAGATCAAGTGAAGCTACA+TGG + chr4_4:44948846-44948865 Msa0682910:CDS 45.0%
TCCAGTGCACAAGAAAACTC+CGG + chr4_4:44948986-44949005 Msa0682910:CDS 45.0%
!! AAAACTCCGGTGTTGGTTCA+TGG + chr4_4:44948999-44949018 Msa0682910:CDS 45.0%
TTTCCACCATGAACCAACAC+CGG - chr4_4:44949008-44949027 None:intergenic 45.0%
GCTCTCTCATAAGGATCAAC+AGG - chr4_4:44949098-44949117 None:intergenic 45.0%
! TTTTACCCAGAACCGAGCTT+GGG - chr4_4:44949120-44949139 None:intergenic 45.0%
! ATTTTACCCAGAACCGAGCT+TGG - chr4_4:44949121-44949140 None:intergenic 45.0%
AGGAGACACCGTTAACATTC+TGG + chr4_4:44949567-44949586 Msa0682910:CDS 45.0%
AATTCCCTCACTTGCATGCA+TGG + chr4_4:44949668-44949687 Msa0682910:CDS 45.0%
CAAACCATGCATGCAAGTGA+GGG - chr4_4:44949675-44949694 None:intergenic 45.0%
TCAAACCATGCATGCAAGTG+AGG - chr4_4:44949676-44949695 None:intergenic 45.0%
! AGGGCATCTTCCTAAGAAAG+GGG + chr4_4:44949788-44949807 Msa0682910:three_prime_UTR 45.0%
GCAGATCAAGTGAAGCTACA+TGG + chr4_4:44948846-44948865 Msa0682910:CDS 45.0%
TCCAGTGCACAAGAAAACTC+CGG + chr4_4:44948986-44949005 Msa0682910:CDS 45.0%
!! AAAACTCCGGTGTTGGTTCA+TGG + chr4_4:44948999-44949018 Msa0682910:CDS 45.0%
TTTCCACCATGAACCAACAC+CGG - chr4_4:44949008-44949027 None:intergenic 45.0%
GCTCTCTCATAAGGATCAAC+AGG - chr4_4:44949098-44949117 None:intergenic 45.0%
! TTTTACCCAGAACCGAGCTT+GGG - chr4_4:44949120-44949139 None:intergenic 45.0%
! ATTTTACCCAGAACCGAGCT+TGG - chr4_4:44949121-44949140 None:intergenic 45.0%
AGGAGACACCGTTAACATTC+TGG + chr4_4:44949567-44949586 Msa0682910:CDS 45.0%
AATTCCCTCACTTGCATGCA+TGG + chr4_4:44949668-44949687 Msa0682910:CDS 45.0%
CAAACCATGCATGCAAGTGA+GGG - chr4_4:44949675-44949694 None:intergenic 45.0%
TCAAACCATGCATGCAAGTG+AGG - chr4_4:44949676-44949695 None:intergenic 45.0%
! AGGGCATCTTCCTAAGAAAG+GGG + chr4_4:44949788-44949807 Msa0682910:three_prime_UTR 45.0%
!! ATAAAAAAAAATAATATTGT+TGG - chr4_4:44949348-44949367 None:intergenic 5.0%
!! TAGTATTATAAATAATTTAT+TGG + chr4_4:44949402-44949421 Msa0682910:intron 5.0%
!! AGTATTATAAATAATTTATT+GGG + chr4_4:44949403-44949422 Msa0682910:intron 5.0%
!! ATAAAAAAAAATAATATTGT+TGG - chr4_4:44949348-44949367 None:intergenic 5.0%
!! TAGTATTATAAATAATTTAT+TGG + chr4_4:44949402-44949421 Msa0682910:intron 5.0%
!! AGTATTATAAATAATTTATT+GGG + chr4_4:44949403-44949422 Msa0682910:intron 5.0%
! ACCGGAGTTTTCTTGTGCAC+TGG - chr4_4:44948990-44949009 None:intergenic 50.0%
GCACAAGAAAACTCCGGTGT+TGG + chr4_4:44948992-44949011 Msa0682910:CDS 50.0%
!! ACAGGAAGCAAAGGGTACTG+TGG - chr4_4:44949080-44949099 None:intergenic 50.0%
CTTATGAGAGAGCCCAAGCT+CGG + chr4_4:44949105-44949124 Msa0682910:CDS 50.0%
GTTGGTGCACTCGTTAGTAG+CGG + chr4_4:44949448-44949467 Msa0682910:CDS 50.0%
GAGGGAATTTCTCAGCTGCT+AGG - chr4_4:44949657-44949676 None:intergenic 50.0%
AGACAAACCCAACCCTAGGT+TGG - chr4_4:44949882-44949901 None:intergenic 50.0%
AGCTAGACAAACCCAACCCT+AGG - chr4_4:44949886-44949905 None:intergenic 50.0%
! ACCGGAGTTTTCTTGTGCAC+TGG - chr4_4:44948990-44949009 None:intergenic 50.0%
GCACAAGAAAACTCCGGTGT+TGG + chr4_4:44948992-44949011 Msa0682910:CDS 50.0%
!! ACAGGAAGCAAAGGGTACTG+TGG - chr4_4:44949080-44949099 None:intergenic 50.0%
CTTATGAGAGAGCCCAAGCT+CGG + chr4_4:44949105-44949124 Msa0682910:CDS 50.0%
GTTGGTGCACTCGTTAGTAG+CGG + chr4_4:44949448-44949467 Msa0682910:CDS 50.0%
GAGGGAATTTCTCAGCTGCT+AGG - chr4_4:44949657-44949676 None:intergenic 50.0%
AGACAAACCCAACCCTAGGT+TGG - chr4_4:44949882-44949901 None:intergenic 50.0%
AGCTAGACAAACCCAACCCT+AGG - chr4_4:44949886-44949905 None:intergenic 50.0%
!! ACTCCGGTGTTGGTTCATGG+TGG + chr4_4:44949002-44949021 Msa0682910:CDS 55.0%
CGAGCTTGGGCTCTCTCATA+AGG - chr4_4:44949107-44949126 None:intergenic 55.0%
CTAACGAGTGCACCAACTGC+AGG - chr4_4:44949445-44949464 None:intergenic 55.0%
!! ACTCCGGTGTTGGTTCATGG+TGG + chr4_4:44949002-44949021 Msa0682910:CDS 55.0%
CGAGCTTGGGCTCTCTCATA+AGG - chr4_4:44949107-44949126 None:intergenic 55.0%
CTAACGAGTGCACCAACTGC+AGG - chr4_4:44949445-44949464 None:intergenic 55.0%
AGAGAGCCCAAGCTCGGTTC+TGG + chr4_4:44949111-44949130 Msa0682910:CDS 60.0%
GAGAGCCCAAGCTCGGTTCT+GGG + chr4_4:44949112-44949131 Msa0682910:CDS 60.0%
GGTGCACTCGTTAGTAGCGG+TGG + chr4_4:44949451-44949470 Msa0682910:CDS 60.0%
GTAGCGGTGGCGATGAAGAG+CGG + chr4_4:44949464-44949483 Msa0682910:CDS 60.0%
AGAGAGCCCAAGCTCGGTTC+TGG + chr4_4:44949111-44949130 Msa0682910:CDS 60.0%
GAGAGCCCAAGCTCGGTTCT+GGG + chr4_4:44949112-44949131 Msa0682910:CDS 60.0%
GGTGCACTCGTTAGTAGCGG+TGG + chr4_4:44949451-44949470 Msa0682910:CDS 60.0%
GTAGCGGTGGCGATGAAGAG+CGG + chr4_4:44949464-44949483 Msa0682910:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 44948843 44949936 44948843 ID=Msa0682910;Name=Msa0682910
chr4_4 mRNA 44948843 44949936 44948843 ID=Msa0682910-mRNA-1;Parent=Msa0682910;Name=Msa0682910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.5|1|1|1|2|153|218
chr4_4 exon 44948843 44949154 44948843 ID=Msa0682910-mRNA-1:exon:10865;Parent=Msa0682910-mRNA-1
chr4_4 exon 44949439 44949936 44949439 ID=Msa0682910-mRNA-1:exon:10866;Parent=Msa0682910-mRNA-1
chr4_4 CDS 44948843 44949154 44948843 ID=Msa0682910-mRNA-1:cds;Parent=Msa0682910-mRNA-1
chr4_4 CDS 44949439 44949783 44949439 ID=Msa0682910-mRNA-1:cds;Parent=Msa0682910-mRNA-1
chr4_4 three_prime_UTR 44949784 44949936 44949784 ID=Msa0682910-mRNA-1:three_prime_utr;Parent=Msa0682910-mRNA-1
Gene Sequence

>Msa0682910

ATGGCAGATCAAGTGAAGCTACATGGATTTTGGTACAGTCCTTTTACTTTGAGGGTAGTATTGACCCTTAAGCTAAAAGGTATACCATATGAGAACATAGAAGAAGATCGTTTCAACAAGAGCCCTCAACTTCTTCAATACAATCCAGTGCACAAGAAAACTCCGGTGTTGGTTCATGGTGGAAAACCTCTATGTGAGTCTATGATCATTGTTGAATATATTGATGAGATATGGCCACAGTACCCTTTGCTTCCTGTTGATCCTTATGAGAGAGCCCAAGCTCGGTTCTGGGTAAAATATGTTGATGACATTATTCCTGCAGTTGGTGCACTCGTTAGTAGCGGTGGCGATGAAGAGCGGAAGAATACCATAGCGAAAATCTGGGAACATCTTAGAGTTGTTGAAGAACAATGCATTGACTACAAGAAGAAACTTTTTGGAGGAGACACCGTTAACATTCTGGACATAGCTCTTGGATCAACTATCAAGTTTCTTGTAACTATTGAAGATATCATTGAATTTAAGATCCTAGCAGCTGAGAAATTCCCTCACTTGCATGCATGGTTTGAAAATTTCAAGAATGTACCTGTCATAGGTGAAAATCTTCCTGATCATGAGAAACTGATAGCTTTTATGAAGGCTGTCATACAAAAGTAG

Protein sequence

>Msa0682910

MADQVKLHGFWYSPFTLRVVLTLKLKGIPYENIEEDRFNKSPQLLQYNPVHKKTPVLVHGGKPLCESMIIVEYIDEIWPQYPLLPVDPYERAQARFWVKYVDDIIPAVGALVSSGGDEERKNTIAKIWEHLRVVEEQCIDYKKKLFGGDTVNILDIALGSTIKFLVTIEDIIEFKILAAEKFPHLHAWFENFKNVPVIGENLPDHEKLIAFMKAVIQK*