AlfalfaGEDB | Msa1140930

M. sativa cultivar zhongmu-4 / Msa1140930

KEGG: -
GO: -
PFAM: PF06521.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140930	XP_013449050.2	91.620	179	15	0	1	179	1	179	4.42e-116	337

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140930	A0A396H0Q3	91.620	179	15	0	1	179	1	179	2.11e-116	337

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004180	Msa1140930	-0.802210	6.249098e-49	-8.615850e-47
Msa0011010	Msa1140930	0.820813	5.626133e-53	-8.615850e-47
Msa0011040	Msa1140930	0.808551	2.929880e-50	-8.615850e-47
Msa0016380	Msa1140930	-0.801158	1.027367e-48	-8.615850e-47
Msa0021240	Msa1140930	-0.809086	2.251358e-50	-8.615850e-47
Msa0021400	Msa1140930	0.829000	6.575242e-55	-8.615850e-47
Msa0021870	Msa1140930	0.802968	4.361372e-49	-8.615850e-47
Msa0024650	Msa1140930	0.853917	1.740500e-61	-8.615850e-47
Msa0025570	Msa1140930	0.816388	5.675154e-52	-8.615850e-47
Msa0027030	Msa1140930	-0.800050	1.728698e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140930	MtrunA17_Chr7g0241061	91.620	179	15	0	1	179	1	179	4.07e-120	337
Msa1140930	MtrunA17_Chr4g0008131	71.598	169	48	0	1	169	1	169	1.37e-86	253
Msa1140930	MtrunA17_Chr4g0008141	68.539	178	56	0	1	178	1	178	3.45e-83	243
Msa1140930	MtrunA17_Chr4g0008121	68.508	181	55	1	1	179	1	181	1.97e-78	233
Msa1140930	MtrunA17_Chr1g0203171	51.923	156	74	1	12	166	15	170	6.19e-53	167
Msa1140930	MtrunA17_Chr6g0472041	47.953	171	85	2	7	176	4	171	1.06e-52	166

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1140930	AT3G54040.1	56.667	180	72	4	1	178	1	176	6.81e-65	197
Msa1140930	AT3G54040.2	59.172	169	63	4	1	167	57	221	3.53e-64	197
Msa1140930	AT5G52390.1	44.134	179	99	1	1	178	1	179	3.42e-49	158

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Find 66 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAGAATATATGGTT+TGG	0.438879	7_4:+13522315	None:intergenic
AAAGACATGATTTAAAATTC+TGG	0.259382	7_4:+13522241	None:intergenic
AACAATAATTTGTTGGTACT+CGG	0.502054	7_4:-13520937	Msa1140930:three_prime_UTR
AAGATATGTGAACAACTATG+TGG	0.642120	7_4:+13522338	None:intergenic
ACAAGATGGTGAACAAAGTT+TGG	0.401861	7_4:+13521799	None:intergenic
ACAGAGAAGGCCGCGGATGG+TGG	0.484397	7_4:-13521968	Msa1140930:CDS
ACTTTGTTTACAGGGGAGAA+GGG	0.526118	7_4:+13521072	None:intergenic
AGAAGGAGTGGTGGAGCGAA+TGG	0.552608	7_4:-13521921	Msa1140930:CDS
AGAGAAGGCCGCGGATGGTG+GGG	0.526485	7_4:-13521966	Msa1140930:CDS
AGCTCGATCATAGCGCGATG+AGG	0.572301	7_4:+13521161	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTATATATAACCAAGTCTT+TGG	-	chr7_4:13520878-13520897	Msa1140930:three_prime_UTR	30.0%
AAGATATGTGAACAACTATG+TGG	+	chr7_4:13520912-13520931	None:intergenic	30.0%
GAGCATAATCAAAGGTAATT+TGG	+	chr7_4:13521037-13521056	None:intergenic	30.0%
CCAAAATAAAGTGAAAGCTT+AGG	+	chr7_4:13522203-13522222	None:intergenic	30.0%
ATACATGTGACTGCATTATT+TGG	-	chr7_4:13522378-13522397	Msa1140930:five_prime_UTR	30.0%
TACATGTGACTGCATTATTT+GGG	-	chr7_4:13522379-13522398	Msa1140930:five_prime_UTR	30.0%
CCTATATATAACCAAGTCTT+TGG	-	chr7_4:13520878-13520897	Msa1140930:three_prime_UTR	30.0%
AAGATATGTGAACAACTATG+TGG	+	chr7_4:13520912-13520931	None:intergenic	30.0%
GAGCATAATCAAAGGTAATT+TGG	+	chr7_4:13521037-13521056	None:intergenic	30.0%
CCAAAATAAAGTGAAAGCTT+AGG	+	chr7_4:13522203-13522222	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	13520867	13522402	13520867	ID=Msa1140930;Name=Msa1140930
chr7_4	mRNA	13520867	13522402	13520867	ID=Msa1140930-mRNA-1;Parent=Msa1140930;Name=Msa1140930-mRNA-1;_AED=0.16;_eAED=0.16;_QI=154\|1\|1\|1\|0.5\|0.66\|3\|212\|179
chr7_4	exon	13520867	13521224	13520867	ID=Msa1140930-mRNA-1:exon:3210;Parent=Msa1140930-mRNA-1
chr7_4	exon	13521744	13522070	13521744	ID=Msa1140930-mRNA-1:exon:3209;Parent=Msa1140930-mRNA-1
chr7_4	exon	13522182	13522402	13522182	ID=Msa1140930-mRNA-1:exon:3208;Parent=Msa1140930-mRNA-1
chr7_4	five_prime_UTR	13522249	13522402	13522249	ID=Msa1140930-mRNA-1:five_prime_utr;Parent=Msa1140930-mRNA-1
chr7_4	CDS	13522182	13522248	13522182	ID=Msa1140930-mRNA-1:cds;Parent=Msa1140930-mRNA-1
chr7_4	CDS	13521744	13522070	13521744	ID=Msa1140930-mRNA-1:cds;Parent=Msa1140930-mRNA-1
chr7_4	CDS	13521079	13521224	13521079	ID=Msa1140930-mRNA-1:cds;Parent=Msa1140930-mRNA-1
chr7_4	three_prime_UTR	13520867	13521078	13520867	ID=Msa1140930-mRNA-1:three_prime_utr;Parent=Msa1140930-mRNA-1

Gene Sequence

>Msa1140930

ATGTCTTTCTCATCCAAATTACCTTTGATTATGCTCTTGTGTTCCCTTTTTATCCATGCATCCTTCGCTGAAGTTGTGTGTGAGGAGTTGCAAAAGGATCTACGTTCCTTCTCAATAGCTTCTTCAGGAAAACGGTGTTTGTTGGAGACAGAGAAGGCCGCGGATGGTGGGGTCGAGTACCAATGTAGGACATCAGAAGGAGTGGTGGAGCGAATGGCGGGATACATAGAGACAGATCAATGTGTGAATGCTTGTGGAGTTGAAAGAAATTTTGTTGGAATTTCTTCCGATGCATTGCTTGAGCCACAATTCACAGCCAAACTTTGTTCACCATCTTGTTACCAAAATTGCCCCAATATTTTTGACCTTTACTTCAATTTGGCTGCTGGGGAAGGTGTGTTTTTGCCTGACCTCTGTGAGATGCAAAAGACCAACCCTCATCGCGCTATGATCGAGCTTGTGAGCTCTGGAGCTGCACCTGGCCCTGTTTCTGCTCTGTCACAAGACAAGCATGCAGCATTTGCCCCTTCTCCCCTGTAA

Protein sequence

>Msa1140930

MSFSSKLPLIMLLCSLFIHASFAEVVCEELQKDLRSFSIASSGKRCLLETEKAADGGVEYQCRTSEGVVERMAGYIETDQCVNACGVERNFVGISSDALLEPQFTAKLCSPSCYQNCPNIFDLYFNLAAGEGVFLPDLCEMQKTNPHRAMIELVSSGAAPGPVSALSQDKHAAFAPSPL*