AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1140930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140930 MtrunA17_Chr7g0241061 91.620 179 15 0 1 179 1 179 4.07e-120 337
Msa1140930 MtrunA17_Chr4g0008131 71.598 169 48 0 1 169 1 169 1.37e-86 253
Msa1140930 MtrunA17_Chr4g0008141 68.539 178 56 0 1 178 1 178 3.45e-83 243
Msa1140930 MtrunA17_Chr4g0008121 68.508 181 55 1 1 179 1 181 1.97e-78 233
Msa1140930 MtrunA17_Chr1g0203171 51.923 156 74 1 12 166 15 170 6.19e-53 167
Msa1140930 MtrunA17_Chr6g0472041 47.953 171 85 2 7 176 4 171 1.06e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1140930 AT3G54040.1 56.667 180 72 4 1 178 1 176 6.81e-65 197
Msa1140930 AT3G54040.2 59.172 169 63 4 1 167 57 221 3.53e-64 197
Msa1140930 AT5G52390.1 44.134 179 99 1 1 178 1 179 3.42e-49 158

Find 66 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGGAGAATTTACTCATTT+TGG 0.051146 7_4:-13520919 Msa1140930:three_prime_UTR
CCTAAGCTTTCACTTTATTT+TGG 0.138235 7_4:-13521047 Msa1140930:three_prime_UTR
ATACATGTGACTGCATTATT+TGG 0.139866 7_4:-13520869 Msa1140930:three_prime_UTR
GAGCATAATCAAAGGTAATT+TGG 0.227054 7_4:+13522213 None:intergenic
CGAAGGATGCATGGATAAAA+AGG 0.255435 7_4:+13522182 None:intergenic
AAAGACATGATTTAAAATTC+TGG 0.259382 7_4:+13522241 None:intergenic
TCACATGTATAGAAAGTATT+TGG 0.272808 7_4:+13520882 None:intergenic
GCTTAGGATACTTTGTTTAC+AGG 0.282508 7_4:+13521063 None:intergenic
CCTATATATAACCAAGTCTT+TGG 0.295437 7_4:-13522369 Msa1140930:five_prime_UTR
TGAGTTCATTATTATGTGAT+TGG 0.314997 7_4:-13520991 Msa1140930:three_prime_UTR
GTATAGTGTATCAAGAATTA+AGG 0.329246 7_4:+13522280 None:intergenic
CTTTACTTCAATTTGGCTGC+TGG 0.332953 7_4:-13521749 Msa1140930:CDS
TCCTTCTCAATAGCTTCTTC+AGG 0.357610 7_4:-13522010 Msa1140930:CDS
GTGAGCTCTGGAGCTGCACC+TGG 0.378232 7_4:-13521137 Msa1140930:CDS
TACATGTGACTGCATTATTT+GGG 0.379311 7_4:-13520868 Msa1140930:three_prime_UTR
TCTTGTGACAGAGCAGAAAC+AGG 0.399775 7_4:+13521113 None:intergenic
ACAAGATGGTGAACAAAGTT+TGG 0.401861 7_4:+13521799 None:intergenic
TAGAAGAAACAATAATTTGT+TGG 0.402455 7_4:-13520944 Msa1140930:three_prime_UTR
CCAAAGACTTGGTTATATAT+AGG 0.402950 7_4:+13522369 None:intergenic
TTCAGGAAAACGGTGTTTGT+TGG 0.405418 7_4:-13521993 Msa1140930:CDS
AAAATGAAGAATATATGGTT+TGG 0.438879 7_4:+13522315 None:intergenic
ATGATCGAGCTTGTGAGCTC+TGG 0.439225 7_4:-13521149 Msa1140930:CDS
TTCAATTTGGCTGCTGGGGA+AGG 0.450339 7_4:-13521743 Msa1140930:intron
GGTTATATATAGGTAAGAAA+TGG 0.456260 7_4:+13522379 None:intergenic
TACTTTGTTTACAGGGGAGA+AGG 0.465010 7_4:+13521071 None:intergenic
CCAAAATAAAGTGAAAGCTT+AGG 0.469606 7_4:+13521047 None:intergenic
CTTAGGATACTTTGTTTACA+GGG 0.470384 7_4:+13521064 None:intergenic
TTTACTTCAATTTGGCTGCT+GGG 0.473999 7_4:-13521748 Msa1140930:CDS
CAATAGCTTCTTCAGGAAAA+CGG 0.477557 7_4:-13522003 Msa1140930:CDS
TGTGAACAACTATGTGGAAA+AGG 0.479846 7_4:+13522344 None:intergenic
ACAGAGAAGGCCGCGGATGG+TGG 0.484397 7_4:-13521968 Msa1140930:CDS
AACAATAATTTGTTGGTACT+CGG 0.502054 7_4:-13520937 Msa1140930:three_prime_UTR
CAGCAGCCAAATTGAAGTAA+AGG 0.504408 7_4:+13521750 None:intergenic
CAGAGAAGGCCGCGGATGGT+GGG 0.512812 7_4:-13521967 Msa1140930:CDS
ACTTTGTTTACAGGGGAGAA+GGG 0.526118 7_4:+13521072 None:intergenic
AGAGAAGGCCGCGGATGGTG+GGG 0.526485 7_4:-13521966 Msa1140930:CDS
GGAGTGGTGGAGCGAATGGC+GGG 0.529578 7_4:-13521917 Msa1140930:CDS
GCTCGATCATAGCGCGATGA+GGG 0.529694 7_4:+13521162 None:intergenic
GACAGAGCAGAAACAGGGCC+AGG 0.529854 7_4:+13521119 None:intergenic
TCCTGAAGAAGCTATTGAGA+AGG 0.545591 7_4:+13522009 None:intergenic
AGAAGGAGTGGTGGAGCGAA+TGG 0.552608 7_4:-13521921 Msa1140930:CDS
GAGACAGAGAAGGCCGCGGA+TGG 0.557056 7_4:-13521971 Msa1140930:CDS
GATCATAGCGCGATGAGGGT+TGG 0.568904 7_4:+13521166 None:intergenic
AGCTCGATCATAGCGCGATG+AGG 0.572301 7_4:+13521161 None:intergenic
CTTTGTTTACAGGGGAGAAG+GGG 0.574312 7_4:+13521073 None:intergenic
CAAAGTTTGGCTGTGAATTG+TGG 0.578087 7_4:+13521812 None:intergenic
GTGTTTGTTGGAGACAGAGA+AGG 0.584309 7_4:-13521981 Msa1140930:CDS
AGGAGTGGTGGAGCGAATGG+CGG 0.586603 7_4:-13521918 Msa1140930:CDS
TACCAATGTAGGACATCAGA+AGG 0.590798 7_4:-13521938 Msa1140930:CDS
GATCAATGTGTGAATGCTTG+TGG 0.593710 7_4:-13521881 Msa1140930:CDS
TTACTTCAATTTGGCTGCTG+GGG 0.597417 7_4:-13521747 Msa1140930:CDS
TTGTGGCTCAAGCAATGCAT+CGG 0.603597 7_4:+13521829 None:intergenic
CTCCTTCTGATGTCCTACAT+TGG 0.604665 7_4:+13521936 None:intergenic
TGGAAAAGGAACCAAAGACT+TGG 0.605310 7_4:+13522358 None:intergenic
GTTGGAGACAGAGAAGGCCG+CGG 0.616058 7_4:-13521975 Msa1140930:CDS
TGTGTGTGAGGAGTTGCAAA+AGG 0.620931 7_4:-13522041 Msa1140930:CDS
TGTGTGTACCGAAGGATGCA+TGG 0.622798 7_4:+13522173 None:intergenic
GAACACAAGAGCATAATCAA+AGG 0.628881 7_4:+13522205 None:intergenic
TAGGACATCAGAAGGAGTGG+TGG 0.629632 7_4:-13521930 Msa1140930:CDS
GTGGGGTCGAGTACCAATGT+AGG 0.634196 7_4:-13521949 Msa1140930:CDS
CTTGTGACAGAGCAGAAACA+GGG 0.634654 7_4:+13521114 None:intergenic
ATGTAGGACATCAGAAGGAG+TGG 0.634793 7_4:-13521933 Msa1140930:CDS
TTAGGATACTTTGTTTACAG+GGG 0.636481 7_4:+13521065 None:intergenic
GTACTCGACCCCACCATCCG+CGG 0.639487 7_4:+13521958 None:intergenic
AAGATATGTGAACAACTATG+TGG 0.642120 7_4:+13522338 None:intergenic
TACAGCTGAAGTTGTGTGTG+AGG 0.666131 7_4:-13522053 Msa1140930:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATAAATAAATTGCAT+AGG + chr7_4:13521145-13521164 None:intergenic 10.0%
!! TTAAAATAAATAAATTGCAT+AGG + chr7_4:13521145-13521164 None:intergenic 10.0%
!! TGTAAAAAATGAAGAATATA+TGG + chr7_4:13520940-13520959 None:intergenic 15.0%
!!! TTTTGAACAATTCAAATAAT+TGG - chr7_4:13521620-13521639 Msa1140930:intron 15.0%
!! TTTGAACAATTCAAATAATT+GGG - chr7_4:13521621-13521640 Msa1140930:intron 15.0%
!!! TTTTCTAGAAAAAAAACATA+AGG - chr7_4:13521746-13521765 Msa1140930:CDS 15.0%
!! TTAACTTCAAATTTAATCAA+AGG - chr7_4:13521876-13521895 Msa1140930:CDS 15.0%
!! TAACTTCAAATTTAATCAAA+GGG - chr7_4:13521877-13521896 Msa1140930:CDS 15.0%
!! AACAAAAAATAAAACAAAGA+AGG - chr7_4:13521922-13521941 Msa1140930:CDS 15.0%
!!! CTCTTTTGATATTATAATAA+AGG - chr7_4:13521997-13522016 Msa1140930:CDS 15.0%
!! TGTAAAAAATGAAGAATATA+TGG + chr7_4:13520940-13520959 None:intergenic 15.0%
!!! TTTTGAACAATTCAAATAAT+TGG - chr7_4:13521620-13521639 Msa1140930:intron 15.0%
!! TTTGAACAATTCAAATAATT+GGG - chr7_4:13521621-13521640 Msa1140930:intron 15.0%
!!! TTTTCTAGAAAAAAAACATA+AGG - chr7_4:13521746-13521765 Msa1140930:CDS 15.0%
!! TTAACTTCAAATTTAATCAA+AGG - chr7_4:13521876-13521895 Msa1140930:CDS 15.0%
!! TAACTTCAAATTTAATCAAA+GGG - chr7_4:13521877-13521896 Msa1140930:CDS 15.0%
!! AACAAAAAATAAAACAAAGA+AGG - chr7_4:13521922-13521941 Msa1140930:CDS 15.0%
!!! CTCTTTTGATATTATAATAA+AGG - chr7_4:13521997-13522016 Msa1140930:CDS 15.0%
!! AAAATGAAGAATATATGGTT+TGG + chr7_4:13520935-13520954 None:intergenic 20.0%
!!! AAAGACATGATTTAAAATTC+TGG + chr7_4:13521009-13521028 None:intergenic 20.0%
!! TAATTGGAAAATATATAGCA+GGG + chr7_4:13521111-13521130 None:intergenic 20.0%
!! AAGTAAAGGTCAAAAATATT+GGG + chr7_4:13521486-13521505 None:intergenic 20.0%
!! TTGTTCAAAATATGATGAAA+AGG + chr7_4:13521610-13521629 None:intergenic 20.0%
!! AAGTAATTAAGACAAAAAGA+AGG + chr7_4:13521719-13521738 None:intergenic 20.0%
!!! TTCTTTTTGTCTTAATTACT+TGG - chr7_4:13521718-13521737 Msa1140930:intron 20.0%
!!! TAGAAGAAACAATAATTTGT+TGG - chr7_4:13522303-13522322 Msa1140930:five_prime_UTR 20.0%
!! AAAATGAAGAATATATGGTT+TGG + chr7_4:13520935-13520954 None:intergenic 20.0%
!!! AAAGACATGATTTAAAATTC+TGG + chr7_4:13521009-13521028 None:intergenic 20.0%
!! TAATTGGAAAATATATAGCA+GGG + chr7_4:13521111-13521130 None:intergenic 20.0%
!! AAGTAAAGGTCAAAAATATT+GGG + chr7_4:13521486-13521505 None:intergenic 20.0%
!! TTGTTCAAAATATGATGAAA+AGG + chr7_4:13521610-13521629 None:intergenic 20.0%
!! AAGTAATTAAGACAAAAAGA+AGG + chr7_4:13521719-13521738 None:intergenic 20.0%
!!! TTCTTTTTGTCTTAATTACT+TGG - chr7_4:13521718-13521737 Msa1140930:intron 20.0%
!!! TAGAAGAAACAATAATTTGT+TGG - chr7_4:13522303-13522322 Msa1140930:five_prime_UTR 20.0%
! GGTTATATATAGGTAAGAAA+TGG + chr7_4:13520871-13520890 None:intergenic 25.0%
! GTATAGTGTATCAAGAATTA+AGG + chr7_4:13520970-13520989 None:intergenic 25.0%
! GTAATTGGAAAATATATAGC+AGG + chr7_4:13521112-13521131 None:intergenic 25.0%
! ATAGGTAACTAGATAGTAAT+TGG + chr7_4:13521127-13521146 None:intergenic 25.0%
! AGTAAAGGTCAAAAATATTG+GGG + chr7_4:13521485-13521504 None:intergenic 25.0%
! GAAGTAAAGGTCAAAAATAT+TGG + chr7_4:13521487-13521506 None:intergenic 25.0%
!! TTTTGACCTTTACTTCAATT+TGG - chr7_4:13521491-13521510 Msa1140930:intron 25.0%
! ATCTTCATGCATAAAAGTTA+TGG + chr7_4:13521551-13521570 None:intergenic 25.0%
! CTGTTCAAAATAAGATGAAA+AGG + chr7_4:13521686-13521705 None:intergenic 25.0%
!! TTTTTGTCTTAATTACTTGG+TGG - chr7_4:13521721-13521740 Msa1140930:intron 25.0%
! TTTGCTTAATAACAAAGCAA+TGG - chr7_4:13521791-13521810 Msa1140930:CDS 25.0%
! GTTAAAATGTTAGATCATGA+CGG + chr7_4:13521861-13521880 None:intergenic 25.0%
! TGAGTTCATTATTATGTGAT+TGG - chr7_4:13522256-13522275 Msa1140930:five_prime_UTR 25.0%
!!! AACAATAATTTGTTGGTACT+CGG - chr7_4:13522310-13522329 Msa1140930:five_prime_UTR 25.0%
!!! TCACATGTATAGAAAGTATT+TGG + chr7_4:13522368-13522387 None:intergenic 25.0%
! GGTTATATATAGGTAAGAAA+TGG + chr7_4:13520871-13520890 None:intergenic 25.0%
! GTATAGTGTATCAAGAATTA+AGG + chr7_4:13520970-13520989 None:intergenic 25.0%
! GTAATTGGAAAATATATAGC+AGG + chr7_4:13521112-13521131 None:intergenic 25.0%
! ATAGGTAACTAGATAGTAAT+TGG + chr7_4:13521127-13521146 None:intergenic 25.0%
! AGTAAAGGTCAAAAATATTG+GGG + chr7_4:13521485-13521504 None:intergenic 25.0%
! GAAGTAAAGGTCAAAAATAT+TGG + chr7_4:13521487-13521506 None:intergenic 25.0%
!! TTTTGACCTTTACTTCAATT+TGG - chr7_4:13521491-13521510 Msa1140930:intron 25.0%
! ATCTTCATGCATAAAAGTTA+TGG + chr7_4:13521551-13521570 None:intergenic 25.0%
! CTGTTCAAAATAAGATGAAA+AGG + chr7_4:13521686-13521705 None:intergenic 25.0%
!! TTTTTGTCTTAATTACTTGG+TGG - chr7_4:13521721-13521740 Msa1140930:intron 25.0%
! TTTGCTTAATAACAAAGCAA+TGG - chr7_4:13521791-13521810 Msa1140930:CDS 25.0%
! GTTAAAATGTTAGATCATGA+CGG + chr7_4:13521861-13521880 None:intergenic 25.0%
! TGAGTTCATTATTATGTGAT+TGG - chr7_4:13522256-13522275 Msa1140930:five_prime_UTR 25.0%
!!! AACAATAATTTGTTGGTACT+CGG - chr7_4:13522310-13522329 Msa1140930:five_prime_UTR 25.0%
!!! TCACATGTATAGAAAGTATT+TGG + chr7_4:13522368-13522387 None:intergenic 25.0%
! CCAAAGACTTGGTTATATAT+AGG + chr7_4:13520881-13520900 None:intergenic 30.0%
CCTATATATAACCAAGTCTT+TGG - chr7_4:13520878-13520897 Msa1140930:three_prime_UTR 30.0%
AAGATATGTGAACAACTATG+TGG + chr7_4:13520912-13520931 None:intergenic 30.0%
GAGCATAATCAAAGGTAATT+TGG + chr7_4:13521037-13521056 None:intergenic 30.0%
! GGAGTTGAAAGAAATTTTGT+TGG - chr7_4:13521387-13521406 Msa1140930:intron 30.0%
! CAAAAATATTGGGGCAATTT+TGG + chr7_4:13521476-13521495 None:intergenic 30.0%
! ACTTTTATGCATGAAGATCA+TGG - chr7_4:13521553-13521572 Msa1140930:intron 30.0%
! GAAGGTTCTTTTCTTGTAAA+AGG - chr7_4:13521940-13521959 Msa1140930:CDS 30.0%
! TTAGGATACTTTGTTTACAG+GGG + chr7_4:13522185-13522204 None:intergenic 30.0%
! CTTAGGATACTTTGTTTACA+GGG + chr7_4:13522186-13522205 None:intergenic 30.0%
CCAAAATAAAGTGAAAGCTT+AGG + chr7_4:13522203-13522222 None:intergenic 30.0%
!! CCTAAGCTTTCACTTTATTT+TGG - chr7_4:13522200-13522219 Msa1140930:CDS 30.0%
ATACATGTGACTGCATTATT+TGG - chr7_4:13522378-13522397 Msa1140930:five_prime_UTR 30.0%
TACATGTGACTGCATTATTT+GGG - chr7_4:13522379-13522398 Msa1140930:five_prime_UTR 30.0%
! CCAAAGACTTGGTTATATAT+AGG + chr7_4:13520881-13520900 None:intergenic 30.0%
CCTATATATAACCAAGTCTT+TGG - chr7_4:13520878-13520897 Msa1140930:three_prime_UTR 30.0%
AAGATATGTGAACAACTATG+TGG + chr7_4:13520912-13520931 None:intergenic 30.0%
GAGCATAATCAAAGGTAATT+TGG + chr7_4:13521037-13521056 None:intergenic 30.0%
! GGAGTTGAAAGAAATTTTGT+TGG - chr7_4:13521387-13521406 Msa1140930:intron 30.0%
! CAAAAATATTGGGGCAATTT+TGG + chr7_4:13521476-13521495 None:intergenic 30.0%
! ACTTTTATGCATGAAGATCA+TGG - chr7_4:13521553-13521572 Msa1140930:intron 30.0%
! GAAGGTTCTTTTCTTGTAAA+AGG - chr7_4:13521940-13521959 Msa1140930:CDS 30.0%
! TTAGGATACTTTGTTTACAG+GGG + chr7_4:13522185-13522204 None:intergenic 30.0%
! CTTAGGATACTTTGTTTACA+GGG + chr7_4:13522186-13522205 None:intergenic 30.0%
CCAAAATAAAGTGAAAGCTT+AGG + chr7_4:13522203-13522222 None:intergenic 30.0%
!! CCTAAGCTTTCACTTTATTT+TGG - chr7_4:13522200-13522219 Msa1140930:CDS 30.0%
ATACATGTGACTGCATTATT+TGG - chr7_4:13522378-13522397 Msa1140930:five_prime_UTR 30.0%
TACATGTGACTGCATTATTT+GGG - chr7_4:13522379-13522398 Msa1140930:five_prime_UTR 30.0%
TGTGAACAACTATGTGGAAA+AGG + chr7_4:13520906-13520925 None:intergenic 35.0%
! GAACACAAGAGCATAATCAA+AGG + chr7_4:13521045-13521064 None:intergenic 35.0%
GAAGGATGCATGGATAAAAA+GGG + chr7_4:13521067-13521086 None:intergenic 35.0%
! CTTTTTATCCATGCATCCTT+CGG - chr7_4:13521066-13521085 Msa1140930:exon 35.0%
TATATAGCAGGGTGTGTATA+TGG + chr7_4:13521100-13521119 None:intergenic 35.0%
CAATAGCTTCTTCAGGAAAA+CGG - chr7_4:13521244-13521263 Msa1140930:intron 35.0%
ACAAGATGGTGAACAAAGTT+TGG + chr7_4:13521451-13521470 None:intergenic 35.0%
TTTACTTCAATTTGGCTGCT+GGG - chr7_4:13521499-13521518 Msa1140930:intron 35.0%
! GTTTTCACCACAAATCACTA+TGG + chr7_4:13521647-13521666 None:intergenic 35.0%
CTTTGATACTATGCAAATGC+AGG - chr7_4:13522023-13522042 Msa1140930:CDS 35.0%
! GCTTAGGATACTTTGTTTAC+AGG + chr7_4:13522187-13522206 None:intergenic 35.0%
! CTCGGAGAATTTACTCATTT+TGG - chr7_4:13522328-13522347 Msa1140930:five_prime_UTR 35.0%
TGTGAACAACTATGTGGAAA+AGG + chr7_4:13520906-13520925 None:intergenic 35.0%
! GAACACAAGAGCATAATCAA+AGG + chr7_4:13521045-13521064 None:intergenic 35.0%
GAAGGATGCATGGATAAAAA+GGG + chr7_4:13521067-13521086 None:intergenic 35.0%
! CTTTTTATCCATGCATCCTT+CGG - chr7_4:13521066-13521085 Msa1140930:exon 35.0%
TATATAGCAGGGTGTGTATA+TGG + chr7_4:13521100-13521119 None:intergenic 35.0%
CAATAGCTTCTTCAGGAAAA+CGG - chr7_4:13521244-13521263 Msa1140930:intron 35.0%
ACAAGATGGTGAACAAAGTT+TGG + chr7_4:13521451-13521470 None:intergenic 35.0%
TTTACTTCAATTTGGCTGCT+GGG - chr7_4:13521499-13521518 Msa1140930:intron 35.0%
! GTTTTCACCACAAATCACTA+TGG + chr7_4:13521647-13521666 None:intergenic 35.0%
CTTTGATACTATGCAAATGC+AGG - chr7_4:13522023-13522042 Msa1140930:CDS 35.0%
! GCTTAGGATACTTTGTTTAC+AGG + chr7_4:13522187-13522206 None:intergenic 35.0%
! CTCGGAGAATTTACTCATTT+TGG - chr7_4:13522328-13522347 Msa1140930:five_prime_UTR 35.0%
TGGAAAAGGAACCAAAGACT+TGG + chr7_4:13520892-13520911 None:intergenic 40.0%
CGAAGGATGCATGGATAAAA+AGG + chr7_4:13521068-13521087 None:intergenic 40.0%
TCCTTCTCAATAGCTTCTTC+AGG - chr7_4:13521237-13521256 Msa1140930:intron 40.0%
TCCTGAAGAAGCTATTGAGA+AGG + chr7_4:13521241-13521260 None:intergenic 40.0%
TTCAGGAAAACGGTGTTTGT+TGG - chr7_4:13521254-13521273 Msa1140930:intron 40.0%
TACCAATGTAGGACATCAGA+AGG - chr7_4:13521309-13521328 Msa1140930:intron 40.0%
GATCAATGTGTGAATGCTTG+TGG - chr7_4:13521366-13521385 Msa1140930:intron 40.0%
CAAAGTTTGGCTGTGAATTG+TGG + chr7_4:13521438-13521457 None:intergenic 40.0%
!! GGGCAATTTTGGTAACAAGA+TGG + chr7_4:13521465-13521484 None:intergenic 40.0%
CAGCAGCCAAATTGAAGTAA+AGG + chr7_4:13521500-13521519 None:intergenic 40.0%
CTTTACTTCAATTTGGCTGC+TGG - chr7_4:13521498-13521517 Msa1140930:intron 40.0%
TTACTTCAATTTGGCTGCTG+GGG - chr7_4:13521500-13521519 Msa1140930:intron 40.0%
AATTGGGCCATAGTGATTTG+TGG - chr7_4:13521637-13521656 Msa1140930:intron 40.0%
! ACTTTGTTTACAGGGGAGAA+GGG + chr7_4:13522178-13522197 None:intergenic 40.0%
! TACTTTGTTTACAGGGGAGA+AGG + chr7_4:13522179-13522198 None:intergenic 40.0%
TGGAAAAGGAACCAAAGACT+TGG + chr7_4:13520892-13520911 None:intergenic 40.0%
CGAAGGATGCATGGATAAAA+AGG + chr7_4:13521068-13521087 None:intergenic 40.0%
TCCTTCTCAATAGCTTCTTC+AGG - chr7_4:13521237-13521256 Msa1140930:intron 40.0%
TCCTGAAGAAGCTATTGAGA+AGG + chr7_4:13521241-13521260 None:intergenic 40.0%
TTCAGGAAAACGGTGTTTGT+TGG - chr7_4:13521254-13521273 Msa1140930:intron 40.0%
TACCAATGTAGGACATCAGA+AGG - chr7_4:13521309-13521328 Msa1140930:intron 40.0%
GATCAATGTGTGAATGCTTG+TGG - chr7_4:13521366-13521385 Msa1140930:intron 40.0%
CAAAGTTTGGCTGTGAATTG+TGG + chr7_4:13521438-13521457 None:intergenic 40.0%
!! GGGCAATTTTGGTAACAAGA+TGG + chr7_4:13521465-13521484 None:intergenic 40.0%
CAGCAGCCAAATTGAAGTAA+AGG + chr7_4:13521500-13521519 None:intergenic 40.0%
CTTTACTTCAATTTGGCTGC+TGG - chr7_4:13521498-13521517 Msa1140930:intron 40.0%
TTACTTCAATTTGGCTGCTG+GGG - chr7_4:13521500-13521519 Msa1140930:intron 40.0%
AATTGGGCCATAGTGATTTG+TGG - chr7_4:13521637-13521656 Msa1140930:intron 40.0%
! ACTTTGTTTACAGGGGAGAA+GGG + chr7_4:13522178-13522197 None:intergenic 40.0%
! TACTTTGTTTACAGGGGAGA+AGG + chr7_4:13522179-13522198 None:intergenic 40.0%
GTATATGGTGTGTGTACCGA+AGG + chr7_4:13521085-13521104 None:intergenic 45.0%
TACAGCTGAAGTTGTGTGTG+AGG - chr7_4:13521194-13521213 Msa1140930:CDS 45.0%
TGTGTGTGAGGAGTTGCAAA+AGG - chr7_4:13521206-13521225 Msa1140930:intron 45.0%
! GTGTTTGTTGGAGACAGAGA+AGG - chr7_4:13521266-13521285 Msa1140930:intron 45.0%
CTCCTTCTGATGTCCTACAT+TGG + chr7_4:13521314-13521333 None:intergenic 45.0%
ATGTAGGACATCAGAAGGAG+TGG - chr7_4:13521314-13521333 Msa1140930:intron 45.0%
TTGTGGCTCAAGCAATGCAT+CGG + chr7_4:13521421-13521440 None:intergenic 45.0%
! TTTTGCATCTCACAGAGGTC+AGG + chr7_4:13522059-13522078 None:intergenic 45.0%
! TGGTCTTTTGCATCTCACAG+AGG + chr7_4:13522064-13522083 None:intergenic 45.0%
CTTGTGACAGAGCAGAAACA+GGG + chr7_4:13522136-13522155 None:intergenic 45.0%
TCTTGTGACAGAGCAGAAAC+AGG + chr7_4:13522137-13522156 None:intergenic 45.0%
! CTTTGTTTACAGGGGAGAAG+GGG + chr7_4:13522177-13522196 None:intergenic 45.0%
GTATATGGTGTGTGTACCGA+AGG + chr7_4:13521085-13521104 None:intergenic 45.0%
TACAGCTGAAGTTGTGTGTG+AGG - chr7_4:13521194-13521213 Msa1140930:CDS 45.0%
TGTGTGTGAGGAGTTGCAAA+AGG - chr7_4:13521206-13521225 Msa1140930:intron 45.0%
! GTGTTTGTTGGAGACAGAGA+AGG - chr7_4:13521266-13521285 Msa1140930:intron 45.0%
CTCCTTCTGATGTCCTACAT+TGG + chr7_4:13521314-13521333 None:intergenic 45.0%
ATGTAGGACATCAGAAGGAG+TGG - chr7_4:13521314-13521333 Msa1140930:intron 45.0%
TTGTGGCTCAAGCAATGCAT+CGG + chr7_4:13521421-13521440 None:intergenic 45.0%
! TTTTGCATCTCACAGAGGTC+AGG + chr7_4:13522059-13522078 None:intergenic 45.0%
! TGGTCTTTTGCATCTCACAG+AGG + chr7_4:13522064-13522083 None:intergenic 45.0%
CTTGTGACAGAGCAGAAACA+GGG + chr7_4:13522136-13522155 None:intergenic 45.0%
TCTTGTGACAGAGCAGAAAC+AGG + chr7_4:13522137-13522156 None:intergenic 45.0%
! CTTTGTTTACAGGGGAGAAG+GGG + chr7_4:13522177-13522196 None:intergenic 45.0%
TGTGTGTACCGAAGGATGCA+TGG + chr7_4:13521077-13521096 None:intergenic 50.0%
TAGGACATCAGAAGGAGTGG+TGG - chr7_4:13521317-13521336 Msa1140930:intron 50.0%
TTCAATTTGGCTGCTGGGGA+AGG - chr7_4:13521504-13521523 Msa1140930:intron 50.0%
ATGATCGAGCTTGTGAGCTC+TGG - chr7_4:13522098-13522117 Msa1140930:intron 50.0%
TGTGTGTACCGAAGGATGCA+TGG + chr7_4:13521077-13521096 None:intergenic 50.0%
TAGGACATCAGAAGGAGTGG+TGG - chr7_4:13521317-13521336 Msa1140930:intron 50.0%
TTCAATTTGGCTGCTGGGGA+AGG - chr7_4:13521504-13521523 Msa1140930:intron 50.0%
ATGATCGAGCTTGTGAGCTC+TGG - chr7_4:13522098-13522117 Msa1140930:intron 50.0%
GTGGGGTCGAGTACCAATGT+AGG - chr7_4:13521298-13521317 Msa1140930:intron 55.0%
! AGAAGGAGTGGTGGAGCGAA+TGG - chr7_4:13521326-13521345 Msa1140930:intron 55.0%
GATCATAGCGCGATGAGGGT+TGG + chr7_4:13522084-13522103 None:intergenic 55.0%
GCTCGATCATAGCGCGATGA+GGG + chr7_4:13522088-13522107 None:intergenic 55.0%
AGCTCGATCATAGCGCGATG+AGG + chr7_4:13522089-13522108 None:intergenic 55.0%
GTGGGGTCGAGTACCAATGT+AGG - chr7_4:13521298-13521317 Msa1140930:intron 55.0%
! AGAAGGAGTGGTGGAGCGAA+TGG - chr7_4:13521326-13521345 Msa1140930:intron 55.0%
GATCATAGCGCGATGAGGGT+TGG + chr7_4:13522084-13522103 None:intergenic 55.0%
GCTCGATCATAGCGCGATGA+GGG + chr7_4:13522088-13522107 None:intergenic 55.0%
AGCTCGATCATAGCGCGATG+AGG + chr7_4:13522089-13522108 None:intergenic 55.0%
GTTGGAGACAGAGAAGGCCG+CGG - chr7_4:13521272-13521291 Msa1140930:intron 60.0%
! AGGAGTGGTGGAGCGAATGG+CGG - chr7_4:13521329-13521348 Msa1140930:intron 60.0%
GACAGAGCAGAAACAGGGCC+AGG + chr7_4:13522131-13522150 None:intergenic 60.0%
GTTGGAGACAGAGAAGGCCG+CGG - chr7_4:13521272-13521291 Msa1140930:intron 60.0%
! AGGAGTGGTGGAGCGAATGG+CGG - chr7_4:13521329-13521348 Msa1140930:intron 60.0%
GACAGAGCAGAAACAGGGCC+AGG + chr7_4:13522131-13522150 None:intergenic 60.0%
GAGACAGAGAAGGCCGCGGA+TGG - chr7_4:13521276-13521295 Msa1140930:intron 65.0%
ACAGAGAAGGCCGCGGATGG+TGG - chr7_4:13521279-13521298 Msa1140930:intron 65.0%
CAGAGAAGGCCGCGGATGGT+GGG - chr7_4:13521280-13521299 Msa1140930:intron 65.0%
AGAGAAGGCCGCGGATGGTG+GGG - chr7_4:13521281-13521300 Msa1140930:intron 65.0%
GTACTCGACCCCACCATCCG+CGG + chr7_4:13521292-13521311 None:intergenic 65.0%
! GGAGTGGTGGAGCGAATGGC+GGG - chr7_4:13521330-13521349 Msa1140930:intron 65.0%
!! GTGAGCTCTGGAGCTGCACC+TGG - chr7_4:13522110-13522129 Msa1140930:intron 65.0%
GAGACAGAGAAGGCCGCGGA+TGG - chr7_4:13521276-13521295 Msa1140930:intron 65.0%
ACAGAGAAGGCCGCGGATGG+TGG - chr7_4:13521279-13521298 Msa1140930:intron 65.0%
CAGAGAAGGCCGCGGATGGT+GGG - chr7_4:13521280-13521299 Msa1140930:intron 65.0%
AGAGAAGGCCGCGGATGGTG+GGG - chr7_4:13521281-13521300 Msa1140930:intron 65.0%
GTACTCGACCCCACCATCCG+CGG + chr7_4:13521292-13521311 None:intergenic 65.0%
! GGAGTGGTGGAGCGAATGGC+GGG - chr7_4:13521330-13521349 Msa1140930:intron 65.0%
!! GTGAGCTCTGGAGCTGCACC+TGG - chr7_4:13522110-13522129 Msa1140930:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 13520867 13522402 13520867 ID=Msa1140930;Name=Msa1140930
chr7_4 mRNA 13520867 13522402 13520867 ID=Msa1140930-mRNA-1;Parent=Msa1140930;Name=Msa1140930-mRNA-1;_AED=0.16;_eAED=0.16;_QI=154|1|1|1|0.5|0.66|3|212|179
chr7_4 exon 13520867 13521224 13520867 ID=Msa1140930-mRNA-1:exon:3210;Parent=Msa1140930-mRNA-1
chr7_4 exon 13521744 13522070 13521744 ID=Msa1140930-mRNA-1:exon:3209;Parent=Msa1140930-mRNA-1
chr7_4 exon 13522182 13522402 13522182 ID=Msa1140930-mRNA-1:exon:3208;Parent=Msa1140930-mRNA-1
chr7_4 five_prime_UTR 13522249 13522402 13522249 ID=Msa1140930-mRNA-1:five_prime_utr;Parent=Msa1140930-mRNA-1
chr7_4 CDS 13522182 13522248 13522182 ID=Msa1140930-mRNA-1:cds;Parent=Msa1140930-mRNA-1
chr7_4 CDS 13521744 13522070 13521744 ID=Msa1140930-mRNA-1:cds;Parent=Msa1140930-mRNA-1
chr7_4 CDS 13521079 13521224 13521079 ID=Msa1140930-mRNA-1:cds;Parent=Msa1140930-mRNA-1
chr7_4 three_prime_UTR 13520867 13521078 13520867 ID=Msa1140930-mRNA-1:three_prime_utr;Parent=Msa1140930-mRNA-1
Gene Sequence

>Msa1140930

ATGTCTTTCTCATCCAAATTACCTTTGATTATGCTCTTGTGTTCCCTTTTTATCCATGCATCCTTCGCTGAAGTTGTGTGTGAGGAGTTGCAAAAGGATCTACGTTCCTTCTCAATAGCTTCTTCAGGAAAACGGTGTTTGTTGGAGACAGAGAAGGCCGCGGATGGTGGGGTCGAGTACCAATGTAGGACATCAGAAGGAGTGGTGGAGCGAATGGCGGGATACATAGAGACAGATCAATGTGTGAATGCTTGTGGAGTTGAAAGAAATTTTGTTGGAATTTCTTCCGATGCATTGCTTGAGCCACAATTCACAGCCAAACTTTGTTCACCATCTTGTTACCAAAATTGCCCCAATATTTTTGACCTTTACTTCAATTTGGCTGCTGGGGAAGGTGTGTTTTTGCCTGACCTCTGTGAGATGCAAAAGACCAACCCTCATCGCGCTATGATCGAGCTTGTGAGCTCTGGAGCTGCACCTGGCCCTGTTTCTGCTCTGTCACAAGACAAGCATGCAGCATTTGCCCCTTCTCCCCTGTAA

Protein sequence

>Msa1140930

MSFSSKLPLIMLLCSLFIHASFAEVVCEELQKDLRSFSIASSGKRCLLETEKAADGGVEYQCRTSEGVVERMAGYIETDQCVNACGVERNFVGISSDALLEPQFTAKLCSPSCYQNCPNIFDLYFNLAAGEGVFLPDLCEMQKTNPHRAMIELVSSGAAPGPVSALSQDKHAAFAPSPL*