Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093500 | KAG5240291.1 | 57.407 | 54 | 23 | 0 | 147 | 200 | 27 | 80 | 3.16e-11 | 68.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1093500 | A0A836DW95 | 57.407 | 54 | 23 | 0 | 147 | 200 | 27 | 80 | 1.51e-11 | 68.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087910 | Msa1093500 | 0.800297 | 1.539903e-48 | -8.615850e-47 |
| Msa0114600 | Msa1093500 | 0.801861 | 7.373455e-49 | -8.615850e-47 |
| Msa0602900 | Msa1093500 | 0.826055 | 3.346045e-54 | -8.615850e-47 |
| Msa0605890 | Msa1093500 | 0.856443 | 3.205601e-62 | -8.615850e-47 |
| Msa0619230 | Msa1093500 | 0.828002 | 1.144962e-54 | -8.615850e-47 |
| Msa0643960 | Msa1093500 | 0.822975 | 1.776963e-53 | -8.615850e-47 |
| Msa0649890 | Msa1093500 | 0.837487 | 5.049032e-57 | -8.615850e-47 |
| Msa0656450 | Msa1093500 | 0.802847 | 4.619225e-49 | -8.615850e-47 |
| Msa0663400 | Msa1093500 | 0.838655 | 2.528074e-57 | -8.615850e-47 |
| Msa0686550 | Msa1093500 | 0.805025 | 1.629224e-49 | -8.615850e-47 |
| Msa0694400 | Msa1093500 | 0.860757 | 1.653295e-63 | -8.615850e-47 |
| Msa0704860 | Msa1093500 | 0.825556 | 4.394368e-54 | -8.615850e-47 |
| Msa0741510 | Msa1093500 | 0.833515 | 5.102510e-56 | -8.615850e-47 |
| Msa0749000 | Msa1093500 | 0.811502 | 6.779956e-51 | -8.615850e-47 |
| Msa0796490 | Msa1093500 | 0.825957 | 3.530822e-54 | -8.615850e-47 |
| Msa0128330 | Msa1093500 | 0.885659 | 6.719665e-72 | -8.615850e-47 |
| Msa0136400 | Msa1093500 | 0.812049 | 5.155502e-51 | -8.615850e-47 |
| Msa0167860 | Msa1093500 | 0.865885 | 4.266367e-65 | -8.615850e-47 |
| Msa0174580 | Msa1093500 | 0.887127 | 1.873581e-72 | -8.615850e-47 |
| Msa0182100 | Msa1093500 | 0.806194 | 9.261917e-50 | -8.615850e-47 |
| Msa0191550 | Msa1093500 | 0.802620 | 5.144710e-49 | -8.615850e-47 |
| Msa0235050 | Msa1093500 | 0.801299 | 9.612740e-49 | -8.615850e-47 |
| Msa0426250 | Msa1093500 | 0.833567 | 4.953311e-56 | -8.615850e-47 |
| Msa0450150 | Msa1093500 | 0.812115 | 4.985600e-51 | -8.615850e-47 |
| Msa0468440 | Msa1093500 | 0.821136 | 4.740685e-53 | -8.615850e-47 |
| Msa0482560 | Msa1093500 | 0.802748 | 4.842984e-49 | -8.615850e-47 |
| Msa1013430 | Msa1093500 | 0.942055 | 1.413147e-101 | -8.615850e-47 |
| Msa1079910 | Msa1093500 | 0.875425 | 3.114036e-68 | -8.615850e-47 |
| Msa1079920 | Msa1093500 | 0.800167 | 1.636398e-48 | -8.615850e-47 |
| Msa1080390 | Msa1093500 | 0.801634 | 8.207279e-49 | -8.615850e-47 |
| Msa1093500 | Msa1124850 | 0.813199 | 2.889018e-51 | -8.615850e-47 |
| Msa1093500 | Msa1125900 | 0.801537 | 8.591806e-49 | -8.615850e-47 |
| Msa1093500 | Msa1126100 | 0.804633 | 1.967024e-49 | -8.615850e-47 |
| Msa1093500 | Msa1180000 | 0.832655 | 8.352860e-56 | -8.615850e-47 |
| Msa1093500 | Msa1270640 | 0.826080 | 3.300226e-54 | -8.615850e-47 |
| Msa1093500 | Msa1270710 | 0.828027 | 1.129088e-54 | -8.615850e-47 |
| Msa1093500 | Msa1344160 | 0.818471 | 1.926982e-52 | -8.615850e-47 |
| Msa1093500 | Msa1344190 | 0.815754 | 7.861471e-52 | -8.615850e-47 |
| Msa1093500 | Msa1351020 | 0.848922 | 4.500698e-60 | -8.615850e-47 |
| Msa1093500 | Msa1351910 | 0.802151 | 6.428808e-49 | -8.615850e-47 |
| Msa1093500 | Msa1385480 | 0.870816 | 1.096065e-66 | -8.615850e-47 |
| Msa1093500 | Msa1390760 | 0.826763 | 2.269341e-54 | -8.615850e-47 |
| Msa1093500 | Msa1407550 | 0.842700 | 2.203067e-58 | -8.615850e-47 |
| Msa1093500 | Msa1413570 | 0.809347 | 1.978996e-50 | -8.615850e-47 |
| Msa1093500 | Msa1432310 | 0.839075 | 1.967708e-57 | -8.615850e-47 |
| Msa1093500 | Msa1462580 | 0.820897 | 5.381227e-53 | -8.615850e-47 |
| Msa1093500 | Msa1463570 | 0.877250 | 7.308286e-69 | -8.615850e-47 |
| Msa0277600 | Msa1093500 | 0.856108 | 4.019216e-62 | -8.615850e-47 |
| Msa0313060 | Msa1093500 | 0.808763 | 2.639887e-50 | -8.615850e-47 |
| Msa0315430 | Msa1093500 | 0.832607 | 8.584372e-56 | -8.615850e-47 |
| Msa0547920 | Msa1093500 | 0.830776 | 2.427832e-55 | -8.615850e-47 |
| Msa0552510 | Msa1093500 | 0.810603 | 1.061907e-50 | -8.615850e-47 |
| Msa0568380 | Msa1093500 | 0.839672 | 1.377132e-57 | -8.615850e-47 |
| Msa0573550 | Msa1093500 | 0.829457 | 5.093335e-55 | -8.615850e-47 |
| Msa0574780 | Msa1093500 | 0.830817 | 2.371545e-55 | -8.615850e-47 |
| Msa0579830 | Msa1093500 | 0.851720 | 7.382829e-61 | -8.615850e-47 |
| Msa0585570 | Msa1093500 | 0.832788 | 7.739178e-56 | -8.615850e-47 |
| Msa0902730 | Msa1093500 | 0.981297 | 3.010708e-152 | -8.615850e-47 |
| Msa0929700 | Msa1093500 | 0.818003 | 2.458272e-52 | -8.615850e-47 |
| Msa0930890 | Msa1093500 | 0.841164 | 5.611091e-58 | -8.615850e-47 |
| Msa0978470 | Msa1093500 | 0.804360 | 2.242828e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCTGCGGTTTCAAAATT+TGG | 0.155133 | 7_3:+13450389 | None:intergenic |
| GCCACTGCATCTTCAGAATT+AGG | 0.220908 | 7_3:-13449296 | Msa1093500:CDS |
| GAAGTGTGGCGGTGCCTCTT+TGG | 0.285127 | 7_3:+13449187 | None:intergenic |
| AGGGTTGAAAACGGAAGATT+TGG | 0.316088 | 7_3:-13450291 | Msa1093500:CDS |
| GTTCTGCGGTTTCAAAATTT+GGG | 0.353472 | 7_3:+13450390 | None:intergenic |
| CTCTTAATCTGCTGTTAAGT+TGG | 0.363168 | 7_3:+13450796 | None:intergenic |
| ATCATAAACAGCAGAATTGA+TGG | 0.369582 | 7_3:+13448768 | None:intergenic |
| TCAACCCTTGCCGCCGGCGA+AGG | 0.373521 | 7_3:+13450306 | None:intergenic |
| TCTGAAGATGCAGTGGCTCT+AGG | 0.431928 | 7_3:+13449302 | None:intergenic |
| TTACTTTGATATACGCGATC+TGG | 0.437927 | 7_3:+13450443 | None:intergenic |
| CCCTTGCCGCCGGCGAAGGG+TGG | 0.442804 | 7_3:+13450310 | None:intergenic |
| GACGGGATGGAGGGGCGGCG+AGG | 0.448992 | 7_3:-13450264 | Msa1093500:CDS |
| ATGTTTGCAAGCACGGAACT+TGG | 0.457129 | 7_3:-13450742 | Msa1093500:CDS |
| ACCGCCACACTTCCACCAAA+GGG | 0.460737 | 7_3:-13449177 | Msa1093500:CDS |
| ACGGGATGGAGGGGCGGCGA+GGG | 0.470478 | 7_3:-13450263 | Msa1093500:intron |
| ATTTGAGATGTTTGCAAGCA+CGG | 0.481705 | 7_3:-13450749 | Msa1093500:CDS |
| CTGAAGATGCAGTGGCTCTA+GGG | 0.484040 | 7_3:+13449303 | None:intergenic |
| TGCTGTTAAGTTGGTTCGCG+TGG | 0.489946 | 7_3:+13450805 | None:intergenic |
| AACGGAAGATTTGGATTCGA+CGG | 0.494495 | 7_3:-13450282 | Msa1093500:CDS |
| CGCTCACAACCAGTCTTACA+AGG | 0.508995 | 7_3:-13449233 | Msa1093500:CDS |
| ACGGAAGATTTGGATTCGAC+GGG | 0.516318 | 7_3:-13450281 | Msa1093500:CDS |
| ATGATGAATACATACCCCTT+TGG | 0.517971 | 7_3:+13449162 | None:intergenic |
| CACCGCCACACTTCCACCAA+AGG | 0.519273 | 7_3:-13449178 | Msa1093500:CDS |
| AAACATCTCAAATTGTGCAT+TGG | 0.528513 | 7_3:+13450759 | None:intergenic |
| TTTGGATTCGACGGGATGGA+GGG | 0.536552 | 7_3:-13450273 | Msa1093500:CDS |
| ATAACAGAGCCACCCTTCGC+CGG | 0.541157 | 7_3:-13450319 | Msa1093500:CDS |
| ATTTGGATTCGACGGGATGG+AGG | 0.544338 | 7_3:-13450274 | Msa1093500:CDS |
| ATGAATACATACCCCTTTGG+TGG | 0.547453 | 7_3:+13449165 | None:intergenic |
| GATTCGACGGGATGGAGGGG+CGG | 0.553512 | 7_3:-13450269 | Msa1093500:CDS |
| AAGATTTGGATTCGACGGGA+TGG | 0.561564 | 7_3:-13450277 | Msa1093500:CDS |
| GACGGTTCGTCGAGGTTCTG+CGG | 0.580529 | 7_3:+13450376 | None:intergenic |
| CCGGCGGCAAGGGTTGAAAA+CGG | 0.585127 | 7_3:-13450300 | Msa1093500:CDS |
| ACCTAATTCTGAAGATGCAG+TGG | 0.589479 | 7_3:+13449295 | None:intergenic |
| TTGGATTCGACGGGATGGAG+GGG | 0.602639 | 7_3:-13450272 | Msa1093500:CDS |
| GGTTTGTTGAATTTCAGAGA+TGG | 0.605195 | 7_3:-13449275 | Msa1093500:CDS |
| ATGGCATCAAGAAGCCAAAG+AGG | 0.617235 | 7_3:-13449201 | Msa1093500:CDS |
| ATACCCCTTTGGTGGAAGTG+TGG | 0.622392 | 7_3:+13449173 | None:intergenic |
| ACAGAGCCACCCTTCGCCGG+CGG | 0.622991 | 7_3:-13450316 | Msa1093500:CDS |
| CACACAATCGAAAATGAGTG+TGG | 0.630646 | 7_3:+13448706 | None:intergenic |
| CCCCTTTGGTGGAAGTGTGG+CGG | 0.635065 | 7_3:+13449176 | None:intergenic |
| TGTTCGGTGACGGTTCGTCG+AGG | 0.635846 | 7_3:+13450368 | None:intergenic |
| GGCTCTGTTATAACGAACCA+CGG | 0.640149 | 7_3:+13450331 | None:intergenic |
| TGATGCTGAAAGTGAGCTGT+GGG | 0.640992 | 7_3:-13448743 | Msa1093500:CDS |
| TTGATGCTGAAAGTGAGCTG+TGG | 0.659134 | 7_3:-13448744 | Msa1093500:CDS |
| CCGCCACACTTCCACCAAAG+GGG | 0.674155 | 7_3:-13449176 | Msa1093500:intron |
| CTTGTAAGACTGGTTGTGAG+CGG | 0.674336 | 7_3:+13449234 | None:intergenic |
| GGTGAGTTCGACCGCCAACA+CGG | 0.678143 | 7_3:-13450840 | Msa1093500:CDS |
| ACAAAACGATCTGACCGCCG+TGG | 0.730426 | 7_3:-13450348 | Msa1093500:CDS |
| TCTGTTATAACGAACCACGG+CGG | 0.817339 | 7_3:+13450334 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGTATTTTTTTTTTGAA+AGG | + | chr7_3:13449422-13449441 | None:intergenic | 10.0% |
| !!! | TATTATATTTTGATAATTCA+AGG | - | chr7_3:13449991-13450010 | Msa1093500:intron | 10.0% |
| !!! | AAAGAATTTTTTTTTTTTGA+GGG | - | chr7_3:13450065-13450084 | Msa1093500:intron | 10.0% |
| !!! | TAAAGTATTTTTTTTTTGAA+AGG | + | chr7_3:13449422-13449441 | None:intergenic | 10.0% |
| !!! | TATTATATTTTGATAATTCA+AGG | - | chr7_3:13449991-13450010 | Msa1093500:intron | 10.0% |
| !!! | AAAGAATTTTTTTTTTTTGA+GGG | - | chr7_3:13450065-13450084 | Msa1093500:intron | 10.0% |
| !!! | ATATGTTTATTTTTTATAGG+TGG | - | chr7_3:13449364-13449383 | Msa1093500:intron | 15.0% |
| !!! | GAAATGTATTTTTTTTTTTG+TGG | + | chr7_3:13449636-13449655 | None:intergenic | 15.0% |
| !!! | GAAAGAATTTTTTTTTTTTG+AGG | - | chr7_3:13450064-13450083 | Msa1093500:intron | 15.0% |
| !!! | TGATCTTTAAAAGTTTTAAA+CGG | - | chr7_3:13450155-13450174 | Msa1093500:intron | 15.0% |
| !! | TTTATAATTCATGTTATGTA+TGG | - | chr7_3:13450649-13450668 | Msa1093500:intron | 15.0% |
| !!! | ATATGTTTATTTTTTATAGG+TGG | - | chr7_3:13449364-13449383 | Msa1093500:intron | 15.0% |
| !!! | GAAATGTATTTTTTTTTTTG+TGG | + | chr7_3:13449636-13449655 | None:intergenic | 15.0% |
| !!! | GAAAGAATTTTTTTTTTTTG+AGG | - | chr7_3:13450064-13450083 | Msa1093500:intron | 15.0% |
| !!! | TGATCTTTAAAAGTTTTAAA+CGG | - | chr7_3:13450155-13450174 | Msa1093500:intron | 15.0% |
| !! | TTTATAATTCATGTTATGTA+TGG | - | chr7_3:13450649-13450668 | Msa1093500:intron | 15.0% |
| !!! | CATTTTTTAATGTGAATAAG+CGG | - | chr7_3:13449486-13449505 | Msa1093500:intron | 20.0% |
| !!! | ATTTTTTAATGTGAATAAGC+GGG | - | chr7_3:13449487-13449506 | Msa1093500:intron | 20.0% |
| !! | GACATGTATTGTTATATATA+GGG | + | chr7_3:13449536-13449555 | None:intergenic | 20.0% |
| !! | TGACATGTATTGTTATATAT+AGG | + | chr7_3:13449537-13449556 | None:intergenic | 20.0% |
| !!! | ATGTATTTTTTTTTTTGTGG+TGG | + | chr7_3:13449633-13449652 | None:intergenic | 20.0% |
| !! | CAATATTAACAAGATTTACA+AGG | - | chr7_3:13449845-13449864 | Msa1093500:intron | 20.0% |
| !! | ATAAAGCAATTAATTGAACA+TGG | - | chr7_3:13450124-13450143 | Msa1093500:intron | 20.0% |
| !!! | GTTTAAAACTTTTAAAGATC+AGG | + | chr7_3:13450156-13450175 | None:intergenic | 20.0% |
| !! | TGTATGTATATATATCTGTT+GGG | + | chr7_3:13450236-13450255 | None:intergenic | 20.0% |
| !!! | CATTTTTTAATGTGAATAAG+CGG | - | chr7_3:13449486-13449505 | Msa1093500:intron | 20.0% |
| !!! | ATTTTTTAATGTGAATAAGC+GGG | - | chr7_3:13449487-13449506 | Msa1093500:intron | 20.0% |
| !! | GACATGTATTGTTATATATA+GGG | + | chr7_3:13449536-13449555 | None:intergenic | 20.0% |
| !! | TGACATGTATTGTTATATAT+AGG | + | chr7_3:13449537-13449556 | None:intergenic | 20.0% |
| !!! | ATGTATTTTTTTTTTTGTGG+TGG | + | chr7_3:13449633-13449652 | None:intergenic | 20.0% |
| !! | CAATATTAACAAGATTTACA+AGG | - | chr7_3:13449845-13449864 | Msa1093500:intron | 20.0% |
| !! | ATAAAGCAATTAATTGAACA+TGG | - | chr7_3:13450124-13450143 | Msa1093500:intron | 20.0% |
| !!! | GTTTAAAACTTTTAAAGATC+AGG | + | chr7_3:13450156-13450175 | None:intergenic | 20.0% |
| !! | TGTATGTATATATATCTGTT+GGG | + | chr7_3:13450236-13450255 | None:intergenic | 20.0% |
| !!! | TTTTTTAATGTGAATAAGCG+GGG | - | chr7_3:13449488-13449507 | Msa1093500:intron | 25.0% |
| !!! | CATTCCATATCATTTTTTAG+AGG | + | chr7_3:13449874-13449893 | None:intergenic | 25.0% |
| !!! | ATTAATCTCTCAACTAGTTT+TGG | + | chr7_3:13449918-13449937 | None:intergenic | 25.0% |
| ! | GTATGTATATATATCTGTTG+GGG | + | chr7_3:13450235-13450254 | None:intergenic | 25.0% |
| ! | GTGTATGTATATATATCTGT+TGG | + | chr7_3:13450237-13450256 | None:intergenic | 25.0% |
| ! | ACAGATATATATACATACAC+AGG | - | chr7_3:13450237-13450256 | Msa1093500:intron | 25.0% |
| !!! | TTTTTTAATGTGAATAAGCG+GGG | - | chr7_3:13449488-13449507 | Msa1093500:intron | 25.0% |
| !!! | CATTCCATATCATTTTTTAG+AGG | + | chr7_3:13449874-13449893 | None:intergenic | 25.0% |
| !!! | ATTAATCTCTCAACTAGTTT+TGG | + | chr7_3:13449918-13449937 | None:intergenic | 25.0% |
| ! | GTATGTATATATATCTGTTG+GGG | + | chr7_3:13450235-13450254 | None:intergenic | 25.0% |
| ! | GTGTATGTATATATATCTGT+TGG | + | chr7_3:13450237-13450256 | None:intergenic | 25.0% |
| ! | ACAGATATATATACATACAC+AGG | - | chr7_3:13450237-13450256 | Msa1093500:intron | 25.0% |
| !!! | AAGCATTTTTTGACTGACAT+GGG | + | chr7_3:13448712-13448731 | None:intergenic | 30.0% |
| AGTCAAAAAATGCTTGAAAG+TGG | - | chr7_3:13448717-13448736 | Msa1093500:CDS | 30.0% | |
| AAACATCTCAAATTGTGCAT+TGG | + | chr7_3:13448825-13448844 | None:intergenic | 30.0% | |
| ATTGTTATATATAGGGATCG+AGG | + | chr7_3:13449529-13449548 | None:intergenic | 30.0% | |
| TGAGTTTAACTCAGTTAGTA+GGG | - | chr7_3:13449566-13449585 | Msa1093500:intron | 30.0% | |
| GACATTGCATAAAATATGCA+AGG | - | chr7_3:13449588-13449607 | Msa1093500:intron | 30.0% | |
| ! | GACTCCTCTAAAAAATGATA+TGG | - | chr7_3:13449867-13449886 | Msa1093500:intron | 30.0% |
| ATGACTAATACATAACACCA+AGG | - | chr7_3:13449891-13449910 | Msa1093500:intron | 30.0% | |
| TTGTGATTGATTACTGTAGA+TGG | - | chr7_3:13450506-13450525 | Msa1093500:intron | 30.0% | |
| ! | AGAATTGATGGTCTAAATTC+AGG | + | chr7_3:13450804-13450823 | None:intergenic | 30.0% |
| ATCATAAACAGCAGAATTGA+TGG | + | chr7_3:13450816-13450835 | None:intergenic | 30.0% | |
| !!! | AAGCATTTTTTGACTGACAT+GGG | + | chr7_3:13448712-13448731 | None:intergenic | 30.0% |
| AGTCAAAAAATGCTTGAAAG+TGG | - | chr7_3:13448717-13448736 | Msa1093500:CDS | 30.0% | |
| AAACATCTCAAATTGTGCAT+TGG | + | chr7_3:13448825-13448844 | None:intergenic | 30.0% | |
| ATTGTTATATATAGGGATCG+AGG | + | chr7_3:13449529-13449548 | None:intergenic | 30.0% | |
| TGAGTTTAACTCAGTTAGTA+GGG | - | chr7_3:13449566-13449585 | Msa1093500:intron | 30.0% | |
| GACATTGCATAAAATATGCA+AGG | - | chr7_3:13449588-13449607 | Msa1093500:intron | 30.0% | |
| ! | GACTCCTCTAAAAAATGATA+TGG | - | chr7_3:13449867-13449886 | Msa1093500:intron | 30.0% |
| ATGACTAATACATAACACCA+AGG | - | chr7_3:13449891-13449910 | Msa1093500:intron | 30.0% | |
| TTGTGATTGATTACTGTAGA+TGG | - | chr7_3:13450506-13450525 | Msa1093500:intron | 30.0% | |
| ! | AGAATTGATGGTCTAAATTC+AGG | + | chr7_3:13450804-13450823 | None:intergenic | 30.0% |
| ATCATAAACAGCAGAATTGA+TGG | + | chr7_3:13450816-13450835 | None:intergenic | 30.0% | |
| !!! | CAAGCATTTTTTGACTGACA+TGG | + | chr7_3:13448713-13448732 | None:intergenic | 35.0% |
| CAAAAAATGCTTGAAAGTGG+AGG | - | chr7_3:13448720-13448739 | Msa1093500:CDS | 35.0% | |
| CTCTTAATCTGCTGTTAAGT+TGG | + | chr7_3:13448788-13448807 | None:intergenic | 35.0% | |
| ! | ATTTGAGATGTTTGCAAGCA+CGG | - | chr7_3:13448832-13448851 | Msa1093500:intron | 35.0% |
| AAAAAAACAGCGAGCATACA+TGG | - | chr7_3:13448929-13448948 | Msa1093500:intron | 35.0% | |
| TTACTTTGATATACGCGATC+TGG | + | chr7_3:13449141-13449160 | None:intergenic | 35.0% | |
| !! | TTTTCTAGCAAGATCTGGAT+TGG | + | chr7_3:13449171-13449190 | None:intergenic | 35.0% |
| GTTCTGCGGTTTCAAAATTT+GGG | + | chr7_3:13449194-13449213 | None:intergenic | 35.0% | |
| !!! | GCGAGGGTTTATTTTTTACA+AGG | - | chr7_3:13449334-13449353 | Msa1093500:intron | 35.0% |
| ! | TTTTGTCAACTATAGCCTAG+TGG | - | chr7_3:13449453-13449472 | Msa1093500:intron | 35.0% |
| TTTGTCAACTATAGCCTAGT+GGG | - | chr7_3:13449454-13449473 | Msa1093500:intron | 35.0% | |
| AAATGTGAATTCTACCCACT+AGG | + | chr7_3:13449471-13449490 | None:intergenic | 35.0% | |
| GTGAGTTTAACTCAGTTAGT+AGG | - | chr7_3:13449565-13449584 | Msa1093500:intron | 35.0% | |
| CATAAAATATGCAAGGTTCG+AGG | - | chr7_3:13449595-13449614 | Msa1093500:intron | 35.0% | |
| AATACATTTCATTGCCAACG+AGG | - | chr7_3:13449646-13449665 | Msa1093500:intron | 35.0% | |
| AGCAAAGTGTGATATTTGCA+GGG | + | chr7_3:13449708-13449727 | None:intergenic | 35.0% | |
| AAGCAAAGTGTGATATTTGC+AGG | + | chr7_3:13449709-13449728 | None:intergenic | 35.0% | |
| TATATATATCTGTTGGGGAC+GGG | + | chr7_3:13450230-13450249 | None:intergenic | 35.0% | |
| GTATATATATCTGTTGGGGA+CGG | + | chr7_3:13450231-13450250 | None:intergenic | 35.0% | |
| !! | GGTTTGTTGAATTTCAGAGA+TGG | - | chr7_3:13450306-13450325 | Msa1093500:CDS | 35.0% |
| !!! | CTTCTTGATGCCATTTTTGT+GGG | + | chr7_3:13450374-13450393 | None:intergenic | 35.0% |
| ATGATGAATACATACCCCTT+TGG | + | chr7_3:13450422-13450441 | None:intergenic | 35.0% | |
| ! | AGATGGATCCAAAGTTTTTG+AGG | - | chr7_3:13450523-13450542 | Msa1093500:intron | 35.0% |
| ! | CGGAAGCATAACAAGAAAAA+TGG | - | chr7_3:13450561-13450580 | Msa1093500:intron | 35.0% |
| !! | GTAAAGTGTCGATCTCTAAT+CGG | - | chr7_3:13450602-13450621 | Msa1093500:intron | 35.0% |
| !! | TAAAGTGTCGATCTCTAATC+GGG | - | chr7_3:13450603-13450622 | Msa1093500:intron | 35.0% |
| TATGTTCGACAGTACTTTGA+TGG | - | chr7_3:13450685-13450704 | Msa1093500:intron | 35.0% | |
| ! | TGCAGTACTGTTAGCATTTT+TGG | - | chr7_3:13450728-13450747 | Msa1093500:CDS | 35.0% |
| ! | GCAGTACTGTTAGCATTTTT+GGG | - | chr7_3:13450729-13450748 | Msa1093500:CDS | 35.0% |
| !!! | CAAGCATTTTTTGACTGACA+TGG | + | chr7_3:13448713-13448732 | None:intergenic | 35.0% |
| CAAAAAATGCTTGAAAGTGG+AGG | - | chr7_3:13448720-13448739 | Msa1093500:CDS | 35.0% | |
| CTCTTAATCTGCTGTTAAGT+TGG | + | chr7_3:13448788-13448807 | None:intergenic | 35.0% | |
| ! | ATTTGAGATGTTTGCAAGCA+CGG | - | chr7_3:13448832-13448851 | Msa1093500:intron | 35.0% |
| AAAAAAACAGCGAGCATACA+TGG | - | chr7_3:13448929-13448948 | Msa1093500:intron | 35.0% | |
| TTACTTTGATATACGCGATC+TGG | + | chr7_3:13449141-13449160 | None:intergenic | 35.0% | |
| !! | TTTTCTAGCAAGATCTGGAT+TGG | + | chr7_3:13449171-13449190 | None:intergenic | 35.0% |
| GTTCTGCGGTTTCAAAATTT+GGG | + | chr7_3:13449194-13449213 | None:intergenic | 35.0% | |
| !!! | GCGAGGGTTTATTTTTTACA+AGG | - | chr7_3:13449334-13449353 | Msa1093500:intron | 35.0% |
| ! | TTTTGTCAACTATAGCCTAG+TGG | - | chr7_3:13449453-13449472 | Msa1093500:intron | 35.0% |
| TTTGTCAACTATAGCCTAGT+GGG | - | chr7_3:13449454-13449473 | Msa1093500:intron | 35.0% | |
| AAATGTGAATTCTACCCACT+AGG | + | chr7_3:13449471-13449490 | None:intergenic | 35.0% | |
| GTGAGTTTAACTCAGTTAGT+AGG | - | chr7_3:13449565-13449584 | Msa1093500:intron | 35.0% | |
| CATAAAATATGCAAGGTTCG+AGG | - | chr7_3:13449595-13449614 | Msa1093500:intron | 35.0% | |
| AATACATTTCATTGCCAACG+AGG | - | chr7_3:13449646-13449665 | Msa1093500:intron | 35.0% | |
| AGCAAAGTGTGATATTTGCA+GGG | + | chr7_3:13449708-13449727 | None:intergenic | 35.0% | |
| AAGCAAAGTGTGATATTTGC+AGG | + | chr7_3:13449709-13449728 | None:intergenic | 35.0% | |
| TATATATATCTGTTGGGGAC+GGG | + | chr7_3:13450230-13450249 | None:intergenic | 35.0% | |
| GTATATATATCTGTTGGGGA+CGG | + | chr7_3:13450231-13450250 | None:intergenic | 35.0% | |
| !! | GGTTTGTTGAATTTCAGAGA+TGG | - | chr7_3:13450306-13450325 | Msa1093500:CDS | 35.0% |
| !!! | CTTCTTGATGCCATTTTTGT+GGG | + | chr7_3:13450374-13450393 | None:intergenic | 35.0% |
| ATGATGAATACATACCCCTT+TGG | + | chr7_3:13450422-13450441 | None:intergenic | 35.0% | |
| ! | AGATGGATCCAAAGTTTTTG+AGG | - | chr7_3:13450523-13450542 | Msa1093500:intron | 35.0% |
| ! | CGGAAGCATAACAAGAAAAA+TGG | - | chr7_3:13450561-13450580 | Msa1093500:intron | 35.0% |
| !! | GTAAAGTGTCGATCTCTAAT+CGG | - | chr7_3:13450602-13450621 | Msa1093500:intron | 35.0% |
| !! | TAAAGTGTCGATCTCTAATC+GGG | - | chr7_3:13450603-13450622 | Msa1093500:intron | 35.0% |
| TATGTTCGACAGTACTTTGA+TGG | - | chr7_3:13450685-13450704 | Msa1093500:intron | 35.0% | |
| ! | TGCAGTACTGTTAGCATTTT+TGG | - | chr7_3:13450728-13450747 | Msa1093500:CDS | 35.0% |
| ! | GCAGTACTGTTAGCATTTTT+GGG | - | chr7_3:13450729-13450748 | Msa1093500:CDS | 35.0% |
| !! | TAAACTTGTTAGCGTGTTGG+CGG | + | chr7_3:13448890-13448909 | None:intergenic | 40.0% |
| !! | GAGTAAACTTGTTAGCGTGT+TGG | + | chr7_3:13448893-13448912 | None:intergenic | 40.0% |
| !!! | GTTTTTTTGCAGTGGGTTGT+TGG | + | chr7_3:13448917-13448936 | None:intergenic | 40.0% |
| TAATCCTTCGTTGCCTTTCT+GGG | + | chr7_3:13449094-13449113 | None:intergenic | 40.0% | |
| ATAATCCTTCGTTGCCTTTC+TGG | + | chr7_3:13449095-13449114 | None:intergenic | 40.0% | |
| !! | TTGGGTTTTCTAGCAAGATC+TGG | + | chr7_3:13449176-13449195 | None:intergenic | 40.0% |
| GGTTCTGCGGTTTCAAAATT+TGG | + | chr7_3:13449195-13449214 | None:intergenic | 40.0% | |
| AGGGTTGAAAACGGAAGATT+TGG | - | chr7_3:13449290-13449309 | Msa1093500:CDS | 40.0% | |
| AACGGAAGATTTGGATTCGA+CGG | - | chr7_3:13449299-13449318 | Msa1093500:CDS | 40.0% | |
| CTAACTGAGTTAAACTCACG+AGG | + | chr7_3:13449564-13449583 | None:intergenic | 40.0% | |
| TTGCCAACGAGGTTATGTTT+AGG | - | chr7_3:13449657-13449676 | Msa1093500:intron | 40.0% | |
| TCTCCTAAACATAACCTCGT+TGG | + | chr7_3:13449663-13449682 | None:intergenic | 40.0% | |
| ! | CACTTTAGTTCGTACTTCGT+GGG | + | chr7_3:13449807-13449826 | None:intergenic | 40.0% |
| ! | TCACTTTAGTTCGTACTTCG+TGG | + | chr7_3:13449808-13449827 | None:intergenic | 40.0% |
| !!! | TCTCAACTAGTTTTGGTCCT+TGG | + | chr7_3:13449911-13449930 | None:intergenic | 40.0% |
| ! | ACCTAATTCTGAAGATGCAG+TGG | + | chr7_3:13450289-13450308 | None:intergenic | 40.0% |
| TCTTACAAGGCCCACAAAAA+TGG | - | chr7_3:13450361-13450380 | Msa1093500:CDS | 40.0% | |
| !!! | GCTTCTTGATGCCATTTTTG+TGG | + | chr7_3:13450375-13450394 | None:intergenic | 40.0% |
| ATGAATACATACCCCTTTGG+TGG | + | chr7_3:13450419-13450438 | None:intergenic | 40.0% | |
| ! | CTCTGGTTCCTCAAAAACTT+TGG | + | chr7_3:13450534-13450553 | None:intergenic | 40.0% |
| !! | CAAAGTTTTTGAGGAACCAG+AGG | - | chr7_3:13450532-13450551 | Msa1093500:intron | 40.0% |
| CACACAATCGAAAATGAGTG+TGG | + | chr7_3:13450878-13450897 | None:intergenic | 40.0% | |
| !! | TAAACTTGTTAGCGTGTTGG+CGG | + | chr7_3:13448890-13448909 | None:intergenic | 40.0% |
| !! | GAGTAAACTTGTTAGCGTGT+TGG | + | chr7_3:13448893-13448912 | None:intergenic | 40.0% |
| !!! | GTTTTTTTGCAGTGGGTTGT+TGG | + | chr7_3:13448917-13448936 | None:intergenic | 40.0% |
| TAATCCTTCGTTGCCTTTCT+GGG | + | chr7_3:13449094-13449113 | None:intergenic | 40.0% | |
| ATAATCCTTCGTTGCCTTTC+TGG | + | chr7_3:13449095-13449114 | None:intergenic | 40.0% | |
| !! | TTGGGTTTTCTAGCAAGATC+TGG | + | chr7_3:13449176-13449195 | None:intergenic | 40.0% |
| GGTTCTGCGGTTTCAAAATT+TGG | + | chr7_3:13449195-13449214 | None:intergenic | 40.0% | |
| AGGGTTGAAAACGGAAGATT+TGG | - | chr7_3:13449290-13449309 | Msa1093500:CDS | 40.0% | |
| AACGGAAGATTTGGATTCGA+CGG | - | chr7_3:13449299-13449318 | Msa1093500:CDS | 40.0% | |
| CTAACTGAGTTAAACTCACG+AGG | + | chr7_3:13449564-13449583 | None:intergenic | 40.0% | |
| TTGCCAACGAGGTTATGTTT+AGG | - | chr7_3:13449657-13449676 | Msa1093500:intron | 40.0% | |
| TCTCCTAAACATAACCTCGT+TGG | + | chr7_3:13449663-13449682 | None:intergenic | 40.0% | |
| ! | CACTTTAGTTCGTACTTCGT+GGG | + | chr7_3:13449807-13449826 | None:intergenic | 40.0% |
| ! | TCACTTTAGTTCGTACTTCG+TGG | + | chr7_3:13449808-13449827 | None:intergenic | 40.0% |
| !!! | TCTCAACTAGTTTTGGTCCT+TGG | + | chr7_3:13449911-13449930 | None:intergenic | 40.0% |
| ! | ACCTAATTCTGAAGATGCAG+TGG | + | chr7_3:13450289-13450308 | None:intergenic | 40.0% |
| TCTTACAAGGCCCACAAAAA+TGG | - | chr7_3:13450361-13450380 | Msa1093500:CDS | 40.0% | |
| !!! | GCTTCTTGATGCCATTTTTG+TGG | + | chr7_3:13450375-13450394 | None:intergenic | 40.0% |
| ATGAATACATACCCCTTTGG+TGG | + | chr7_3:13450419-13450438 | None:intergenic | 40.0% | |
| ! | CTCTGGTTCCTCAAAAACTT+TGG | + | chr7_3:13450534-13450553 | None:intergenic | 40.0% |
| !! | CAAAGTTTTTGAGGAACCAG+AGG | - | chr7_3:13450532-13450551 | Msa1093500:intron | 40.0% |
| CACACAATCGAAAATGAGTG+TGG | + | chr7_3:13450878-13450897 | None:intergenic | 40.0% | |
| !!! | TTCGCTTTTTACCGTGTTGG+CGG | + | chr7_3:13448755-13448774 | None:intergenic | 45.0% |
| !!! | GGATTCGCTTTTTACCGTGT+TGG | + | chr7_3:13448758-13448777 | None:intergenic | 45.0% |
| ATGTTTGCAAGCACGGAACT+TGG | - | chr7_3:13448839-13448858 | Msa1093500:intron | 45.0% | |
| ! | AGCACGGAACTTGGATTTTG+AGG | - | chr7_3:13448848-13448867 | Msa1093500:intron | 45.0% |
| ! | GCACGGAACTTGGATTTTGA+GGG | - | chr7_3:13448849-13448868 | Msa1093500:intron | 45.0% |
| !!! | GCTCGCTGTTTTTTTGCAGT+GGG | + | chr7_3:13448924-13448943 | None:intergenic | 45.0% |
| !!! | TGCTCGCTGTTTTTTTGCAG+TGG | + | chr7_3:13448925-13448944 | None:intergenic | 45.0% |
| !! | CGTCTTGGTTGGTTTCTCAA+CGG | + | chr7_3:13449014-13449033 | None:intergenic | 45.0% |
| TGTGTAGTCATCGTCTTGGT+TGG | + | chr7_3:13449025-13449044 | None:intergenic | 45.0% | |
| TCGATGTGTAGTCATCGTCT+TGG | + | chr7_3:13449029-13449048 | None:intergenic | 45.0% | |
| !! | CAGATCGTTTTGTTCGGTGA+CGG | + | chr7_3:13449226-13449245 | None:intergenic | 45.0% |
| TCTGTTATAACGAACCACGG+CGG | + | chr7_3:13449250-13449269 | None:intergenic | 45.0% | |
| GGCTCTGTTATAACGAACCA+CGG | + | chr7_3:13449253-13449272 | None:intergenic | 45.0% | |
| ACGGAAGATTTGGATTCGAC+GGG | - | chr7_3:13449300-13449319 | Msa1093500:CDS | 45.0% | |
| AAGATTTGGATTCGACGGGA+TGG | - | chr7_3:13449304-13449323 | Msa1093500:CDS | 45.0% | |
| ! | ATGTGAATAAGCGGGGTGTT+CGG | - | chr7_3:13449495-13449514 | Msa1093500:intron | 45.0% |
| TGTTACTACCATCCAAAGCG+AGG | - | chr7_3:13450187-13450206 | Msa1093500:intron | 45.0% | |
| GTTACTACCATCCAAAGCGA+GGG | - | chr7_3:13450188-13450207 | Msa1093500:intron | 45.0% | |
| !!! | AGTGGCTCTAGGGTTTTGTT+CGG | + | chr7_3:13450271-13450290 | None:intergenic | 45.0% |
| GCCACTGCATCTTCAGAATT+AGG | - | chr7_3:13450285-13450304 | Msa1093500:CDS | 45.0% | |
| ! | CTTGTAAGACTGGTTGTGAG+CGG | + | chr7_3:13450350-13450369 | None:intergenic | 45.0% |
| !! | TTTTGTGGGCCTTGTAAGAC+TGG | + | chr7_3:13450360-13450379 | None:intergenic | 45.0% |
| ATGGCATCAAGAAGCCAAAG+AGG | - | chr7_3:13450380-13450399 | Msa1093500:CDS | 45.0% | |
| TTGATGCTGAAAGTGAGCTG+TGG | - | chr7_3:13450837-13450856 | Msa1093500:CDS | 45.0% | |
| TGATGCTGAAAGTGAGCTGT+GGG | - | chr7_3:13450838-13450857 | Msa1093500:CDS | 45.0% | |
| !!! | TTCGCTTTTTACCGTGTTGG+CGG | + | chr7_3:13448755-13448774 | None:intergenic | 45.0% |
| !!! | GGATTCGCTTTTTACCGTGT+TGG | + | chr7_3:13448758-13448777 | None:intergenic | 45.0% |
| ATGTTTGCAAGCACGGAACT+TGG | - | chr7_3:13448839-13448858 | Msa1093500:intron | 45.0% | |
| ! | AGCACGGAACTTGGATTTTG+AGG | - | chr7_3:13448848-13448867 | Msa1093500:intron | 45.0% |
| ! | GCACGGAACTTGGATTTTGA+GGG | - | chr7_3:13448849-13448868 | Msa1093500:intron | 45.0% |
| !!! | GCTCGCTGTTTTTTTGCAGT+GGG | + | chr7_3:13448924-13448943 | None:intergenic | 45.0% |
| !!! | TGCTCGCTGTTTTTTTGCAG+TGG | + | chr7_3:13448925-13448944 | None:intergenic | 45.0% |
| !! | CGTCTTGGTTGGTTTCTCAA+CGG | + | chr7_3:13449014-13449033 | None:intergenic | 45.0% |
| TGTGTAGTCATCGTCTTGGT+TGG | + | chr7_3:13449025-13449044 | None:intergenic | 45.0% | |
| TCGATGTGTAGTCATCGTCT+TGG | + | chr7_3:13449029-13449048 | None:intergenic | 45.0% | |
| !! | CAGATCGTTTTGTTCGGTGA+CGG | + | chr7_3:13449226-13449245 | None:intergenic | 45.0% |
| TCTGTTATAACGAACCACGG+CGG | + | chr7_3:13449250-13449269 | None:intergenic | 45.0% | |
| GGCTCTGTTATAACGAACCA+CGG | + | chr7_3:13449253-13449272 | None:intergenic | 45.0% | |
| ACGGAAGATTTGGATTCGAC+GGG | - | chr7_3:13449300-13449319 | Msa1093500:CDS | 45.0% | |
| AAGATTTGGATTCGACGGGA+TGG | - | chr7_3:13449304-13449323 | Msa1093500:CDS | 45.0% | |
| ! | ATGTGAATAAGCGGGGTGTT+CGG | - | chr7_3:13449495-13449514 | Msa1093500:intron | 45.0% |
| TGTTACTACCATCCAAAGCG+AGG | - | chr7_3:13450187-13450206 | Msa1093500:intron | 45.0% | |
| GTTACTACCATCCAAAGCGA+GGG | - | chr7_3:13450188-13450207 | Msa1093500:intron | 45.0% | |
| !!! | AGTGGCTCTAGGGTTTTGTT+CGG | + | chr7_3:13450271-13450290 | None:intergenic | 45.0% |
| GCCACTGCATCTTCAGAATT+AGG | - | chr7_3:13450285-13450304 | Msa1093500:CDS | 45.0% | |
| ! | CTTGTAAGACTGGTTGTGAG+CGG | + | chr7_3:13450350-13450369 | None:intergenic | 45.0% |
| !! | TTTTGTGGGCCTTGTAAGAC+TGG | + | chr7_3:13450360-13450379 | None:intergenic | 45.0% |
| ATGGCATCAAGAAGCCAAAG+AGG | - | chr7_3:13450380-13450399 | Msa1093500:CDS | 45.0% | |
| TTGATGCTGAAAGTGAGCTG+TGG | - | chr7_3:13450837-13450856 | Msa1093500:CDS | 45.0% | |
| TGATGCTGAAAGTGAGCTGT+GGG | - | chr7_3:13450838-13450857 | Msa1093500:CDS | 45.0% | |
| !!! | TATATATGTTTATTTTTTAT+AGG | - | chr7_3:13449361-13449380 | Msa1093500:intron | 5.0% |
| !! | AATTATCAAAATATAATAAA+TGG | + | chr7_3:13449989-13450008 | None:intergenic | 5.0% |
| !!! | TATATATGTTTATTTTTTAT+AGG | - | chr7_3:13449361-13449380 | Msa1093500:intron | 5.0% |
| !! | AATTATCAAAATATAATAAA+TGG | + | chr7_3:13449989-13450008 | None:intergenic | 5.0% |
| !! | TGCTGTTAAGTTGGTTCGCG+TGG | + | chr7_3:13448779-13448798 | None:intergenic | 50.0% |
| !! | CGGAACTTGGATTTTGAGGG+TGG | - | chr7_3:13448852-13448871 | Msa1093500:intron | 50.0% |
| !! | CTTGGATTTTGAGGGTGGTG+AGG | - | chr7_3:13448857-13448876 | Msa1093500:intron | 50.0% |
| ACCAGTCAAACGACCCAGAA+AGG | - | chr7_3:13449078-13449097 | Msa1093500:intron | 50.0% | |
| !! | GGCGGTCAGATCGTTTTGTT+CGG | + | chr7_3:13449232-13449251 | None:intergenic | 50.0% |
| ATTTGGATTCGACGGGATGG+AGG | - | chr7_3:13449307-13449326 | Msa1093500:CDS | 50.0% | |
| TTTGGATTCGACGGGATGGA+GGG | - | chr7_3:13449308-13449327 | Msa1093500:CDS | 50.0% | |
| ! | TGTGAATAAGCGGGGTGTTC+GGG | - | chr7_3:13449496-13449515 | Msa1093500:intron | 50.0% |
| ! | ACTTACACCCTCGCTTTGGA+TGG | + | chr7_3:13450198-13450217 | None:intergenic | 50.0% |
| ! | CTGAAGATGCAGTGGCTCTA+GGG | + | chr7_3:13450281-13450300 | None:intergenic | 50.0% |
| TCTGAAGATGCAGTGGCTCT+AGG | + | chr7_3:13450282-13450301 | None:intergenic | 50.0% | |
| CGCTCACAACCAGTCTTACA+AGG | - | chr7_3:13450348-13450367 | Msa1093500:CDS | 50.0% | |
| ATACCCCTTTGGTGGAAGTG+TGG | + | chr7_3:13450411-13450430 | None:intergenic | 50.0% | |
| !! | TGCTGTTAAGTTGGTTCGCG+TGG | + | chr7_3:13448779-13448798 | None:intergenic | 50.0% |
| !! | CGGAACTTGGATTTTGAGGG+TGG | - | chr7_3:13448852-13448871 | Msa1093500:intron | 50.0% |
| !! | CTTGGATTTTGAGGGTGGTG+AGG | - | chr7_3:13448857-13448876 | Msa1093500:intron | 50.0% |
| ACCAGTCAAACGACCCAGAA+AGG | - | chr7_3:13449078-13449097 | Msa1093500:intron | 50.0% | |
| !! | GGCGGTCAGATCGTTTTGTT+CGG | + | chr7_3:13449232-13449251 | None:intergenic | 50.0% |
| ATTTGGATTCGACGGGATGG+AGG | - | chr7_3:13449307-13449326 | Msa1093500:CDS | 50.0% | |
| TTTGGATTCGACGGGATGGA+GGG | - | chr7_3:13449308-13449327 | Msa1093500:CDS | 50.0% | |
| ! | TGTGAATAAGCGGGGTGTTC+GGG | - | chr7_3:13449496-13449515 | Msa1093500:intron | 50.0% |
| ! | ACTTACACCCTCGCTTTGGA+TGG | + | chr7_3:13450198-13450217 | None:intergenic | 50.0% |
| ! | CTGAAGATGCAGTGGCTCTA+GGG | + | chr7_3:13450281-13450300 | None:intergenic | 50.0% |
| TCTGAAGATGCAGTGGCTCT+AGG | + | chr7_3:13450282-13450301 | None:intergenic | 50.0% | |
| CGCTCACAACCAGTCTTACA+AGG | - | chr7_3:13450348-13450367 | Msa1093500:CDS | 50.0% | |
| ATACCCCTTTGGTGGAAGTG+TGG | + | chr7_3:13450411-13450430 | None:intergenic | 50.0% | |
| ! | TTGTTAGCGTGTTGGCGGTC+AGG | + | chr7_3:13448885-13448904 | None:intergenic | 55.0% |
| AGCCTAACAGTCCAGTGCCT+CGG | - | chr7_3:13448960-13448979 | Msa1093500:intron | 55.0% | |
| !! | ATCCGAGGCACTGGACTGTT+AGG | + | chr7_3:13448965-13448984 | None:intergenic | 55.0% |
| GTCCAGTGCCTCGGATAAGA+CGG | - | chr7_3:13448969-13448988 | Msa1093500:intron | 55.0% | |
| TGCCTCGGATAAGACGGTGA+CGG | - | chr7_3:13448975-13448994 | Msa1093500:intron | 55.0% | |
| GCCTTTCTGGGTCGTTTGAC+TGG | + | chr7_3:13449082-13449101 | None:intergenic | 55.0% | |
| ACGACCCAGAAAGGCAACGA+AGG | - | chr7_3:13449087-13449106 | Msa1093500:intron | 55.0% | |
| !! | ATACGCGATCTGGCTCTTCG+CGG | + | chr7_3:13449131-13449150 | None:intergenic | 55.0% |
| ACAAAACGATCTGACCGCCG+TGG | - | chr7_3:13449233-13449252 | Msa1093500:CDS | 55.0% | |
| ATAACAGAGCCACCCTTCGC+CGG | - | chr7_3:13449262-13449281 | Msa1093500:CDS | 55.0% | |
| TTGGATTCGACGGGATGGAG+GGG | - | chr7_3:13449309-13449328 | Msa1093500:CDS | 55.0% | |
| ! | GTGAATAAGCGGGGTGTTCG+GGG | - | chr7_3:13449497-13449516 | Msa1093500:intron | 55.0% |
| CTGCACTTACACCCTCGCTT+TGG | + | chr7_3:13450202-13450221 | None:intergenic | 55.0% | |
| !!! | GGCTCTAGGGTTTTGTTCGG+CGG | + | chr7_3:13450268-13450287 | None:intergenic | 55.0% |
| ACCGCCACACTTCCACCAAA+GGG | - | chr7_3:13450404-13450423 | Msa1093500:CDS | 55.0% | |
| ! | TGAGGAACCAGAGGTACGCA+CGG | - | chr7_3:13450541-13450560 | Msa1093500:intron | 55.0% |
| TATGCTTCCGTGCGTACCTC+TGG | + | chr7_3:13450551-13450570 | None:intergenic | 55.0% | |
| ! | TTGTTAGCGTGTTGGCGGTC+AGG | + | chr7_3:13448885-13448904 | None:intergenic | 55.0% |
| AGCCTAACAGTCCAGTGCCT+CGG | - | chr7_3:13448960-13448979 | Msa1093500:intron | 55.0% | |
| !! | ATCCGAGGCACTGGACTGTT+AGG | + | chr7_3:13448965-13448984 | None:intergenic | 55.0% |
| GTCCAGTGCCTCGGATAAGA+CGG | - | chr7_3:13448969-13448988 | Msa1093500:intron | 55.0% | |
| TGCCTCGGATAAGACGGTGA+CGG | - | chr7_3:13448975-13448994 | Msa1093500:intron | 55.0% | |
| GCCTTTCTGGGTCGTTTGAC+TGG | + | chr7_3:13449082-13449101 | None:intergenic | 55.0% | |
| ACGACCCAGAAAGGCAACGA+AGG | - | chr7_3:13449087-13449106 | Msa1093500:intron | 55.0% | |
| !! | ATACGCGATCTGGCTCTTCG+CGG | + | chr7_3:13449131-13449150 | None:intergenic | 55.0% |
| ACAAAACGATCTGACCGCCG+TGG | - | chr7_3:13449233-13449252 | Msa1093500:CDS | 55.0% | |
| ATAACAGAGCCACCCTTCGC+CGG | - | chr7_3:13449262-13449281 | Msa1093500:CDS | 55.0% | |
| TTGGATTCGACGGGATGGAG+GGG | - | chr7_3:13449309-13449328 | Msa1093500:CDS | 55.0% | |
| ! | GTGAATAAGCGGGGTGTTCG+GGG | - | chr7_3:13449497-13449516 | Msa1093500:intron | 55.0% |
| CTGCACTTACACCCTCGCTT+TGG | + | chr7_3:13450202-13450221 | None:intergenic | 55.0% | |
| !!! | GGCTCTAGGGTTTTGTTCGG+CGG | + | chr7_3:13450268-13450287 | None:intergenic | 55.0% |
| ACCGCCACACTTCCACCAAA+GGG | - | chr7_3:13450404-13450423 | Msa1093500:CDS | 55.0% | |
| ! | TGAGGAACCAGAGGTACGCA+CGG | - | chr7_3:13450541-13450560 | Msa1093500:intron | 55.0% |
| TATGCTTCCGTGCGTACCTC+TGG | + | chr7_3:13450551-13450570 | None:intergenic | 55.0% | |
| GGTGAGTTCGACCGCCAACA+CGG | - | chr7_3:13448741-13448760 | Msa1093500:CDS | 60.0% | |
| CACCGTCTTATCCGAGGCAC+TGG | + | chr7_3:13448974-13448993 | None:intergenic | 60.0% | |
| CACCGTCACCGTCTTATCCG+AGG | + | chr7_3:13448980-13448999 | None:intergenic | 60.0% | |
| ! | CTCGGATAAGACGGTGACGG+TGG | - | chr7_3:13448978-13448997 | Msa1093500:intron | 60.0% |
| ! | GGATAAGACGGTGACGGTGG+TGG | - | chr7_3:13448981-13449000 | Msa1093500:intron | 60.0% |
| ! | CTGGCTCTTCGCGGATCTGT+GGG | + | chr7_3:13449122-13449141 | None:intergenic | 60.0% |
| !! | TCTGGCTCTTCGCGGATCTG+TGG | + | chr7_3:13449123-13449142 | None:intergenic | 60.0% |
| GACGGTTCGTCGAGGTTCTG+CGG | + | chr7_3:13449208-13449227 | None:intergenic | 60.0% | |
| ! | TGTTCGGTGACGGTTCGTCG+AGG | + | chr7_3:13449216-13449235 | None:intergenic | 60.0% |
| ! | CCGTTTTCAACCCTTGCCGC+CGG | + | chr7_3:13449284-13449303 | None:intergenic | 60.0% |
| CCGGCGGCAAGGGTTGAAAA+CGG | - | chr7_3:13449281-13449300 | Msa1093500:CDS | 60.0% | |
| GAAGTGTGGCGGTGCCTCTT+TGG | + | chr7_3:13450397-13450416 | None:intergenic | 60.0% | |
| CACCGCCACACTTCCACCAA+AGG | - | chr7_3:13450403-13450422 | Msa1093500:CDS | 60.0% | |
| ! | CCCCTTTGGTGGAAGTGTGG+CGG | + | chr7_3:13450408-13450427 | None:intergenic | 60.0% |
| CCGCCACACTTCCACCAAAG+GGG | - | chr7_3:13450405-13450424 | Msa1093500:CDS | 60.0% | |
| GGTGAGTTCGACCGCCAACA+CGG | - | chr7_3:13448741-13448760 | Msa1093500:CDS | 60.0% | |
| CACCGTCTTATCCGAGGCAC+TGG | + | chr7_3:13448974-13448993 | None:intergenic | 60.0% | |
| CACCGTCACCGTCTTATCCG+AGG | + | chr7_3:13448980-13448999 | None:intergenic | 60.0% | |
| ! | CTCGGATAAGACGGTGACGG+TGG | - | chr7_3:13448978-13448997 | Msa1093500:intron | 60.0% |
| ! | GGATAAGACGGTGACGGTGG+TGG | - | chr7_3:13448981-13449000 | Msa1093500:intron | 60.0% |
| ! | CTGGCTCTTCGCGGATCTGT+GGG | + | chr7_3:13449122-13449141 | None:intergenic | 60.0% |
| !! | TCTGGCTCTTCGCGGATCTG+TGG | + | chr7_3:13449123-13449142 | None:intergenic | 60.0% |
| GACGGTTCGTCGAGGTTCTG+CGG | + | chr7_3:13449208-13449227 | None:intergenic | 60.0% | |
| ! | TGTTCGGTGACGGTTCGTCG+AGG | + | chr7_3:13449216-13449235 | None:intergenic | 60.0% |
| ! | CCGTTTTCAACCCTTGCCGC+CGG | + | chr7_3:13449284-13449303 | None:intergenic | 60.0% |
| CCGGCGGCAAGGGTTGAAAA+CGG | - | chr7_3:13449281-13449300 | Msa1093500:CDS | 60.0% | |
| GAAGTGTGGCGGTGCCTCTT+TGG | + | chr7_3:13450397-13450416 | None:intergenic | 60.0% | |
| CACCGCCACACTTCCACCAA+AGG | - | chr7_3:13450403-13450422 | Msa1093500:CDS | 60.0% | |
| ! | CCCCTTTGGTGGAAGTGTGG+CGG | + | chr7_3:13450408-13450427 | None:intergenic | 60.0% |
| CCGCCACACTTCCACCAAAG+GGG | - | chr7_3:13450405-13450424 | Msa1093500:CDS | 60.0% | |
| GATTCGACGGGATGGAGGGG+CGG | - | chr7_3:13449312-13449331 | Msa1093500:CDS | 65.0% | |
| GATTCGACGGGATGGAGGGG+CGG | - | chr7_3:13449312-13449331 | Msa1093500:CDS | 65.0% | |
| ACAGAGCCACCCTTCGCCGG+CGG | - | chr7_3:13449265-13449284 | Msa1093500:CDS | 70.0% | |
| CAACCCTTGCCGCCGGCGAA+GGG | + | chr7_3:13449277-13449296 | None:intergenic | 70.0% | |
| TCAACCCTTGCCGCCGGCGA+AGG | + | chr7_3:13449278-13449297 | None:intergenic | 70.0% | |
| ACAGAGCCACCCTTCGCCGG+CGG | - | chr7_3:13449265-13449284 | Msa1093500:CDS | 70.0% | |
| CAACCCTTGCCGCCGGCGAA+GGG | + | chr7_3:13449277-13449296 | None:intergenic | 70.0% | |
| TCAACCCTTGCCGCCGGCGA+AGG | + | chr7_3:13449278-13449297 | None:intergenic | 70.0% | |
| CCACCCTTCGCCGGCGGCAA+GGG | - | chr7_3:13449271-13449290 | Msa1093500:CDS | 75.0% | |
| ACGGGATGGAGGGGCGGCGA+GGG | - | chr7_3:13449318-13449337 | Msa1093500:CDS | 75.0% | |
| CCACCCTTCGCCGGCGGCAA+GGG | - | chr7_3:13449271-13449290 | Msa1093500:CDS | 75.0% | |
| ACGGGATGGAGGGGCGGCGA+GGG | - | chr7_3:13449318-13449337 | Msa1093500:CDS | 75.0% | |
| ! | GCCACCCTTCGCCGGCGGCA+AGG | - | chr7_3:13449270-13449289 | Msa1093500:CDS | 80.0% |
| ! | CCCTTGCCGCCGGCGAAGGG+TGG | + | chr7_3:13449274-13449293 | None:intergenic | 80.0% |
| ! | GACGGGATGGAGGGGCGGCG+AGG | - | chr7_3:13449317-13449336 | Msa1093500:CDS | 80.0% |
| ! | GCCACCCTTCGCCGGCGGCA+AGG | - | chr7_3:13449270-13449289 | Msa1093500:CDS | 80.0% |
| ! | CCCTTGCCGCCGGCGAAGGG+TGG | + | chr7_3:13449274-13449293 | None:intergenic | 80.0% |
| ! | GACGGGATGGAGGGGCGGCG+AGG | - | chr7_3:13449317-13449336 | Msa1093500:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 13448705 | 13450898 | 13448705 | ID=Msa1093500;Name=Msa1093500 |
| chr7_3 | mRNA | 13448705 | 13450898 | 13448705 | ID=Msa1093500-mRNA-1;Parent=Msa1093500;Name=Msa1093500-mRNA-1;_AED=0.73;_eAED=0.73;_QI=0|0.25|0|0.6|1|1|5|0|223 |
| chr7_3 | exon | 13450725 | 13450898 | 13450725 | ID=Msa1093500-mRNA-1:exon:3209;Parent=Msa1093500-mRNA-1 |
| chr7_3 | exon | 13450264 | 13450477 | 13450264 | ID=Msa1093500-mRNA-1:exon:3208;Parent=Msa1093500-mRNA-1 |
| chr7_3 | exon | 13449177 | 13449344 | 13449177 | ID=Msa1093500-mRNA-1:exon:3207;Parent=Msa1093500-mRNA-1 |
| chr7_3 | exon | 13449050 | 13449078 | 13449050 | ID=Msa1093500-mRNA-1:exon:3206;Parent=Msa1093500-mRNA-1 |
| chr7_3 | exon | 13448705 | 13448791 | 13448705 | ID=Msa1093500-mRNA-1:exon:3205;Parent=Msa1093500-mRNA-1 |
| chr7_3 | CDS | 13450725 | 13450898 | 13450725 | ID=Msa1093500-mRNA-1:cds;Parent=Msa1093500-mRNA-1 |
| chr7_3 | CDS | 13450264 | 13450477 | 13450264 | ID=Msa1093500-mRNA-1:cds;Parent=Msa1093500-mRNA-1 |
| chr7_3 | CDS | 13449177 | 13449344 | 13449177 | ID=Msa1093500-mRNA-1:cds;Parent=Msa1093500-mRNA-1 |
| chr7_3 | CDS | 13449050 | 13449078 | 13449050 | ID=Msa1093500-mRNA-1:cds;Parent=Msa1093500-mRNA-1 |
| chr7_3 | CDS | 13448705 | 13448791 | 13448705 | ID=Msa1093500-mRNA-1:cds;Parent=Msa1093500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
