AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377690 MtrunA17_Chr3g0128821 98.830 171 2 0 1 171 1 171 3.22e-126 351
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377690 AT3G56290.1 60.920 174 62 2 1 170 1 172 6.53e-70 209

Find 79 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATACAGTGTTCTAGATTA+AGG 0.167310 3_1:-78324783 None:intergenic
TGCTCAAGAACATACATAAA+TGG 0.182001 3_1:+78323303 Msa0377690:exon
AATTTAACTATGAGAAATTT+AGG 0.207319 3_1:-78324858 None:intergenic
CACTGTTGCCACTCACAATT+TGG 0.218626 3_1:-78323131 None:intergenic
AAATGGAAACTATAATTCTT+TGG 0.223047 3_1:+78324445 Msa0377690:three_prime_UTR
TTCTTCCTTCTTCTCTTGTT+TGG 0.250102 3_1:-78323443 None:intergenic
TAGGAGATTCTTACATGTTT+TGG 0.254396 3_1:+78324659 Msa0377690:three_prime_UTR
AAATTATGAAAGTTGGTATT+TGG 0.265588 3_1:+78324876 Msa0377690:three_prime_UTR
ACAAAGTTCAAATTCATTCT+AGG 0.289101 3_1:+78323273 Msa0377690:five_prime_UTR
AACAAATGGAGAATTGATTC+AGG 0.315306 3_1:+78324310 Msa0377690:three_prime_UTR
GGGTAAAGAGCAGAATTCTT+AGG 0.319840 3_1:-78324915 None:intergenic
GCAAATTCCCTTTGGCCATT+AGG 0.322629 3_1:+78324260 Msa0377690:three_prime_UTR
GTATATAGTAGTTTCCTCTT+TGG 0.336529 3_1:+78324133 Msa0377690:three_prime_UTR
TGTGGACTATGTGGCACCTT+AGG 0.339207 3_1:-78323098 None:intergenic
GCTAGAGAAGCCACAAAATC+TGG 0.342436 3_1:+78323559 Msa0377690:CDS
AATACAGTGTTCTAGATTAA+GGG 0.353386 3_1:-78324782 None:intergenic
AATGGAAACTATAATTCTTT+GGG 0.354784 3_1:+78324446 Msa0377690:three_prime_UTR
CACTTGTCTTGCTTCACCCT+TGG 0.361736 3_1:-78323954 None:intergenic
TAAGAATGCAACCGGTCATT+TGG 0.368968 3_1:-78324156 None:intergenic
AACATGCAAGGTATGCAAAA+AGG 0.370388 3_1:+78323928 Msa0377690:CDS
AAGACAAGATATAATGATAA+AGG 0.390497 3_1:-78324199 None:intergenic
TGTGCAGAGAAGGCAAAATC+TGG 0.391867 3_1:+78324007 Msa0377690:CDS
GGAGCTCTTAGAAGGAAAAT+TGG 0.394746 3_1:+78323700 Msa0377690:CDS
CATAGTTAAATTATGAAAGT+TGG 0.410859 3_1:+78324869 Msa0377690:three_prime_UTR
GAGAATATGTTGAAGAGGGT+TGG 0.421247 3_1:+78323897 Msa0377690:CDS
AGAATATGTTGAAGAGGGTT+GGG 0.437524 3_1:+78323898 Msa0377690:CDS
GCTCAAGAACATACATAAAT+GGG 0.443542 3_1:+78323304 Msa0377690:exon
TGCAGTATGGAGCTCTTAGA+AGG 0.445617 3_1:+78323692 Msa0377690:intron
TGAGCATCTTGTGCGGATCT+TGG 0.446163 3_1:-78323523 None:intergenic
AACATACATAAATGGGTCTT+GGG 0.452482 3_1:+78323311 Msa0377690:exon
ATAGTTGTGTCTCGAACAAA+TGG 0.456825 3_1:+78324296 Msa0377690:three_prime_UTR
GAACATACATAAATGGGTCT+TGG 0.457157 3_1:+78323310 Msa0377690:exon
GTGGACTATGTGGCACCTTA+GGG 0.458509 3_1:-78323097 None:intergenic
TTCAGCCAAACAAGAGAAGA+AGG 0.459242 3_1:+78323438 Msa0377690:CDS
TGTATGGTTAAGAATGCAAC+CGG 0.464623 3_1:-78324164 None:intergenic
CCATCGGTGCAAATTCCCTT+TGG 0.464858 3_1:+78324252 Msa0377690:three_prime_UTR
TTATGAAAGTTGGTATTTGG+TGG 0.465540 3_1:+78324879 Msa0377690:three_prime_UTR
TTCCTCTTTGGCCAAATGAC+CGG 0.466047 3_1:+78324145 Msa0377690:three_prime_UTR
ATAAAATTAAAATCACCTAA+TGG 0.470916 3_1:-78324275 None:intergenic
CAATTTGGTGGTTAACATTG+TGG 0.496236 3_1:-78323116 None:intergenic
TATTTGAAGTTAATCTAAGC+GGG 0.496404 3_1:+78324732 Msa0377690:three_prime_UTR
GAAAATTGGTGGGACTTACA+AGG 0.499480 3_1:+78323714 Msa0377690:CDS
TGTTGCCACTCACAATTTGG+TGG 0.503822 3_1:-78323128 None:intergenic
GCAAGACAAGTGGACAAGCT+TGG 0.505588 3_1:+78323965 Msa0377690:CDS
GGGCATCAAATTGTAGCCAC+AGG 0.511147 3_1:-78323176 None:intergenic
CCAAAGGGAATTTGCACCGA+TGG 0.513491 3_1:-78324252 None:intergenic
GTATAATAAGGAGGGATCAA+TGG 0.516835 3_1:-78323340 None:intergenic
AATCTGGAGAACAAATGAGC+AGG 0.519508 3_1:+78323575 Msa0377690:CDS
TTATGTATGTTCTTGAGCAA+TGG 0.520041 3_1:-78323299 None:intergenic
AAAATCACCTAATGGCCAAA+GGG 0.528222 3_1:-78324267 None:intergenic
TAAGAATCTCCTAGATCTGA+TGG 0.528694 3_1:-78324649 None:intergenic
TTATAAAATACAAAATTCGT+AGG 0.530390 3_1:+78324589 Msa0377690:three_prime_UTR
CTCTTAGAAGGAAAATTGGT+GGG 0.533115 3_1:+78323704 Msa0377690:CDS
TGTTCATAAAGAGAAGAGTC+TGG 0.537908 3_1:-78324041 None:intergenic
AGAACAAATGAGCAGGGAGC+AGG 0.543107 3_1:+78323582 Msa0377690:CDS
GGATGGAGAATATGTTGAAG+AGG 0.544093 3_1:+78323892 Msa0377690:CDS
TCATGTAGCATGTGCAGAGA+AGG 0.566077 3_1:+78323997 Msa0377690:CDS
ATCAAATTGTAGCCACAGGT+TGG 0.571562 3_1:-78323172 None:intergenic
ATCTGGAGAACAAATGAGCA+GGG 0.576834 3_1:+78323576 Msa0377690:CDS
TAAAATCACCTAATGGCCAA+AGG 0.580336 3_1:-78324268 None:intergenic
AACCGGTCATTTGGCCAAAG+AGG 0.595039 3_1:-78324147 None:intergenic
AGATGCTCAGCTTATACAAG+AGG 0.596458 3_1:+78323537 Msa0377690:CDS
GATGGAGAATATGTTGAAGA+GGG 0.605246 3_1:+78323893 Msa0377690:CDS
GCTCTTAGAAGGAAAATTGG+TGG 0.606049 3_1:+78323703 Msa0377690:CDS
TATAAAATACAAAATTCGTA+GGG 0.609177 3_1:+78324590 Msa0377690:three_prime_UTR
CGTGCGAGAAGAGACAAAGG+AGG 0.621848 3_1:-78324480 None:intergenic
CAAGGGTGAAGCAAGACAAG+TGG 0.622923 3_1:+78323955 Msa0377690:CDS
GGTTAACATTGTGGACTATG+TGG 0.624904 3_1:-78323107 None:intergenic
GTGCGTGCGAGAAGAGACAA+AGG 0.637882 3_1:-78324483 None:intergenic
TTGGGTAGACAAAACATGCA+AGG 0.654898 3_1:+78323916 Msa0377690:CDS
TGTGAGTGGCAACAGTGCTG+TGG 0.655065 3_1:+78323137 Msa0377690:five_prime_UTR
TATAAGCTGAGCATCTTGTG+CGG 0.655921 3_1:-78323530 None:intergenic
AACATGACATGATATTGTAG+TGG 0.657392 3_1:+78324060 Msa0377690:exon
TTATTTGAAGTTAATCTAAG+CGG 0.661249 3_1:+78324731 Msa0377690:three_prime_UTR
AAGTTCAAATTCATTCTAGG+TGG 0.666203 3_1:+78323276 Msa0377690:five_prime_UTR
GTTAACCACCAAATTGTGAG+TGG 0.666831 3_1:+78323123 Msa0377690:five_prime_UTR
ATTTGAAGTTAATCTAAGCG+GGG 0.689734 3_1:+78324733 Msa0377690:three_prime_UTR
GTGCGAGAAGAGACAAAGGA+GGG 0.705685 3_1:-78324479 None:intergenic
ACAAAATTAACACCAACCTG+TGG 0.731920 3_1:+78323160 Msa0377690:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCCAATTAAAAAAATTT+AGG - chr3_1:78324375-78324394 None:intergenic 10.0%
!! TAATCCAATTAAAAAAATTT+AGG - chr3_1:78324375-78324394 None:intergenic 10.0%
!! AAGGAAAATAAAAATTTGTA+TGG - chr3_1:78324183-78324202 None:intergenic 15.0%
!! ATAAAATTAAAATCACCTAA+TGG - chr3_1:78324278-78324297 None:intergenic 15.0%
!!! TTGTCCTAAATTTTTTTAAT+TGG + chr3_1:78324368-78324387 Msa0377690:three_prime_UTR 15.0%
!! AATTATAAAATGCGAAAAAA+TGG + chr3_1:78324512-78324531 Msa0377690:three_prime_UTR 15.0%
!! TTATAAAATACAAAATTCGT+AGG + chr3_1:78324589-78324608 Msa0377690:three_prime_UTR 15.0%
!! TATAAAATACAAAATTCGTA+GGG + chr3_1:78324590-78324609 Msa0377690:three_prime_UTR 15.0%
!! AATTTAACTATGAGAAATTT+AGG - chr3_1:78324861-78324880 None:intergenic 15.0%
!! AAGGAAAATAAAAATTTGTA+TGG - chr3_1:78324183-78324202 None:intergenic 15.0%
!! ATAAAATTAAAATCACCTAA+TGG - chr3_1:78324278-78324297 None:intergenic 15.0%
!!! TTGTCCTAAATTTTTTTAAT+TGG + chr3_1:78324368-78324387 Msa0377690:three_prime_UTR 15.0%
!! AATTATAAAATGCGAAAAAA+TGG + chr3_1:78324512-78324531 Msa0377690:three_prime_UTR 15.0%
!! TTATAAAATACAAAATTCGT+AGG + chr3_1:78324589-78324608 Msa0377690:three_prime_UTR 15.0%
!! TATAAAATACAAAATTCGTA+GGG + chr3_1:78324590-78324609 Msa0377690:three_prime_UTR 15.0%
!! AATTTAACTATGAGAAATTT+AGG - chr3_1:78324861-78324880 None:intergenic 15.0%
!! AAAAACTTGTATAATAAGGA+GGG - chr3_1:78323351-78323370 None:intergenic 20.0%
!! GAAGAAAAACTTGTATAATA+AGG - chr3_1:78323355-78323374 None:intergenic 20.0%
!!! TTTTTGTAAATAATGCAGTA+TGG + chr3_1:78323679-78323698 Msa0377690:intron 20.0%
!!! TTTTTCAAATCTTATGTTGA+AGG + chr3_1:78323739-78323758 Msa0377690:CDS 20.0%
!!! AATTATAGGAGTATATTGTT+TGG + chr3_1:78323825-78323844 Msa0377690:intron 20.0%
!! AAGACAAGATATAATGATAA+AGG - chr3_1:78324202-78324221 None:intergenic 20.0%
!!! ATCAGAATTTTAATCTGAAA+TGG + chr3_1:78324428-78324447 Msa0377690:three_prime_UTR 20.0%
!! AAATGGAAACTATAATTCTT+TGG + chr3_1:78324445-78324464 Msa0377690:three_prime_UTR 20.0%
!! AATGGAAACTATAATTCTTT+GGG + chr3_1:78324446-78324465 Msa0377690:three_prime_UTR 20.0%
!!! TTATTTGAAGTTAATCTAAG+CGG + chr3_1:78324731-78324750 Msa0377690:three_prime_UTR 20.0%
!! CATAGTTAAATTATGAAAGT+TGG + chr3_1:78324869-78324888 Msa0377690:three_prime_UTR 20.0%
!!! AAATTATGAAAGTTGGTATT+TGG + chr3_1:78324876-78324895 Msa0377690:three_prime_UTR 20.0%
!! AAAAACTTGTATAATAAGGA+GGG - chr3_1:78323351-78323370 None:intergenic 20.0%
!! GAAGAAAAACTTGTATAATA+AGG - chr3_1:78323355-78323374 None:intergenic 20.0%
!!! TTTTTGTAAATAATGCAGTA+TGG + chr3_1:78323679-78323698 Msa0377690:intron 20.0%
!!! TTTTTCAAATCTTATGTTGA+AGG + chr3_1:78323739-78323758 Msa0377690:CDS 20.0%
!!! AATTATAGGAGTATATTGTT+TGG + chr3_1:78323825-78323844 Msa0377690:intron 20.0%
!! AAGACAAGATATAATGATAA+AGG - chr3_1:78324202-78324221 None:intergenic 20.0%
!!! ATCAGAATTTTAATCTGAAA+TGG + chr3_1:78324428-78324447 Msa0377690:three_prime_UTR 20.0%
!! AAATGGAAACTATAATTCTT+TGG + chr3_1:78324445-78324464 Msa0377690:three_prime_UTR 20.0%
!! AATGGAAACTATAATTCTTT+GGG + chr3_1:78324446-78324465 Msa0377690:three_prime_UTR 20.0%
!!! TTATTTGAAGTTAATCTAAG+CGG + chr3_1:78324731-78324750 Msa0377690:three_prime_UTR 20.0%
!! CATAGTTAAATTATGAAAGT+TGG + chr3_1:78324869-78324888 Msa0377690:three_prime_UTR 20.0%
!!! AAATTATGAAAGTTGGTATT+TGG + chr3_1:78324876-78324895 Msa0377690:three_prime_UTR 20.0%
!! TTCATTCTTTTCAGTATTTG+GGG - chr3_1:78323199-78323218 None:intergenic 25.0%
!! CTTCATTCTTTTCAGTATTT+GGG - chr3_1:78323200-78323219 None:intergenic 25.0%
! ACAAAGTTCAAATTCATTCT+AGG + chr3_1:78323273-78323292 Msa0377690:five_prime_UTR 25.0%
! GAAAAACTTGTATAATAAGG+AGG - chr3_1:78323352-78323371 None:intergenic 25.0%
!! CATGTGATTAGTTGAATTAT+AGG + chr3_1:78323811-78323830 Msa0377690:intron 25.0%
!!! TTTTTAGTAGAAGCAATTGT+AGG - chr3_1:78324409-78324428 None:intergenic 25.0%
! TATAAAATGCGAAAAAATGG+AGG + chr3_1:78324515-78324534 Msa0377690:three_prime_UTR 25.0%
! ATAAAATGCGAAAAAATGGA+GGG + chr3_1:78324516-78324535 Msa0377690:three_prime_UTR 25.0%
!! TATTTGAAGTTAATCTAAGC+GGG + chr3_1:78324732-78324751 Msa0377690:three_prime_UTR 25.0%
!! AATACAGTGTTCTAGATTAA+GGG - chr3_1:78324785-78324804 None:intergenic 25.0%
!! TTCATTCTTTTCAGTATTTG+GGG - chr3_1:78323199-78323218 None:intergenic 25.0%
!! CTTCATTCTTTTCAGTATTT+GGG - chr3_1:78323200-78323219 None:intergenic 25.0%
! ACAAAGTTCAAATTCATTCT+AGG + chr3_1:78323273-78323292 Msa0377690:five_prime_UTR 25.0%
! GAAAAACTTGTATAATAAGG+AGG - chr3_1:78323352-78323371 None:intergenic 25.0%
!! CATGTGATTAGTTGAATTAT+AGG + chr3_1:78323811-78323830 Msa0377690:intron 25.0%
!!! TTTTTAGTAGAAGCAATTGT+AGG - chr3_1:78324409-78324428 None:intergenic 25.0%
! TATAAAATGCGAAAAAATGG+AGG + chr3_1:78324515-78324534 Msa0377690:three_prime_UTR 25.0%
! ATAAAATGCGAAAAAATGGA+GGG + chr3_1:78324516-78324535 Msa0377690:three_prime_UTR 25.0%
!! TATTTGAAGTTAATCTAAGC+GGG + chr3_1:78324732-78324751 Msa0377690:three_prime_UTR 25.0%
!! AATACAGTGTTCTAGATTAA+GGG - chr3_1:78324785-78324804 None:intergenic 25.0%
! GCTTCATTCTTTTCAGTATT+TGG - chr3_1:78323201-78323220 None:intergenic 30.0%
AAGTTCAAATTCATTCTAGG+TGG + chr3_1:78323276-78323295 Msa0377690:five_prime_UTR 30.0%
TTATGTATGTTCTTGAGCAA+TGG - chr3_1:78323302-78323321 None:intergenic 30.0%
TGCTCAAGAACATACATAAA+TGG + chr3_1:78323303-78323322 Msa0377690:exon 30.0%
GCTCAAGAACATACATAAAT+GGG + chr3_1:78323304-78323323 Msa0377690:exon 30.0%
AACATACATAAATGGGTCTT+GGG + chr3_1:78323311-78323330 Msa0377690:exon 30.0%
! AGTTTTTCTTCAAAGTCATC+AGG + chr3_1:78323364-78323383 Msa0377690:CDS 30.0%
AACATGACATGATATTGTAG+TGG + chr3_1:78324060-78324079 Msa0377690:exon 30.0%
GTATATAGTAGTTTCCTCTT+TGG + chr3_1:78324133-78324152 Msa0377690:three_prime_UTR 30.0%
! TCTTGTCTTGTAGACTTTTT+AGG + chr3_1:78324213-78324232 Msa0377690:three_prime_UTR 30.0%
! CTTGTCTTGTAGACTTTTTA+GGG + chr3_1:78324214-78324233 Msa0377690:three_prime_UTR 30.0%
!!! GTATGTTGTTTTGAATCCAT+CGG + chr3_1:78324236-78324255 Msa0377690:three_prime_UTR 30.0%
! AACAAATGGAGAATTGATTC+AGG + chr3_1:78324310-78324329 Msa0377690:three_prime_UTR 30.0%
AAAAAATGGAGGGTTTGTAA+AGG + chr3_1:78324526-78324545 Msa0377690:three_prime_UTR 30.0%
!!! AAAGGTGTTTTAGCATGTTT+TGG + chr3_1:78324544-78324563 Msa0377690:three_prime_UTR 30.0%
!!! TTCCATCGTATTAGTTTTTC+AGG - chr3_1:78324618-78324637 None:intergenic 30.0%
! GAATTTTTACCATCAGATCT+AGG + chr3_1:78324640-78324659 Msa0377690:three_prime_UTR 30.0%
! TAGGAGATTCTTACATGTTT+TGG + chr3_1:78324659-78324678 Msa0377690:three_prime_UTR 30.0%
! ATTTGAAGTTAATCTAAGCG+GGG + chr3_1:78324733-78324752 Msa0377690:three_prime_UTR 30.0%
! GAATACAGTGTTCTAGATTA+AGG - chr3_1:78324786-78324805 None:intergenic 30.0%
!! TTATGAAAGTTGGTATTTGG+TGG + chr3_1:78324879-78324898 Msa0377690:three_prime_UTR 30.0%
! GCTTCATTCTTTTCAGTATT+TGG - chr3_1:78323201-78323220 None:intergenic 30.0%
AAGTTCAAATTCATTCTAGG+TGG + chr3_1:78323276-78323295 Msa0377690:five_prime_UTR 30.0%
TTATGTATGTTCTTGAGCAA+TGG - chr3_1:78323302-78323321 None:intergenic 30.0%
TGCTCAAGAACATACATAAA+TGG + chr3_1:78323303-78323322 Msa0377690:exon 30.0%
GCTCAAGAACATACATAAAT+GGG + chr3_1:78323304-78323323 Msa0377690:exon 30.0%
AACATACATAAATGGGTCTT+GGG + chr3_1:78323311-78323330 Msa0377690:exon 30.0%
! AGTTTTTCTTCAAAGTCATC+AGG + chr3_1:78323364-78323383 Msa0377690:CDS 30.0%
AACATGACATGATATTGTAG+TGG + chr3_1:78324060-78324079 Msa0377690:exon 30.0%
GTATATAGTAGTTTCCTCTT+TGG + chr3_1:78324133-78324152 Msa0377690:three_prime_UTR 30.0%
! TCTTGTCTTGTAGACTTTTT+AGG + chr3_1:78324213-78324232 Msa0377690:three_prime_UTR 30.0%
! CTTGTCTTGTAGACTTTTTA+GGG + chr3_1:78324214-78324233 Msa0377690:three_prime_UTR 30.0%
!!! GTATGTTGTTTTGAATCCAT+CGG + chr3_1:78324236-78324255 Msa0377690:three_prime_UTR 30.0%
! AACAAATGGAGAATTGATTC+AGG + chr3_1:78324310-78324329 Msa0377690:three_prime_UTR 30.0%
AAAAAATGGAGGGTTTGTAA+AGG + chr3_1:78324526-78324545 Msa0377690:three_prime_UTR 30.0%
!!! AAAGGTGTTTTAGCATGTTT+TGG + chr3_1:78324544-78324563 Msa0377690:three_prime_UTR 30.0%
!!! TTCCATCGTATTAGTTTTTC+AGG - chr3_1:78324618-78324637 None:intergenic 30.0%
! GAATTTTTACCATCAGATCT+AGG + chr3_1:78324640-78324659 Msa0377690:three_prime_UTR 30.0%
! TAGGAGATTCTTACATGTTT+TGG + chr3_1:78324659-78324678 Msa0377690:three_prime_UTR 30.0%
! ATTTGAAGTTAATCTAAGCG+GGG + chr3_1:78324733-78324752 Msa0377690:three_prime_UTR 30.0%
! GAATACAGTGTTCTAGATTA+AGG - chr3_1:78324786-78324805 None:intergenic 30.0%
!! TTATGAAAGTTGGTATTTGG+TGG + chr3_1:78324879-78324898 Msa0377690:three_prime_UTR 30.0%
! CAATTTGGTGGTTAACATTG+TGG - chr3_1:78323119-78323138 None:intergenic 35.0%
ACAAAATTAACACCAACCTG+TGG + chr3_1:78323160-78323179 Msa0377690:five_prime_UTR 35.0%
GAACATACATAAATGGGTCT+TGG + chr3_1:78323310-78323329 Msa0377690:exon 35.0%
GTATAATAAGGAGGGATCAA+TGG - chr3_1:78323343-78323362 None:intergenic 35.0%
TTCTTCCTTCTTCTCTTGTT+TGG - chr3_1:78323446-78323465 None:intergenic 35.0%
! CATTTGTTCTCCAGATTTTG+TGG - chr3_1:78323572-78323591 None:intergenic 35.0%
CTCTTAGAAGGAAAATTGGT+GGG + chr3_1:78323704-78323723 Msa0377690:CDS 35.0%
! AATCTTGTTGTATTGAGCAG+TGG + chr3_1:78323871-78323890 Msa0377690:intron 35.0%
GATGGAGAATATGTTGAAGA+GGG + chr3_1:78323893-78323912 Msa0377690:CDS 35.0%
AGAATATGTTGAAGAGGGTT+GGG + chr3_1:78323898-78323917 Msa0377690:CDS 35.0%
AACATGCAAGGTATGCAAAA+AGG + chr3_1:78323928-78323947 Msa0377690:CDS 35.0%
TGTTCATAAAGAGAAGAGTC+TGG - chr3_1:78324044-78324063 None:intergenic 35.0%
TGTATGGTTAAGAATGCAAC+CGG - chr3_1:78324167-78324186 None:intergenic 35.0%
AAAATCACCTAATGGCCAAA+GGG - chr3_1:78324270-78324289 None:intergenic 35.0%
TAAAATCACCTAATGGCCAA+AGG - chr3_1:78324271-78324290 None:intergenic 35.0%
ATAGTTGTGTCTCGAACAAA+TGG + chr3_1:78324296-78324315 Msa0377690:three_prime_UTR 35.0%
!! GGAGGATGTTTAAAGCTTTT+CGG + chr3_1:78324565-78324584 Msa0377690:three_prime_UTR 35.0%
TGCCTGAAAAACTAATACGA+TGG + chr3_1:78324613-78324632 Msa0377690:three_prime_UTR 35.0%
TAAGAATCTCCTAGATCTGA+TGG - chr3_1:78324652-78324671 None:intergenic 35.0%
! CAATTTGGTGGTTAACATTG+TGG - chr3_1:78323119-78323138 None:intergenic 35.0%
ACAAAATTAACACCAACCTG+TGG + chr3_1:78323160-78323179 Msa0377690:five_prime_UTR 35.0%
GAACATACATAAATGGGTCT+TGG + chr3_1:78323310-78323329 Msa0377690:exon 35.0%
GTATAATAAGGAGGGATCAA+TGG - chr3_1:78323343-78323362 None:intergenic 35.0%
TTCTTCCTTCTTCTCTTGTT+TGG - chr3_1:78323446-78323465 None:intergenic 35.0%
! CATTTGTTCTCCAGATTTTG+TGG - chr3_1:78323572-78323591 None:intergenic 35.0%
CTCTTAGAAGGAAAATTGGT+GGG + chr3_1:78323704-78323723 Msa0377690:CDS 35.0%
! AATCTTGTTGTATTGAGCAG+TGG + chr3_1:78323871-78323890 Msa0377690:intron 35.0%
GATGGAGAATATGTTGAAGA+GGG + chr3_1:78323893-78323912 Msa0377690:CDS 35.0%
AGAATATGTTGAAGAGGGTT+GGG + chr3_1:78323898-78323917 Msa0377690:CDS 35.0%
AACATGCAAGGTATGCAAAA+AGG + chr3_1:78323928-78323947 Msa0377690:CDS 35.0%
TGTTCATAAAGAGAAGAGTC+TGG - chr3_1:78324044-78324063 None:intergenic 35.0%
TGTATGGTTAAGAATGCAAC+CGG - chr3_1:78324167-78324186 None:intergenic 35.0%
AAAATCACCTAATGGCCAAA+GGG - chr3_1:78324270-78324289 None:intergenic 35.0%
TAAAATCACCTAATGGCCAA+AGG - chr3_1:78324271-78324290 None:intergenic 35.0%
ATAGTTGTGTCTCGAACAAA+TGG + chr3_1:78324296-78324315 Msa0377690:three_prime_UTR 35.0%
!! GGAGGATGTTTAAAGCTTTT+CGG + chr3_1:78324565-78324584 Msa0377690:three_prime_UTR 35.0%
TGCCTGAAAAACTAATACGA+TGG + chr3_1:78324613-78324632 Msa0377690:three_prime_UTR 35.0%
TAAGAATCTCCTAGATCTGA+TGG - chr3_1:78324652-78324671 None:intergenic 35.0%
! GGTTAACATTGTGGACTATG+TGG - chr3_1:78323110-78323129 None:intergenic 40.0%
GTTAACCACCAAATTGTGAG+TGG + chr3_1:78323123-78323142 Msa0377690:five_prime_UTR 40.0%
ATCAAATTGTAGCCACAGGT+TGG - chr3_1:78323175-78323194 None:intergenic 40.0%
TTCAGCCAAACAAGAGAAGA+AGG + chr3_1:78323438-78323457 Msa0377690:CDS 40.0%
TATAAGCTGAGCATCTTGTG+CGG - chr3_1:78323533-78323552 None:intergenic 40.0%
AGATGCTCAGCTTATACAAG+AGG + chr3_1:78323537-78323556 Msa0377690:CDS 40.0%
AATCTGGAGAACAAATGAGC+AGG + chr3_1:78323575-78323594 Msa0377690:CDS 40.0%
ATCTGGAGAACAAATGAGCA+GGG + chr3_1:78323576-78323595 Msa0377690:CDS 40.0%
GGAGCTCTTAGAAGGAAAAT+TGG + chr3_1:78323700-78323719 Msa0377690:CDS 40.0%
GCTCTTAGAAGGAAAATTGG+TGG + chr3_1:78323703-78323722 Msa0377690:CDS 40.0%
GAAAATTGGTGGGACTTACA+AGG + chr3_1:78323714-78323733 Msa0377690:CDS 40.0%
TTGTTGTATTGAGCAGTGGA+TGG + chr3_1:78323875-78323894 Msa0377690:intron 40.0%
GGATGGAGAATATGTTGAAG+AGG + chr3_1:78323892-78323911 Msa0377690:CDS 40.0%
GAGAATATGTTGAAGAGGGT+TGG + chr3_1:78323897-78323916 Msa0377690:CDS 40.0%
TTGGGTAGACAAAACATGCA+AGG + chr3_1:78323916-78323935 Msa0377690:CDS 40.0%
GTATGCAAAAAGGACACCAA+GGG + chr3_1:78323938-78323957 Msa0377690:CDS 40.0%
TAAGAATGCAACCGGTCATT+TGG - chr3_1:78324159-78324178 None:intergenic 40.0%
!!! GGTGTTTTAGCATGTTTTGG+AGG + chr3_1:78324547-78324566 Msa0377690:three_prime_UTR 40.0%
GGGTAAAGAGCAGAATTCTT+AGG - chr3_1:78324918-78324937 None:intergenic 40.0%
GGGAGTGAGCAAAAACATTT+GGG - chr3_1:78324938-78324957 None:intergenic 40.0%
TGGGAGTGAGCAAAAACATT+TGG - chr3_1:78324939-78324958 None:intergenic 40.0%
! GGTTAACATTGTGGACTATG+TGG - chr3_1:78323110-78323129 None:intergenic 40.0%
GTTAACCACCAAATTGTGAG+TGG + chr3_1:78323123-78323142 Msa0377690:five_prime_UTR 40.0%
ATCAAATTGTAGCCACAGGT+TGG - chr3_1:78323175-78323194 None:intergenic 40.0%
TTCAGCCAAACAAGAGAAGA+AGG + chr3_1:78323438-78323457 Msa0377690:CDS 40.0%
TATAAGCTGAGCATCTTGTG+CGG - chr3_1:78323533-78323552 None:intergenic 40.0%
AGATGCTCAGCTTATACAAG+AGG + chr3_1:78323537-78323556 Msa0377690:CDS 40.0%
AATCTGGAGAACAAATGAGC+AGG + chr3_1:78323575-78323594 Msa0377690:CDS 40.0%
ATCTGGAGAACAAATGAGCA+GGG + chr3_1:78323576-78323595 Msa0377690:CDS 40.0%
GGAGCTCTTAGAAGGAAAAT+TGG + chr3_1:78323700-78323719 Msa0377690:CDS 40.0%
GCTCTTAGAAGGAAAATTGG+TGG + chr3_1:78323703-78323722 Msa0377690:CDS 40.0%
GAAAATTGGTGGGACTTACA+AGG + chr3_1:78323714-78323733 Msa0377690:CDS 40.0%
TTGTTGTATTGAGCAGTGGA+TGG + chr3_1:78323875-78323894 Msa0377690:intron 40.0%
GGATGGAGAATATGTTGAAG+AGG + chr3_1:78323892-78323911 Msa0377690:CDS 40.0%
GAGAATATGTTGAAGAGGGT+TGG + chr3_1:78323897-78323916 Msa0377690:CDS 40.0%
TTGGGTAGACAAAACATGCA+AGG + chr3_1:78323916-78323935 Msa0377690:CDS 40.0%
GTATGCAAAAAGGACACCAA+GGG + chr3_1:78323938-78323957 Msa0377690:CDS 40.0%
TAAGAATGCAACCGGTCATT+TGG - chr3_1:78324159-78324178 None:intergenic 40.0%
!!! GGTGTTTTAGCATGTTTTGG+AGG + chr3_1:78324547-78324566 Msa0377690:three_prime_UTR 40.0%
GGGTAAAGAGCAGAATTCTT+AGG - chr3_1:78324918-78324937 None:intergenic 40.0%
GGGAGTGAGCAAAAACATTT+GGG - chr3_1:78324938-78324957 None:intergenic 40.0%
TGGGAGTGAGCAAAAACATT+TGG - chr3_1:78324939-78324958 None:intergenic 40.0%
TGTTGCCACTCACAATTTGG+TGG - chr3_1:78323131-78323150 None:intergenic 45.0%
CACTGTTGCCACTCACAATT+TGG - chr3_1:78323134-78323153 None:intergenic 45.0%
GCTAGAGAAGCCACAAAATC+TGG + chr3_1:78323559-78323578 Msa0377690:CDS 45.0%
TGCAGTATGGAGCTCTTAGA+AGG + chr3_1:78323692-78323711 Msa0377690:intron 45.0%
GGTATGCAAAAAGGACACCA+AGG + chr3_1:78323937-78323956 Msa0377690:CDS 45.0%
TCATGTAGCATGTGCAGAGA+AGG + chr3_1:78323997-78324016 Msa0377690:CDS 45.0%
TGTGCAGAGAAGGCAAAATC+TGG + chr3_1:78324007-78324026 Msa0377690:CDS 45.0%
TTCCTCTTTGGCCAAATGAC+CGG + chr3_1:78324145-78324164 Msa0377690:three_prime_UTR 45.0%
GCAAATTCCCTTTGGCCATT+AGG + chr3_1:78324260-78324279 Msa0377690:three_prime_UTR 45.0%
TGTTGCCACTCACAATTTGG+TGG - chr3_1:78323131-78323150 None:intergenic 45.0%
CACTGTTGCCACTCACAATT+TGG - chr3_1:78323134-78323153 None:intergenic 45.0%
GCTAGAGAAGCCACAAAATC+TGG + chr3_1:78323559-78323578 Msa0377690:CDS 45.0%
TGCAGTATGGAGCTCTTAGA+AGG + chr3_1:78323692-78323711 Msa0377690:intron 45.0%
GGTATGCAAAAAGGACACCA+AGG + chr3_1:78323937-78323956 Msa0377690:CDS 45.0%
TCATGTAGCATGTGCAGAGA+AGG + chr3_1:78323997-78324016 Msa0377690:CDS 45.0%
TGTGCAGAGAAGGCAAAATC+TGG + chr3_1:78324007-78324026 Msa0377690:CDS 45.0%
TTCCTCTTTGGCCAAATGAC+CGG + chr3_1:78324145-78324164 Msa0377690:three_prime_UTR 45.0%
GCAAATTCCCTTTGGCCATT+AGG + chr3_1:78324260-78324279 Msa0377690:three_prime_UTR 45.0%
! GTGGACTATGTGGCACCTTA+GGG - chr3_1:78323100-78323119 None:intergenic 50.0%
! TGTGGACTATGTGGCACCTT+AGG - chr3_1:78323101-78323120 None:intergenic 50.0%
GGGCATCAAATTGTAGCCAC+AGG - chr3_1:78323179-78323198 None:intergenic 50.0%
TGAGCATCTTGTGCGGATCT+TGG - chr3_1:78323526-78323545 None:intergenic 50.0%
AGAACAAATGAGCAGGGAGC+AGG + chr3_1:78323582-78323601 Msa0377690:CDS 50.0%
CACTTGTCTTGCTTCACCCT+TGG - chr3_1:78323957-78323976 None:intergenic 50.0%
CAAGGGTGAAGCAAGACAAG+TGG + chr3_1:78323955-78323974 Msa0377690:CDS 50.0%
GCAAGACAAGTGGACAAGCT+TGG + chr3_1:78323965-78323984 Msa0377690:CDS 50.0%
AACCGGTCATTTGGCCAAAG+AGG - chr3_1:78324150-78324169 None:intergenic 50.0%
CCAAAGGGAATTTGCACCGA+TGG - chr3_1:78324255-78324274 None:intergenic 50.0%
CCATCGGTGCAAATTCCCTT+TGG + chr3_1:78324252-78324271 Msa0377690:three_prime_UTR 50.0%
GTGCGAGAAGAGACAAAGGA+GGG - chr3_1:78324482-78324501 None:intergenic 50.0%
! GTGGACTATGTGGCACCTTA+GGG - chr3_1:78323100-78323119 None:intergenic 50.0%
! TGTGGACTATGTGGCACCTT+AGG - chr3_1:78323101-78323120 None:intergenic 50.0%
GGGCATCAAATTGTAGCCAC+AGG - chr3_1:78323179-78323198 None:intergenic 50.0%
TGAGCATCTTGTGCGGATCT+TGG - chr3_1:78323526-78323545 None:intergenic 50.0%
AGAACAAATGAGCAGGGAGC+AGG + chr3_1:78323582-78323601 Msa0377690:CDS 50.0%
CACTTGTCTTGCTTCACCCT+TGG - chr3_1:78323957-78323976 None:intergenic 50.0%
CAAGGGTGAAGCAAGACAAG+TGG + chr3_1:78323955-78323974 Msa0377690:CDS 50.0%
GCAAGACAAGTGGACAAGCT+TGG + chr3_1:78323965-78323984 Msa0377690:CDS 50.0%
AACCGGTCATTTGGCCAAAG+AGG - chr3_1:78324150-78324169 None:intergenic 50.0%
CCAAAGGGAATTTGCACCGA+TGG - chr3_1:78324255-78324274 None:intergenic 50.0%
CCATCGGTGCAAATTCCCTT+TGG + chr3_1:78324252-78324271 Msa0377690:three_prime_UTR 50.0%
GTGCGAGAAGAGACAAAGGA+GGG - chr3_1:78324482-78324501 None:intergenic 50.0%
TGTGAGTGGCAACAGTGCTG+TGG + chr3_1:78323137-78323156 Msa0377690:five_prime_UTR 55.0%
CGTGCGAGAAGAGACAAAGG+AGG - chr3_1:78324483-78324502 None:intergenic 55.0%
GTGCGTGCGAGAAGAGACAA+AGG - chr3_1:78324486-78324505 None:intergenic 55.0%
TGTGAGTGGCAACAGTGCTG+TGG + chr3_1:78323137-78323156 Msa0377690:five_prime_UTR 55.0%
CGTGCGAGAAGAGACAAAGG+AGG - chr3_1:78324483-78324502 None:intergenic 55.0%
GTGCGTGCGAGAAGAGACAA+AGG - chr3_1:78324486-78324505 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78323097 78324968 78323097 ID=Msa0377690;Name=Msa0377690
chr3_1 mRNA 78323097 78324968 78323097 ID=Msa0377690-mRNA-1;Parent=Msa0377690;Name=Msa0377690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=225|1|1|1|1|1|3|908|171
chr3_1 exon 78323097 78323603 78323097 ID=Msa0377690-mRNA-1:exon:18833;Parent=Msa0377690-mRNA-1
chr3_1 exon 78323697 78323760 78323697 ID=Msa0377690-mRNA-1:exon:18834;Parent=Msa0377690-mRNA-1
chr3_1 exon 78323891 78324968 78323891 ID=Msa0377690-mRNA-1:exon:18835;Parent=Msa0377690-mRNA-1
chr3_1 five_prime_UTR 78323097 78323321 78323097 ID=Msa0377690-mRNA-1:five_prime_utr;Parent=Msa0377690-mRNA-1
chr3_1 CDS 78323322 78323603 78323322 ID=Msa0377690-mRNA-1:cds;Parent=Msa0377690-mRNA-1
chr3_1 CDS 78323697 78323760 78323697 ID=Msa0377690-mRNA-1:cds;Parent=Msa0377690-mRNA-1
chr3_1 CDS 78323891 78324060 78323891 ID=Msa0377690-mRNA-1:cds;Parent=Msa0377690-mRNA-1
chr3_1 three_prime_UTR 78324061 78324968 78324061 ID=Msa0377690-mRNA-1:three_prime_utr;Parent=Msa0377690-mRNA-1
Gene Sequence

>Msa0377690

ATGGGTCTTGGGACTTTGCCATTGATCCCTCCTTATTATACAAGTTTTTCTTCAAAGTCATCAGGACTTGTACATAAAAATACTAATAATTGCAATAGAAGCAAAAAATTCATAGTTTCAGCCAAACAAGAGAAGAAGGAAGAAGATAAGAATAAGCAATCTTTTTTTACTAGTGTAACTGATGCTCTTGATTTTGCTCAACCAAGATCCGCACAAGATGCTCAGCTTATACAAGAGGCTAGAGAAGCCACAAAATCTGGAGAACAAATGAGCAGGGAGCAGTATGGAGCTCTTAGAAGGAAAATTGGTGGGACTTACAAGGATTTTTTCAAATCTTATGTTGAAGTGGATGGAGAATATGTTGAAGAGGGTTGGGTAGACAAAACATGCAAGGTATGCAAAAAGGACACCAAGGGTGAAGCAAGACAAGTGGACAAGCTTGGAAGATATGTTCATGTAGCATGTGCAGAGAAGGCAAAATCTGGAAACTTCTTTACCAGACTCTTCTCTTTATGA

Protein sequence

>Msa0377690

MGLGTLPLIPPYYTSFSSKSSGLVHKNTNNCNRSKKFIVSAKQEKKEEDKNKQSFFTSVTDALDFAQPRSAQDAQLIQEAREATKSGEQMSREQYGALRRKIGGTYKDFFKSYVEVDGEYVEEGWVDKTCKVCKKDTKGEARQVDKLGRYVHVACAEKAKSGNFFTRLFSL*