Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436570 | XP_003609737.1 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 6.05e-122 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436570 | sp|A0A221J5X6|ISY2_NEPRA | 40.351 | 171 | 101 | 1 | 2 | 172 | 223 | 392 | 9.86e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436570 | G7JMR9 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 2.89e-122 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa1436570 | 0.801048 | 1.082000e-48 | -8.615850e-47 |
| Msa0001450 | Msa1436570 | 0.826914 | 2.087894e-54 | -8.615850e-47 |
| Msa0003700 | Msa1436570 | 0.813097 | 3.041264e-51 | -8.615850e-47 |
| Msa0007480 | Msa1436570 | 0.815894 | 7.315008e-52 | -8.615850e-47 |
| Msa0017510 | Msa1436570 | 0.836599 | 8.514277e-57 | -8.615850e-47 |
| Msa0026130 | Msa1436570 | 0.832323 | 1.009477e-55 | -8.615850e-47 |
| Msa0027230 | Msa1436570 | 0.824054 | 9.937609e-54 | -8.615850e-47 |
| Msa0027260 | Msa1436570 | 0.809011 | 2.336500e-50 | -8.615850e-47 |
| Msa0028420 | Msa1436570 | 0.818633 | 1.770694e-52 | -8.615850e-47 |
| Msa0040240 | Msa1436570 | 0.804399 | 2.201023e-49 | -8.615850e-47 |
| Msa0042610 | Msa1436570 | 0.829458 | 5.090545e-55 | -8.615850e-47 |
| Msa0053780 | Msa1436570 | 0.800499 | 1.400290e-48 | -8.615850e-47 |
| Msa0069330 | Msa1436570 | 0.816694 | 4.844888e-52 | -8.615850e-47 |
| Msa0075220 | Msa1436570 | 0.819359 | 1.210529e-52 | -8.615850e-47 |
| Msa0089630 | Msa1436570 | 0.808975 | 2.377579e-50 | -8.615850e-47 |
| Msa0104550 | Msa1436570 | 0.822072 | 2.880481e-53 | -8.615850e-47 |
| Msa0110970 | Msa1436570 | 0.816580 | 5.139671e-52 | -8.615850e-47 |
| Msa0116340 | Msa1436570 | 0.811773 | 5.918614e-51 | -8.615850e-47 |
| Msa1361400 | Msa1436570 | 0.804922 | 1.711893e-49 | -8.615850e-47 |
| Msa1361410 | Msa1436570 | 0.803364 | 3.610565e-49 | -8.615850e-47 |
| Msa1373100 | Msa1436570 | 0.810025 | 1.414738e-50 | -8.615850e-47 |
| Msa1374550 | Msa1436570 | 0.848924 | 4.495769e-60 | -8.615850e-47 |
| Msa1421550 | Msa1436570 | 0.801248 | 9.846269e-49 | -8.615850e-47 |
| Msa1422950 | Msa1436570 | 0.809781 | 1.596570e-50 | -8.615850e-47 |
| Msa1423460 | Msa1436570 | 0.807791 | 4.254181e-50 | -8.615850e-47 |
| Msa1436570 | Msa1440880 | 0.823649 | 1.236057e-53 | -8.615850e-47 |
| Msa1436570 | Msa1446810 | 0.840236 | 9.816283e-58 | -8.615850e-47 |
| Msa1436570 | Msa1446820 | 0.824168 | 9.339593e-54 | -8.615850e-47 |
| Msa1436570 | Msa1451160 | 0.839346 | 1.674430e-57 | -8.615850e-47 |
| Msa0602870 | Msa1436570 | 0.809359 | 1.967922e-50 | -8.615850e-47 |
| Msa0608320 | Msa1436570 | 0.800052 | 1.726670e-48 | -8.615850e-47 |
| Msa0615710 | Msa1436570 | 0.842172 | 3.040721e-58 | -8.615850e-47 |
| Msa0643890 | Msa1436570 | 0.802789 | 4.747854e-49 | -8.615850e-47 |
| Msa0669520 | Msa1436570 | 0.819384 | 1.194974e-52 | -8.615850e-47 |
| Msa0683570 | Msa1436570 | 0.809950 | 1.468301e-50 | -8.615850e-47 |
| Msa0689230 | Msa1436570 | 0.807254 | 5.528657e-50 | -8.615850e-47 |
| Msa0710800 | Msa1436570 | 0.810019 | 1.419536e-50 | -8.615850e-47 |
| Msa0730430 | Msa1436570 | 0.800677 | 1.288220e-48 | -8.615850e-47 |
| Msa0738040 | Msa1436570 | 0.816059 | 6.721094e-52 | -8.615850e-47 |
| Msa0763070 | Msa1436570 | 0.803698 | 3.079089e-49 | -8.615850e-47 |
| Msa0765910 | Msa1436570 | 0.812138 | 4.928976e-51 | -8.615850e-47 |
| Msa0769180 | Msa1436570 | 0.803849 | 2.863893e-49 | -8.615850e-47 |
| Msa0770720 | Msa1436570 | 0.813154 | 2.954282e-51 | -8.615850e-47 |
| Msa0785210 | Msa1436570 | 0.824887 | 6.325698e-54 | -8.615850e-47 |
| Msa0818310 | Msa1436570 | 0.800046 | 1.731865e-48 | -8.615850e-47 |
| Msa0822870 | Msa1436570 | 0.800258 | 1.567744e-48 | -8.615850e-47 |
| Msa0826130 | Msa1436570 | 0.804263 | 2.348969e-49 | -8.615850e-47 |
| Msa0122970 | Msa1436570 | 0.815393 | 9.458114e-52 | -8.615850e-47 |
| Msa0124060 | Msa1436570 | 0.823450 | 1.376369e-53 | -8.615850e-47 |
| Msa0140820 | Msa1436570 | 0.814993 | 1.160876e-51 | -8.615850e-47 |
| Msa0157290 | Msa1436570 | 0.837146 | 6.172699e-57 | -8.615850e-47 |
| Msa0166590 | Msa1436570 | 0.825204 | 5.325541e-54 | -8.615850e-47 |
| Msa0168500 | Msa1436570 | 0.834833 | 2.384341e-56 | -8.615850e-47 |
| Msa0185490 | Msa1436570 | 0.803594 | 3.236003e-49 | -8.615850e-47 |
| Msa0197420 | Msa1436570 | 0.823806 | 1.136052e-53 | -8.615850e-47 |
| Msa0211150 | Msa1436570 | 0.805716 | 1.166909e-49 | -8.615850e-47 |
| Msa0223080 | Msa1436570 | 0.827076 | 1.909965e-54 | -8.615850e-47 |
| Msa0229230 | Msa1436570 | 0.834824 | 2.397159e-56 | -8.615850e-47 |
| Msa1225700 | Msa1436570 | 0.809407 | 1.921061e-50 | -8.615850e-47 |
| Msa1251160 | Msa1436570 | 0.835445 | 1.671407e-56 | -8.615850e-47 |
| Msa1284550 | Msa1436570 | 0.813084 | 3.061648e-51 | -8.615850e-47 |
| Msa1303240 | Msa1436570 | 0.809583 | 1.761368e-50 | -8.615850e-47 |
| Msa1303250 | Msa1436570 | 0.802667 | 5.032406e-49 | -8.615850e-47 |
| Msa0369450 | Msa1436570 | 0.820855 | 5.501457e-53 | -8.615850e-47 |
| Msa0380300 | Msa1436570 | 0.801145 | 1.033827e-48 | -8.615850e-47 |
| Msa0392420 | Msa1436570 | 0.828641 | 8.031802e-55 | -8.615850e-47 |
| Msa0392460 | Msa1436570 | 0.824950 | 6.114376e-54 | -8.615850e-47 |
| Msa0392490 | Msa1436570 | 0.835635 | 1.496095e-56 | -8.615850e-47 |
| Msa0395820 | Msa1436570 | 0.821893 | 3.168727e-53 | -8.615850e-47 |
| Msa0405570 | Msa1436570 | 0.800124 | 1.669420e-48 | -8.615850e-47 |
| Msa0405710 | Msa1436570 | 0.826721 | 2.322810e-54 | -8.615850e-47 |
| Msa0436490 | Msa1436570 | -0.805481 | 1.307147e-49 | -8.615850e-47 |
| Msa0461630 | Msa1436570 | 0.808117 | 3.626307e-50 | -8.615850e-47 |
| Msa0468330 | Msa1436570 | 0.801511 | 8.700305e-49 | -8.615850e-47 |
| Msa0475790 | Msa1436570 | 0.810218 | 1.285504e-50 | -8.615850e-47 |
| Msa0482340 | Msa1436570 | 0.801270 | 9.745328e-49 | -8.615850e-47 |
| Msa1004550 | Msa1436570 | 0.803820 | 2.904101e-49 | -8.615850e-47 |
| Msa1004600 | Msa1436570 | 0.806730 | 7.136592e-50 | -8.615850e-47 |
| Msa1005870 | Msa1436570 | 0.841797 | 3.821668e-58 | -8.615850e-47 |
| Msa1013400 | Msa1436570 | 0.806733 | 7.126639e-50 | -8.615850e-47 |
| Msa1019430 | Msa1436570 | 0.845497 | 3.914842e-59 | -8.615850e-47 |
| Msa1019470 | Msa1436570 | 0.846629 | 1.926751e-59 | -8.615850e-47 |
| Msa1020670 | Msa1436570 | 0.800333 | 1.514179e-48 | -8.615850e-47 |
| Msa1045140 | Msa1436570 | 0.811510 | 6.754653e-51 | -8.615850e-47 |
| Msa1047980 | Msa1436570 | 0.803660 | 3.136015e-49 | -8.615850e-47 |
| Msa1051830 | Msa1436570 | 0.826790 | 2.236156e-54 | -8.615850e-47 |
| Msa1066490 | Msa1436570 | 0.814795 | 1.284459e-51 | -8.615850e-47 |
| Msa1078170 | Msa1436570 | 0.840551 | 8.122987e-58 | -8.615850e-47 |
| Msa1085930 | Msa1436570 | 0.805290 | 1.433559e-49 | -8.615850e-47 |
| Msa1092010 | Msa1436570 | 0.834105 | 3.633565e-56 | -8.615850e-47 |
| Msa1093530 | Msa1436570 | 0.811692 | 6.163735e-51 | -8.615850e-47 |
| Msa1093840 | Msa1436570 | 0.811522 | 6.713712e-51 | -8.615850e-47 |
| Msa1096970 | Msa1436570 | 0.809685 | 1.674379e-50 | -8.615850e-47 |
| Msa1106700 | Msa1436570 | 0.811107 | 8.259566e-51 | -8.615850e-47 |
| Msa0239190 | Msa1436570 | 0.822206 | 2.680947e-53 | -8.615850e-47 |
| Msa0239570 | Msa1436570 | 0.808144 | 3.578231e-50 | -8.615850e-47 |
| Msa0255090 | Msa1436570 | 0.821442 | 4.029279e-53 | -8.615850e-47 |
| Msa0259380 | Msa1436570 | 0.811829 | 5.756597e-51 | -8.615850e-47 |
| Msa0264150 | Msa1436570 | 0.810708 | 1.007626e-50 | -8.615850e-47 |
| Msa0277180 | Msa1436570 | 0.817459 | 3.261737e-52 | -8.615850e-47 |
| Msa0292330 | Msa1436570 | 0.810529 | 1.101455e-50 | -8.615850e-47 |
| Msa0292400 | Msa1436570 | 0.817217 | 3.697465e-52 | -8.615850e-47 |
| Msa0300690 | Msa1436570 | 0.805731 | 1.158801e-49 | -8.615850e-47 |
| Msa0302160 | Msa1436570 | 0.827029 | 1.960600e-54 | -8.615850e-47 |
| Msa0302170 | Msa1436570 | 0.814930 | 1.198715e-51 | -8.615850e-47 |
| Msa0316810 | Msa1436570 | 0.817428 | 3.314970e-52 | -8.615850e-47 |
| Msa0317340 | Msa1436570 | 0.806622 | 7.523768e-50 | -8.615850e-47 |
| Msa0339490 | Msa1436570 | 0.827396 | 1.601261e-54 | -8.615850e-47 |
| Msa0339500 | Msa1436570 | 0.838019 | 3.686080e-57 | -8.615850e-47 |
| Msa0344570 | Msa1436570 | 0.820850 | 5.517002e-53 | -8.615850e-47 |
| Msa1123380 | Msa1436570 | 0.824797 | 6.645114e-54 | -8.615850e-47 |
| Msa1124110 | Msa1436570 | 0.807993 | 3.853010e-50 | -8.615850e-47 |
| Msa1125000 | Msa1436570 | 0.807182 | 5.726650e-50 | -8.615850e-47 |
| Msa1134110 | Msa1436570 | 0.804203 | 2.418093e-49 | -8.615850e-47 |
| Msa1135390 | Msa1436570 | 0.815868 | 7.414526e-52 | -8.615850e-47 |
| Msa1140210 | Msa1436570 | 0.821662 | 3.583235e-53 | -8.615850e-47 |
| Msa1189070 | Msa1436570 | 0.813411 | 2.594464e-51 | -8.615850e-47 |
| Msa1193290 | Msa1436570 | 0.806408 | 8.347320e-50 | -8.615850e-47 |
| Msa1196440 | Msa1436570 | 0.816619 | 5.038002e-52 | -8.615850e-47 |
| Msa1218550 | Msa1436570 | 0.997422 | 3.046126e-242 | -8.615850e-47 |
| Msa1221060 | Msa1436570 | 0.809267 | 2.058849e-50 | -8.615850e-47 |
| Msa0487570 | Msa1436570 | 0.829014 | 6.522259e-55 | -8.615850e-47 |
| Msa0487630 | Msa1436570 | 0.846250 | 2.444634e-59 | -8.615850e-47 |
| Msa0523270 | Msa1436570 | 0.802138 | 6.467160e-49 | -8.615850e-47 |
| Msa0524500 | Msa1436570 | 0.834128 | 3.584690e-56 | -8.615850e-47 |
| Msa0526420 | Msa1436570 | 0.837981 | 3.771434e-57 | -8.615850e-47 |
| Msa0527550 | Msa1436570 | 0.823577 | 1.285405e-53 | -8.615850e-47 |
| Msa0588140 | Msa1436570 | 0.801361 | 9.336823e-49 | -8.615850e-47 |
| Msa0588360 | Msa1436570 | 0.812703 | 3.710275e-51 | -8.615850e-47 |
| Msa0594660 | Msa1436570 | 0.803693 | 3.086090e-49 | -8.615850e-47 |
| Msa0597790 | Msa1436570 | 0.816383 | 5.687703e-52 | -8.615850e-47 |
| Msa0844560 | Msa1436570 | 0.812294 | 4.558695e-51 | -8.615850e-47 |
| Msa0861870 | Msa1436570 | 0.803101 | 4.094133e-49 | -8.615850e-47 |
| Msa0869780 | Msa1436570 | 0.811793 | 5.860926e-51 | -8.615850e-47 |
| Msa0876190 | Msa1436570 | 0.800895 | 1.162691e-48 | -8.615850e-47 |
| Msa0880140 | Msa1436570 | 0.832143 | 1.118272e-55 | -8.615850e-47 |
| Msa0880780 | Msa1436570 | 0.996088 | 2.914907e-223 | -8.615850e-47 |
| Msa0884410 | Msa1436570 | -0.805000 | 1.648694e-49 | -8.615850e-47 |
| Msa0902760 | Msa1436570 | 0.808112 | 3.634539e-50 | -8.615850e-47 |
| Msa0936340 | Msa1436570 | 0.828184 | 1.034936e-54 | -8.615850e-47 |
| Msa0944760 | Msa1436570 | 0.810746 | 9.889873e-51 | -8.615850e-47 |
| Msa0945110 | Msa1436570 | 0.814837 | 1.257376e-51 | -8.615850e-47 |
| Msa0969200 | Msa1436570 | 0.807247 | 5.549154e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436570 | MtrunA17_Chr4g0068141 | 95.455 | 176 | 8 | 0 | 1 | 176 | 201 | 376 | 5.57e-126 | 358 |
| Msa1436570 | MtrunA17_Chr4g0068121 | 77.714 | 175 | 39 | 0 | 1 | 175 | 201 | 375 | 7.76e-103 | 300 |
| Msa1436570 | MtrunA17_Chr4g0036961 | 78.409 | 176 | 38 | 0 | 1 | 176 | 201 | 376 | 2.46e-102 | 299 |
| Msa1436570 | MtrunA17_Chr3g0082001 | 40.805 | 174 | 87 | 3 | 7 | 172 | 225 | 390 | 3.39e-42 | 145 |
| Msa1436570 | MtrunA17_Chr3g0134551 | 40.805 | 174 | 87 | 3 | 7 | 172 | 225 | 390 | 3.69e-42 | 145 |
| Msa1436570 | MtrunA17_Chr1g0152791 | 39.766 | 171 | 102 | 1 | 2 | 172 | 38 | 207 | 9.88e-42 | 139 |
| Msa1436570 | MtrunA17_Chr3g0134561 | 40.116 | 172 | 101 | 2 | 2 | 172 | 220 | 390 | 7.38e-41 | 141 |
| Msa1436570 | MtrunA17_Chr3g0134571 | 39.759 | 166 | 99 | 1 | 7 | 172 | 214 | 378 | 9.10e-40 | 138 |
| Msa1436570 | MtrunA17_Chr1g0152811 | 39.181 | 171 | 103 | 1 | 2 | 172 | 256 | 425 | 2.22e-39 | 138 |
| Msa1436570 | MtrunA17_Chr1g0152831 | 41.212 | 165 | 96 | 1 | 2 | 166 | 254 | 417 | 7.31e-39 | 138 |
| Msa1436570 | MtrunA17_Chr3g0104611 | 35.429 | 175 | 107 | 3 | 3 | 172 | 204 | 377 | 5.89e-30 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436570 | AT4G24220.1 | 35.673 | 171 | 109 | 1 | 2 | 172 | 219 | 388 | 3.16e-36 | 129 |
| Msa1436570 | AT4G24220.2 | 35.673 | 171 | 109 | 1 | 2 | 172 | 218 | 387 | 3.96e-36 | 129 |
| Msa1436570 | AT5G58750.2 | 32.571 | 175 | 114 | 3 | 3 | 173 | 204 | 378 | 1.58e-23 | 95.9 |
| Msa1436570 | AT5G58750.1 | 32.571 | 175 | 114 | 3 | 3 | 173 | 212 | 386 | 1.69e-23 | 95.9 |
Find 34 sgRNAs with CRISPR-Local
Find 39 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTAATAGTGTGAAATTC+TGG | 0.190417 | tig0027944:+23168 | Msa1436570:CDS |
| CGTTTCGTTATCCAGGAAAT+AGG | 0.260788 | tig0027944:+22754 | Msa1436570:CDS |
| TGCGTGATAAGGGTGAGATT+TGG | 0.302571 | tig0027944:+22994 | Msa1436570:CDS |
| GCAATTAAACGCTTGGTTCT+TGG | 0.326986 | tig0027944:-22859 | None:intergenic |
| GCGTGATAAGGGTGAGATTT+GGG | 0.351508 | tig0027944:+22995 | Msa1436570:CDS |
| TGTAGTTCAATGTTCGTAGA+TGG | 0.355494 | tig0027944:-23222 | None:intergenic |
| TGCTGTTAAGTTTGTGGAGT+TGG | 0.382859 | tig0027944:+22938 | Msa1436570:CDS |
| TGGACTTCATAAGACCAAAT+TGG | 0.385145 | tig0027944:+23037 | Msa1436570:CDS |
| GATCAGATTGTGGAGGAGTA+TGG | 0.407176 | tig0027944:+23017 | Msa1436570:CDS |
| CAAGCGTTTAATTGCACAAA+TGG | 0.411281 | tig0027944:+22867 | Msa1436570:CDS |
| TGAAAAGGAAGAGTTTGATT+TGG | 0.422569 | tig0027944:+22962 | Msa1436570:CDS |
| TCCAAAGTGTACCTATTTCC+TGG | 0.427390 | tig0027944:-22765 | None:intergenic |
| GGATTACCGTTTCGTTATCC+AGG | 0.443194 | tig0027944:+22747 | Msa1436570:CDS |
| GTTTGTGGAGTTGGATGAAA+AGG | 0.451890 | tig0027944:+22947 | Msa1436570:CDS |
| GGTGCAGTTTATGCGTGATA+AGG | 0.456957 | tig0027944:+22983 | Msa1436570:CDS |
| GTGCAGTTTATGCGTGATAA+GGG | 0.465205 | tig0027944:+22984 | Msa1436570:CDS |
| TAATCCTACCTGGCGACATA+TGG | 0.474335 | tig0027944:-22730 | None:intergenic |
| CATTTGTGCAATTAAACGCT+TGG | 0.482702 | tig0027944:-22866 | None:intergenic |
| TCCAGGAAATAGGTACACTT+TGG | 0.499854 | tig0027944:+22764 | Msa1436570:CDS |
| GTTTAATAGTGTGAAATTCT+GGG | 0.501763 | tig0027944:+23169 | Msa1436570:CDS |
| TGAGATTTGGGATCAGATTG+TGG | 0.512590 | tig0027944:+23007 | Msa1436570:CDS |
| TGCTCGCAAAGCAGCATGTG+TGG | 0.516452 | tig0027944:+22817 | Msa1436570:CDS |
| CTATTTCCTGGATAACGAAA+CGG | 0.534217 | tig0027944:-22753 | None:intergenic |
| ATGCGCTGCCATATGTCGCC+AGG | 0.550376 | tig0027944:+22722 | Msa1436570:CDS |
| GGAGCATTTCTGCGATATGA+CGG | 0.555683 | tig0027944:+22785 | Msa1436570:CDS |
| GTAGTTCAATGTTCGTAGAT+GGG | 0.556971 | tig0027944:-23221 | None:intergenic |
| GTGGGCTGCAGTTACAAAGA+AGG | 0.580004 | tig0027944:+22836 | Msa1436570:CDS |
| CACATGGAAGAGTATGTGGA+AGG | 0.602569 | tig0027944:+22899 | Msa1436570:CDS |
| GCTCGCAAAGCAGCATGTGT+GGG | 0.604913 | tig0027944:+22818 | Msa1436570:CDS |
| AACGAAACGGTAATCCTACC+TGG | 0.609340 | tig0027944:-22740 | None:intergenic |
| AATTCTGGGTGATGAAGCTG+AGG | 0.665041 | tig0027944:+23183 | Msa1436570:CDS |
| GCTGCCATATGTCGCCAGGT+AGG | 0.675590 | tig0027944:+22726 | Msa1436570:CDS |
| GATTTGGGATCAGATTGTGG+AGG | 0.682099 | tig0027944:+23010 | Msa1436570:CDS |
| ATTCTGGGTGATGAAGCTGA+GGG | 0.787809 | tig0027944:+23184 | Msa1436570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GTTTAATAGTGTGAAATTCT+GGG | + | tig0027944:23169-23188 | Msa1436570:CDS | 25.0% |
| TGAAAAGGAAGAGTTTGATT+TGG | + | tig0027944:22962-22981 | Msa1436570:CDS | 30.0% | |
| ! | ACAAGCAATTTTCTCCAATT+TGG | - | tig0027944:23054-23073 | None:intergenic | 30.0% |
| TGAAACTCAAATCGAAAAAC+TGG | - | tig0027944:23092-23111 | None:intergenic | 30.0% | |
| CGTTTAATAGTGTGAAATTC+TGG | + | tig0027944:23168-23187 | Msa1436570:CDS | 30.0% | |
| CTATTTCCTGGATAACGAAA+CGG | - | tig0027944:22756-22775 | None:intergenic | 35.0% | |
| CATTTGTGCAATTAAACGCT+TGG | - | tig0027944:22869-22888 | None:intergenic | 35.0% | |
| CAAGCGTTTAATTGCACAAA+TGG | + | tig0027944:22867-22886 | Msa1436570:CDS | 35.0% | |
| !! | TTTTCACATGGAAGAGTATG+TGG | + | tig0027944:22895-22914 | Msa1436570:CDS | 35.0% |
| !!! | GACTTTTGCTGTTAAGTTTG+TGG | + | tig0027944:22932-22951 | Msa1436570:CDS | 35.0% |
| TGGACTTCATAAGACCAAAT+TGG | + | tig0027944:23037-23056 | Msa1436570:CDS | 35.0% | |
| !!! | AATTGCTTGTTTTGAAGCCT+TGG | + | tig0027944:23064-23083 | Msa1436570:CDS | 35.0% |
| CGTTTCGTTATCCAGGAAAT+AGG | + | tig0027944:22754-22773 | Msa1436570:CDS | 40.0% | |
| TCCAGGAAATAGGTACACTT+TGG | + | tig0027944:22764-22783 | Msa1436570:CDS | 40.0% | |
| TCCAAAGTGTACCTATTTCC+TGG | - | tig0027944:22768-22787 | None:intergenic | 40.0% | |
| ! | GCAATTAAACGCTTGGTTCT+TGG | - | tig0027944:22862-22881 | None:intergenic | 40.0% |
| !! | CAAATGGTGACGTTTTCACA+TGG | + | tig0027944:22883-22902 | Msa1436570:CDS | 40.0% |
| TGCTGTTAAGTTTGTGGAGT+TGG | + | tig0027944:22938-22957 | Msa1436570:CDS | 40.0% | |
| GTTTGTGGAGTTGGATGAAA+AGG | + | tig0027944:22947-22966 | Msa1436570:CDS | 40.0% | |
| GTGCAGTTTATGCGTGATAA+GGG | + | tig0027944:22984-23003 | Msa1436570:CDS | 40.0% | |
| ! | TGAGATTTGGGATCAGATTG+TGG | + | tig0027944:23007-23026 | Msa1436570:CDS | 40.0% |
| AAATCGAAAAACTGGCACCA+AGG | - | tig0027944:23084-23103 | None:intergenic | 40.0% | |
| TAATCCTACCTGGCGACATA+TGG | - | tig0027944:22733-22752 | None:intergenic | 45.0% | |
| AACGAAACGGTAATCCTACC+TGG | - | tig0027944:22743-22762 | None:intergenic | 45.0% | |
| GGATTACCGTTTCGTTATCC+AGG | + | tig0027944:22747-22766 | Msa1436570:CDS | 45.0% | |
| ! | GGAGCATTTCTGCGATATGA+CGG | + | tig0027944:22785-22804 | Msa1436570:CDS | 45.0% |
| ! | CACATGGAAGAGTATGTGGA+AGG | + | tig0027944:22899-22918 | Msa1436570:CDS | 45.0% |
| GGTGCAGTTTATGCGTGATA+AGG | + | tig0027944:22983-23002 | Msa1436570:CDS | 45.0% | |
| TGCGTGATAAGGGTGAGATT+TGG | + | tig0027944:22994-23013 | Msa1436570:CDS | 45.0% | |
| GCGTGATAAGGGTGAGATTT+GGG | + | tig0027944:22995-23014 | Msa1436570:CDS | 45.0% | |
| ! | GATTTGGGATCAGATTGTGG+AGG | + | tig0027944:23010-23029 | Msa1436570:CDS | 45.0% |
| GATCAGATTGTGGAGGAGTA+TGG | + | tig0027944:23017-23036 | Msa1436570:CDS | 45.0% | |
| AATTCTGGGTGATGAAGCTG+AGG | + | tig0027944:23183-23202 | Msa1436570:CDS | 45.0% | |
| ATTCTGGGTGATGAAGCTGA+GGG | + | tig0027944:23184-23203 | Msa1436570:CDS | 45.0% | |
| ! | GTGGGCTGCAGTTACAAAGA+AGG | + | tig0027944:22836-22855 | Msa1436570:CDS | 50.0% |
| TGCTCGCAAAGCAGCATGTG+TGG | + | tig0027944:22817-22836 | Msa1436570:CDS | 55.0% | |
| GCTCGCAAAGCAGCATGTGT+GGG | + | tig0027944:22818-22837 | Msa1436570:CDS | 55.0% | |
| ATGCGCTGCCATATGTCGCC+AGG | + | tig0027944:22722-22741 | Msa1436570:CDS | 60.0% | |
| GCTGCCATATGTCGCCAGGT+AGG | + | tig0027944:22726-22745 | Msa1436570:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027944 | gene | 22708 | 23238 | 22708 | ID=Msa1436570;Name=Msa1436570 |
| tig0027944 | mRNA | 22708 | 23238 | 22708 | ID=Msa1436570-mRNA-1;Parent=Msa1436570;Name=Msa1436570-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|-1|0|1|-1|1|1|0|176 |
| tig0027944 | exon | 22708 | 23238 | 22708 | ID=Msa1436570-mRNA-1:exon:10289;Parent=Msa1436570-mRNA-1 |
| tig0027944 | CDS | 22708 | 23238 | 22708 | ID=Msa1436570-mRNA-1:cds;Parent=Msa1436570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
