Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880780 | XP_003609737.1 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 6.05e-122 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880780 | sp|A0A221J5X6|ISY2_NEPRA | 40.351 | 171 | 101 | 1 | 2 | 172 | 223 | 392 | 9.86e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880780 | G7JMR9 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 2.89e-122 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa0880780 | 0.801684 | 8.018084e-49 | -8.615850e-47 |
| Msa0001450 | Msa0880780 | 0.818596 | 1.805066e-52 | -8.615850e-47 |
| Msa0003700 | Msa0880780 | 0.811285 | 7.555583e-51 | -8.615850e-47 |
| Msa0007480 | Msa0880780 | 0.815399 | 9.432935e-52 | -8.615850e-47 |
| Msa0017510 | Msa0880780 | 0.834627 | 2.687518e-56 | -8.615850e-47 |
| Msa0026130 | Msa0880780 | 0.824536 | 7.655604e-54 | -8.615850e-47 |
| Msa0027230 | Msa0880780 | 0.817846 | 2.668289e-52 | -8.615850e-47 |
| Msa0027260 | Msa0880780 | 0.800993 | 1.110598e-48 | -8.615850e-47 |
| Msa0028420 | Msa0880780 | 0.819208 | 1.310515e-52 | -8.615850e-47 |
| Msa0040240 | Msa0880780 | 0.802274 | 6.064899e-49 | -8.615850e-47 |
| Msa0042610 | Msa0880780 | 0.826878 | 2.129612e-54 | -8.615850e-47 |
| Msa0069330 | Msa0880780 | 0.810714 | 1.004628e-50 | -8.615850e-47 |
| Msa0075220 | Msa0880780 | 0.813435 | 2.563325e-51 | -8.615850e-47 |
| Msa0089630 | Msa0880780 | 0.800286 | 1.547652e-48 | -8.615850e-47 |
| Msa0104550 | Msa0880780 | 0.816538 | 5.251174e-52 | -8.615850e-47 |
| Msa0110970 | Msa0880780 | 0.809753 | 1.618823e-50 | -8.615850e-47 |
| Msa0116340 | Msa0880780 | 0.807830 | 4.171988e-50 | -8.615850e-47 |
| Msa0602870 | Msa0880780 | 0.802467 | 5.534626e-49 | -8.615850e-47 |
| Msa0615710 | Msa0880780 | 0.836747 | 7.804208e-57 | -8.615850e-47 |
| Msa0669520 | Msa0880780 | 0.816905 | 4.346477e-52 | -8.615850e-47 |
| Msa0683570 | Msa0880780 | 0.805228 | 1.477350e-49 | -8.615850e-47 |
| Msa0710800 | Msa0880780 | 0.802820 | 4.679117e-49 | -8.615850e-47 |
| Msa0738040 | Msa0880780 | 0.812590 | 3.926872e-51 | -8.615850e-47 |
| Msa0765910 | Msa0880780 | 0.808366 | 3.208783e-50 | -8.615850e-47 |
| Msa0769180 | Msa0880780 | 0.800528 | 1.381477e-48 | -8.615850e-47 |
| Msa0770720 | Msa0880780 | 0.805109 | 1.564377e-49 | -8.615850e-47 |
| Msa0785210 | Msa0880780 | 0.815693 | 8.113713e-52 | -8.615850e-47 |
| Msa0826130 | Msa0880780 | 0.800132 | 1.663140e-48 | -8.615850e-47 |
| Msa0122970 | Msa0880780 | 0.808696 | 2.728154e-50 | -8.615850e-47 |
| Msa0124060 | Msa0880780 | 0.820866 | 5.469448e-53 | -8.615850e-47 |
| Msa0140820 | Msa0880780 | 0.808789 | 2.606040e-50 | -8.615850e-47 |
| Msa0157290 | Msa0880780 | 0.835140 | 1.995847e-56 | -8.615850e-47 |
| Msa0166590 | Msa0880780 | 0.817350 | 3.450637e-52 | -8.615850e-47 |
| Msa0168500 | Msa0880780 | 0.832803 | 7.672756e-56 | -8.615850e-47 |
| Msa0185490 | Msa0880780 | 0.800691 | 1.280046e-48 | -8.615850e-47 |
| Msa0197420 | Msa0880780 | 0.817551 | 3.109776e-52 | -8.615850e-47 |
| Msa0211150 | Msa0880780 | 0.801150 | 1.031139e-48 | -8.615850e-47 |
| Msa0223080 | Msa0880780 | 0.825648 | 4.180511e-54 | -8.615850e-47 |
| Msa0229230 | Msa0880780 | 0.830121 | 3.510392e-55 | -8.615850e-47 |
| Msa0369450 | Msa0880780 | 0.813444 | 2.551374e-51 | -8.615850e-47 |
| Msa0392420 | Msa0880780 | 0.825970 | 3.505303e-54 | -8.615850e-47 |
| Msa0392460 | Msa0880780 | 0.822307 | 2.541216e-53 | -8.615850e-47 |
| Msa0392490 | Msa0880780 | 0.833501 | 5.144125e-56 | -8.615850e-47 |
| Msa0395820 | Msa0880780 | 0.816614 | 5.049414e-52 | -8.615850e-47 |
| Msa0405710 | Msa0880780 | 0.815832 | 7.554812e-52 | -8.615850e-47 |
| Msa0461630 | Msa0880780 | 0.810257 | 1.261304e-50 | -8.615850e-47 |
| Msa0475790 | Msa0880780 | 0.805928 | 1.053446e-49 | -8.615850e-47 |
| Msa0482340 | Msa0880780 | 0.801855 | 7.395019e-49 | -8.615850e-47 |
| Msa0239190 | Msa0880780 | 0.814753 | 1.312037e-51 | -8.615850e-47 |
| Msa0239570 | Msa0880780 | 0.802993 | 4.309558e-49 | -8.615850e-47 |
| Msa0255090 | Msa0880780 | 0.817633 | 2.979817e-52 | -8.615850e-47 |
| Msa0259380 | Msa0880780 | 0.806734 | 7.122217e-50 | -8.615850e-47 |
| Msa0264150 | Msa0880780 | 0.807056 | 6.091506e-50 | -8.615850e-47 |
| Msa0277180 | Msa0880780 | 0.811774 | 5.916738e-51 | -8.615850e-47 |
| Msa0292330 | Msa0880780 | 0.801737 | 7.819760e-49 | -8.615850e-47 |
| Msa0292400 | Msa0880780 | 0.813774 | 2.158748e-51 | -8.615850e-47 |
| Msa0300690 | Msa0880780 | 0.802463 | 5.544957e-49 | -8.615850e-47 |
| Msa0302160 | Msa0880780 | 0.824734 | 6.872829e-54 | -8.615850e-47 |
| Msa0302170 | Msa0880780 | 0.811319 | 7.429418e-51 | -8.615850e-47 |
| Msa0316810 | Msa0880780 | 0.813028 | 3.148882e-51 | -8.615850e-47 |
| Msa0339490 | Msa0880780 | 0.825087 | 5.674056e-54 | -8.615850e-47 |
| Msa0339500 | Msa0880780 | 0.833647 | 4.730651e-56 | -8.615850e-47 |
| Msa0344570 | Msa0880780 | 0.819115 | 1.375847e-52 | -8.615850e-47 |
| Msa0487570 | Msa0880780 | 0.826385 | 2.793046e-54 | -8.615850e-47 |
| Msa0487630 | Msa0880780 | 0.844057 | 9.569355e-59 | -8.615850e-47 |
| Msa0524500 | Msa0880780 | 0.828040 | 1.121169e-54 | -8.615850e-47 |
| Msa0526420 | Msa0880780 | 0.831703 | 1.436234e-55 | -8.615850e-47 |
| Msa0527550 | Msa0880780 | 0.816701 | 4.828968e-52 | -8.615850e-47 |
| Msa0588360 | Msa0880780 | 0.803375 | 3.591712e-49 | -8.615850e-47 |
| Msa0597790 | Msa0880780 | 0.813305 | 2.738032e-51 | -8.615850e-47 |
| Msa0844560 | Msa0880780 | 0.811850 | 5.696101e-51 | -8.615850e-47 |
| Msa0869780 | Msa0880780 | 0.805291 | 1.432720e-49 | -8.615850e-47 |
| Msa0880140 | Msa0880780 | 0.830005 | 3.745948e-55 | -8.615850e-47 |
| Msa0880780 | Msa0936340 | 0.825920 | 3.602327e-54 | -8.615850e-47 |
| Msa0880780 | Msa0944760 | 0.807900 | 4.031578e-50 | -8.615850e-47 |
| Msa0880780 | Msa0945110 | 0.811902 | 5.549786e-51 | -8.615850e-47 |
| Msa0880780 | Msa0969200 | 0.803202 | 3.900347e-49 | -8.615850e-47 |
| Msa0880780 | Msa1004600 | 0.800550 | 1.367288e-48 | -8.615850e-47 |
| Msa0880780 | Msa1005870 | 0.836657 | 8.228998e-57 | -8.615850e-47 |
| Msa0880780 | Msa1019430 | 0.839464 | 1.560391e-57 | -8.615850e-47 |
| Msa0880780 | Msa1019470 | 0.842822 | 2.044828e-58 | -8.615850e-47 |
| Msa0880780 | Msa1045140 | 0.806216 | 9.160065e-50 | -8.615850e-47 |
| Msa0880780 | Msa1051830 | 0.819740 | 9.907713e-53 | -8.615850e-47 |
| Msa0880780 | Msa1066490 | 0.807394 | 5.164755e-50 | -8.615850e-47 |
| Msa0880780 | Msa1078170 | 0.836116 | 1.129566e-56 | -8.615850e-47 |
| Msa0880780 | Msa1085930 | 0.801472 | 8.861645e-49 | -8.615850e-47 |
| Msa0880780 | Msa1092010 | 0.829649 | 4.573101e-55 | -8.615850e-47 |
| Msa0880780 | Msa1093530 | 0.802369 | 5.796714e-49 | -8.615850e-47 |
| Msa0880780 | Msa1093840 | 0.804244 | 2.370336e-49 | -8.615850e-47 |
| Msa0880780 | Msa1096970 | 0.806525 | 7.884369e-50 | -8.615850e-47 |
| Msa0880780 | Msa1106700 | 0.803803 | 2.927975e-49 | -8.615850e-47 |
| Msa0880780 | Msa1123380 | 0.824827 | 6.534942e-54 | -8.615850e-47 |
| Msa0880780 | Msa1124110 | 0.800736 | 1.253031e-48 | -8.615850e-47 |
| Msa0880780 | Msa1125000 | 0.800022 | 1.751116e-48 | -8.615850e-47 |
| Msa0880780 | Msa1135390 | 0.809633 | 1.718387e-50 | -8.615850e-47 |
| Msa0880780 | Msa1140210 | 0.817643 | 2.965025e-52 | -8.615850e-47 |
| Msa0880780 | Msa1189070 | 0.809487 | 1.847247e-50 | -8.615850e-47 |
| Msa0880780 | Msa1193290 | 0.803282 | 3.756147e-49 | -8.615850e-47 |
| Msa0880780 | Msa1196440 | 0.816910 | 4.333186e-52 | -8.615850e-47 |
| Msa0880780 | Msa1218550 | 0.996795 | 2.456888e-232 | -8.615850e-47 |
| Msa0880780 | Msa1221060 | 0.805735 | 1.156289e-49 | -8.615850e-47 |
| Msa0880780 | Msa1225700 | 0.802583 | 5.237885e-49 | -8.615850e-47 |
| Msa0880780 | Msa1251160 | 0.833615 | 4.816618e-56 | -8.615850e-47 |
| Msa0880780 | Msa1284550 | 0.808582 | 2.885823e-50 | -8.615850e-47 |
| Msa0880780 | Msa1303240 | 0.805676 | 1.189946e-49 | -8.615850e-47 |
| Msa0880780 | Msa1361400 | 0.801224 | 9.960108e-49 | -8.615850e-47 |
| Msa0880780 | Msa1373100 | 0.804267 | 2.345197e-49 | -8.615850e-47 |
| Msa0880780 | Msa1374550 | 0.844021 | 9.786072e-59 | -8.615850e-47 |
| Msa0880780 | Msa1422950 | 0.804035 | 2.620286e-49 | -8.615850e-47 |
| Msa0880780 | Msa1423460 | 0.804916 | 1.716903e-49 | -8.615850e-47 |
| Msa0880780 | Msa1436570 | 0.996088 | 2.914907e-223 | -8.615850e-47 |
| Msa0880780 | Msa1440880 | 0.822203 | 2.686060e-53 | -8.615850e-47 |
| Msa0880780 | Msa1446810 | 0.839296 | 1.725175e-57 | -8.615850e-47 |
| Msa0880780 | Msa1446820 | 0.821549 | 3.806575e-53 | -8.615850e-47 |
| Msa0880780 | Msa1451160 | 0.835147 | 1.987563e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880780 | MtrunA17_Chr4g0068141 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 5.57e-126 | 358 |
| Msa0880780 | MtrunA17_Chr4g0068121 | 77.714 | 175 | 39 | 0 | 1 | 175 | 201 | 375 | 7.76e-103 | 300 |
| Msa0880780 | MtrunA17_Chr4g0036961 | 78.409 | 176 | 38 | 0 | 1 | 176 | 201 | 376 | 2.46e-102 | 299 |
| Msa0880780 | MtrunA17_Chr3g0082001 | 40.805 | 174 | 87 | 3 | 7 | 172 | 225 | 390 | 3.39e-42 | 145 |
| Msa0880780 | MtrunA17_Chr3g0134551 | 40.805 | 174 | 87 | 3 | 7 | 172 | 225 | 390 | 3.69e-42 | 145 |
| Msa0880780 | MtrunA17_Chr1g0152791 | 39.766 | 171 | 102 | 1 | 2 | 172 | 38 | 207 | 9.88e-42 | 139 |
| Msa0880780 | MtrunA17_Chr3g0134561 | 40.116 | 172 | 101 | 2 | 2 | 172 | 220 | 390 | 7.38e-41 | 141 |
| Msa0880780 | MtrunA17_Chr3g0134571 | 39.759 | 166 | 99 | 1 | 7 | 172 | 214 | 378 | 9.10e-40 | 138 |
| Msa0880780 | MtrunA17_Chr1g0152811 | 39.181 | 171 | 103 | 1 | 2 | 172 | 256 | 425 | 2.22e-39 | 138 |
| Msa0880780 | MtrunA17_Chr1g0152831 | 41.212 | 165 | 96 | 1 | 2 | 166 | 254 | 417 | 7.31e-39 | 138 |
| Msa0880780 | MtrunA17_Chr3g0104611 | 35.429 | 175 | 107 | 3 | 3 | 172 | 204 | 377 | 5.89e-30 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0880780 | AT4G24220.1 | 35.673 | 171 | 109 | 1 | 2 | 172 | 219 | 388 | 3.16e-36 | 129 |
| Msa0880780 | AT4G24220.2 | 35.673 | 171 | 109 | 1 | 2 | 172 | 218 | 387 | 3.96e-36 | 129 |
| Msa0880780 | AT5G58750.2 | 32.571 | 175 | 114 | 3 | 3 | 173 | 204 | 378 | 1.58e-23 | 95.9 |
| Msa0880780 | AT5G58750.1 | 32.571 | 175 | 114 | 3 | 3 | 173 | 212 | 386 | 1.69e-23 | 95.9 |
Find 34 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTAATAGTGTGAAATTC+TGG | 0.190417 | 6_1:+27627283 | Msa0880780:CDS |
| CGTTTCGTTATCCAGGAAAT+AGG | 0.260788 | 6_1:+27626869 | Msa0880780:CDS |
| TGCGTGATAAGGGTGAGATT+TGG | 0.302571 | 6_1:+27627109 | Msa0880780:CDS |
| GCAATTAAACGCTTGGTTCT+TGG | 0.326986 | 6_1:-27626974 | None:intergenic |
| GCGTGATAAGGGTGAGATTT+GGG | 0.351508 | 6_1:+27627110 | Msa0880780:CDS |
| TGTAGTTCAATGTTCGTAGA+TGG | 0.355494 | 6_1:-27627337 | None:intergenic |
| TGCTGTTAAGTTTGTGGAGT+TGG | 0.382859 | 6_1:+27627053 | Msa0880780:CDS |
| TGGACTTCATAAGACCAAAT+TGG | 0.385145 | 6_1:+27627152 | Msa0880780:CDS |
| GATCAGATTGTGGAGGAGTA+TGG | 0.407176 | 6_1:+27627132 | Msa0880780:CDS |
| CAAGCGTTTAATTGCACAAA+TGG | 0.411281 | 6_1:+27626982 | Msa0880780:CDS |
| TGAAAAGGAAGAGTTTGATT+TGG | 0.422569 | 6_1:+27627077 | Msa0880780:CDS |
| TCCAAAGTGTACCTATTTCC+TGG | 0.427390 | 6_1:-27626880 | None:intergenic |
| GGATTACCGTTTCGTTATCC+AGG | 0.443194 | 6_1:+27626862 | Msa0880780:CDS |
| GTTTGTGGAGTTGGATGAAA+AGG | 0.451890 | 6_1:+27627062 | Msa0880780:CDS |
| GGTGCAGTTTATGCGTGATA+AGG | 0.456957 | 6_1:+27627098 | Msa0880780:CDS |
| GTGCAGTTTATGCGTGATAA+GGG | 0.465205 | 6_1:+27627099 | Msa0880780:CDS |
| TAATCCTACCTGGCGACATA+TGG | 0.474335 | 6_1:-27626845 | None:intergenic |
| CATTTGTGCAATTAAACGCT+TGG | 0.482702 | 6_1:-27626981 | None:intergenic |
| TCCAGGAAATAGGTACACTT+TGG | 0.499854 | 6_1:+27626879 | Msa0880780:CDS |
| GTTTAATAGTGTGAAATTCT+GGG | 0.501763 | 6_1:+27627284 | Msa0880780:CDS |
| TGAGATTTGGGATCAGATTG+TGG | 0.512590 | 6_1:+27627122 | Msa0880780:CDS |
| TGCTCGCAAAGCAGCATGTG+TGG | 0.516452 | 6_1:+27626932 | Msa0880780:CDS |
| CTATTTCCTGGATAACGAAA+CGG | 0.534217 | 6_1:-27626868 | None:intergenic |
| ATGCGCTGCCATATGTCGCC+AGG | 0.550376 | 6_1:+27626837 | Msa0880780:CDS |
| GGAGCATTTCTGCGATATGA+CGG | 0.555683 | 6_1:+27626900 | Msa0880780:CDS |
| GTAGTTCAATGTTCGTAGAT+GGG | 0.556971 | 6_1:-27627336 | None:intergenic |
| GTGGGCTGCAGTTACAAAGA+AGG | 0.580004 | 6_1:+27626951 | Msa0880780:CDS |
| CACATGGAAGAGTATGTGGA+AGG | 0.602569 | 6_1:+27627014 | Msa0880780:CDS |
| GCTCGCAAAGCAGCATGTGT+GGG | 0.604913 | 6_1:+27626933 | Msa0880780:CDS |
| AACGAAACGGTAATCCTACC+TGG | 0.609340 | 6_1:-27626855 | None:intergenic |
| AATTCTGGGTGATGAAGCTG+AGG | 0.665041 | 6_1:+27627298 | Msa0880780:CDS |
| GCTGCCATATGTCGCCAGGT+AGG | 0.675590 | 6_1:+27626841 | Msa0880780:CDS |
| GATTTGGGATCAGATTGTGG+AGG | 0.682099 | 6_1:+27627125 | Msa0880780:CDS |
| ATTCTGGGTGATGAAGCTGA+GGG | 0.787809 | 6_1:+27627299 | Msa0880780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTTTAATAGTGTGAAATTCT+GGG | + | chr6_1:27627284-27627303 | Msa0880780:CDS | 25.0% |
| TGAAAAGGAAGAGTTTGATT+TGG | + | chr6_1:27627077-27627096 | Msa0880780:CDS | 30.0% | |
| ! | ACAAGCAATTTTCTCCAATT+TGG | - | chr6_1:27627169-27627188 | None:intergenic | 30.0% |
| TGAAACTCAAATCGAAAAAC+TGG | - | chr6_1:27627207-27627226 | None:intergenic | 30.0% | |
| CGTTTAATAGTGTGAAATTC+TGG | + | chr6_1:27627283-27627302 | Msa0880780:CDS | 30.0% | |
| CTATTTCCTGGATAACGAAA+CGG | - | chr6_1:27626871-27626890 | None:intergenic | 35.0% | |
| CATTTGTGCAATTAAACGCT+TGG | - | chr6_1:27626984-27627003 | None:intergenic | 35.0% | |
| CAAGCGTTTAATTGCACAAA+TGG | + | chr6_1:27626982-27627001 | Msa0880780:CDS | 35.0% | |
| !! | TTTTCACATGGAAGAGTATG+TGG | + | chr6_1:27627010-27627029 | Msa0880780:CDS | 35.0% |
| !!! | GACTTTTGCTGTTAAGTTTG+TGG | + | chr6_1:27627047-27627066 | Msa0880780:CDS | 35.0% |
| TGGACTTCATAAGACCAAAT+TGG | + | chr6_1:27627152-27627171 | Msa0880780:CDS | 35.0% | |
| !!! | AATTGCTTGTTTTGAAGCCT+TGG | + | chr6_1:27627179-27627198 | Msa0880780:CDS | 35.0% |
| CGTTTCGTTATCCAGGAAAT+AGG | + | chr6_1:27626869-27626888 | Msa0880780:CDS | 40.0% | |
| TCCAGGAAATAGGTACACTT+TGG | + | chr6_1:27626879-27626898 | Msa0880780:CDS | 40.0% | |
| TCCAAAGTGTACCTATTTCC+TGG | - | chr6_1:27626883-27626902 | None:intergenic | 40.0% | |
| ! | GCAATTAAACGCTTGGTTCT+TGG | - | chr6_1:27626977-27626996 | None:intergenic | 40.0% |
| !! | CAAATGGTGACGTTTTCACA+TGG | + | chr6_1:27626998-27627017 | Msa0880780:CDS | 40.0% |
| TGCTGTTAAGTTTGTGGAGT+TGG | + | chr6_1:27627053-27627072 | Msa0880780:CDS | 40.0% | |
| GTTTGTGGAGTTGGATGAAA+AGG | + | chr6_1:27627062-27627081 | Msa0880780:CDS | 40.0% | |
| GTGCAGTTTATGCGTGATAA+GGG | + | chr6_1:27627099-27627118 | Msa0880780:CDS | 40.0% | |
| ! | TGAGATTTGGGATCAGATTG+TGG | + | chr6_1:27627122-27627141 | Msa0880780:CDS | 40.0% |
| AAATCGAAAAACTGGCACCA+AGG | - | chr6_1:27627199-27627218 | None:intergenic | 40.0% | |
| TAATCCTACCTGGCGACATA+TGG | - | chr6_1:27626848-27626867 | None:intergenic | 45.0% | |
| AACGAAACGGTAATCCTACC+TGG | - | chr6_1:27626858-27626877 | None:intergenic | 45.0% | |
| GGATTACCGTTTCGTTATCC+AGG | + | chr6_1:27626862-27626881 | Msa0880780:CDS | 45.0% | |
| ! | GGAGCATTTCTGCGATATGA+CGG | + | chr6_1:27626900-27626919 | Msa0880780:CDS | 45.0% |
| ! | CACATGGAAGAGTATGTGGA+AGG | + | chr6_1:27627014-27627033 | Msa0880780:CDS | 45.0% |
| GGTGCAGTTTATGCGTGATA+AGG | + | chr6_1:27627098-27627117 | Msa0880780:CDS | 45.0% | |
| TGCGTGATAAGGGTGAGATT+TGG | + | chr6_1:27627109-27627128 | Msa0880780:CDS | 45.0% | |
| GCGTGATAAGGGTGAGATTT+GGG | + | chr6_1:27627110-27627129 | Msa0880780:CDS | 45.0% | |
| ! | GATTTGGGATCAGATTGTGG+AGG | + | chr6_1:27627125-27627144 | Msa0880780:CDS | 45.0% |
| GATCAGATTGTGGAGGAGTA+TGG | + | chr6_1:27627132-27627151 | Msa0880780:CDS | 45.0% | |
| AATTCTGGGTGATGAAGCTG+AGG | + | chr6_1:27627298-27627317 | Msa0880780:CDS | 45.0% | |
| ATTCTGGGTGATGAAGCTGA+GGG | + | chr6_1:27627299-27627318 | Msa0880780:CDS | 45.0% | |
| ! | GTGGGCTGCAGTTACAAAGA+AGG | + | chr6_1:27626951-27626970 | Msa0880780:CDS | 50.0% |
| TGCTCGCAAAGCAGCATGTG+TGG | + | chr6_1:27626932-27626951 | Msa0880780:CDS | 55.0% | |
| GCTCGCAAAGCAGCATGTGT+GGG | + | chr6_1:27626933-27626952 | Msa0880780:CDS | 55.0% | |
| ATGCGCTGCCATATGTCGCC+AGG | + | chr6_1:27626837-27626856 | Msa0880780:CDS | 60.0% | |
| GCTGCCATATGTCGCCAGGT+AGG | + | chr6_1:27626841-27626860 | Msa0880780:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 27626823 | 27627353 | 27626823 | ID=Msa0880780;Name=Msa0880780 |
| chr6_1 | mRNA | 27626823 | 27627353 | 27626823 | ID=Msa0880780-mRNA-1;Parent=Msa0880780;Name=Msa0880780-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|176 |
| chr6_1 | exon | 27626823 | 27627353 | 27626823 | ID=Msa0880780-mRNA-1:exon:6803;Parent=Msa0880780-mRNA-1 |
| chr6_1 | CDS | 27626823 | 27627353 | 27626823 | ID=Msa0880780-mRNA-1:cds;Parent=Msa0880780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
