AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092790 MtrunA17_Chr1g0184901 100.000 134 0 0 1 134 1 134 8.52e-94 266
Msa0092790 MtrunA17_Chr1g0211651 91.473 129 11 0 6 134 3 131 4.51e-82 236
Msa0092790 MtrunA17_Chr1g0148961 86.567 134 18 0 1 134 1 134 8.01e-80 231
Msa0092790 MtrunA17_Chr1g0148951 86.567 134 18 0 1 134 1 134 8.01e-80 231
Msa0092790 MtrunA17_Chr4g0024701 73.881 134 15 1 1 134 1 114 8.12e-55 167
Msa0092790 MtrunA17_Chr2g0319191 64.545 110 37 2 24 132 14 122 8.07e-40 130
Msa0092790 MtrunA17_Chr2g0319181 64.545 110 37 2 24 132 14 122 9.64e-40 129
Msa0092790 MtrunA17_Chr7g0268831 59.016 122 47 3 11 130 6 126 2.14e-39 129
Msa0092790 MtrunA17_Chr7g0273351 59.664 119 45 3 14 130 6 123 1.14e-38 127
Msa0092790 MtrunA17_Chr7g0259151 55.118 127 50 3 10 130 1 126 4.17e-38 126
Msa0092790 MtrunA17_Chr7g0273331 59.664 119 45 3 14 130 62 179 9.34e-38 127
Msa0092790 MtrunA17_Chr7g0272611 55.752 113 48 2 19 130 19 130 4.70e-36 120
Msa0092790 MtrunA17_Chr4g0031041 60.550 109 41 2 23 130 15 122 9.62e-36 120
Msa0092790 MtrunA17_Chr2g0327951 60.550 109 41 2 23 130 56 163 1.27e-35 121
Msa0092790 MtrunA17_Chr4g0035621 62.500 104 37 2 28 130 26 128 6.80e-35 118
Msa0092790 MtrunA17_Chr4g0032301 60.952 105 39 2 27 130 25 128 1.02e-34 117
Msa0092790 MtrunA17_Chr4g0031001 61.538 104 38 2 28 130 26 128 1.22e-34 117
Msa0092790 MtrunA17_Chr4g0031651 60.952 105 39 2 27 130 25 128 1.29e-34 117
Msa0092790 MtrunA17_Chr2g0327931 60.952 105 39 2 27 130 24 127 1.42e-34 117
Msa0092790 MtrunA17_Chr8g0379311 58.716 109 43 2 27 134 25 132 2.01e-34 117
Msa0092790 MtrunA17_Chr7g0273341 52.101 119 43 5 14 130 45 151 2.33e-27 99.4
Msa0092790 MtrunA17_Chr4g0031031 62.687 67 24 1 55 120 17 83 1.30e-20 80.9
Msa0092790 MtrunA17_Chr6g0449661 45.283 106 47 4 27 130 86 182 7.69e-19 78.2
Msa0092790 MtrunA17_Chr3g0119971 44.340 106 48 4 27 130 81 177 2.52e-18 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092790 AT3G54560.1 91.912 136 9 1 1 134 1 136 5.25e-79 229
Msa0092790 AT3G54560.2 91.912 136 9 1 1 134 1 136 5.25e-79 229
Msa0092790 AT2G38810.1 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0092790 AT2G38810.4 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0092790 AT2G38810.3 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0092790 AT2G38810.2 89.706 136 12 1 1 134 1 136 8.53e-77 224
Msa0092790 AT1G52740.1 82.836 134 23 0 1 134 1 134 2.15e-71 210
Msa0092790 AT4G13570.1 78.022 91 20 0 34 124 28 118 3.31e-47 148
Msa0092790 AT4G13570.2 78.889 90 19 0 35 124 35 124 6.73e-47 148
Msa0092790 AT3G20670.1 64.545 110 37 2 24 132 14 122 6.60e-40 130
Msa0092790 AT4G27230.2 64.545 110 37 2 24 132 14 122 1.08e-39 130
Msa0092790 AT4G27230.1 64.545 110 37 2 24 132 14 122 1.08e-39 130
Msa0092790 AT5G54640.1 64.545 110 37 2 24 132 14 122 1.17e-39 130
Msa0092790 AT1G51060.1 63.889 108 37 2 24 130 14 120 4.32e-39 128
Msa0092790 AT5G02560.1 60.177 113 43 2 23 134 21 132 1.17e-38 128
Msa0092790 AT1G08880.1 59.829 117 44 3 14 128 9 124 1.62e-38 127
Msa0092790 AT1G54690.1 59.829 117 44 3 14 128 9 124 2.02e-38 127
Msa0092790 AT5G27670.1 60.177 113 43 2 19 130 18 129 9.53e-37 123
Msa0092790 AT5G59870.1 59.633 109 42 2 23 130 21 128 7.61e-35 118
Msa0092790 AT5G02560.2 49.635 137 43 3 23 134 21 156 2.98e-33 115

Find 54 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATTTGCAGCTTGCTATC+AGG 0.247896 1_2:-75561562 Msa0092790:CDS
AGCAACAGCTGCAGTGTATT+TGG 0.282329 1_2:-75561672 Msa0092790:CDS
TTCTTCTCGTGCTGGAATTC+AGG 0.284428 1_2:-75562736 Msa0092790:intron
AAAGCAAAGAAATCATTCTT+TGG 0.335830 1_2:+75561448 None:intergenic
GGTATTCTTATGTGGTCATT+TGG 0.337403 1_2:-75561297 Msa0092790:three_prime_UTR
TTGATATGGTAGTGTGTAAA+TGG 0.352891 1_2:-75561321 Msa0092790:three_prime_UTR
AGTGTATTTGGCATCCATTC+TGG 0.360664 1_2:-75561660 Msa0092790:CDS
CAGCAATTGTTCCCTTGATA+AGG 0.371937 1_2:+75561519 None:intergenic
CTTATCAAGGGAACAATTGC+TGG 0.372156 1_2:-75561518 Msa0092790:CDS
TCGAAAAGAAAATAATGAAT+GGG 0.416814 1_2:+75563047 None:intergenic
CTCCGACACGTCCATTAGCT+TGG 0.422586 1_2:+75561693 None:intergenic
TTCTTATGTGGTCATTTGGA+TGG 0.435634 1_2:-75561293 Msa0092790:three_prime_UTR
TTTATTATGACTAGAAATGA+TGG 0.437423 1_2:-75561380 Msa0092790:three_prime_UTR
AGCAATTGTTCCCTTGATAA+GGG 0.441041 1_2:+75561520 None:intergenic
AAGCAAAGAGTCCAAGCTAA+TGG 0.447447 1_2:-75561704 Msa0092790:CDS
ATCGAAAAGAAAATAATGAA+TGG 0.459577 1_2:+75563046 None:intergenic
TTAGATATTTGTGATGCTGT+TGG 0.467051 1_2:-75561255 Msa0092790:three_prime_UTR
ACTTCTCGTTCTTCTCGTGC+TGG 0.468244 1_2:-75562744 Msa0092790:CDS
AAATGCTAGCAAAGATTTGA+AGG 0.477120 1_2:-75561603 Msa0092790:CDS
GACTGCTGAAGTTCTTGAGC+TGG 0.480553 1_2:-75561630 Msa0092790:CDS
CTCTTTGCTTCAGCTGTCTG+TGG 0.485476 1_2:+75561717 None:intergenic
GCATTTGCAGCTTGCTATCA+GGG 0.487874 1_2:-75561561 Msa0092790:CDS
GCTGAAGTTCTTGAGCTGGC+TGG 0.490963 1_2:-75561626 Msa0092790:CDS
TCAGGTGATTAAGCAATGGC+AGG 0.495436 1_2:-75562837 Msa0092790:intron
ATGGCAGGAAAAGGAGGAAA+AGG 0.512104 1_2:-75562822 Msa0092790:CDS
GGAACTTGATACCCTTATCA+AGG 0.512125 1_2:-75561531 Msa0092790:CDS
GATTAAGCAATGGCAGGAAA+AGG 0.523608 1_2:-75562831 Msa0092790:exon
CTTGTCTTTGTTAGCCGCGG+TGG 0.527714 1_2:+75562782 None:intergenic
GAAATGATGGTGATCACAGT+AGG 0.529426 1_2:-75561367 Msa0092790:three_prime_UTR
GTCCTTGTCTTTGTTAGCCG+CGG 0.546728 1_2:+75562779 None:intergenic
GCAAAGATTTGAAGGTGAAG+AGG 0.563947 1_2:-75561595 Msa0092790:CDS
TGGTGGTTGTAGTTTCCTGT+GGG 0.573166 1_2:-75561746 Msa0092790:intron
ATGGTGGTTGTAGTTTCCTG+TGG 0.574055 1_2:-75561747 Msa0092790:intron
CGAAAAGAAAATAATGAATG+GGG 0.589244 1_2:+75563048 None:intergenic
GGTTGTAGTTTCCTGTGGGT+AGG 0.590033 1_2:-75561742 Msa0092790:intron
AGCAGTCAGATACTCCAGAA+TGG 0.591746 1_2:+75561646 None:intergenic
ATAGCAAGCTGCAAATGCCT+TGG 0.592261 1_2:+75561566 None:intergenic
GCTTGCTATCAGGGGAGATG+AGG 0.593400 1_2:-75561552 Msa0092790:CDS
GTCCAAGCTAATGGACGTGT+CGG 0.596665 1_2:-75561695 Msa0092790:CDS
TAAATGGTGGTATTCTTATG+TGG 0.602361 1_2:-75561305 Msa0092790:three_prime_UTR
TAAGCAATGGCAGGAAAAGG+AGG 0.606722 1_2:-75562828 Msa0092790:exon
AGCACGAGAAGAACGAGAAG+TGG 0.609010 1_2:+75562746 None:intergenic
CATTTGCAGCTTGCTATCAG+GGG 0.612353 1_2:-75561560 Msa0092790:CDS
AAATGATGGTGATCACAGTA+GGG 0.620882 1_2:-75561366 Msa0092790:three_prime_UTR
AAGGGAACAATTGCTGGTGG+TGG 0.621502 1_2:-75561512 Msa0092790:CDS
GAACTTGATACCCTTATCAA+GGG 0.630061 1_2:-75561530 Msa0092790:CDS
ATCAAGGACTTGTGGATGTG+AGG 0.631787 1_2:+75561482 None:intergenic
GCACGAGAAGAACGAGAAGT+GGG 0.642443 1_2:+75562747 None:intergenic
CACCGCGGCTAACAAAGACA+AGG 0.646788 1_2:-75562781 Msa0092790:CDS
TGTCTGTGGATCCTACCCAC+AGG 0.647982 1_2:+75561731 None:intergenic
ATCAAGGGAACAATTGCTGG+TGG 0.659902 1_2:-75561515 Msa0092790:CDS
ATATGGTAGTGTGTAAATGG+TGG 0.704651 1_2:-75561318 Msa0092790:three_prime_UTR
AGGTGAAGAGGATTACACCA+AGG 0.739394 1_2:-75561583 Msa0092790:CDS
CGTTGCAGCGAAAACCACCG+CGG 0.789660 1_2:-75562796 Msa0092790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTGTGTAAATTTTTT+AGG - chr1_2:75561686-75561705 Msa0092790:CDS 15.0%
!!! TTTTCTGTGTAAATTTTTTA+GGG - chr1_2:75561687-75561706 Msa0092790:CDS 15.0%
!!! TCTATGTTCTTTAATTTTTT+AGG - chr1_2:75561812-75561831 Msa0092790:intron 15.0%
!!! CTATGTTCTTTAATTTTTTA+GGG - chr1_2:75561813-75561832 Msa0092790:intron 15.0%
!!! ATAAGTTTAATTTCGATTTA+AGG - chr1_2:75562176-75562195 Msa0092790:intron 15.0%
!!! TTTTTCTGTGTAAATTTTTT+AGG - chr1_2:75561686-75561705 Msa0092790:CDS 15.0%
!!! TTTTCTGTGTAAATTTTTTA+GGG - chr1_2:75561687-75561706 Msa0092790:CDS 15.0%
!!! TCTATGTTCTTTAATTTTTT+AGG - chr1_2:75561812-75561831 Msa0092790:intron 15.0%
!!! CTATGTTCTTTAATTTTTTA+GGG - chr1_2:75561813-75561832 Msa0092790:intron 15.0%
!!! ATAAGTTTAATTTCGATTTA+AGG - chr1_2:75562176-75562195 Msa0092790:intron 15.0%
!! TCGAAAAGAAAATAATGAAT+GGG + chr1_2:75561212-75561231 None:intergenic 20.0%
!! ATCGAAAAGAAAATAATGAA+TGG + chr1_2:75561213-75561232 None:intergenic 20.0%
!!! TCGATTTTCTTTATTTTTCT+AGG - chr1_2:75561574-75561593 Msa0092790:CDS 20.0%
!!! CGATTTTCTTTATTTTTCTA+GGG - chr1_2:75561575-75561594 Msa0092790:CDS 20.0%
!!! TTCTTTAATTTTTTAGGGTT+AGG - chr1_2:75561818-75561837 Msa0092790:intron 20.0%
!!! TCTTTAATTTTTTAGGGTTA+GGG - chr1_2:75561819-75561838 Msa0092790:intron 20.0%
!! TGAGATTAAATTAATACCTT+TGG - chr1_2:75562371-75562390 Msa0092790:intron 20.0%
!! ATCTGTAAATGATAATTAAC+AGG + chr1_2:75562417-75562436 None:intergenic 20.0%
!! TAACAAAACAAAAATAACAG+AGG + chr1_2:75562456-75562475 None:intergenic 20.0%
!!! ATTAACTGTAAAATTTGCTA+TGG - chr1_2:75562490-75562509 Msa0092790:intron 20.0%
!! TTTATTATGACTAGAAATGA+TGG - chr1_2:75562876-75562895 Msa0092790:intron 20.0%
!!! GAATTTTGAATGAATTGATA+TGG - chr1_2:75562921-75562940 Msa0092790:intron 20.0%
!! TCGAAAAGAAAATAATGAAT+GGG + chr1_2:75561212-75561231 None:intergenic 20.0%
!! ATCGAAAAGAAAATAATGAA+TGG + chr1_2:75561213-75561232 None:intergenic 20.0%
!!! TCGATTTTCTTTATTTTTCT+AGG - chr1_2:75561574-75561593 Msa0092790:CDS 20.0%
!!! CGATTTTCTTTATTTTTCTA+GGG - chr1_2:75561575-75561594 Msa0092790:CDS 20.0%
!!! TTCTTTAATTTTTTAGGGTT+AGG - chr1_2:75561818-75561837 Msa0092790:intron 20.0%
!!! TCTTTAATTTTTTAGGGTTA+GGG - chr1_2:75561819-75561838 Msa0092790:intron 20.0%
!! TGAGATTAAATTAATACCTT+TGG - chr1_2:75562371-75562390 Msa0092790:intron 20.0%
!! ATCTGTAAATGATAATTAAC+AGG + chr1_2:75562417-75562436 None:intergenic 20.0%
!! TAACAAAACAAAAATAACAG+AGG + chr1_2:75562456-75562475 None:intergenic 20.0%
!!! ATTAACTGTAAAATTTGCTA+TGG - chr1_2:75562490-75562509 Msa0092790:intron 20.0%
!! TTTATTATGACTAGAAATGA+TGG - chr1_2:75562876-75562895 Msa0092790:intron 20.0%
!!! GAATTTTGAATGAATTGATA+TGG - chr1_2:75562921-75562940 Msa0092790:intron 20.0%
! CGAAAAGAAAATAATGAATG+GGG + chr1_2:75561211-75561230 None:intergenic 25.0%
! AAATCGAAAAAACGAAGAAA+GGG + chr1_2:75561561-75561580 None:intergenic 25.0%
! AAAATCGAAAAAACGAAGAA+AGG + chr1_2:75561562-75561581 None:intergenic 25.0%
!!! TTCTTTATTTTTCTAGGGTT+AGG - chr1_2:75561580-75561599 Msa0092790:CDS 25.0%
!!! TCTTTATTTTTCTAGGGTTA+GGG - chr1_2:75561581-75561600 Msa0092790:CDS 25.0%
!!! TGTGTAAATTTTTTAGGGTT+AGG - chr1_2:75561692-75561711 Msa0092790:CDS 25.0%
!!! GTGTAAATTTTTTAGGGTTA+GGG - chr1_2:75561693-75561712 Msa0092790:CDS 25.0%
!! TTTAGAATTAAACCCTAGAT+GGG + chr1_2:75561754-75561773 None:intergenic 25.0%
! AAGAAAATACATGTTATCAG+GGG + chr1_2:75561935-75561954 None:intergenic 25.0%
! CAAGAAAATACATGTTATCA+GGG + chr1_2:75561936-75561955 None:intergenic 25.0%
! ACAAGAAAATACATGTTATC+AGG + chr1_2:75561937-75561956 None:intergenic 25.0%
!!! GTAACTTTAGAATTAGTGTA+TGG - chr1_2:75562244-75562263 Msa0092790:intron 25.0%
! ATCTTAACACTATTAGTGTA+TGG - chr1_2:75562309-75562328 Msa0092790:intron 25.0%
!!! CAAATGTCCTTTTATTTAAC+CGG - chr1_2:75562336-75562355 Msa0092790:intron 25.0%
! CAAAAATAACAGAGGAAAAT+GGG + chr1_2:75562448-75562467 None:intergenic 25.0%
! ACAAAAATAACAGAGGAAAA+TGG + chr1_2:75562449-75562468 None:intergenic 25.0%
! AAAGCAAAGAAATCATTCTT+TGG + chr1_2:75562811-75562830 None:intergenic 25.0%
!!! TGGTGCTGTTTATTTTAATT+AGG - chr1_2:75562844-75562863 Msa0092790:intron 25.0%
!!! GGTGCTGTTTATTTTAATTA+GGG - chr1_2:75562845-75562864 Msa0092790:intron 25.0%
! CGAAAAGAAAATAATGAATG+GGG + chr1_2:75561211-75561230 None:intergenic 25.0%
! AAATCGAAAAAACGAAGAAA+GGG + chr1_2:75561561-75561580 None:intergenic 25.0%
! AAAATCGAAAAAACGAAGAA+AGG + chr1_2:75561562-75561581 None:intergenic 25.0%
!!! TTCTTTATTTTTCTAGGGTT+AGG - chr1_2:75561580-75561599 Msa0092790:CDS 25.0%
!!! TCTTTATTTTTCTAGGGTTA+GGG - chr1_2:75561581-75561600 Msa0092790:CDS 25.0%
!!! TGTGTAAATTTTTTAGGGTT+AGG - chr1_2:75561692-75561711 Msa0092790:CDS 25.0%
!!! GTGTAAATTTTTTAGGGTTA+GGG - chr1_2:75561693-75561712 Msa0092790:CDS 25.0%
!! TTTAGAATTAAACCCTAGAT+GGG + chr1_2:75561754-75561773 None:intergenic 25.0%
! AAGAAAATACATGTTATCAG+GGG + chr1_2:75561935-75561954 None:intergenic 25.0%
! CAAGAAAATACATGTTATCA+GGG + chr1_2:75561936-75561955 None:intergenic 25.0%
! ACAAGAAAATACATGTTATC+AGG + chr1_2:75561937-75561956 None:intergenic 25.0%
!!! GTAACTTTAGAATTAGTGTA+TGG - chr1_2:75562244-75562263 Msa0092790:intron 25.0%
! ATCTTAACACTATTAGTGTA+TGG - chr1_2:75562309-75562328 Msa0092790:intron 25.0%
!!! CAAATGTCCTTTTATTTAAC+CGG - chr1_2:75562336-75562355 Msa0092790:intron 25.0%
! CAAAAATAACAGAGGAAAAT+GGG + chr1_2:75562448-75562467 None:intergenic 25.0%
! ACAAAAATAACAGAGGAAAA+TGG + chr1_2:75562449-75562468 None:intergenic 25.0%
! AAAGCAAAGAAATCATTCTT+TGG + chr1_2:75562811-75562830 None:intergenic 25.0%
!!! TGGTGCTGTTTATTTTAATT+AGG - chr1_2:75562844-75562863 Msa0092790:intron 25.0%
!!! GGTGCTGTTTATTTTAATTA+GGG - chr1_2:75562845-75562864 Msa0092790:intron 25.0%
TGTTTAAACGAAGAAGAGAA+GGG + chr1_2:75561333-75561352 None:intergenic 30.0%
ATGTTTAAACGAAGAAGAGA+AGG + chr1_2:75561334-75561353 None:intergenic 30.0%
!!! ATTTTCAGGTGATTAAGCAA+TGG - chr1_2:75561415-75561434 Msa0092790:three_prime_UTR 30.0%
AACGAAGAAAGGGAAAAAAA+GGG + chr1_2:75561551-75561570 None:intergenic 30.0%
AAACGAAGAAAGGGAAAAAA+AGG + chr1_2:75561552-75561571 None:intergenic 30.0%
TTAGACGATAATTCTCATCT+AGG - chr1_2:75561618-75561637 Msa0092790:CDS 30.0%
TAGACGATAATTCTCATCTA+GGG - chr1_2:75561619-75561638 Msa0092790:CDS 30.0%
!! CTTTAGAATTAAACCCTAGA+TGG + chr1_2:75561755-75561774 None:intergenic 30.0%
! TTTGAAACAGAATTAAGCGA+TGG - chr1_2:75561842-75561861 Msa0092790:intron 30.0%
TTTATAATCAACCCCCAATT+GGG + chr1_2:75561879-75561898 None:intergenic 30.0%
!!! GCAGAGAAGTAATTTTTTGT+TGG - chr1_2:75562147-75562166 Msa0092790:intron 30.0%
AACATCTACATGAAATCCAA+AGG + chr1_2:75562390-75562409 None:intergenic 30.0%
!! AACTGTAAAATTTGCTATGG+TGG - chr1_2:75562493-75562512 Msa0092790:intron 30.0%
AAATGCTAGCAAAGATTTGA+AGG - chr1_2:75562653-75562672 Msa0092790:intron 30.0%
! TTGATATGGTAGTGTGTAAA+TGG - chr1_2:75562935-75562954 Msa0092790:intron 30.0%
TAAATGGTGGTATTCTTATG+TGG - chr1_2:75562951-75562970 Msa0092790:intron 30.0%
TTAGATATTTGTGATGCTGT+TGG - chr1_2:75563001-75563020 Msa0092790:five_prime_UTR 30.0%
TGTTTAAACGAAGAAGAGAA+GGG + chr1_2:75561333-75561352 None:intergenic 30.0%
ATGTTTAAACGAAGAAGAGA+AGG + chr1_2:75561334-75561353 None:intergenic 30.0%
!!! ATTTTCAGGTGATTAAGCAA+TGG - chr1_2:75561415-75561434 Msa0092790:three_prime_UTR 30.0%
AACGAAGAAAGGGAAAAAAA+GGG + chr1_2:75561551-75561570 None:intergenic 30.0%
AAACGAAGAAAGGGAAAAAA+AGG + chr1_2:75561552-75561571 None:intergenic 30.0%
TTAGACGATAATTCTCATCT+AGG - chr1_2:75561618-75561637 Msa0092790:CDS 30.0%
TAGACGATAATTCTCATCTA+GGG - chr1_2:75561619-75561638 Msa0092790:CDS 30.0%
!! CTTTAGAATTAAACCCTAGA+TGG + chr1_2:75561755-75561774 None:intergenic 30.0%
! TTTGAAACAGAATTAAGCGA+TGG - chr1_2:75561842-75561861 Msa0092790:intron 30.0%
TTTATAATCAACCCCCAATT+GGG + chr1_2:75561879-75561898 None:intergenic 30.0%
!!! GCAGAGAAGTAATTTTTTGT+TGG - chr1_2:75562147-75562166 Msa0092790:intron 30.0%
AACATCTACATGAAATCCAA+AGG + chr1_2:75562390-75562409 None:intergenic 30.0%
!! AACTGTAAAATTTGCTATGG+TGG - chr1_2:75562493-75562512 Msa0092790:intron 30.0%
AAATGCTAGCAAAGATTTGA+AGG - chr1_2:75562653-75562672 Msa0092790:intron 30.0%
! TTGATATGGTAGTGTGTAAA+TGG - chr1_2:75562935-75562954 Msa0092790:intron 30.0%
TAAATGGTGGTATTCTTATG+TGG - chr1_2:75562951-75562970 Msa0092790:intron 30.0%
TTAGATATTTGTGATGCTGT+TGG - chr1_2:75563001-75563020 Msa0092790:five_prime_UTR 30.0%
! TAGTTTTCAGATACCCATCT+AGG - chr1_2:75561738-75561757 Msa0092790:intron 35.0%
! AGTTTTCAGATACCCATCTA+GGG - chr1_2:75561739-75561758 Msa0092790:intron 35.0%
! ACAGAATTAAGCGATGGTTT+TGG - chr1_2:75561848-75561867 Msa0092790:intron 35.0%
! CAGAATTAAGCGATGGTTTT+GGG - chr1_2:75561849-75561868 Msa0092790:intron 35.0%
CTTTATAATCAACCCCCAAT+TGG + chr1_2:75561880-75561899 None:intergenic 35.0%
AATCTCAAAAATCAGCTCTC+CGG + chr1_2:75562358-75562377 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG - chr1_2:75562726-75562745 Msa0092790:intron 35.0%
AGCAATTGTTCCCTTGATAA+GGG + chr1_2:75562739-75562758 None:intergenic 35.0%
! TTTTGTTGATCAAGGACTTG+TGG + chr1_2:75562785-75562804 None:intergenic 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG + chr1_2:75562793-75562812 None:intergenic 35.0%
!! TCTTTGCTTTTGTTGTCATG+TGG - chr1_2:75562821-75562840 Msa0092790:CDS 35.0%
! AAATGATGGTGATCACAGTA+GGG - chr1_2:75562890-75562909 Msa0092790:intron 35.0%
! ATATGGTAGTGTGTAAATGG+TGG - chr1_2:75562938-75562957 Msa0092790:intron 35.0%
GGTATTCTTATGTGGTCATT+TGG - chr1_2:75562959-75562978 Msa0092790:intron 35.0%
TTCTTATGTGGTCATTTGGA+TGG - chr1_2:75562963-75562982 Msa0092790:intron 35.0%
! TAGTTTTCAGATACCCATCT+AGG - chr1_2:75561738-75561757 Msa0092790:intron 35.0%
! AGTTTTCAGATACCCATCTA+GGG - chr1_2:75561739-75561758 Msa0092790:intron 35.0%
! ACAGAATTAAGCGATGGTTT+TGG - chr1_2:75561848-75561867 Msa0092790:intron 35.0%
! CAGAATTAAGCGATGGTTTT+GGG - chr1_2:75561849-75561868 Msa0092790:intron 35.0%
CTTTATAATCAACCCCCAAT+TGG + chr1_2:75561880-75561899 None:intergenic 35.0%
AATCTCAAAAATCAGCTCTC+CGG + chr1_2:75562358-75562377 None:intergenic 35.0%
GAACTTGATACCCTTATCAA+GGG - chr1_2:75562726-75562745 Msa0092790:intron 35.0%
AGCAATTGTTCCCTTGATAA+GGG + chr1_2:75562739-75562758 None:intergenic 35.0%
! TTTTGTTGATCAAGGACTTG+TGG + chr1_2:75562785-75562804 None:intergenic 35.0%
!!! TTTGGCAGTTTTGTTGATCA+AGG + chr1_2:75562793-75562812 None:intergenic 35.0%
!! TCTTTGCTTTTGTTGTCATG+TGG - chr1_2:75562821-75562840 Msa0092790:CDS 35.0%
! AAATGATGGTGATCACAGTA+GGG - chr1_2:75562890-75562909 Msa0092790:intron 35.0%
! ATATGGTAGTGTGTAAATGG+TGG - chr1_2:75562938-75562957 Msa0092790:intron 35.0%
GGTATTCTTATGTGGTCATT+TGG - chr1_2:75562959-75562978 Msa0092790:intron 35.0%
TTCTTATGTGGTCATTTGGA+TGG - chr1_2:75562963-75562982 Msa0092790:intron 35.0%
GAAAAGTAGAAGAGAACCCT+TGG + chr1_2:75561311-75561330 None:intergenic 40.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG - chr1_2:75561401-75561420 Msa0092790:three_prime_UTR 40.0%
GATTAAGCAATGGCAGGAAA+AGG - chr1_2:75561425-75561444 Msa0092790:three_prime_UTR 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG - chr1_2:75561593-75561612 Msa0092790:CDS 40.0%
!!! TGGTTTTGGGAATACCCAAT+TGG - chr1_2:75561862-75561881 Msa0092790:intron 40.0%
!!! GGTTTTGGGAATACCCAATT+GGG - chr1_2:75561863-75561882 Msa0092790:intron 40.0%
!!! GTTTTGGGAATACCCAATTG+GGG - chr1_2:75561864-75561883 Msa0092790:intron 40.0%
!! TTTTGGGAATACCCAATTGG+GGG - chr1_2:75561865-75561884 Msa0092790:intron 40.0%
CAGCTCTCCGGTTAAATAAA+AGG + chr1_2:75562346-75562365 None:intergenic 40.0%
AAGCAAAGAGTCCAAGCTAA+TGG - chr1_2:75562552-75562571 Msa0092790:intron 40.0%
AGTGTATTTGGCATCCATTC+TGG - chr1_2:75562596-75562615 Msa0092790:intron 40.0%
GCAAAGATTTGAAGGTGAAG+AGG - chr1_2:75562661-75562680 Msa0092790:intron 40.0%
GGAACTTGATACCCTTATCA+AGG - chr1_2:75562725-75562744 Msa0092790:intron 40.0%
CAGCAATTGTTCCCTTGATA+AGG + chr1_2:75562740-75562759 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG - chr1_2:75562738-75562757 Msa0092790:CDS 40.0%
!! TTGCTTTTGTTGTCATGTGG+TGG - chr1_2:75562824-75562843 Msa0092790:CDS 40.0%
! GAAATGATGGTGATCACAGT+AGG - chr1_2:75562889-75562908 Msa0092790:intron 40.0%
GAAAAGTAGAAGAGAACCCT+TGG + chr1_2:75561311-75561330 None:intergenic 40.0%
!!! CGTTTTGCTCTGGAATTTTC+AGG - chr1_2:75561401-75561420 Msa0092790:three_prime_UTR 40.0%
GATTAAGCAATGGCAGGAAA+AGG - chr1_2:75561425-75561444 Msa0092790:three_prime_UTR 40.0%
! TAGGGTTAGGGTTTGAAACA+AGG - chr1_2:75561593-75561612 Msa0092790:CDS 40.0%
!!! TGGTTTTGGGAATACCCAAT+TGG - chr1_2:75561862-75561881 Msa0092790:intron 40.0%
!!! GGTTTTGGGAATACCCAATT+GGG - chr1_2:75561863-75561882 Msa0092790:intron 40.0%
!!! GTTTTGGGAATACCCAATTG+GGG - chr1_2:75561864-75561883 Msa0092790:intron 40.0%
!! TTTTGGGAATACCCAATTGG+GGG - chr1_2:75561865-75561884 Msa0092790:intron 40.0%
CAGCTCTCCGGTTAAATAAA+AGG + chr1_2:75562346-75562365 None:intergenic 40.0%
AAGCAAAGAGTCCAAGCTAA+TGG - chr1_2:75562552-75562571 Msa0092790:intron 40.0%
AGTGTATTTGGCATCCATTC+TGG - chr1_2:75562596-75562615 Msa0092790:intron 40.0%
GCAAAGATTTGAAGGTGAAG+AGG - chr1_2:75562661-75562680 Msa0092790:intron 40.0%
GGAACTTGATACCCTTATCA+AGG - chr1_2:75562725-75562744 Msa0092790:intron 40.0%
CAGCAATTGTTCCCTTGATA+AGG + chr1_2:75562740-75562759 None:intergenic 40.0%
CTTATCAAGGGAACAATTGC+TGG - chr1_2:75562738-75562757 Msa0092790:CDS 40.0%
!! TTGCTTTTGTTGTCATGTGG+TGG - chr1_2:75562824-75562843 Msa0092790:CDS 40.0%
! GAAATGATGGTGATCACAGT+AGG - chr1_2:75562889-75562908 Msa0092790:intron 40.0%
TCTCTCTCTCTCGATTCCAA+GGG - chr1_2:75561292-75561311 Msa0092790:three_prime_UTR 45.0%
! TTCATTGACGCGTTTTGCTC+TGG - chr1_2:75561391-75561410 Msa0092790:three_prime_UTR 45.0%
TCAGGTGATTAAGCAATGGC+AGG - chr1_2:75561419-75561438 Msa0092790:three_prime_UTR 45.0%
TAAGCAATGGCAGGAAAAGG+AGG - chr1_2:75561428-75561447 Msa0092790:three_prime_UTR 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG - chr1_2:75561434-75561453 Msa0092790:three_prime_UTR 45.0%
TTCTTCTCGTGCTGGAATTC+AGG - chr1_2:75561520-75561539 Msa0092790:CDS 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG - chr1_2:75562509-75562528 Msa0092790:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG - chr1_2:75562510-75562529 Msa0092790:intron 45.0%
AGCAACAGCTGCAGTGTATT+TGG - chr1_2:75562584-75562603 Msa0092790:intron 45.0%
AGCAGTCAGATACTCCAGAA+TGG + chr1_2:75562613-75562632 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG - chr1_2:75562673-75562692 Msa0092790:intron 45.0%
ATAGCAAGCTGCAAATGCCT+TGG + chr1_2:75562693-75562712 None:intergenic 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG - chr1_2:75562695-75562714 Msa0092790:intron 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG - chr1_2:75562696-75562715 Msa0092790:intron 45.0%
ATCAAGGGAACAATTGCTGG+TGG - chr1_2:75562741-75562760 Msa0092790:CDS 45.0%
ATCAAGGACTTGTGGATGTG+AGG + chr1_2:75562777-75562796 None:intergenic 45.0%
TCTCTCTCTCTCGATTCCAA+GGG - chr1_2:75561292-75561311 Msa0092790:three_prime_UTR 45.0%
! TTCATTGACGCGTTTTGCTC+TGG - chr1_2:75561391-75561410 Msa0092790:three_prime_UTR 45.0%
TCAGGTGATTAAGCAATGGC+AGG - chr1_2:75561419-75561438 Msa0092790:three_prime_UTR 45.0%
TAAGCAATGGCAGGAAAAGG+AGG - chr1_2:75561428-75561447 Msa0092790:three_prime_UTR 45.0%
ATGGCAGGAAAAGGAGGAAA+AGG - chr1_2:75561434-75561453 Msa0092790:three_prime_UTR 45.0%
TTCTTCTCGTGCTGGAATTC+AGG - chr1_2:75561520-75561539 Msa0092790:CDS 45.0%
ATGGTGGTTGTAGTTTCCTG+TGG - chr1_2:75562509-75562528 Msa0092790:intron 45.0%
TGGTGGTTGTAGTTTCCTGT+GGG - chr1_2:75562510-75562529 Msa0092790:intron 45.0%
AGCAACAGCTGCAGTGTATT+TGG - chr1_2:75562584-75562603 Msa0092790:intron 45.0%
AGCAGTCAGATACTCCAGAA+TGG + chr1_2:75562613-75562632 None:intergenic 45.0%
AGGTGAAGAGGATTACACCA+AGG - chr1_2:75562673-75562692 Msa0092790:intron 45.0%
ATAGCAAGCTGCAAATGCCT+TGG + chr1_2:75562693-75562712 None:intergenic 45.0%
!! GCATTTGCAGCTTGCTATCA+GGG - chr1_2:75562695-75562714 Msa0092790:intron 45.0%
!! CATTTGCAGCTTGCTATCAG+GGG - chr1_2:75562696-75562715 Msa0092790:intron 45.0%
ATCAAGGGAACAATTGCTGG+TGG - chr1_2:75562741-75562760 Msa0092790:CDS 45.0%
ATCAAGGACTTGTGGATGTG+AGG + chr1_2:75562777-75562796 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr1_2:75562071-75562090 Msa0092790:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr1_2:75562071-75562090 Msa0092790:intron 5.0%
CTCTCTCTCTCTCGATTCCA+AGG - chr1_2:75561291-75561310 Msa0092790:three_prime_UTR 50.0%
GTCCTTGTCTTTGTTAGCCG+CGG + chr1_2:75561480-75561499 None:intergenic 50.0%
GCACGAGAAGAACGAGAAGT+GGG + chr1_2:75561512-75561531 None:intergenic 50.0%
AGCACGAGAAGAACGAGAAG+TGG + chr1_2:75561513-75561532 None:intergenic 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG - chr1_2:75561512-75561531 Msa0092790:CDS 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG - chr1_2:75562514-75562533 Msa0092790:intron 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG + chr1_2:75562542-75562561 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG - chr1_2:75562561-75562580 Msa0092790:intron 50.0%
GACTGCTGAAGTTCTTGAGC+TGG - chr1_2:75562626-75562645 Msa0092790:intron 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG - chr1_2:75562694-75562713 Msa0092790:intron 50.0%
AAGGGAACAATTGCTGGTGG+TGG - chr1_2:75562744-75562763 Msa0092790:CDS 50.0%
CTCTCTCTCTCTCGATTCCA+AGG - chr1_2:75561291-75561310 Msa0092790:three_prime_UTR 50.0%
GTCCTTGTCTTTGTTAGCCG+CGG + chr1_2:75561480-75561499 None:intergenic 50.0%
GCACGAGAAGAACGAGAAGT+GGG + chr1_2:75561512-75561531 None:intergenic 50.0%
AGCACGAGAAGAACGAGAAG+TGG + chr1_2:75561513-75561532 None:intergenic 50.0%
ACTTCTCGTTCTTCTCGTGC+TGG - chr1_2:75561512-75561531 Msa0092790:CDS 50.0%
GGTTGTAGTTTCCTGTGGGT+AGG - chr1_2:75562514-75562533 Msa0092790:intron 50.0%
CTCTTTGCTTCAGCTGTCTG+TGG + chr1_2:75562542-75562561 None:intergenic 50.0%
! GTCCAAGCTAATGGACGTGT+CGG - chr1_2:75562561-75562580 Msa0092790:intron 50.0%
GACTGCTGAAGTTCTTGAGC+TGG - chr1_2:75562626-75562645 Msa0092790:intron 50.0%
!! GGCATTTGCAGCTTGCTATC+AGG - chr1_2:75562694-75562713 Msa0092790:intron 50.0%
AAGGGAACAATTGCTGGTGG+TGG - chr1_2:75562744-75562763 Msa0092790:CDS 50.0%
CTTGTCTTTGTTAGCCGCGG+TGG + chr1_2:75561477-75561496 None:intergenic 55.0%
CACCGCGGCTAACAAAGACA+AGG - chr1_2:75561475-75561494 Msa0092790:CDS 55.0%
TGTCTGTGGATCCTACCCAC+AGG + chr1_2:75562528-75562547 None:intergenic 55.0%
CTCCGACACGTCCATTAGCT+TGG + chr1_2:75562566-75562585 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG - chr1_2:75562630-75562649 Msa0092790:intron 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG - chr1_2:75562704-75562723 Msa0092790:intron 55.0%
CTTGTCTTTGTTAGCCGCGG+TGG + chr1_2:75561477-75561496 None:intergenic 55.0%
CACCGCGGCTAACAAAGACA+AGG - chr1_2:75561475-75561494 Msa0092790:CDS 55.0%
TGTCTGTGGATCCTACCCAC+AGG + chr1_2:75562528-75562547 None:intergenic 55.0%
CTCCGACACGTCCATTAGCT+TGG + chr1_2:75562566-75562585 None:intergenic 55.0%
GCTGAAGTTCTTGAGCTGGC+TGG - chr1_2:75562630-75562649 Msa0092790:intron 55.0%
!! GCTTGCTATCAGGGGAGATG+AGG - chr1_2:75562704-75562723 Msa0092790:intron 55.0%
CGTTGCAGCGAAAACCACCG+CGG - chr1_2:75561460-75561479 Msa0092790:CDS 60.0%
CGTTGCAGCGAAAACCACCG+CGG - chr1_2:75561460-75561479 Msa0092790:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75561207 75563071 75561207 ID=Msa0092790;Name=Msa0092790
chr1_2 mRNA 75561207 75563071 75561207 ID=Msa0092790-mRNA-1;Parent=Msa0092790;Name=Msa0092790-mRNA-1;_AED=0.16;_eAED=0.16;_QI=118|1|1|1|0.5|0.33|3|253|134
chr1_2 exon 75561207 75561756 75561207 ID=Msa0092790-mRNA-1:exon:26569;Parent=Msa0092790-mRNA-1
chr1_2 exon 75562737 75562855 75562737 ID=Msa0092790-mRNA-1:exon:26568;Parent=Msa0092790-mRNA-1
chr1_2 exon 75562965 75563071 75562965 ID=Msa0092790-mRNA-1:exon:26567;Parent=Msa0092790-mRNA-1
chr1_2 five_prime_UTR 75562965 75563071 75562965 ID=Msa0092790-mRNA-1:five_prime_utr;Parent=Msa0092790-mRNA-1
chr1_2 five_prime_UTR 75562845 75562855 75562845 ID=Msa0092790-mRNA-1:five_prime_utr;Parent=Msa0092790-mRNA-1
chr1_2 CDS 75562737 75562844 75562737 ID=Msa0092790-mRNA-1:cds;Parent=Msa0092790-mRNA-1
chr1_2 CDS 75561460 75561756 75561460 ID=Msa0092790-mRNA-1:cds;Parent=Msa0092790-mRNA-1
chr1_2 three_prime_UTR 75561207 75561459 75561207 ID=Msa0092790-mRNA-1:three_prime_utr;Parent=Msa0092790-mRNA-1
Gene Sequence

>Msa0092790

ATGGCAGGAAAAGGAGGAAAAGGACTCGTTGCAGCGAAAACCACCGCGGCTAACAAAGACAAGGACAAGAAGAAACCCACTTCTCGTTCTTCTCGTGCTGGAATTCAGTTTCCTGTGGGTAGGATCCACAGACAGCTGAAGCAAAGAGTCCAAGCTAATGGACGTGTCGGAGCAACAGCTGCAGTGTATTTGGCATCCATTCTGGAGTATCTGACTGCTGAAGTTCTTGAGCTGGCTGGAAATGCTAGCAAAGATTTGAAGGTGAAGAGGATTACACCAAGGCATTTGCAGCTTGCTATCAGGGGAGATGAGGAACTTGATACCCTTATCAAGGGAACAATTGCTGGTGGTGGTGTCATTCCTCACATCCACAAGTCCTTGATCAACAAAACTGCCAAAGAATGA

Protein sequence

>Msa0092790

MAGKGGKGLVAAKTTAANKDKDKKKPTSRSSRAGIQFPVGRIHRQLKQRVQANGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE*